RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2312
(392 letters)
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 33.4 bits (76), Expect = 0.23
Identities = 45/232 (19%), Positives = 70/232 (30%), Gaps = 23/232 (9%)
Query: 8 EKTQPLTQESDAMQSIPSPSHTPSVPNKIQNVSITPNPVTPKKMSGVSI--TPNKPQAVS 65
E T PLT + + IPS P + P + I P +P+AV
Sbjct: 308 ETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVV 367
Query: 66 TN--SP------LPKGISITPNVPKGISVTPNVPKGVSM--TLNVPKGVSITPNVPKGIS 115
SP L S P P + V+ +V NVP+
Sbjct: 368 PRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEP 427
Query: 116 MTPNVPRGISMTP-----NVSKGVSMTPNVSKGVSMTPNVPKSVSLTPNVPKGVSMTLNV 170
+ ++P ++ S +P GVS + + SV P+ + T
Sbjct: 428 AQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAA 487
Query: 171 ----PKGVSITPNVPKGISMTPNVPRGISMTPNVSKGVSMTPNVSKGVSMTP 218
++P P P + V+ S T V K + P
Sbjct: 488 APPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAP--SSTNEVVKVGNSAP 537
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 33.4 bits (76), Expect = 0.23
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 5 DHQEKTQPLTQESDAMQSIPSPSHTPSVPNKIQNVSIT-PNPVTPKKMS-GVSIT--PNK 60
DH+ QPL +E +A+ S S +T P+K+ + + + V+ +S GVS+ N
Sbjct: 604 DHESSEQPL-EEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVSESGVSTGVSVADESND 662
Query: 61 PQAVSTNSPLPKGISITPN--VPKGISVTPNV 90
+ N P +SI P P S T +V
Sbjct: 663 SENELVNCASPSSLSIVPVEVSPVLKSPTLSV 694
Score = 31.8 bits (72), Expect = 0.72
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 208 PNVSKGVSMTPNVPKSVSLTPNVPKGVSIT--PNVPKGVTMTPNVPKGVSITPN--VPKG 263
+ SK V + P+ SVS + V GVS+ N + + P +SI P P
Sbjct: 629 ESPSKMVEIRPSCQDSVSES-GVSTGVSVADESNDSENELVNCASPSSLSIVPVEVSPVL 687
Query: 264 ISITPNVSKAVSITPKT-------NLEESNEPMDNINNPENALIRLSSSIYTDSSEDISS 316
S T +VS + + K+ + + ++ PE+A + S+ +SS +S+
Sbjct: 688 KSPTLSVSPRIRNSRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALST 747
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 31.3 bits (71), Expect = 0.93
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 55 SITPNKPQAVSTNSPLPKGISITPNVPKGISVTPNVPKGVSMTLNVPKGVSITP--NVPK 112
+P A + SP P S S T +++++ P V + P P+
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ 445
Query: 113 GISMTPNVPRGISMTPNVSKGVSMTPNVSKGV 144
+ VSK S+ P+ + +
Sbjct: 446 AVRPAQFKEE---KKIPVSKVSSLGPSTLRPI 474
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.7 bits (70), Expect = 1.7
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 209 NVSKGVSMTPNVPKSVSLTPNVPKGVSITPNVPKGVTMTPNVPKGVSITPNVPKGISITP 268
N+ N K+ P + TP +P+ T P P + S P
Sbjct: 509 NLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTA-TAPPPTPPPPPPTATQASSNAP 567
Query: 269 NVSKA-VSITPKTNLEESNEPMDNINN 294
A S P E + P + +
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDSSP 594
>gnl|CDD|222784 PHA00363, PHA00363, major capsid protein.
Length = 557
Score = 30.2 bits (68), Expect = 2.2
Identities = 15/78 (19%), Positives = 26/78 (33%)
Query: 64 VSTNSPLPKGISITPNVPKGISVTPNVPKGVSMTLNVPKGVSITPNVPKGISMTPNVPRG 123
VS+N+P+P + P + P G + V + I + N
Sbjct: 226 VSSNNPIPAFVWDNSVNPTWFNSGGPTPTGTLGIVPVGQAYYIKKPGNDPTAQAANGEPA 285
Query: 124 ISMTPNVSKGVSMTPNVS 141
TP + + T V+
Sbjct: 286 TDSTPRLYADLGSTSPVT 303
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 30.1 bits (67), Expect = 2.3
Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 10/265 (3%)
Query: 29 TPSVPNKIQNVSITPNPVTPKKMSGVSITP----NKPQAVST----NSPLPKGISITPNV 80
TPS+P +++ T +G + + P + +T N+ P TPN
Sbjct: 452 TPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNA 511
Query: 81 PKGISVTPNVPKGVSMTLNVPKGVSITPNVPKGISMTPNVPRGISMTPNVSKGVSMTPNV 140
+ + + + GV+ T P + + +T + TP V
Sbjct: 512 TSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVV 571
Query: 141 SKGVSMTPNVPKSVSLTPNVPKGVSMTLNVPKGVSITPNVPKGISMTPNVPRGISMTPNV 200
+ S+ + + +P TP + + N+
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPG-IPSSSHSTPRSNSTSTTPLLTSAHPTGGENI 630
Query: 201 SKGVSMTPNVSKGVSMTPNVPKSVSLTPNVPKGVSITPNVPKGVTMTPNVPKGVSITPNV 260
++ P+ + +++P + + P G S T P V +T +P + +P+
Sbjct: 631 TEETPSVPSTTHVSTLSPGPGPGTTSQVSGP-GNSSTSRYPGEVHVTEGMPNPNATSPSA 689
Query: 261 PKGISITPNVSKAVSITPKTNLEES 285
P G + + +E+
Sbjct: 690 PSGQKTAVPTVTSTGGKANSTTKET 714
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal
structure and biogenesis].
Length = 125
Score = 28.0 bits (63), Expect = 4.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 367 MKREIMKKKRRRGKKHYH 384
+ ++ ++RRRGK+ Y
Sbjct: 1 PRYKVKFRRRRRGKRAYR 18
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.5 bits (66), Expect = 4.5
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 12 PLTQESDAMQSIPSPSHTPSVPNKIQNVSITPNPVTPKKMSGVSITPNKPQAVSTNSPLP 71
+ S++ +S+PSP P + P P S P A T P P
Sbjct: 2787 AVASLSESRESLPSPWDPADPPA----AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842
Query: 72 KGISITPNVPKGISVTPNVPKGVSMTLNVPKGVSITPNVPKGISMT-PNVPR 122
G P++P G SV P P P P + P V R
Sbjct: 2843 PG-PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR 2893
Score = 28.4 bits (63), Expect = 9.3
Identities = 24/129 (18%), Positives = 30/129 (23%), Gaps = 11/129 (8%)
Query: 7 QEKTQPLTQESDAMQSIPSPSHTPSVPNKIQNVSITPNPVTPKKMSGVSITPNKPQAVST 66
T+ D + P P P P P P P P P
Sbjct: 2892 SRSTESFALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
Query: 67 NSPLPKGISITPNVPKGISVTPNVPKGVSMTLNVPKGVSITPNVPKGISMTPNVPRGISM 126
+ P G P G V V VP+ P + + P
Sbjct: 2951 GAGEPSG--AVPQPWLGALVPGRVA--------VPRFRVPQPAPSREAPASSTPPLTGHS 3000
Query: 127 TPNVSKGVS 135
VS S
Sbjct: 3001 LSRVSSWAS 3009
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 29.2 bits (65), Expect = 5.0
Identities = 50/213 (23%), Positives = 66/213 (30%), Gaps = 30/213 (14%)
Query: 63 AVSTNSPLPKGISITPNVPKGISVTPNVPKGVSMTLNV----PKGVSITPNVPKGISM-- 116
AVS+ P+ N + + + P S + P+ I+M
Sbjct: 53 AVSSQQPIKLASRDLSN--DEMMMVSSDPPKSSSEMEGEMLAPQATVGRDEATPSIAMEN 110
Query: 117 TPNVPRGI-SMTPNVSK-GVSMTP--------NVSKGVSMTPNVPKSVSLTPNVPKGVSM 166
TP+ PR +TP K S T + S N S S V
Sbjct: 111 TPSPPRRTAKITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSGRQRVKSYTPK 170
Query: 167 TLNVPKGVSITPNVPKGISMTPNVPRGISMTPNVSKGVSMTPNVSKGVSMTPNVPKSVS- 225
K S T K TP+ P G M + + MT S G++ V S
Sbjct: 171 PRGEVKSSSPTQTREKVRKYTPS-PLG-RMVNSYAPSTFMTMPRSHGITPRTTVKDSEIT 228
Query: 226 -----LTPNVPKGV--SITPNVPKGVTMTPNVP 251
L N K TP KG MT N P
Sbjct: 229 ATYKMLETNPSKRTAGKTTPTPLKG--MTDNTP 259
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 29.2 bits (65), Expect = 5.2
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 21 QSIPSPSHTPSVPNKIQNVSITPNPVTPKKMSGVSITPNKPQAVSTNSP----------- 69
+ +P P+ P P P G+ + P+ PQ
Sbjct: 287 EPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDV-PDNPQDPVPPPNEGKDGNPNEEN 345
Query: 70 -LPKGISITPNVPKGISVTPNVPKGVSMTLNVPKGVSITPNVPKGISMTPNVPRGISMTP 128
P G P+ PNVP G + + P P PN+P
Sbjct: 346 LFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIP--EDSNK 403
Query: 129 NVSKGVSMTPNVSK 142
V + V M P +
Sbjct: 404 EVPEDVPMEPEDDR 417
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 28.0 bits (62), Expect = 9.7
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 174 VSITPNVPKGISMTPNVPRGISMTPNVSKGVSMTPNVSKGVSM-TPNVPKSVSLTPNVPK 232
+TP+V P+ S + VS S TP+ S+ P++ + + + K
Sbjct: 166 ERMTPDVSSTSEHIPSSNTSPSTSEPVSTLRSPTPSSKSSSSLGLPDLSSTSDWSGMINK 225
Query: 233 GVSITPNVPKGVTMT 247
++ P
Sbjct: 226 EFTLQPKSASLPPYK 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.126 0.360
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,230,538
Number of extensions: 1806080
Number of successful extensions: 1349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 60
Length of query: 392
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 293
Effective length of database: 6,546,556
Effective search space: 1918140908
Effective search space used: 1918140908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (26.9 bits)