Query psy2312
Match_columns 392
No_of_seqs 8 out of 10
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 21:27:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4evu_A Putative periplasmic pr 29.1 30 0.001 26.9 2.3 24 363-386 31-54 (72)
2 2b3f_A Glucose-binding protein 22.7 44 0.0015 29.2 2.4 29 359-387 372-400 (400)
3 3blj_A Poly(ADP-ribose) polyme 21.2 1E+02 0.0035 26.8 4.5 42 316-357 8-61 (221)
4 2gm5_A Transposon gamma-delta 20.9 54 0.0018 26.1 2.4 24 358-381 107-130 (139)
5 4dm9_A Ubiquitin carboxyl-term 18.1 51 0.0018 29.7 1.9 26 327-352 177-202 (228)
6 1jid_A Signal recognition part 17.5 27 0.00093 29.5 0.0 26 361-386 102-127 (128)
7 1wcv_1 SOJ, segregation protei 16.4 72 0.0025 26.6 2.3 30 357-386 228-257 (257)
8 3rii_A Ubiquitin carboxyl-term 14.9 58 0.002 29.4 1.5 35 327-361 180-214 (233)
9 3v26_X ORF3, ORF95, probable s 13.9 99 0.0034 24.0 2.4 33 354-386 68-100 (101)
10 1xd3_A Ubiquitin carboxyl-term 13.2 76 0.0026 28.5 1.7 35 327-361 180-214 (230)
No 1
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=29.10 E-value=30 Score=26.89 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhccccccccc
Q psy2312 363 IMMKMKREIMKKKRRRGKKHYHSH 386 (392)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~ 386 (392)
-+|.++.+|-||-..+|-+|||.=
T Consensus 31 sp~D~~~~lskkAdekGA~~y~Ii 54 (72)
T 4evu_A 31 NMTEISYQVAKRAAKKGAKYYHIT 54 (72)
T ss_dssp SHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999999999999999999853
No 2
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=22.75 E-value=44 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccccc
Q psy2312 359 KVKIIMMKMKREIMKKKRRRGKKHYHSHQ 387 (392)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (392)
.++-.+.++.+++-+..++.|+.|.|.|.
T Consensus 372 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 400 (400)
T 2b3f_A 372 NPQAAANAAQAIADQVGLGRLGQHHHHHH 400 (400)
T ss_dssp CHHHHHHHHHHHHHHHTTTCC--------
T ss_pred CHHHHHHHHHHHHHHhhhcccccccccCC
Confidence 46667788888888888899999988773
No 3
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=21.15 E-value=1e+02 Score=26.77 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=23.6
Q ss_pred ccCCCcccceee---------eec---cceeecccccCcccchhhhHHHHhhhh
Q psy2312 316 SLGGDVGDHRLF---------WET---ERVCQFPIDHGTSKKNLWNKKLMNTMK 357 (392)
Q Consensus 316 ~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (392)
+.|-|+||+.|. |+. ...+..+++.++..-+...+.+.++|.
T Consensus 8 ~~~~~~~~~~l~~~~~~~P~~W~~~~~~~~~l~~L~~~s~ey~~V~~~f~~t~~ 61 (221)
T 3blj_A 8 SSGVDLGTENLYFQSMNLPEHWTDMNHQLFCMVQLEPGQSEYNTIKDKFTRTCS 61 (221)
T ss_dssp -----------------CCTTSCCCTTCSEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred ccccccCChhhhcccCCCCCCccccCCCCEEEEECCCCCHHHHHHHHHHHhhCC
Confidence 346677777653 654 346778899999888888888888885
No 4
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=20.90 E-value=54 Score=26.06 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccc
Q psy2312 358 TKVKIIMMKMKREIMKKKRRRGKK 381 (392)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~ 381 (392)
..+.-.+-.+.|+.++++-|.|.+
T Consensus 107 ~~i~~~~Ae~E~~~i~~R~~~g~~ 130 (139)
T 2gm5_A 107 VTILSAVAQAERQRILERTNEGRQ 130 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888888888863
No 5
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=18.12 E-value=51 Score=29.66 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=20.2
Q ss_pred eeeccceeecccccCcccchhhhHHH
Q psy2312 327 FWETERVCQFPIDHGTSKKNLWNKKL 352 (392)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (392)
.||-+-.-.+|||||......|-++.
T Consensus 177 LyELDG~k~gPi~~G~~~~~~~l~~a 202 (228)
T 4dm9_A 177 LYELDGRMPFPVNHGASSEDTLLKDA 202 (228)
T ss_dssp EEEECTTSSSCEEEEECCGGGHHHHH
T ss_pred EEEcCCCCCCCceeccCCchhHHHHH
Confidence 58888888999999998766565444
No 6
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=17.50 E-value=27 Score=29.54 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccc
Q psy2312 361 KIIMMKMKREIMKKKRRRGKKHYHSH 386 (392)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (392)
+.||.++-.+|-+.|.|..|.|.|-|
T Consensus 102 ~~Ll~~IA~~I~~lr~r~~~~~~~~~ 127 (128)
T 1jid_A 102 KSVMLYAAEMIPKLKTRTQLEHHHHH 127 (128)
T ss_dssp HHHHHHHHHHGGGCTTC---------
T ss_pred HHHHHHHHHHHHHhhccCCccccccC
No 7
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=16.38 E-value=72 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccccccccc
Q psy2312 357 KTKVKIIMMKMKREIMKKKRRRGKKHYHSH 386 (392)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (392)
+.+...-+.++-+||+++-...|..|.|.|
T Consensus 228 ~~~~~~~~~~la~~l~~~~~~~~~~~~~~~ 257 (257)
T 1wcv_1 228 TSPGAHAYRRLAEEVMARVQEAGSHHHHHH 257 (257)
T ss_dssp TSHHHHHHHHHHHHHHHHHC----------
T ss_pred CChHHHHHHHHHHHHHHhhcccCcccccCC
No 8
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=14.89 E-value=58 Score=29.39 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=0.0
Q ss_pred eeeccceeecccccCcccchhhhHHHHhhhhhhhH
Q psy2312 327 FWETERVCQFPIDHGTSKKNLWNKKLMNTMKTKVK 361 (392)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (392)
.||-+-.-.+||+||.....-|-++....++.++.
T Consensus 180 LyELDG~k~gPi~~G~~~~e~~l~~a~~vi~~ri~ 214 (233)
T 3rii_A 180 LYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQ 214 (233)
T ss_dssp EEEECTTSSSCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCcccCCCCchhHHHHHHHHHHHHHH
No 9
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=13.91 E-value=99 Score=24.00 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccccccccc
Q psy2312 354 NTMKTKVKIIMMKMKREIMKKKRRRGKKHYHSH 386 (392)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (392)
..|-.-+...+-||.|.|.|.|.+-...|.|-|
T Consensus 68 ~d~yaAID~a~dkLerQLrK~K~k~~~~~~~~~ 100 (101)
T 3v26_X 68 QDMYAAIDGLIDKLARQLTKHKDKLKQHHHHHH 100 (101)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
No 10
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=13.19 E-value=76 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=0.0
Q ss_pred eeeccceeecccccCcccchhhhHHHHhhhhhhhH
Q psy2312 327 FWETERVCQFPIDHGTSKKNLWNKKLMNTMKTKVK 361 (392)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (392)
.||-.-.-.+||+||.....-|-++....++..+.
T Consensus 180 LyELDG~k~gPi~~G~~~~~~~l~~a~~vi~~~~~ 214 (230)
T 1xd3_A 180 LYELDGRKPFPINHGETSDETLLEDAIEVCKKFME 214 (230)
T ss_dssp EEEECTTSSSCEEEEECCTTTHHHHHHHHHHHHHH
T ss_pred EEEccCCCCCCeecCCCCcHhHHHHHHHHHHHHHH
Done!