RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2312
         (392 letters)



>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
           thermophilus [TaxId: 274]}
          Length = 101

 Score = 31.3 bits (71), Expect = 0.044
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 324 HRLFWETERVCQFPIDHGTSKKNLWNKKLMNTMKTKVKII--MMKMKREIMKKKRRRG-- 379
            +L  E     + P+     +K +    ++       +++      K  + K K +    
Sbjct: 23  EKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAKVQYR 82

Query: 380 KKHYHSHQLLILK 392
           +K  H      L 
Sbjct: 83  RKKGHRQPYTELL 95


>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
           coli [TaxId: 562]}
          Length = 103

 Score = 27.1 bits (60), Expect = 1.5
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 313 DISSLGGDVGDHRLFWETERVCQFPIDHGTSKKNLWNKKLMNTMKTKVKIIMMKMKREIM 372
            +  L    G+     E   V              +       +K +V       K +I+
Sbjct: 21  RLEKLDIATGE---TVEFAEVLMIANGEEVKIGVPFVD--GGVIKAEVVAHGRGEKVKIV 75

Query: 373 KKKRRRG--KKHYHSHQLLILK 392
           K +RR+   K+  H      +K
Sbjct: 76  KFRRRKHYRKQQGHRQWFTDVK 97


>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 27.2 bits (60), Expect = 3.4
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 21/127 (16%)

Query: 254 VSITPNVPKGISITPN--VSKAVSITPKTNLEESNEPMDNINNPENALIRLSSSIYTDSS 311
           +    N    +       + K +  +   + EE    ++N     +A+     +   +  
Sbjct: 100 IHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLEN----YDAIRVTHETSAHEGQ 155

Query: 312 EDISSLGGDVGDHRL--------FWETERVCQFPIDHGTSKKNLWNKKLMNTMKTKVKII 363
            +  S+   V  H +         +E +    FPI+HG +      +         +++ 
Sbjct: 156 TEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLED-------AIEVC 208

Query: 364 MMKMKRE 370
              M+R+
Sbjct: 209 KKFMERD 215


>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 163

 Score = 25.7 bits (56), Expect = 7.7
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 29 TPSVPNKIQNVSITPNPVTPKKMSGVSITPNKPQAVSTNSPLPKGISITPNVPKGI 84
              P  I+++++ P+P+       +S+        ST+ PL   + +   + K +
Sbjct: 11 EGKDPAVIRSLTLEPDPIVVPGNVTLSVV------GSTSVPLSSPLKVDLVLEKEV 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,372,937
Number of extensions: 64257
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.7 bits)