RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2308
         (49 letters)



>gnl|CDD|190709 pfam03669, UPF0139, Uncharacterized protein family (UPF0139). 
          Length = 103

 Score = 91.4 bits (227), Expect = 1e-26
 Identities = 36/49 (73%), Positives = 41/49 (83%)

Query: 1  MNILGMIFSMCGLMMRLKWCAWAALYCACISFANSRVSDDGKQLLSSFM 49
          MN LGMIFSMCGLMMRLKWC+W A+ C+ ISFAN R S+D KQ+ SSFM
Sbjct: 35 MNFLGMIFSMCGLMMRLKWCSWLAIICSAISFANMRNSNDLKQISSSFM 83


>gnl|CDD|185014 PRK15054, PRK15054, nitrate reductase 2 subunit delta; Provisional.
          Length = 231

 Score = 26.4 bits (58), Expect = 0.51
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 7   IFSMCGLMMRLKWCAWAALYCACISFANSRVSDD 40
           I ++ G  ++ +   W AL+ A +  A S +S D
Sbjct: 132 ILALLGGRLKQREAPWYALFDALLQLAGSTLSSD 165


>gnl|CDD|187685 cd09627, DOMON_murB_like, Domon-like domain of
           UDP-N-acetylenolpyruvoylglucosamine reductase.
           UDP-N-acetylenolpyruvoylglucosamine reductase (murB)
           catalyzes an essential step in peptidoglycan
           biosynthesis, the reduction of
           UDP-N-acetylglucosamine-enolpyruvate to
           UDP-N-acetylmuramate. A subset of these FAD-dependent
           enzymes contains a C-terminal DOMON-like domain. DOMON
           domains can be found in all three kindgoms of life and
           are a diverse group of ligand binding domains that have
           been shown to interact with sugars and hemes; initially
           DOMON domains were suspected to confer protein-protein
           interactions. The DOMON-like domain in murB may bind a
           heme.
          Length = 179

 Score = 25.7 bits (57), Expect = 0.71
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 11  CGLMMRLKWCAWAALYCACISFANSRVSDDGKQLLSSF 48
             L +RL            +    + V +DG  LLS +
Sbjct: 122 LRLGLRLDLALLPPFVRGTLELGLTAVIEDGDGLLSYW 159


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.335    0.136    0.476 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,331,548
Number of extensions: 133001
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 6
Length of query: 49
Length of database: 10,937,602
Length adjustment: 22
Effective length of query: 27
Effective length of database: 9,961,814
Effective search space: 268968978
Effective search space used: 268968978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (24.2 bits)