Query psy2312
Match_columns 392
No_of_seqs 8 out of 10
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 21:27:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cmxa_ d.3.1.6 (A:) Ubiquitin 24.8 14 0.001 31.0 1.8 20 327-346 172-192 (229)
2 d1onqa2 d.19.1.1 (A:7-183) CD1 22.9 62 0.0045 24.8 5.3 81 304-390 10-94 (177)
3 d1iakb2 d.19.1.1 (B:5-92) Clas 20.1 18 0.0013 27.2 1.4 50 307-362 13-71 (87)
4 d2etla1 d.3.1.6 (A:1-223) Ubiq 19.3 20 0.0014 30.0 1.6 26 327-352 172-197 (223)
5 d1xd3a_ d.3.1.6 (A:) Ubiquitin 19.1 21 0.0015 29.9 1.7 27 327-353 179-205 (229)
6 d2i9ia1 c.51.6.1 (A:51-271) Hy 16.5 1.1E+02 0.0078 26.3 5.8 33 296-328 115-153 (221)
7 d2icya2 c.68.1.5 (A:6-383) UDP 14.9 24 0.0018 31.3 1.2 39 331-388 178-216 (378)
8 d1aa7a_ a.95.1.1 (A:) Influenz 14.3 16 0.0012 30.2 -0.2 46 326-372 43-108 (158)
9 d1y23a_ d.13.1.1 (A:) Hit {Bac 13.4 51 0.0037 23.8 2.5 12 325-336 16-27 (139)
10 d1mnga1 a.2.11.1 (A:1-92) Mn s 12.2 3 0.00022 31.0 -4.9 23 308-330 67-89 (92)
No 1
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=24.82 E-value=14 Score=30.95 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=15.4
Q ss_pred eeecccee-ecccccCcccch
Q psy2312 327 FWETERVC-QFPIDHGTSKKN 346 (392)
Q Consensus 327 ~~~~~~~~-~~~~~~~~~~~~ 346 (392)
.||-.-.= ++||+||.+..+
T Consensus 172 lyELDG~k~~gPi~hG~~~~~ 192 (229)
T d1cmxa_ 172 IFELDGRNLSGPLYLGKSDPT 192 (229)
T ss_dssp EEEECTTCTTCCEEEEECCTT
T ss_pred EEEcCCCCCCCCeECCCCCCc
Confidence 58888654 799999976644
No 2
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1a [TaxId: 9606]}
Probab=22.86 E-value=62 Score=24.84 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=38.8
Q ss_pred cceecCccchhcccCCCcccceee-eeccc---eeecccccCcccchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHhcc
Q psy2312 304 SSIYTDSSEDISSLGGDVGDHRLF-WETER---VCQFPIDHGTSKKNLWNKKLMNTMKTKVKIIMMKMKREIMKKKRRRG 379 (392)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (392)
|+.+..|.-+.... |-|+|..+. |.++. +.+-|--...-....|.+. ....++..+.+++.|+.-.+..+
T Consensus 10 s~~~n~s~~~~~~~-g~lDd~q~~~yDS~t~~~~~~~pW~~~~~~~e~we~~-----~~~~~~~~~~~~~~v~~~~~~~~ 83 (177)
T d1onqa2 10 ASFYNHSWKQNLVS-GWLSDLQTHTWDSNSSTIVFLWPWSRGNFSNEEWKEL-----ETLFRIRTIRSFEGIRRYAHELQ 83 (177)
T ss_dssp EEEEETTEEEEEEE-EEETTEEEEEEETTTTEEEESSTTTTTTCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeccCCCeeeEEEE-EEECCEEEEEEECCCCceeECCchhhccCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445555444333 335554443 45433 2333322222223556543 33444555555665555555556
Q ss_pred cccccccceee
Q psy2312 380 KKHYHSHQLLI 390 (392)
Q Consensus 380 ~~~~~~~~~~~ 390 (392)
..+.|..|.++
T Consensus 84 ~~g~h~lQ~~~ 94 (177)
T d1onqa2 84 FEYPFEIQVTG 94 (177)
T ss_dssp CCSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 66677667653
No 3
>d1iakb2 d.19.1.1 (B:5-92) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=20.07 E-value=18 Score=27.21 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=31.8
Q ss_pred ecCccchhcccCCCcccceeeeeccceeecccccC---------cccchhhhHHHHhhhhhhhHH
Q psy2312 307 YTDSSEDISSLGGDVGDHRLFWETERVCQFPIDHG---------TSKKNLWNKKLMNTMKTKVKI 362 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 362 (392)
|++..|++.-| +|.+|.-+...+|--|-| --....||+.+|..++..|.-
T Consensus 13 f~NgTerVr~l------~ryiyNr~e~~rFdSdvG~fva~TelG~~~Ae~wNs~~Le~~Ra~Vdt 71 (87)
T d1iakb2 13 FTNGTQRIRLV------IRYIYNREEYVRFDSDVGEYRAVTELGRPDAEYWNKQYLERTRAELDT 71 (87)
T ss_dssp EETGGGEEEEE------EEEEETTEEEEEEETTTCSEEESSGGGHHHHHHHHHHTHHHHHTHHHH
T ss_pred EecCCeEEEEE------eeeEecCceEEEEcCCCCEEEeECCCcccCHHHHCHHHHHHHHhhccc
Confidence 34445554443 566777777777766644 344678999888777776653
No 4
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.31 E-value=20 Score=30.04 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=21.1
Q ss_pred eeeccceeecccccCcccchhhhHHH
Q psy2312 327 FWETERVCQFPIDHGTSKKNLWNKKL 352 (392)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (392)
.||-.-.-.+||+||....+.|-++.
T Consensus 172 lyELDG~k~~Pi~hG~~~~d~~l~~a 197 (223)
T d2etla1 172 LYELDGRMPFPVNHGASSEDTLLKDA 197 (223)
T ss_dssp EEEECTTSSSCEEEEECCTTSHHHHH
T ss_pred EEEecCCcCCCcccCCCCchhHHHHH
Confidence 58888888899999988877776554
No 5
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.07 E-value=21 Score=29.94 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=21.5
Q ss_pred eeeccceeecccccCcccchhhhHHHH
Q psy2312 327 FWETERVCQFPIDHGTSKKNLWNKKLM 353 (392)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (392)
.||-.-.-++||+||.....-|.++..
T Consensus 179 lyELDG~k~~Pi~hG~~~~~~~l~~a~ 205 (229)
T d1xd3a_ 179 LYELDGRKPFPINHGETSDETLLEDAI 205 (229)
T ss_dssp EEEECTTSSSCEEEEECCTTTHHHHHH
T ss_pred EEEccCCCCCCcccCCCCchhHHHHHH
Confidence 588888889999999988777766543
No 6
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492 {Helicobacter pylori [TaxId: 210]}
Probab=16.46 E-value=1.1e+02 Score=26.35 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=24.3
Q ss_pred ccceeeecc-----ceecCccch-hcccCCCcccceeee
Q psy2312 296 ENALIRLSS-----SIYTDSSED-ISSLGGDVGDHRLFW 328 (392)
Q Consensus 296 ~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 328 (392)
++++|..|| +||.-.|+| |-++|-|||+-.-|-
T Consensus 115 ~~t~iD~SsG~v~~~f~EP~S~~vihsF~vdls~~~a~~ 153 (221)
T d2i9ia1 115 LDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTFQAMT 153 (221)
T ss_dssp EEEEEEEEEEEEEEEEECTTTCCEEEEEEEECCCCEEEE
T ss_pred ccccccccCceEEEEEecCCccchHHHhcccHHHHHHHH
Confidence 377888776 467777766 578999999876554
No 7
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.92 E-value=24 Score=31.29 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=28.3
Q ss_pred cceeecccccCcccchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHhcccccccccce
Q psy2312 331 ERVCQFPIDHGTSKKNLWNKKLMNTMKTKVKIIMMKMKREIMKKKRRRGKKHYHSHQL 388 (392)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
+..|.+|-.||-.-..|++..+++.| +++|++|.|.|+.
T Consensus 178 ~~~~~~P~GhGdi~~aL~~sG~Ld~l-------------------~~~Gieyi~v~~v 216 (378)
T d2icya2 178 DKEGWYPPGHGDVFPALMNSGKLDTF-------------------LSQGKEYVFVANS 216 (378)
T ss_dssp SGGGEECCCGGGHHHHHHHHSHHHHH-------------------HTTTCCEEEEEET
T ss_pred CcceeecCCChhhhHHHHhcChHHHH-------------------HhcCCEEEEEEcc
Confidence 45688899999877777666555443 4578999888874
No 8
>d1aa7a_ a.95.1.1 (A:) Influenza virus matrix protein M1 {Influenza A virus [TaxId: 11320]}
Probab=14.26 E-value=16 Score=30.25 Aligned_cols=46 Identities=30% Similarity=0.518 Sum_probs=28.9
Q ss_pred eeeeccceeeccc---------------ccCcccchhhhHHH-----HhhhhhhhHHHHHHHHHHHH
Q psy2312 326 LFWETERVCQFPI---------------DHGTSKKNLWNKKL-----MNTMKTKVKIIMMKMKREIM 372 (392)
Q Consensus 326 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 372 (392)
+-|--.|-|--|| |.|.-+..+-...| -|+|+.-||.. .||||||-
T Consensus 43 mEWlKtr~~Ls~ltK~ilG~~~~~~~Pser~lq~RRFv~naLngngdp~~m~k~v~l~-rKlkReit 108 (158)
T d1aa7a_ 43 MEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDKAVKLY-RKLKREIT 108 (158)
T ss_dssp HHHHHTCSSSCHHHHHHHHHHHHHHSSCCTTCCCCHHHHHHTSGGGCHHHHHHHHHHH-HHHTTCCS
T ss_pred HHHHhcCcccchHHhhhhheEEEEeccchhhhHHhHhhhccccCCCCchhHHHHHHHH-HHHHhHcc
Confidence 4577777776554 44544444333333 36888888776 99999874
No 9
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Probab=13.44 E-value=51 Score=23.85 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=8.7
Q ss_pred eeeeeccceeec
Q psy2312 325 RLFWETERVCQF 336 (392)
Q Consensus 325 ~~~~~~~~~~~~ 336 (392)
+++||+|.++-|
T Consensus 16 ~~i~ede~~~af 27 (139)
T d1y23a_ 16 AKVYEDEHVLAF 27 (139)
T ss_dssp CEEEECSSEEEE
T ss_pred cEEEECCCEEEE
Confidence 567888887754
No 10
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=12.24 E-value=3 Score=31.03 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=17.3
Q ss_pred cCccchhcccCCCcccceeeeec
Q psy2312 308 TDSSEDISSLGGDVGDHRLFWET 330 (392)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~ 330 (392)
.+....|..-||-+-.|.|||+.
T Consensus 67 ~~~~~~~~nn~gg~~NH~~fW~~ 89 (92)
T d1mnga1 67 QDIQTAVRNNGGGHLNHSLFWRL 89 (92)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhchhHHHHHHHHcc
Confidence 34445577788888999999974
Done!