Query psy2312
Match_columns 392
No_of_seqs 8 out of 10
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 21:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15446 zf-PHD-like: PHD/FYVE 34.3 12 0.00025 35.1 -0.4 17 288-304 113-129 (175)
2 cd01278 aprataxin_related apra 27.9 95 0.0021 24.1 3.8 14 323-336 15-28 (104)
3 PHA03247 large tegument protei 27.1 1.5E+03 0.034 29.6 16.4 146 142-290 2587-2735(3151)
4 COG3221 PhnD ABC-type phosphat 27.0 23 0.00049 34.3 0.2 41 321-369 220-260 (299)
5 PF04665 Pox_A32: Poxvirus A32 23.0 1.3E+02 0.0029 28.6 4.4 54 338-391 50-104 (241)
6 KOG3147|consensus 21.8 65 0.0014 31.6 2.2 35 319-355 67-101 (252)
7 cd00925 Cyt_c_Oxidase_VIa Cyto 21.3 40 0.00086 28.1 0.6 12 319-331 66-77 (86)
8 PF01616 Orbi_NS3: Orbivirus N 17.4 1.4E+02 0.0031 28.1 3.4 18 271-288 31-48 (195)
9 PTZ00261 acyltransferase; Prov 16.8 2E+02 0.0044 29.2 4.4 44 336-379 283-326 (355)
10 KOG0486|consensus 16.2 26 0.00056 35.7 -1.9 21 372-392 106-128 (351)
No 1
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=34.29 E-value=12 Score=35.06 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=14.2
Q ss_pred CCCCCCCcccceeeecc
Q psy2312 288 PMDNINNPENALIRLSS 304 (392)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ 304 (392)
.++-|||+||.|+|-..
T Consensus 113 d~~lvnN~~nVLFRC~~ 129 (175)
T PF15446_consen 113 DPELVNNPDNVLFRCTS 129 (175)
T ss_pred CHHHccChhheEEecCC
Confidence 45678999999999765
No 2
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=27.90 E-value=95 Score=24.11 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.3
Q ss_pred cceeeeeccceeec
Q psy2312 323 DHRLFWETERVCQF 336 (392)
Q Consensus 323 ~~~~~~~~~~~~~~ 336 (392)
.-|++||+|.+|-|
T Consensus 15 ~~~iv~~~~~~~a~ 28 (104)
T cd01278 15 PEDQVYEDDRVVVF 28 (104)
T ss_pred CccEEEeCCCEEEE
Confidence 46889999998765
No 3
>PHA03247 large tegument protein UL36; Provisional
Probab=27.11 E-value=1.5e+03 Score=29.62 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q psy2312 142 KGVSMTPNVPKSVSLTPNVPKGVSMTLNVPKGVSITPNVPKGISMTPNVPRGISMTPNVSKGVSMTPNVSKGVSMTPNVP 221 (392)
Q Consensus 142 KGpS~tPgsP~grsLSP~~PKg~S~tp~sPkG~slSP~sPKGpS~sP~sPrG~slSP~sPkGpS~tPgsp~G~slSP~sP 221 (392)
.++.-.|.+.+.+.+.+.+|.-+... +.++..++-.|-.++.+-..|....+.+..++..-..+....+...++...
T Consensus 2587 ~rp~~pP~~~rPr~p~~~~p~p~~pa---pp~P~PP~p~pP~PpPp~~~Ppa~~l~~~~~~a~p~~~~p~~~pa~~~~~~ 2663 (3151)
T PHA03247 2587 RRPDAPPQSARPRAPVDDRGDPRGPA---PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCccccCCCCCccccCCCCC
Q psy2312 222 KSVSLTPNVPKGVSITPNVPKGVTMTPNVPKGVSI---TPNVPKGISITPNVSKAVSITPKTNLEESNEPMD 290 (392)
Q Consensus 222 KgpS~sP~sPkg~slSP~~PKgps~tP~sPkg~sl---SP~~PKgpS~tP~~~~a~s~~p~~~~~~s~~~~~ 290 (392)
.-+-.++..|.+++..+..|+-+...+-++.-..+ +|-.|.-.......+-|.-.+||....+.-.|+.
T Consensus 2664 ~~r~~p~~~Pa~~s~p~~~p~~~a~~~pV~s~t~la~PPpp~P~P~P~p~~~~pa~P~ppgP~s~r~asP~~ 2735 (3151)
T PHA03247 2664 PRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 4
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.02 E-value=23 Score=34.30 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=34.2
Q ss_pred cccceeeeeccceeecccccCcccchhhhHHHHhhhhhhhHHHHHHHHH
Q psy2312 321 VGDHRLFWETERVCQFPIDHGTSKKNLWNKKLMNTMKTKVKIIMMKMKR 369 (392)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (392)
.-|-|.+|+|+.+|..|| +|.++|=..+|.|++-.+++|..
T Consensus 220 ~~~l~vi~~S~~iP~~pi--------~vr~~L~~~~k~kl~~af~~l~~ 260 (299)
T COG3221 220 AEKLRVIWKSPLIPNDPI--------AVRSDLPADLKEKLRDAFLDLAK 260 (299)
T ss_pred hhhceEEEecCCCCCCCE--------EEeCCCCHHHHHHHHHHHHhcCc
Confidence 357799999999999998 57777778888899888888854
No 5
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=22.98 E-value=1.3e+02 Score=28.63 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=37.1
Q ss_pred cccCcccchhhhHHHHh-hhhhhhHHHHHHHHHHHHHHHHhcccccccccceeec
Q psy2312 338 IDHGTSKKNLWNKKLMN-TMKTKVKIIMMKMKREIMKKKRRRGKKHYHSHQLLIL 391 (392)
Q Consensus 338 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (392)
..++.-.+.+|...+-. .....+..++.++++.|.+..++.-.+++-.|-|+||
T Consensus 50 ~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~~k~~~~~LiIl 104 (241)
T PF04665_consen 50 EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQKKNNPRFLIIL 104 (241)
T ss_pred CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcccCCCCCeEEEE
Confidence 55555667788654432 3456677888888888877766444556888888887
No 6
>KOG3147|consensus
Probab=21.75 E-value=65 Score=31.61 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=26.2
Q ss_pred CCcccceeeeeccceeecccccCcccchhhhHHHHhh
Q psy2312 319 GDVGDHRLFWETERVCQFPIDHGTSKKNLWNKKLMNT 355 (392)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (392)
-+.+.-++||--||+|+| ||-.|--.+..+.+.+.
T Consensus 67 i~w~kW~if~~DER~Vp~--~~~dSNyg~~~~~~l~~ 101 (252)
T KOG3147|consen 67 IDWSKWHIFFVDERVVPL--DDPDSNYGLAKRHFLSK 101 (252)
T ss_pred CCccceEEEEEeccccCC--CCCcccHHHHHHhhhhh
Confidence 356778999999999965 77777766666665543
No 7
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=21.30 E-value=40 Score=28.12 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=9.3
Q ss_pred CCcccceeeeecc
Q psy2312 319 GDVGDHRLFWETE 331 (392)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (392)
|| |||-|||..+
T Consensus 66 GD-G~~tlFhN~~ 77 (86)
T cd00925 66 GD-GNKTLFHNPH 77 (86)
T ss_pred CC-CCcccccCCC
Confidence 45 8999999754
No 8
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=17.39 E-value=1.4e+02 Score=28.14 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.8
Q ss_pred CCccccCCCCCccccCCC
Q psy2312 271 SKAVSITPKTNLEESNEP 288 (392)
Q Consensus 271 ~~a~s~~p~~~~~~s~~~ 288 (392)
.||.+-+-|++.+..+|-
T Consensus 31 ~~AmsstTGA~~~~K~EK 48 (195)
T PF01616_consen 31 DNAMSSTTGATEAQKNEK 48 (195)
T ss_pred HHhccCCccCchhhhHHH
Confidence 478888999999888873
No 9
>PTZ00261 acyltransferase; Provisional
Probab=16.84 E-value=2e+02 Score=29.25 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred cccccCcccchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHhcc
Q psy2312 336 FPIDHGTSKKNLWNKKLMNTMKTKVKIIMMKMKREIMKKKRRRG 379 (392)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (392)
|||+...-.++-+..++-+.|+.....|+..++++--..+||||
T Consensus 283 ~PI~~~~~~~~eL~~~lr~lmqe~~~~I~~el~~~~~~~~~~~~ 326 (355)
T PTZ00261 283 YPIDYDRDSSKDVAVGLQQRMQKVRDEIAAEVAAAEEARRRRRG 326 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcc
No 10
>KOG0486|consensus
Probab=16.15 E-value=26 Score=35.73 Aligned_cols=21 Identities=48% Similarity=0.678 Sum_probs=0.0
Q ss_pred HHH--HHhcccccccccceeecC
Q psy2312 372 MKK--KRRRGKKHYHSHQLLILK 392 (392)
Q Consensus 372 ~~~--~~~~~~~~~~~~~~~~~~ 392 (392)
||| |.||-+-||-||||--|+
T Consensus 106 ~kki~KqrrQrthFtSqqlqele 128 (351)
T KOG0486|consen 106 KKKISKQRRQRTHFTSQQLQELE 128 (351)
T ss_pred cchhhhhhhhhhhhHHHHHHHHH
Done!