Query psy2313
Match_columns 62
No_of_seqs 152 out of 1013
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:28:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pb7_A N-methyl-D-aspartate re 99.5 1.3E-14 4.6E-19 89.4 3.5 62 1-62 68-131 (292)
2 3kg2_A Glutamate receptor 2; I 99.5 3.1E-14 1.1E-18 96.6 3.8 60 1-62 417-476 (823)
3 2rc8_A Glutamate [NMDA] recept 99.4 3.1E-14 1.1E-18 87.6 3.0 58 1-62 73-130 (294)
4 2a5s_A N-methyl-D-aspartate re 99.4 2.9E-13 1E-17 82.9 3.5 58 1-62 62-119 (284)
5 3g3k_A Glutamate receptor, ion 99.3 6.9E-13 2.4E-17 79.2 3.8 60 1-62 37-96 (259)
6 1yae_A Glutamate receptor, ion 99.3 7.5E-13 2.6E-17 81.7 3.6 60 1-62 46-105 (312)
7 2v3u_A Glutamate receptor delt 99.3 2.6E-12 9E-17 76.5 3.8 59 1-62 34-92 (265)
8 1mqi_A Glutamate receptor 2; G 99.2 4.3E-12 1.5E-16 75.9 3.8 60 1-62 37-96 (263)
9 4gvo_A LMO2349 protein; struct 98.9 4.8E-10 1.7E-14 66.8 3.0 47 1-62 36-83 (243)
10 4h5g_A Amino acid ABC superfam 98.9 1E-09 3.6E-14 65.3 3.4 47 1-62 42-88 (243)
11 3i6v_A Periplasmic His/Glu/Gln 98.7 5.8E-09 2E-13 61.5 3.3 47 1-62 32-78 (232)
12 3kzg_A Arginine 3RD transport 98.7 2.8E-08 9.5E-13 58.3 4.8 47 1-62 31-77 (237)
13 3kbr_A Cyclohexadienyl dehydra 98.6 2.4E-08 8.2E-13 58.4 3.4 47 1-62 42-88 (239)
14 3tql_A Arginine-binding protei 98.6 5.4E-08 1.9E-12 56.0 4.8 47 1-62 29-75 (227)
15 1lst_A Lysine, arginine, ornit 98.6 3E-08 1E-12 57.9 3.4 47 1-62 31-77 (239)
16 3k4u_A Binding component of AB 98.6 4E-08 1.4E-12 57.8 3.4 47 1-62 32-78 (245)
17 3del_B Arginine binding protei 98.6 4.2E-08 1.4E-12 57.5 3.4 47 1-62 38-84 (242)
18 3hv1_A Polar amino acid ABC up 98.5 5.8E-08 2E-12 57.9 3.4 47 1-62 48-94 (268)
19 2iee_A ORF2, probable ABC tran 98.5 5.8E-08 2E-12 58.4 3.2 47 1-62 51-97 (271)
20 1ii5_A SLR1257 protein; membra 98.5 5.6E-08 1.9E-12 56.3 3.0 48 1-62 32-79 (233)
21 4eq9_A ABC transporter substra 98.5 4.5E-08 1.5E-12 57.2 2.6 47 1-62 34-81 (246)
22 4dz1_A DALS D-alanine transpor 98.5 5.9E-08 2E-12 57.9 3.1 47 1-62 56-102 (259)
23 1wdn_A GLNBP, glutamine bindin 98.5 8.9E-08 3E-12 55.1 2.9 47 1-62 29-75 (226)
24 4f3p_A Glutamine-binding perip 98.5 8.7E-08 3E-12 56.6 2.9 47 1-62 50-96 (249)
25 2y7i_A STM4351; arginine-bindi 98.4 1.6E-07 5.6E-12 54.3 3.7 47 1-62 33-79 (229)
26 2q88_A EHUB, putative ABC tran 98.4 1.6E-07 5.6E-12 55.4 3.5 47 1-62 39-86 (257)
27 2pyy_A Ionotropic glutamate re 98.4 1.7E-07 5.7E-12 54.0 3.1 48 1-62 28-75 (228)
28 3mpk_A Virulence sensor protei 98.4 4.5E-07 1.6E-11 54.4 4.2 47 1-62 59-105 (267)
29 3qax_A Probable ABC transporte 98.3 5.3E-07 1.8E-11 53.2 3.3 47 1-62 58-104 (268)
30 2pvu_A ARTJ; basic amino acid 98.3 4.9E-07 1.7E-11 54.1 3.0 47 1-62 68-114 (272)
31 3h7m_A Sensor protein; histidi 98.2 6.2E-07 2.1E-11 51.9 2.7 46 1-62 38-83 (234)
32 4i62_A Amino acid ABC transpor 98.2 1E-06 3.4E-11 52.0 3.3 47 1-62 69-115 (269)
33 2yln_A Putative ABC transporte 98.2 1.4E-06 4.9E-11 52.8 3.3 47 1-62 84-131 (283)
34 1xt8_A Putative amino-acid tra 98.1 2.1E-06 7.1E-11 51.9 3.2 47 1-62 71-120 (292)
35 2v25_A Major cell-binding fact 98.1 2.4E-06 8.3E-11 50.0 2.9 47 1-62 66-115 (259)
36 2yjp_A Putative ABC transporte 98.0 3E-06 1E-10 51.5 2.5 47 1-62 82-131 (291)
37 2vha_A Periplasmic binding tra 98.0 5.4E-06 1.8E-10 49.8 3.4 47 1-62 44-97 (287)
38 3n5l_A Binding protein compone 97.3 0.00032 1.1E-08 43.6 4.7 40 2-55 25-64 (310)
39 3p7i_A PHND, subunit of alkylp 97.3 0.00041 1.4E-08 43.6 4.6 40 2-55 35-74 (321)
40 2ozz_A Hypothetical protein YH 96.8 0.00038 1.3E-08 42.7 1.5 36 12-61 43-78 (231)
41 3uif_A Sulfonate ABC transport 92.9 0.11 3.7E-06 32.1 3.5 41 5-57 37-77 (348)
42 3un6_A Hypothetical protein sa 92.3 0.092 3.1E-06 32.4 2.6 35 9-57 78-112 (341)
43 2x26_A Periplasmic aliphatic s 92.1 0.31 1.1E-05 29.2 4.8 37 7-57 25-62 (308)
44 1twy_A ABC transporter, peripl 92.1 0.71 2.4E-05 26.8 6.2 40 3-57 45-85 (290)
45 3qsl_A Putative exported prote 91.9 0.31 1.1E-05 29.4 4.5 36 8-57 59-94 (346)
46 1zbm_A Hypothetical protein AF 91.8 0.17 5.6E-06 30.2 3.2 21 35-55 45-65 (280)
47 2zzv_A ABC transporter, solute 91.5 0.82 2.8E-05 28.7 6.3 47 3-58 55-101 (361)
48 3ix1_A N-formyl-4-amino-5-amin 91.5 0.16 5.5E-06 30.5 3.0 37 5-55 26-62 (302)
49 3ksx_A Nitrate transport prote 91.1 0.49 1.7E-05 28.8 4.9 36 7-56 51-87 (324)
50 4esw_A Pyrimidine biosynthesis 90.7 0.55 1.9E-05 29.0 4.9 34 9-56 34-67 (342)
51 3jv9_A OXYR, transcriptional r 90.5 1.1 3.7E-05 24.6 5.7 40 3-57 22-62 (219)
52 2y7p_A LYSR-type regulatory pr 90.3 1.1 3.7E-05 25.3 5.7 39 3-56 26-65 (218)
53 3cvg_A Putative metal binding 90.3 0.92 3.2E-05 27.6 5.6 38 3-55 38-81 (294)
54 3ho7_A OXYR; beta-alpha-barrel 90.0 1.4 4.7E-05 24.6 5.9 24 35-58 47-70 (232)
55 4ab5_A Transcriptional regulat 89.8 0.79 2.7E-05 25.3 4.7 23 35-57 44-66 (222)
56 3oxn_A Putative transcriptiona 88.9 2 6.9E-05 24.3 6.6 40 3-57 37-77 (241)
57 2ql3_A Probable transcriptiona 88.7 1.3 4.4E-05 24.4 5.1 39 3-56 23-62 (209)
58 4ddd_A Immunogenic protein; ss 88.6 0.82 2.8E-05 28.4 4.5 41 3-57 52-96 (327)
59 2fyi_A HTH-type transcriptiona 88.4 1.3 4.6E-05 24.9 5.1 38 3-55 32-70 (228)
60 3onm_A Transcriptional regulat 87.9 1.8 6.1E-05 24.5 5.4 39 3-56 45-84 (238)
61 1i6a_A OXYR, hydrogen peroxide 87.9 1.4 4.9E-05 24.6 5.0 22 35-56 41-62 (219)
62 3pam_A Transmembrane protein; 87.3 1.9 6.5E-05 25.4 5.4 40 3-57 146-185 (259)
63 1atg_A MODA, periplasmic molyb 86.3 1.9 6.5E-05 24.0 4.9 38 3-55 17-55 (231)
64 2v25_A Major cell-binding fact 86.1 1.9 6.5E-05 24.5 4.8 39 4-56 163-201 (259)
65 3bvp_A INT, TP901-1 integrase; 86.0 2.6 8.7E-05 22.9 5.2 50 2-54 28-77 (138)
66 2h9b_A HTH-type transcriptiona 85.7 3.9 0.00013 24.3 6.3 23 35-57 126-148 (312)
67 2x7q_A Ca3427, possible thiami 85.2 1.3 4.3E-05 27.0 4.0 35 8-56 39-74 (321)
68 2hzl_A Trap-T family sorbitol/ 84.8 3.3 0.00011 25.9 5.8 46 3-57 54-99 (365)
69 3fzv_A Probable transcriptiona 84.7 3.4 0.00012 24.1 5.6 39 3-56 113-152 (306)
70 2f7l_A 455AA long hypothetical 84.4 2.3 7.8E-05 27.8 5.1 52 3-54 187-239 (455)
71 3lr1_A Tungstate ABC transport 84.2 2.9 9.8E-05 25.3 5.2 39 3-56 24-62 (236)
72 3muq_A Uncharacterized conserv 84.0 3 0.0001 25.2 5.2 39 3-56 24-62 (237)
73 3lvu_A ABC transporter, peripl 83.8 2 7E-05 25.3 4.4 40 3-57 147-186 (258)
74 2hxr_A HTH-type transcriptiona 83.7 4.1 0.00014 22.8 6.0 38 4-56 49-87 (238)
75 1us5_A Putative GLUR0 ligand b 83.6 2.2 7.4E-05 25.5 4.5 39 4-56 40-79 (314)
76 3l6g_A Betaine ABC transporter 83.4 2.8 9.5E-05 25.3 4.9 39 2-55 19-57 (256)
77 2h98_A HTH-type transcriptiona 83.4 5.4 0.00018 23.9 6.3 22 35-56 126-147 (313)
78 2pfy_A Putative exported prote 82.9 5.8 0.0002 24.1 6.3 45 3-56 23-67 (301)
79 3o6p_A Peptide ABC transporter 82.6 2.7 9.3E-05 24.3 4.5 38 4-56 118-157 (229)
80 3uw2_A Phosphoglucomutase/phos 81.3 4.6 0.00016 26.8 5.7 52 3-54 209-262 (485)
81 1ixc_A CBNR, LYSR-type regulat 81.0 6.1 0.00021 22.9 5.8 23 35-57 127-149 (294)
82 3tmg_A Glycine betaine, L-prol 80.6 4 0.00014 24.9 4.9 37 3-54 34-70 (280)
83 3kn3_A Putative periplasmic pr 80.5 4.7 0.00016 24.6 5.1 38 3-55 24-61 (242)
84 3fxq_A LYSR type regulator of 80.5 4.6 0.00016 23.8 5.1 38 4-56 111-149 (305)
85 2pfz_A Putative exported prote 80.3 5.6 0.00019 24.2 5.5 46 3-57 22-67 (301)
86 4ecf_A ABC-type phosphate tran 80.2 5.4 0.00018 23.9 5.4 24 36-59 40-63 (264)
87 1uth_A LYSR-type regulatory pr 79.6 5.6 0.00019 23.7 5.3 22 35-56 141-162 (315)
88 2g29_A Nitrate transport prote 77.9 2.7 9.3E-05 26.8 3.7 34 7-54 56-94 (417)
89 1ryo_A Serotransferrin; iron t 77.7 7.3 0.00025 24.7 5.6 29 12-54 34-62 (327)
90 1sw5_A Osmoprotection protein 77.4 3.4 0.00012 24.9 3.8 38 3-53 24-61 (275)
91 2czl_A Hypothetical protein TT 77.4 3.2 0.00011 24.4 3.7 22 35-56 37-58 (272)
92 4exl_A PBP 1, phosphate-bindin 77.2 9.4 0.00032 22.8 5.8 22 36-57 40-61 (265)
93 2rin_A Putative glycine betain 77.0 4.9 0.00017 24.6 4.5 38 3-55 25-62 (298)
94 3guv_A Site-specific recombina 76.6 7.7 0.00026 21.6 5.5 51 2-54 29-81 (167)
95 2esn_A Probable transcriptiona 76.3 6.8 0.00023 23.0 5.0 21 35-55 137-157 (310)
96 1p99_A Hypothetical protein PG 75.8 6.4 0.00022 24.3 4.8 35 5-53 57-91 (295)
97 1ixh_A Phosphate-binding prote 75.4 7.6 0.00026 23.9 5.1 25 36-60 37-61 (321)
98 2vha_A Periplasmic binding tra 75.0 7.4 0.00025 22.6 4.8 21 36-56 163-183 (287)
99 1tuo_A Putative phosphomannomu 74.3 8.8 0.0003 25.1 5.4 53 2-54 191-247 (464)
100 1al3_A Cys regulon transcripti 74.3 7 0.00024 23.3 4.7 22 35-56 129-150 (324)
101 4gl8_A Oligopeptide ABC transp 73.3 6.4 0.00022 25.6 4.6 36 6-56 392-427 (529)
102 3lhk_A Putative DNA binding pr 72.7 4 0.00014 22.9 3.1 48 2-54 25-72 (154)
103 3hn0_A Nitrate transport prote 72.1 4.9 0.00017 24.2 3.6 21 36-56 42-62 (283)
104 1wqa_A Phospho-sugar mutase; a 71.6 8.4 0.00029 25.1 4.8 50 3-54 189-241 (455)
105 3g13_A Putative conjugative tr 70.8 8.5 0.00029 21.4 4.2 50 3-54 31-81 (169)
106 2xwv_A Sialic acid-binding per 70.5 16 0.00054 22.4 6.0 45 4-57 25-69 (312)
107 4ib2_A Putative lipoprotein; p 70.5 12 0.00042 23.0 5.1 37 4-54 29-65 (252)
108 2i49_A Bicarbonate transporter 70.4 8.4 0.00029 24.9 4.6 32 9-54 61-97 (429)
109 3r26_A Molybdate-binding perip 69.5 13 0.00043 21.7 4.9 38 3-55 24-62 (237)
110 3noh_A Putative peptide bindin 69.3 13 0.00043 20.9 4.6 36 5-55 78-116 (139)
111 1h45_A Lactoferrin; metal tran 69.3 13 0.00045 23.6 5.2 30 11-54 31-60 (334)
112 3tpa_A Heme-binding protein A; 69.3 8.3 0.00028 25.2 4.4 38 4-56 375-412 (521)
113 2b4l_A Glycine betaine-binding 69.3 13 0.00044 22.6 5.1 38 3-55 183-220 (268)
114 1xs5_A 29 kDa protein, membran 68.7 11 0.00037 22.6 4.6 34 6-53 23-56 (241)
115 2hxw_A Major antigenic peptide 68.2 9.8 0.00033 21.6 4.2 38 3-56 18-55 (237)
116 3hn0_A Nitrate transport prote 67.9 6.2 0.00021 23.7 3.4 38 3-54 111-149 (283)
117 3o9p_A Periplasmic murein pept 67.0 11 0.00037 24.6 4.6 38 4-56 380-418 (519)
118 1iej_A Ovotransferrin; iron, m 66.3 8.5 0.00029 24.5 3.9 32 9-54 28-59 (332)
119 3zs6_A Periplasmic oligopeptid 66.1 13 0.00045 24.1 4.9 38 4-56 368-406 (506)
120 3m8u_A Heme-binding protein A; 66.1 9.5 0.00032 24.9 4.2 37 5-56 371-407 (522)
121 4ef1_A Pheromone COB1/lipoprot 66.0 13 0.00043 22.8 4.5 37 4-54 22-58 (246)
122 3gzg_A Molybdate-binding perip 65.9 15 0.00051 21.8 4.8 38 3-55 40-78 (253)
123 1p5d_X PMM, phosphomannomutase 64.6 11 0.00036 24.7 4.2 52 3-54 187-240 (463)
124 3gxa_A Outer membrane lipoprot 64.6 14 0.00049 23.0 4.6 35 5-53 43-77 (275)
125 2hpg_A ABC transporter, peripl 64.2 16 0.00054 22.6 4.8 44 4-56 31-74 (327)
126 2o7i_A Oligopeptide ABC transp 63.8 16 0.00056 24.3 5.1 38 4-56 393-430 (592)
127 3uif_A Sulfonate ABC transport 62.5 13 0.00044 22.7 4.1 22 35-56 153-174 (348)
128 2f5x_A BUGD; periplasmic bindi 62.5 14 0.00047 23.0 4.3 38 5-56 156-193 (312)
129 1dpe_A Dipeptide-binding prote 62.0 13 0.00043 24.1 4.2 34 8-56 372-405 (507)
130 2qpq_A Protein BUG27; alpha/be 61.8 9.2 0.00031 23.6 3.4 38 5-56 147-184 (301)
131 3un6_A Hypothetical protein sa 61.6 24 0.00082 21.4 5.3 37 4-55 170-209 (341)
132 1zu0_A Chitin oligosaccharide 61.0 19 0.00066 23.5 5.0 36 4-54 372-407 (529)
133 1jet_A OPPA, oligo-peptide bin 60.7 18 0.00062 23.5 4.8 38 4-56 378-416 (517)
134 4edp_A ABC transporter, substr 60.6 18 0.00061 21.5 4.5 38 2-54 52-92 (351)
135 1gtk_A Porphobilinogen deamina 60.6 27 0.00091 22.3 5.4 50 5-56 25-82 (313)
136 3k2d_A ABC-type metal ION tran 60.1 21 0.00072 21.8 4.7 34 7-54 28-61 (237)
137 1vr5_A Oligopeptide ABC transp 59.5 19 0.00064 23.7 4.8 37 4-55 387-423 (547)
138 2dvz_A BUGE, putative exported 59.4 12 0.00041 23.3 3.6 38 5-56 160-197 (314)
139 1xoc_A Oligopeptide-binding pr 58.6 21 0.00073 23.2 4.8 38 4-56 380-419 (520)
140 3r6u_A Choline-binding protein 58.3 27 0.00094 21.4 5.1 38 3-53 30-68 (284)
141 3cij_A UPF0100 protein AF_0094 58.2 27 0.00092 20.8 5.5 38 3-55 22-62 (295)
142 1r9l_A Glycine betaine-binding 57.3 12 0.00042 22.9 3.4 38 3-54 26-63 (309)
143 2noo_A NIKA, nickel-binding pe 55.8 32 0.0011 22.2 5.3 37 4-55 360-397 (502)
144 3mst_A Putative nitrate transp 55.7 22 0.00076 22.0 4.3 35 3-56 104-138 (244)
145 3tqw_A Methionine-binding prot 55.2 30 0.001 21.1 4.8 33 8-54 26-58 (240)
146 3ilx_A First ORF in transposon 54.6 15 0.00051 20.2 3.2 19 36-54 51-69 (143)
147 2xxp_A CPS2A; replication, pep 53.4 23 0.00077 23.0 4.3 38 4-55 52-89 (398)
148 4hjh_A Phosphomannomutase; str 53.3 39 0.0013 22.2 5.4 52 2-54 192-244 (481)
149 1pc3_A Phosphate-binding prote 52.9 16 0.00053 22.9 3.4 24 36-59 63-86 (350)
150 3cfz_A UPF0100 protein MJ1186; 52.8 34 0.0012 20.3 4.9 38 3-55 22-62 (292)
151 2grv_A LPQW; substrate-binding 52.7 30 0.001 23.3 5.0 35 4-53 430-465 (621)
152 4gd5_A Phosphate ABC transport 52.4 34 0.0012 20.2 5.3 22 38-59 75-96 (279)
153 3o66_A Glycine betaine/carniti 51.2 31 0.0011 21.1 4.5 38 3-53 27-67 (282)
154 3ecr_A Porphobilinogen deamina 51.0 39 0.0013 22.0 5.0 50 5-56 43-100 (364)
155 3isp_A HTH-type transcriptiona 50.5 32 0.0011 20.0 4.4 22 35-56 127-148 (303)
156 3cfx_A UPF0100 protein MA_0280 49.3 40 0.0014 20.1 5.7 38 3-55 22-62 (296)
157 2krc_A DNA-directed RNA polyme 49.0 3.9 0.00013 21.8 0.1 15 15-29 65-79 (99)
158 4h1x_A PBP 2, phosphate-bindin 48.1 28 0.00097 21.1 3.9 25 35-60 192-216 (265)
159 3pmg_A Alpha-D-glucose-1,6-bis 47.5 23 0.00079 23.9 3.7 51 4-54 232-285 (561)
160 3pdk_A Phosphoglucosamine muta 47.0 49 0.0017 21.7 5.2 51 2-54 208-259 (469)
161 3up9_A Putative uncharacterize 45.8 33 0.0011 21.0 4.0 33 7-53 29-61 (245)
162 1jmv_A USPA, universal stress 44.4 32 0.0011 17.7 3.5 42 3-56 68-110 (141)
163 2z08_A Universal stress protei 43.8 24 0.00083 18.2 2.9 21 36-56 87-107 (137)
164 1kfi_A Phosphoglucomutase 1; p 43.5 27 0.00091 23.5 3.5 50 3-54 245-306 (572)
165 4gl0_A LMO0810 protein; struct 43.2 52 0.0018 19.7 5.0 39 2-54 25-65 (333)
166 2qmx_A Prephenate dehydratase; 42.8 15 0.0005 22.9 2.1 22 35-56 33-54 (283)
167 3mwb_A Prephenate dehydratase; 41.7 15 0.00053 23.2 2.1 22 35-56 38-59 (313)
168 3tnj_A Universal stress protei 41.6 28 0.00095 18.1 2.9 42 3-56 75-117 (150)
169 2qmw_A PDT, prephenate dehydra 41.5 14 0.00046 22.9 1.8 22 35-56 35-56 (267)
170 3ir1_A Outer membrane lipoprot 40.4 62 0.0021 19.8 4.8 35 5-53 21-55 (245)
171 1uqw_A Putative binding protei 38.8 53 0.0018 21.3 4.3 38 4-56 364-406 (509)
172 3fd3_A Chromosome replication 38.6 45 0.0016 17.7 5.7 37 3-54 20-56 (208)
173 3cg1_A UPF0100 protein PF0080; 37.9 62 0.0021 19.0 5.0 38 3-55 22-67 (296)
174 4got_A Methionine-binding lipo 37.5 63 0.0022 19.8 4.3 35 5-53 25-59 (249)
175 2ib1_A Death domain containing 37.5 9.2 0.00032 19.8 0.5 12 4-15 21-32 (91)
176 3pu5_A Extracellular solute-bi 37.2 65 0.0022 19.1 5.0 39 2-55 24-66 (333)
177 1ngr_A P75 low affinity neurot 34.9 13 0.00043 19.0 0.8 12 4-15 24-35 (85)
178 3grc_A Sensor protein, kinase; 34.8 47 0.0016 16.7 5.7 23 36-58 38-60 (140)
179 3drf_A Oligopeptide-binding pr 34.2 57 0.002 21.7 4.0 34 8-56 433-473 (590)
180 3i3w_A Phosphoglucosamine muta 34.2 65 0.0022 20.9 4.2 50 3-54 187-237 (443)
181 2nxo_A Hypothetical protein SC 33.8 33 0.0011 20.4 2.6 20 36-55 41-60 (291)
182 3hhf_B Transcriptional regulat 33.6 30 0.001 18.5 2.3 16 42-57 47-62 (213)
183 3i42_A Response regulator rece 33.6 47 0.0016 16.4 4.9 23 36-58 35-57 (127)
184 2d3i_A Ovotransferrin; aluminu 33.5 86 0.0029 22.0 4.9 20 35-54 375-394 (686)
185 2vpn_A Periplasmic substrate b 32.9 80 0.0027 19.1 4.3 19 37-55 45-63 (316)
186 3ady_A DOTD; 3-layer(BAB) sand 32.8 43 0.0015 19.0 2.8 54 2-56 78-135 (148)
187 3ttn_A Polyamine transport pro 31.7 82 0.0028 18.6 4.8 39 2-54 19-59 (340)
188 4i1d_A ABC transporter substra 31.6 81 0.0028 18.5 4.8 40 3-55 22-63 (324)
189 2xw6_A MGS, methylglyoxal synt 31.1 47 0.0016 18.4 2.8 18 39-56 65-82 (134)
190 3vp7_A Vacuolar protein sortin 30.9 33 0.0011 20.8 2.2 23 3-25 47-70 (220)
191 3u65_B TP33 protein; tetratric 30.7 66 0.0023 19.9 3.7 45 3-56 31-81 (328)
192 3kht_A Response regulator; PSI 30.4 58 0.002 16.5 5.9 42 3-58 20-61 (144)
193 1zx0_A Guanidinoacetate N-meth 30.3 75 0.0026 18.0 3.7 20 35-54 115-134 (236)
194 3e13_X Putative iron-uptake AB 30.3 84 0.0029 18.3 5.1 37 3-54 18-58 (322)
195 1kn6_A Prohormone convertase 1 29.2 34 0.0012 17.7 1.8 14 2-15 24-37 (90)
196 3ttm_A Polyamine transport pro 29.1 94 0.0032 18.5 4.8 39 2-54 22-62 (346)
197 3na5_A Phosphoglucomutase; iso 27.9 1E+02 0.0035 20.8 4.4 50 3-54 267-326 (570)
198 3gr5_A ESCC; secretin, type II 27.2 53 0.0018 18.4 2.6 41 2-45 27-67 (156)
199 3gt7_A Sensor protein; structu 26.9 73 0.0025 16.5 5.1 23 36-58 39-61 (154)
200 3hv2_A Response regulator/HD d 26.9 72 0.0025 16.4 4.9 23 36-58 46-68 (153)
201 2dbf_A Nuclear factor NF-kappa 26.8 17 0.00059 19.2 0.4 13 4-16 33-45 (100)
202 4euo_A ABC transporter, substr 25.6 1.1E+02 0.0037 18.1 4.6 39 3-55 20-60 (320)
203 4eqb_A Spermidine/putrescine A 25.4 1.1E+02 0.0038 18.1 4.9 39 2-54 23-63 (330)
204 1blf_A Lactoferrin; transferri 25.4 1.6E+02 0.0054 20.7 5.1 35 6-54 360-394 (689)
205 3s99_A Basic membrane lipoprot 25.2 93 0.0032 19.5 3.7 42 4-55 50-93 (356)
206 2qsx_A Putative transcriptiona 24.8 93 0.0032 17.0 3.7 12 43-54 60-71 (218)
207 2kl8_A OR15; structural genomi 24.6 75 0.0026 15.8 2.9 16 4-19 61-76 (85)
208 2lpm_A Two-component response 23.4 76 0.0026 16.8 2.7 21 38-58 43-63 (123)
209 2zay_A Response regulator rece 23.2 84 0.0029 15.9 4.0 23 36-58 40-62 (147)
210 2kxa_A Haemagglutinin HA2 chai 23.0 20 0.00068 15.0 0.2 9 35-43 12-20 (30)
211 3cg4_A Response regulator rece 22.6 84 0.0029 15.7 5.3 23 36-58 39-61 (142)
212 1wmg_A Netrin receptor UNC5H2; 22.6 27 0.00093 18.3 0.7 15 4-18 34-48 (103)
213 1b93_A Protein (methylglyoxal 22.6 1.1E+02 0.0039 17.2 3.8 18 39-56 73-90 (152)
214 2y9k_A Protein INVG; protein t 22.4 80 0.0027 17.0 2.7 42 2-46 11-53 (137)
215 2l69_A Rossmann 2X3 fold prote 22.4 37 0.0013 18.3 1.2 25 2-26 40-64 (134)
216 3hgm_A Universal stress protei 22.2 90 0.0031 15.9 4.4 21 36-56 98-118 (147)
217 3lua_A Response regulator rece 22.0 88 0.003 15.7 5.2 23 36-58 37-60 (140)
218 3f6p_A Transcriptional regulat 21.9 84 0.0029 15.4 5.4 23 36-58 34-56 (120)
219 1cb6_A Protein (lactoferrin); 21.8 2.1E+02 0.0073 20.1 5.2 33 8-54 27-59 (691)
220 3kto_A Response regulator rece 21.7 89 0.0031 15.6 3.2 22 37-58 39-60 (136)
221 2dko_A Caspase-3; low barrier 21.6 1.1E+02 0.0039 16.8 4.3 18 2-19 44-61 (146)
222 2gm3_A Unknown protein; AT3G01 21.6 1E+02 0.0036 16.4 4.1 36 9-56 97-132 (175)
223 2qr3_A Two-component system re 21.4 89 0.003 15.5 4.5 23 36-58 35-57 (140)
224 2a6c_A Helix-turn-helix motif; 21.4 23 0.00077 17.1 0.2 18 2-19 62-79 (83)
225 2zfd_B Putative uncharacterize 21.2 54 0.0018 17.7 1.8 17 2-18 47-63 (123)
226 1pyo_A Caspase-2; apoptosis, c 21.2 1.2E+02 0.0042 17.1 3.8 18 2-19 61-78 (167)
227 4hs7_A Bacterial extracellular 21.2 1.5E+02 0.0052 18.1 4.8 41 3-54 59-100 (420)
228 2gkg_A Response regulator homo 21.0 85 0.0029 15.1 4.5 23 36-58 37-59 (127)
229 1pot_A POTD, spermidine/putres 21.0 1.3E+02 0.0044 17.7 3.6 39 2-54 18-59 (325)
230 3s3t_A Nucleotide-binding prot 20.9 97 0.0033 15.8 3.6 21 36-56 95-116 (146)
231 3p45_A Caspase-6; protease, hu 20.6 1.4E+02 0.0046 17.3 4.3 18 2-19 72-89 (179)
232 2rjn_A Response regulator rece 20.6 1E+02 0.0034 15.8 5.2 23 36-58 39-61 (154)
233 3mf2_A BLL0957 protein; aminoa 20.6 57 0.002 21.0 2.0 20 2-21 215-234 (346)
234 3p9n_A Possible methyltransfer 20.6 1.2E+02 0.0039 16.5 4.1 22 35-56 100-121 (189)
235 1sbp_A Sulfate-binding protein 20.3 1.4E+02 0.0048 17.3 5.5 32 11-55 32-64 (310)
236 3orh_A Guanidinoacetate N-meth 20.1 1.4E+02 0.0047 17.1 3.8 21 35-55 115-135 (236)
237 3cg0_A Response regulator rece 20.1 96 0.0033 15.4 4.7 23 36-58 42-64 (140)
No 1
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.49 E-value=1.3e-14 Score=89.39 Aligned_cols=62 Identities=40% Similarity=0.826 Sum_probs=55.3
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCC--CcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQ--KDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~--~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++||+|+++..+|++||..++.++ ++.|++++++|.+|++|++++++++|++|
T Consensus 68 vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R 131 (292)
T 1pb7_A 68 IDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNER 131 (292)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHH
Confidence 589999999999999999999999999875311 14899999999999999999999999876
No 2
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.46 E-value=3.1e-14 Score=96.63 Aligned_cols=60 Identities=40% Similarity=0.765 Sum_probs=56.4
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++||+|+++.++|++||...++ +++|++++++|.+|++|++++++++|++|
T Consensus 417 ~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~--~g~~~~~~~~l~~~~~D~~~~~~~~t~~R 476 (823)
T 3kg2_A 417 VDLAAEIAKHCGFKYKLTIVGDGKYGARDAD--TKIWNGMVGELVYGKADIAIAPLTITLVR 476 (823)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCCCCBCTT--TCCBCHHHHHHHTTSCSEECSCCBCCHHH
T ss_pred HHHHHHHHHHcCCcEEEEEccCCcccccCCC--CCchhhHHHhhccccCcEEecceecchhh
Confidence 5899999999999999999999999998775 68999999999999999999999999886
No 3
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.45 E-value=3.1e-14 Score=87.60 Aligned_cols=58 Identities=48% Similarity=0.985 Sum_probs=54.2
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++||+|+++..+|++||.... +.|++++++|.+|++|++++++++|++|
T Consensus 73 vdll~~ia~~lg~~~~~~~~~~~~~g~~~~----~~w~~~~~~l~~g~~D~~~~~~~~t~eR 130 (294)
T 2rc8_A 73 IDLLEQLAEDMNFDFDLYIVGDGKYGAWKN----GHWTGLVGDLLSGTANMAVTSFSINTAR 130 (294)
T ss_dssp HHHHHHHHHHHTEEEEEEECTTCCCCCEET----TEECHHHHHHHHTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCCcEEEEECCCCcccccCC----CCHHHHHHHHHCCCcCEEEeccccCHhH
Confidence 589999999999999999999999998664 7899999999999999999999999876
No 4
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.37 E-value=2.9e-13 Score=82.88 Aligned_cols=58 Identities=33% Similarity=0.784 Sum_probs=53.8
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|++++|++++|++|+++..++++||...+ ++|++++.+|.+|++|++++++++|++|
T Consensus 62 ~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~----~~~~~~~~~l~~g~~D~~~~~~~~t~~R 119 (284)
T 2a5s_A 62 IDILKKLSRTVKFTYDLYLVTNGKHGKKVN----NVWNGMIGEVVYQRAVMAVGSLTINEER 119 (284)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSSSSCCEET----TEECHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHCCCCEEEEEccCCccCcccC----CCHHHHHHHHhcCCcCEEEEEEEEeccc
Confidence 589999999999999999999999998753 7899999999999999999999999876
No 5
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.34 E-value=6.9e-13 Score=79.21 Aligned_cols=60 Identities=32% Similarity=0.699 Sum_probs=54.9
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++|++++++..+++.||...+. +++|++++.+|.+|++|++++++++|++|
T Consensus 37 vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~--~~~~~~~~~~l~~g~~D~~~~~~~~t~eR 96 (259)
T 3g3k_A 37 IDLLRELSTHLGFTYEIRLVEDGKYGAQDDV--NGQWNGMVRELIDHKADLAVAPLAITYVR 96 (259)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTCCCCCBCTT--TCCBCHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCcCcccCC--CCcchHHHHHHhcCcccEEEeeeEecccc
Confidence 5899999999999999999999999988752 37899999999999999999999999886
No 6
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.33 E-value=7.5e-13 Score=81.70 Aligned_cols=60 Identities=32% Similarity=0.682 Sum_probs=54.9
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++|++|+++..+++.||...+. +..|++++.+|.+|++|++++++++|++|
T Consensus 46 vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~l~~g~~D~~~~~~~~t~eR 105 (312)
T 1yae_A 46 IDLLRELSTILGFTYEIRLVEDGKYGAQDDV--NGQWNGMVRELIDHKADLAVAPLAITYVR 105 (312)
T ss_dssp HHHHHHHHHHHCCEEEEEECSSCCCCCBCTT--TCCBCSHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCCccceeccC--CCcchHHHHHHhCCCcCEEeecceechhh
Confidence 5899999999999999999999999998751 37899999999999999999999999886
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.28 E-value=2.6e-12 Score=76.47 Aligned_cols=59 Identities=32% Similarity=0.756 Sum_probs=54.2
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++|++++++..+++.||.... +..|++++.+|.+|++|++++++++|++|
T Consensus 34 ~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~g~~D~~~~~~~~t~~R 92 (265)
T 2v3u_A 34 IDVLDALSNYLGFNYEIYVAPDHKYGSPQE---DGTWNGLVGELVFKRADIGISALTITPDR 92 (265)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCCCCCBCT---TSCBCHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCCcEEEEEccCCcccccCC---CCCcchHHHHHHcCCcCeEEeeeEeehhh
Confidence 589999999999999999999999998765 47899999999999999999999999876
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.25 E-value=4.3e-12 Score=75.85 Aligned_cols=60 Identities=40% Similarity=0.765 Sum_probs=54.3
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++|++++++..+++.||...++ +..|++++.+|.+|++|++++++++|++|
T Consensus 37 ~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~l~~g~~D~~~~~~~~t~~R 96 (263)
T 1mqi_A 37 VDLAAEIAKHCGFKYKLTIVGDGKYGARDAD--TKIWNGMVGELVYGKADIAIAPLTITLVR 96 (263)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTCCCCCBCTT--TCCBCHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCceEEEEEccccccCccCCC--CCCcHHHHHHHHcCCcCEEEEeeEecHHH
Confidence 5899999999999999999988999988874 23799999999999999999999999876
No 9
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.93 E-value=4.8e-10 Score=66.79 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=43.3
Q ss_pred ChHHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|+++| |++++++. ..|+.++.+|.+|++|++++++++|++|
T Consensus 36 vdl~~~ia~~l~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~eR 83 (243)
T 4gvo_A 36 VELVKEIDKRLPGYKFKFKT---------------MDFSNLLVSLGAGKVDIVAHQMEKSKER 83 (243)
T ss_dssp HHHHHHHHHTCTTEEEEEEE---------------CCGGGHHHHHHTTSCSEECSCCBCCHHH
T ss_pred HHHHHHHHHhccCCeEEEEE---------------CCHHHHHHHHHCCCCCEecccCCCCHHH
Confidence 58999999998 99999986 4799999999999999999999999887
No 10
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.89 E-value=1e-09 Score=65.33 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=43.8
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||+++|++++|++++++. ..|+.++.+|.+|++|++++++++|++|
T Consensus 42 vdl~~~ia~~lg~~~~~~~---------------~~~~~~~~~l~~g~~d~~~~~~~~t~eR 88 (243)
T 4h5g_A 42 IDMAQAIADELGVKLEILS---------------MSFDNVLTSLQTGKADLAVAGISATDER 88 (243)
T ss_dssp HHHHHHHHHHHTSEEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhCCceEEec---------------ccHHHHHHHHHcCCCCcccccccCChhH
Confidence 5899999999999999986 4799999999999999999999999887
No 11
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.74 E-value=5.8e-09 Score=61.49 Aligned_cols=47 Identities=17% Similarity=0.439 Sum_probs=43.2
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 32 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 78 (232)
T 3i6v_A 32 RELGDELCKRAGLTCEWVK---------------NDWDSIIPNLVSGNYDTIIAGMSITDER 78 (232)
T ss_dssp HHHHHHHHHHHTCCEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCCceEEEE---------------CCHHHHHHHHHCCCCCEEEeCCcCCHHH
Confidence 5899999999999999986 4799999999999999999999998876
No 12
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.68 E-value=2.8e-08 Score=58.29 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=43.3
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 31 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 77 (237)
T 3kzg_A 31 IDLMQEICRRLHATCTFEA---------------YIFDDLFPALKNREVDLVIASMIITDER 77 (237)
T ss_dssp HHHHHHHHHHTTCEEEEEE---------------ECGGGHHHHHHTTSSSEECSSCBCCTTG
T ss_pred HHHHHHHHHHhCCceEEEE---------------cCHHHHHHHHhCCCCCEEEEccccChhH
Confidence 4899999999999999986 3699999999999999999999999886
No 13
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.62 E-value=2.4e-08 Score=58.42 Aligned_cols=47 Identities=15% Similarity=0.397 Sum_probs=42.7
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 42 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 88 (239)
T 3kbr_A 42 VDMAQRLAESLGAKLVVVP---------------TSWPNLMRDFADDRFDIAMSGISINLER 88 (239)
T ss_dssp HHHHHHHHHHTTCEEEEEE---------------CCTTTHHHHHHTTCCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHHCCceEEEE---------------eCHHHHHHHHHCCCcCEEEeCCcCCHHH
Confidence 4899999999999999986 4799999999999999998999988765
No 14
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.62 E-value=5.4e-08 Score=56.05 Aligned_cols=47 Identities=13% Similarity=0.424 Sum_probs=43.0
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 29 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 75 (227)
T 3tql_A 29 ADIVKAVCKQMQAVCTISN---------------QPWDSLIPSLKLGKFDALFGGMNITTAR 75 (227)
T ss_dssp HHHHHHHHHHTTCEEEEEE---------------CCHHHHHHHHHHTSCSEECSSCBCCTTG
T ss_pred HHHHHHHHHHhCCeEEEEe---------------CCHHHHHHHHhCCCCCEEEecCcCCHhH
Confidence 4899999999999999986 4699999999999999998899988876
No 15
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.60 E-value=3e-08 Score=57.86 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=42.3
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++++|++++++. ..|+.++..|.+|++|+++++++.|++|
T Consensus 31 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 77 (239)
T 1lst_A 31 IDLGNEMCKRMQVKCTWVA---------------SDFDALIPSLKAKKIDAIISSLSITDKR 77 (239)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHHCCeEEEEe---------------CCHHHHHHHHhCCCCCEEEECcCcCHHH
Confidence 4899999999999999986 4799999999999999999888888765
No 16
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.57 E-value=4e-08 Score=57.84 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=42.5
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 32 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 78 (245)
T 3k4u_A 32 VDLAREMAKAMGVKLKLVP---------------TSWDGLIPGLVTEKFDIIISGMTISQER 78 (245)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhCCeEEEEE---------------ccHHHHHHHHhCCCcCEEEecCcCCHHH
Confidence 5899999999999999986 4699999999999999998889888765
No 17
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.57 E-value=4.2e-08 Score=57.45 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=42.4
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 38 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 84 (242)
T 3del_B 38 IDLAREISNKLGKTLDVRE---------------FSFDALILNLKQHRIDAVITGMSITPSR 84 (242)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCGGGHHHHHHTTSSSEECSSBBCCHHH
T ss_pred HHHHHHHHHHcCCceEEEE---------------cCHHHHHHHHhCCCcCEEEecCcCCHHH
Confidence 4899999999999999986 3799999999999999999889888765
No 18
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.53 E-value=5.8e-08 Score=57.91 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=42.5
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++.+++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 48 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 94 (268)
T 3hv1_A 48 IDLANAVFKLYGIDVEWQA---------------IDWDMKETELKNGTIDLIWNGYSVTDER 94 (268)
T ss_dssp HHHHHHHHHTTTCEEEEEE---------------CCGGGHHHHHHHTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhCCcEEEEE---------------CCHHHHHHHHHCCCCCEEEecCccCHHH
Confidence 4899999999999999986 4699999999999999999889888765
No 19
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.52 E-value=5.8e-08 Score=58.42 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=42.5
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++++|++++++. ..|+.++..|.+|++|+++++++.|++|
T Consensus 51 ~dl~~~i~~~~g~~v~~~~---------------~~~~~~~~~l~~G~~D~~~~~~~~t~~r 97 (271)
T 2iee_A 51 VEVVREAAKRLGLKVEFKE---------------MGIDGMLTAVNSGQVDAAANDIDVTKDR 97 (271)
T ss_dssp HHHHHHHHHHTTCEEEEEE---------------CCSTTHHHHHHHTSSSEECSSCBCCHHH
T ss_pred HHHHHHHHHHcCCeEEEEE---------------CCHHHHHHHHHCCCcCEEEeCCcCChhh
Confidence 4899999999999999986 3699999999999999999888888765
No 20
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=98.52 E-value=5.6e-08 Score=56.29 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=42.1
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++|++++++.. ..|..++..|.+|++|+++++++.+++|
T Consensus 32 ~dl~~~i~~~~g~~~~~~~~--------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 79 (233)
T 1ii5_A 32 LDVWRAVAESQKWNSEYVRQ--------------NSISAGITAVAEGELDILIGPISVTPER 79 (233)
T ss_dssp HHHHHHHHHHHTCCEEEEEC--------------SCHHHHHHHHHTTSCSEEEEEEECCHHH
T ss_pred HHHHHHHHHHcCCcEEEEEe--------------CCHHHHHHHHHCCCcCEEEeeeecCccc
Confidence 47999999999999999863 3799999999999999999888877654
No 21
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.52 E-value=4.5e-08 Score=57.23 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=42.4
Q ss_pred ChHHHHHHHHcC-CeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELE-FDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~-f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++| ++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 34 ~dl~~~i~~~~g~~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 81 (246)
T 4eq9_A 34 IEVVRAIFKDSDKYDVKFEK---------------TEWSGVFAGLDADRYNMAVNNLSYTKER 81 (246)
T ss_dssp HHHHHHHHTTCSSEEEEEEE---------------CCHHHHHHHHHTTSCSEECSSCCCCHHH
T ss_pred HHHHHHHHHHcCCceEEEEe---------------CCHHHHHHHHhCCCcCEEecccccChhh
Confidence 589999999999 9999986 4799999999999999999888888765
No 22
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.51 E-value=5.9e-08 Score=57.94 Aligned_cols=47 Identities=21% Similarity=0.590 Sum_probs=42.5
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++++|++++++. ..|+.++..|.+|++|+++++++.|++|
T Consensus 56 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 102 (259)
T 4dz1_A 56 LELFSSYCQSRHCKLNITE---------------YAWDGMLGAVASGQADVAFSGISITDKR 102 (259)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCHHHHHHHHHHTSSSEEEEEEECCHHH
T ss_pred HHHHHHHHHHhCCeEEEEE---------------cCHHHHHHHHhCCCCCEEEECCcCCHHH
Confidence 4899999999999999986 4799999999999999999998888765
No 23
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.47 E-value=8.9e-08 Score=55.10 Aligned_cols=47 Identities=28% Similarity=0.555 Sum_probs=41.4
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++|++++++. ..|..++..|.+|++|+++++++.|++|
T Consensus 29 ~dl~~~~~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 75 (226)
T 1wdn_A 29 VDLWAAIAKELKLDYELKP---------------MDFSGIIPALQTKNVDLALAGITITDER 75 (226)
T ss_dssp HHHHHHHHHHHTCCEEEEE---------------ECGGGHHHHHHTTSSSEEEEEEECCHHH
T ss_pred HHHHHHHHHHhCCEEEEEE---------------CCHHHHHHHHhCCCCCEEEEcCcCCHHH
Confidence 4899999999999999986 3699999999999999999888777654
No 24
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.47 E-value=8.7e-08 Score=56.62 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=42.2
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++.+|.+|++|+++++++.|++|
T Consensus 50 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 96 (249)
T 4f3p_A 50 LDLWAEIAKGAGWTYKIQP---------------MDFAGLIPALQTQNIDVALSGMTIKEER 96 (249)
T ss_dssp HHHHHHHHHHHTCCEEEEE---------------ECGGGHHHHHHTTSCSEEEEEEECCHHH
T ss_pred HHHHHHHHHHcCCceEEEe---------------cCHHHHHHHHHCCCCCEEEeccccCHHH
Confidence 4899999999999999986 3699999999999999999888887765
No 25
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=98.45 E-value=1.6e-07 Score=54.28 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=41.6
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++++|++++++. ..|..++..|.+|++|+++++++.|++|
T Consensus 33 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 79 (229)
T 2y7i_A 33 IDVANAVCKEMQAECSFTN---------------QSFDSLIPSLRFKKFDAVIAGMDMTPKR 79 (229)
T ss_dssp HHHHHHHHHHTTCEEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhCCeEEEEE---------------cCHHHHHHHHhCCCceEEEecCccCHHH
Confidence 4899999999999999986 4699999999999999998888877654
No 26
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=98.43 E-value=1.6e-07 Score=55.43 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=41.6
Q ss_pred ChHHHHHHHHcCCe-EEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFD-FHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~-~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++ ++++. ..|..++..|.+|++|+++++++.|++|
T Consensus 39 ~dl~~~i~~~~g~~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 86 (257)
T 2q88_A 39 PDVAREIFKRLGVADVVASI---------------SEYGAMIPGLQAGRHDAITAGLFMKPER 86 (257)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---------------CCGGGHHHHHHTTSCSEECSCCBCCHHH
T ss_pred HHHHHHHHHHcCCCeeeEEe---------------CCHHHHHHHHHCCCcCEEEecccCCHHH
Confidence 48999999999998 88875 4699999999999999998888887765
No 27
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.41 E-value=1.7e-07 Score=54.01 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=41.8
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++|++++++.. ..|..++..|.+|++|+++++++.+++|
T Consensus 28 ~dl~~~~~~~~g~~~~~~~~--------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 75 (228)
T 2pyy_A 28 IDLWRSIATQIGIESKLIEY--------------SSVPELISAIKDNKVNLGIAAISITAER 75 (228)
T ss_dssp HHHHHHHHHHHTCCEEEEEC--------------SSHHHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhCCcEEEEEc--------------CCHHHHHHHHHCCCcCEEEeccccCHHH
Confidence 48999999999999999874 2699999999999999999888877654
No 28
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.35 E-value=4.5e-07 Score=54.35 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=41.2
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++.. ..|..++.+|.+|++|++. +++.|++|
T Consensus 59 ~dl~~~i~~~lg~~~~~~~~--------------~~~~~~~~~l~~G~~D~~~-~~~~t~~r 105 (267)
T 3mpk_A 59 AAVLQLLQLRTGLDFEIIGV--------------DTVEELIAKLRSGEADMAG-ALFVNSAR 105 (267)
T ss_dssp HHHHHHHHHHHCCEEEEEEE--------------SSHHHHHHHHHHTSCSEEE-EEECCGGG
T ss_pred HHHHHHHHHHHCCeEEEEec--------------CCHHHHHHHHHCCCccEEe-cccCChhh
Confidence 48999999999999999853 3699999999999999965 78888776
No 29
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.29 E-value=5.3e-07 Score=53.21 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=41.8
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++|++++++. ..|..++..|.+|++|+++++++.+++|
T Consensus 58 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 104 (268)
T 3qax_A 58 IDLAKAISEKLGKQLEVRE---------------FAFDALILNLKKHRIDAILAGMSITPSR 104 (268)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCGGGHHHHHHHTSSSEECSCCBCCHHH
T ss_pred HHHHHHHHHHhCCeEEEEe---------------cCHHHHHHHHhCCCccEEeecCccCHhH
Confidence 4799999999999999986 4799999999999999999888887664
No 30
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.27 E-value=4.9e-07 Score=54.15 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=41.3
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++++|++++++. ..|..++..|.+|++|+++++++.+++|
T Consensus 68 ~dl~~~i~~~~g~~v~~~~---------------~~~~~~~~~l~~G~~D~~~~~~~~~~~r 114 (272)
T 2pvu_A 68 VDLLDAVMKAAGLDYELKN---------------IGWDPLFASLQSKEVDMGISGITITDER 114 (272)
T ss_dssp HHHHHHHHHHHTCCEEEEE---------------CCHHHHHHHHHHTSSSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhCCceEEEE---------------CCHHHHHHHHhCCCCCEEEeCCcCCHHH
Confidence 4899999999999999986 3599999999999999999888777654
No 31
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.23 E-value=6.2e-07 Score=51.86 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=39.8
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+||++++++++|++++++. ..|..++..|.+|++|++ ++++.+++|
T Consensus 38 ~dl~~~i~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~-~~~~~~~~r 83 (234)
T 3h7m_A 38 VELTRAIAEVMGMTVEFRL---------------GAWSEMFSALKSGRVDVL-QGISWSEKR 83 (234)
T ss_dssp HHHHHHHHHHHTCCEEEEE---------------ECGGGHHHHHHTTSSSEE-EEEECCHHH
T ss_pred HHHHHHHHHHcCCceEEEe---------------CCHHHHHHHHhCCCeeEE-EeccCCHhH
Confidence 4899999999999999985 469999999999999995 677777654
No 32
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.20 E-value=1e-06 Score=52.01 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=41.6
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++|++++++. ..|..++..|.+|++|+++++++.+++|
T Consensus 69 ~dl~~~~~~~~g~~~~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~r 115 (269)
T 4i62_A 69 IELAKAIATELGVELELSP---------------MSFDNVLASVQSGKADLAISGVSKTDER 115 (269)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCHHHHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHHCCceEEEE---------------cCHHHHHHHHhCCCccEEecCCcCCHhH
Confidence 4799999999999999986 4799999999999999999888877654
No 33
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.15 E-value=1.4e-06 Score=52.79 Aligned_cols=47 Identities=15% Similarity=0.379 Sum_probs=41.0
Q ss_pred ChHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCcc-ccCC
Q psy2313 1 MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSV-SSTR 62 (62)
Q Consensus 1 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lti-t~eR 62 (62)
+|+++.+++++|++++++. ..|..++..|.+|++|+++++++. |.+|
T Consensus 84 ~dl~~~i~~~~G~~v~~~~---------------~~~~~~~~~l~~G~~D~~~~~~~~~t~~r 131 (283)
T 2yln_A 84 VEVTRAVAEKLGVKVEFKE---------------TQWDSMMAGLKAGRFDVVANQVGLTSPER 131 (283)
T ss_dssp HHHHHHHHHHHTCEEEEEE---------------CCGGGHHHHHHHTSCSEECSSCCCCSHHH
T ss_pred HHHHHHHHHHcCCceEEEE---------------CCHHHHHHHHHCCCcCEEEecCccCChhh
Confidence 4799999999999999986 359999999999999999988877 7654
No 34
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.10 E-value=2.1e-06 Score=51.94 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=41.0
Q ss_pred ChHHHHHHHHc---CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQEL---EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++ |++++++. ..|..++..|.+|++|+++++++.+++|
T Consensus 71 ~dl~~~i~~~~~~~g~~~~~~~---------------~~~~~~~~~l~~G~~D~~~~~~~~~~~r 120 (292)
T 1xt8_A 71 IALAKRIAKELFGDENKVQFVL---------------VEAANRVEFLKSNKVDIILANFTQTPQR 120 (292)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhccCCceEEEEE---------------cCHHHHHHHHhCCCeeEEeecCCCCcch
Confidence 47999999999 99999986 4699999999999999998888777654
No 35
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.06 E-value=2.4e-06 Score=49.99 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=40.5
Q ss_pred ChHHHHHHHHc---CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQEL---EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++ |++++++. ..|..++..|.+|++|+++++++.+++|
T Consensus 66 ~~l~~~~~~~~~~pg~~v~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~~~~~ 115 (259)
T 2v25_A 66 VDVAKLLAKSILGDDKKIKLVA---------------VNAKTRGPLLDNGSVDAVIATFTITPER 115 (259)
T ss_dssp HHHHHHHHHHHHSCTTSEEEEE---------------CCTTTHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhcCCCcceEEEE---------------cCHHHHHHHHhCCCCCEEEecCccCHHH
Confidence 37899999999 99999986 4699999999999999999887776543
No 36
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.00 E-value=3e-06 Score=51.49 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=41.0
Q ss_pred ChHHHHHHHHc---CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQEL---EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++.+++++ |++++++. ..|..++..|.+|++|+++++++.+.+|
T Consensus 82 ~dl~~~i~~~~~~~g~~v~~~~---------------~~~~~~~~~l~~G~~D~~~~~~~~~~~r 131 (291)
T 2yjp_A 82 VEIAKDLAKDLLGSPDKVEFVL---------------TEAANRVEYVRSGKVDLILANFTQTPER 131 (291)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEE---------------CCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHhccCCceEEEEE---------------ccHHHHHHHHhCCCeeEEEeCCCCChHH
Confidence 47999999999 99999986 3599999999999999999888777654
No 37
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=97.98 E-value=5.4e-06 Score=49.83 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=38.8
Q ss_pred ChHHHHHHHH----cC---CeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccCC
Q psy2313 1 MDLLENIAQE----LE---FDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSSTR 62 (62)
Q Consensus 1 idll~~la~~----l~---f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~eR 62 (62)
+|+++++++. +| ++++++. ..|..++..|.+|++|+++++++.|++|
T Consensus 44 ~dl~~~ia~~l~~~~G~~~~~v~~~~---------------~~~~~~~~~l~~g~~D~~~~~~~~t~~r 97 (287)
T 2vha_A 44 QDYSNAIVEAVKKKLNKPDLQVKLIP---------------ITSQNRIPLLQNGTFDFECGSTTNNVER 97 (287)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEEE---------------CCTTTHHHHHHTTSCSEECSSCBCCHHH
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEE---------------CCHHHHHHHHHCCCeeEEeccccCCcch
Confidence 4788888875 57 8888875 4699999999999999998888887664
No 38
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.34 E-value=0.00032 Score=43.64 Aligned_cols=40 Identities=8% Similarity=0.390 Sum_probs=35.2
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
+|++.|++++|++++++.. ..|++++..|.+|++|+++.+
T Consensus 25 ~l~~~l~k~lG~~ve~~~~--------------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 25 PFLKDMSQQTGYQVKAFFA--------------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp HHHHHHHHHHSSEEEEECC--------------SSHHHHHHHHHTTSCSEEECC
T ss_pred HHHHHHHHHhCCCEEEEeC--------------CCHHHHHHHHHcCCCCEEEEC
Confidence 5788999999999999853 479999999999999999755
No 39
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.26 E-value=0.00041 Score=43.57 Aligned_cols=40 Identities=8% Similarity=0.377 Sum_probs=35.1
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
+|++.|++++|++++++.. ..|++++..|.+|++|+++.+
T Consensus 35 ~l~~~L~k~lG~~ve~~~~--------------~~~~~~i~aL~~G~vDia~~~ 74 (321)
T 3p7i_A 35 PFLQDMEKKLGVKVNAFFA--------------PDYAGIIQGMRFNKVDIAWYG 74 (321)
T ss_dssp HHHHHHHHHHTSCEEEECC--------------SSHHHHHHHHHTTSCSEEECC
T ss_pred HHHHHHHHHHCCCEEEEec--------------CCHHHHHHHHHcCCCcEEEEC
Confidence 4788999999999999853 479999999999999999754
No 40
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=96.84 E-value=0.00038 Score=42.67 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCccccC
Q psy2313 12 EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSST 61 (62)
Q Consensus 12 ~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ltit~e 61 (62)
|+++++... ..|++.+..|.+|++|||+++++.|++
T Consensus 43 gi~~~i~~m--------------rg~~~RI~aL~~gk~D~aI~S~~aa~e 78 (231)
T 2ozz_A 43 GIPFYYAHM--------------RGADIRVECLLNGVYDMAVVSRLAAES 78 (231)
T ss_dssp TSCEEEEEC--------------SCHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred CCcEEEEEc--------------cChHHHHHHHHcCCCCEEEEecccchh
Confidence 777777763 379999999999999999999988876
No 41
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=92.91 E-value=0.11 Score=32.14 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=28.2
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+.+++. |++++++... ..+.+..++..|.+|++|+++++.+
T Consensus 37 ~~~~~~-G~~v~~~~~~-----------~~g~~~~~~~al~~G~~D~~~~~~~ 77 (348)
T 3uif_A 37 EELRKQ-GIKVEWVPAA-----------MASVGPVINEGFASGKIDFGIYGDL 77 (348)
T ss_dssp HHHHHT-TEEEEEEEEC-----------TTCHHHHHHHHHHTTCCCEEEEESH
T ss_pred HHHHhc-CCeEEEEecc-----------cCCCcHHHHHHHHcCCCCEEecCcH
Confidence 455554 8888884321 0134667999999999999986543
No 42
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=92.28 E-value=0.092 Score=32.38 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 9 QELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 9 ~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
++.|++++++.. ..|..++..|.+|++|+++++.+
T Consensus 78 ~~~G~~Ve~~~~--------------~~~~~~~~al~~G~~D~~~~~~~ 112 (341)
T 3un6_A 78 NHPKYKLELVKF--------------NNWPDLMDALNSGRIDGASTLIE 112 (341)
T ss_dssp SSCSSEEEEEEC--------------SSHHHHHHHHHTTSSSEEEEEHH
T ss_pred HHcCCcEEEEEc--------------CCHHHHHHHHHcCCCCEEecchH
Confidence 556888888753 46999999999999999987764
No 43
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=92.15 E-value=0.31 Score=29.20 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=28.0
Q ss_pred HHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 7 IAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 7 la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+.+.+ |++++++.. ..+..++..|.+|++|+++++.+
T Consensus 25 ~~~~~~g~~v~~~~~--------------~~~~~~~~~l~~G~~D~~~~~~~ 62 (308)
T 2x26_A 25 LEKRYPESKISWVEF--------------PAGPQMLEALNVGSIDLGSTGDI 62 (308)
T ss_dssp HHHHCTTSEEEEEEC--------------SSHHHHHHHHHHTSCSEEEECSH
T ss_pred HhHhcCCCceEEEEC--------------CCcHHHHHHHHCCCCCEEcccCc
Confidence 45555 888888753 23478999999999999987653
No 44
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=92.12 E-value=0.71 Score=26.83 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
++..+.++. ++++++.. +....++..|.+|++|+++....
T Consensus 45 ~l~~f~~~~P~i~v~i~~---------------~~~~~~~~~l~~g~~Di~i~~~~ 85 (290)
T 1twy_A 45 LAEKYNQQHPETYVAVQG---------------VGSTAGISLLKKGVADIAMTSRY 85 (290)
T ss_dssp HHHHHHHHCTTCEEEEEE---------------SCHHHHHHHHHTTSCSEEEESSC
T ss_pred HHHHHHhhCCCceEEEEe---------------cCcHHHHHHHhcCCCcEEEecCC
Confidence 456666665 77888764 45678899999999999997643
No 45
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=91.85 E-value=0.31 Score=29.42 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 8 AQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 8 a~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
.++.|++++++.. ..|..++..|.+|++|+++++..
T Consensus 59 ~~~~g~~v~~~~~--------------~~~~~~~~~l~~G~~D~~~~~~~ 94 (346)
T 3qsl_A 59 FKDEGLDVSIADF--------------AGGSKALQAVVGGSADVVSGAFE 94 (346)
T ss_dssp HHHTTCEEEEEEC--------------SSHHHHHHHHHTTSCSEEEEETH
T ss_pred hHhhCCeEEEEec--------------CChHHHHHHHHCCCCCEEccchH
Confidence 3567888888742 46899999999999999987764
No 46
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=91.75 E-value=0.17 Score=30.21 Aligned_cols=21 Identities=0% Similarity=-0.007 Sum_probs=18.5
Q ss_pred cchhhHHHhhhcCCccEEEeC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~ 55 (62)
+.|+.++..|.+|++|+++.+
T Consensus 45 ~~~~~~~~~l~~G~~D~~~~~ 65 (280)
T 1zbm_A 45 EDIETLNRKAFNAEYEVTAIS 65 (280)
T ss_dssp CCHHHHHHHGGGTCCSEEEEE
T ss_pred CCHHHHHHHHHcCCCCEEEEC
Confidence 469999999999999999864
No 47
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=91.51 E-value=0.82 Score=28.74 Aligned_cols=47 Identities=9% Similarity=-0.050 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCcc
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lti 58 (62)
+.+.+.++.+=++++...+.++. |.+..++..|..|.+|+++.+.+.
T Consensus 55 fa~~v~e~t~G~v~i~v~~~g~L---------g~~~~~~e~v~~G~id~~~~~~~~ 101 (361)
T 2zzv_A 55 FTERVKELTDGQLEVQPFPAGAV---------VGTFDMFDAVKTGVLDGMNPFTLY 101 (361)
T ss_dssp HHHHHHHHTTTSEEEEEECTTSS---------SCGGGHHHHHHHTSSSEEECBGGG
T ss_pred HHHHHHHhcCCeEEEEEeCCCcc---------cCHHHHHHHHHcCceeEEEecccc
Confidence 45667777776666665443322 457889999999999999877543
No 48
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=91.47 E-value=0.16 Score=30.52 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=28.7
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
+-+.++.|++++++.. ..+..++..|.+|++|+++++
T Consensus 26 ~g~~~~~Gl~v~~~~~--------------~~~~~~~~~l~~G~~D~~~~~ 62 (302)
T 3ix1_A 26 NGYFAEEGLDVDIVFP--------------TNPTDPIQLTASGAIPLALSY 62 (302)
T ss_dssp TTHHHHTTEEEEEECC--------------SSTTHHHHHHHHTSCSEEEEC
T ss_pred cChHHHcCCcEEEecC--------------CCCchHHHHHHCCCCCEEecC
Confidence 3456778888888742 334589999999999999876
No 49
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=91.07 E-value=0.49 Score=28.77 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=27.5
Q ss_pred HHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 7 IAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 7 la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+.+.+ |++++++.. ..|..++..|.+|++|+++.+.
T Consensus 51 ~~~~~~g~~v~~~~~--------------~~~~~~~~al~~G~~D~~~~~~ 87 (324)
T 3ksx_A 51 LEQRFPRTKITWVEF--------------PAGPQLLEALNVGSIDLGGAGD 87 (324)
T ss_dssp HHHHCTTSEEEEEEE--------------SSHHHHHHHHHTTSCSEEEEES
T ss_pred HHHhcCCCceEEEEC--------------CCHHHHHHHHHCCCCCEEeecC
Confidence 34444 888888753 3688999999999999987654
No 50
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=90.68 E-value=0.55 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 9 QELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 9 ~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++.|++++++.. ..+..++..|.+|++|+++++.
T Consensus 34 ~e~GLdVei~~~--------------~~~~~~~~al~sG~~D~g~~~~ 67 (342)
T 4esw_A 34 KDENLDIAILEP--------------SNPSDVTELVGSGKVDMGLKAM 67 (342)
T ss_dssp HHTTCEEEEEEE--------------SSGGGHHHHHHHTSSSEEEEEH
T ss_pred HHcCCeEEEEeC--------------CChHHHHHHHHcCCcCEEEecH
Confidence 456789998864 4678899999999999998764
No 51
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=90.50 E-value=1.1 Score=24.64 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
++..+.+.. +.++++.. +....+...|.+|++|+++....
T Consensus 22 ~l~~~~~~~P~i~i~i~~---------------~~~~~~~~~l~~g~~Dl~i~~~~ 62 (219)
T 3jv9_A 22 LIVSLRRTAPKMPLMLEE---------------NYTHTLTESLKRGDVDAIIVAEP 62 (219)
T ss_dssp HHHHHHHHSTTCCEEEEE---------------ECHHHHHHHHHHTSSSEEEEESS
T ss_pred HHHHHHHHCCCcEEEEEe---------------CCcHHHHHHHHcCCCCEEEEcCC
Confidence 445555443 67777764 45678999999999999997654
No 52
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=90.35 E-value=1.1 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++..+.++. +.++++.. +....++..|.+|++|+++...
T Consensus 26 ~l~~f~~~~P~v~l~l~~---------------~~~~~l~~~L~~g~iDl~i~~~ 65 (218)
T 2y7p_A 26 LMEALAQRAPHIQISTLR---------------PNAGNLKEDMESGAVDLALGLL 65 (218)
T ss_dssp HHHHHHHHCTTCEEEEEC---------------CCTTTHHHHHHHTSSCEEEECC
T ss_pred HHHHHHHHCCCCEEEEEe---------------CCcccHHHHHhCCCceEEEecC
Confidence 344455443 66777763 4567899999999999999753
No 53
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=90.26 E-value=0.92 Score=27.57 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHH---c---CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 3 LLENIAQE---L---EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~---l---~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
++..+.++ . +.++++.. +.-..++..|.+|++|+++..
T Consensus 38 ll~~F~~~~~~~~~P~v~v~l~~---------------~~s~~l~~~l~~G~~Dl~i~~ 81 (294)
T 3cvg_A 38 LADAFIKSKVDSGSAPFKVAWYK---------------SDTTVTINYLKDGIVDVGITY 81 (294)
T ss_dssp HHHHHHHHHHSCC---CEEEEEE---------------CCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHhhhcccCCCCeEEEEEe---------------CCHHHHHHHHHcCCCcEEEEc
Confidence 55666666 5 77777775 456789999999999999875
No 54
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=89.97 E-value=1.4 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.1
Q ss_pred cchhhHHHhhhcCCccEEEeCCcc
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~lti 58 (62)
+....+...|.+|++|+++.....
T Consensus 47 ~~~~~~~~~l~~g~~Dl~i~~~~~ 70 (232)
T 3ho7_A 47 MQTSRCLASLLSGEIDMAIIASKA 70 (232)
T ss_dssp CCHHHHHHHHHHTSCSEEEESSCC
T ss_pred CCHHHHHHHHHcCCCCEEEEcCCC
Confidence 467889999999999999987643
No 55
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=89.79 E-value=0.79 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.1
Q ss_pred cchhhHHHhhhcCCccEEEeCCc
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+....+...|.+|++|+++....
T Consensus 44 ~~~~~~~~~l~~g~~Di~i~~~~ 66 (222)
T 4ab5_A 44 GFQADPVGLLLQHRADLAIVSEA 66 (222)
T ss_dssp CCCSCTHHHHHTTSCSEEEESCC
T ss_pred CCHHHHHHHHHcCCcCEEEecCC
Confidence 45678899999999999998654
No 56
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=88.90 E-value=2 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
++..+.+.. +.++++.. +....++..|.+|++|+++....
T Consensus 37 ~l~~f~~~~P~i~l~~~~---------------~~~~~~~~~l~~g~~Dl~i~~~~ 77 (241)
T 3oxn_A 37 ALPRIYQEAPNVSFNFLP---------------LQHDRLSDQLTYEGADLAICRPT 77 (241)
T ss_dssp HHHHHHHHCTTCEEEEEE---------------CCGGGHHHHHHTSCCSEEEECCS
T ss_pred HHHHHHHHCCCCEEEEEE---------------CCcccHHHHHHcCCCCEEEecCC
Confidence 445555443 67777764 45778999999999999998543
No 57
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=88.71 E-value=1.3 Score=24.39 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.5
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++..+.+.. +.++++.. .....+...|.+|++|+++...
T Consensus 23 ~l~~f~~~~P~i~i~l~~---------------~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 23 MLYAFTAEYPRASVEFRE---------------DTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp HHHHHHHHCTTEEEEEEE---------------CCHHHHHHHHHTTSCSEEEEES
T ss_pred HHHHHHHHCCCceEEEEE---------------CcHHHHHHHHHcCCccEEEEec
Confidence 445555544 56666654 4577889999999999998643
No 58
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=88.61 E-value=0.82 Score=28.39 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=29.7
Q ss_pred HHHHHHHH----cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQE----LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~----l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
|.+.+++. .|+++++... +...+.+..|.+|++|++++...
T Consensus 52 la~~l~~~~~~~~g~~v~v~~~--------------~g~~~~i~~l~~g~~D~~~~~~~ 96 (327)
T 4ddd_A 52 ICRFIASDYGKDNKIICSISST--------------TGSVYNLNSIRYSNMDISIVQSD 96 (327)
T ss_dssp HHHHHHHHHGGGTSEEEEEECC--------------CCHHHHHHHHHTTSCSEEEEEHH
T ss_pred HHHHHHhccCCCCCeEEEEEec--------------CcHHHHHHHHHcCCCcEEEECcH
Confidence 45566666 6777777632 34678889999999999987643
No 59
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=88.43 E-value=1.3 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=27.2
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
++..+.+.. +.++++.. +....++..|.+|++|+++..
T Consensus 32 ~l~~f~~~~P~v~l~l~~---------------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 32 VIKAFRELFPEVRLELIQ---------------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp HHHHHHHHCTTEEEEEEE---------------CCHHHHHHHHHHTSCSEEEES
T ss_pred HHHHHHHHCCCcEEEEEe---------------CCHHHHHHHHHcCCccEEEEe
Confidence 445555544 55566653 457789999999999999975
No 60
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=87.91 E-value=1.8 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++..+.+.. +.++++.. +....+...|.+|++|+++...
T Consensus 45 ~l~~f~~~~P~i~l~i~~---------------~~~~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 45 LLNRVATLYPRLAIDVRV---------------KRSPFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp HHHHHHHHCTTCCEEEEE---------------CCHHHHHHHHHHTSCSEEEECS
T ss_pred HHHHHHHHCCCcEEEEEE---------------CCHHHHHHHHHCCCccEEEEec
Confidence 344454443 67777764 5678899999999999999754
No 61
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=87.89 E-value=1.4 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.5
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
+....++..|.+|++|+++...
T Consensus 41 ~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 41 AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp CCHHHHHHHHHHTSCSEEEEEC
T ss_pred CChHHHHHHHHcCCeeEEEecC
Confidence 4678899999999999998643
No 62
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=87.27 E-value=1.9 Score=25.44 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+++.-.+++|+++++.. ..|..+...+..|+.|+++.+..
T Consensus 146 ~iq~~l~~iGI~v~i~~---------------~~~~~~~~~~~~~~~d~~~~~w~ 185 (259)
T 3pam_A 146 AFQSNLSRLGIHAEIRT---------------VDDSQYQNRLGMFNYDMIIGKLK 185 (259)
T ss_dssp HHHHHHHTTTCEEEEEE---------------CCHHHHHHHHHHTCCSEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEe---------------cCHHHHHHHHhcCCeeEEEeccC
Confidence 34444456899999986 36888888888999999887543
No 63
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=86.31 E-value=1.9 Score=24.00 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCC-ccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT-AHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~-~D~av~~ 55 (62)
+++...++-+.++++.. +.-..++..|.+|+ +|++++.
T Consensus 17 ~~~~F~~~p~i~v~~~~---------------~~s~~l~~~l~~g~~~Dv~~~~ 55 (231)
T 1atg_A 17 LAGQFAKQTGHAVVISS---------------GSSGPVYAQIVNGAPYNVFFSA 55 (231)
T ss_dssp HHHHHHHHHCCCEEEEE---------------ECHHHHHHHHHTTCCCSEEECS
T ss_pred HHHHHHhccCCeEEEEE---------------CCcHHHHHHHHcCCCCCEEEeC
Confidence 45555555688888864 34467888888998 9998864
No 64
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=86.08 E-value=1.9 Score=24.47 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++.+.+..|++++++.. .+...++..|.+|++|.++...
T Consensus 163 ~~~~~~~~g~~~~~~~~--------------~~~~~~~~~l~~g~vDa~~~~~ 201 (259)
T 2v25_A 163 IGEAAKKIGIDVKFSEF--------------PDYPSIKAALDAKRVDAFSVDK 201 (259)
T ss_dssp HHHHHHHTTCCCEEEEE--------------SSHHHHHHHHHTTSSSEEEEEH
T ss_pred HHHHHHhcCCceeEEEe--------------CCHHHHHHHHHcCCCcEEEecH
Confidence 44555556776555543 3568899999999999988753
No 65
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=86.00 E-value=2.6 Score=22.95 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=33.2
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+.+++.|+..|+...-++.+.+.-|.... -..|..|+..+..|++|..+.
T Consensus 28 ~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~---Rp~l~~ll~~~~~g~~d~lvv 77 (138)
T 3bvp_A 28 DRLTKYAEAMGWQVSDTYTDAGFSGAKLE---RPAMQRLINDIENKAFDTVLV 77 (138)
T ss_dssp HHHHHHHHHTTCEEEEEEEEETCCSSSSC---CHHHHHHHHGGGGTSCSEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCcCCCCC---CHHHHHHHHHHHhCCCCEEEE
Confidence 35677788889886544444333443221 136999999999999997663
No 66
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=85.71 E-value=3.9 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.8
Q ss_pred cchhhHHHhhhcCCccEEEeCCc
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+....++..|.+|++|+++....
T Consensus 126 ~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 126 MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp CCHHHHHHHHHTTSCSEEEESSC
T ss_pred CCHHHHHHHHHcCCCCEEEEeCC
Confidence 45678899999999999997543
No 67
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=85.18 E-value=1.3 Score=27.02 Aligned_cols=35 Identities=6% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHcCCeEEEEEecCCcccceeccCCCcchh-hHHHhhhcCCccEEEeCC
Q psy2313 8 AQELEFDFHLYIVADGLYGTKVRENQKDKWN-GVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 8 a~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~-g~ig~l~~g~~D~av~~l 56 (62)
.++.|++++++..+ ... .++..|.+|++|+++++.
T Consensus 39 ~~~~Gl~V~~~~~~--------------~g~~~~~~al~~G~~D~~~~~~ 74 (321)
T 2x7q_A 39 YKAHDLSIEFVKVP--------------EGSGRLINLLNSNEVDIAIGLT 74 (321)
T ss_dssp HHHTTCCEEEEECT--------------TCHHHHHHHHHTTSCSEEEEEH
T ss_pred HHHCCceEEEEECC--------------CCHHHHHHHHHcCCccEEecCc
Confidence 45678888887532 233 378999999999998765
No 68
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=84.81 E-value=3.3 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+.+.+.+..|-++++...+.++. +....++..|..|.+|++..+.+
T Consensus 54 fa~~v~e~s~G~v~i~~~~~g~L---------g~~~~~~eav~~G~iD~~~~~~~ 99 (365)
T 2hzl_A 54 LSKMLSEATDGNFQIQVFSAGEL---------VPGLQAADAVTEGTVECCHTVGY 99 (365)
T ss_dssp HHHHHHHHTTTSSEEEEECTTTS---------SCGGGHHHHHHTTSSSEEEECGG
T ss_pred HHHHHHHhcCCeEEEEEecCCcc---------cCHHHHHHHHHcCccceeecchh
Confidence 34566666765555554443332 35678999999999999987653
No 69
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=84.67 E-value=3.4 Score=24.14 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++..+.+.. ++++++.. +....++..|.+|++|+++..-
T Consensus 113 ~l~~f~~~~P~i~i~l~~---------------~~~~~~~~~l~~g~~Dl~i~~~ 152 (306)
T 3fzv_A 113 LIAGFRQAYPGVEIRIRD---------------GEQQELVQGLTSGRFDLAFLYE 152 (306)
T ss_dssp HHHHHHHHCTTEEEEEEE---------------ECHHHHHHHHHHTSCSEEEECS
T ss_pred HHHHHHHHCCCeEEEEEe---------------CCHHHHHHHHHCCCccEEEEec
Confidence 344444444 56666654 4678889999999999998754
No 70
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=84.40 E-value=2.3 Score=27.78 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCeEEEE-EecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLY-IVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~-~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++..+.+++|+++..+ ..+|+.|+..+|+-+......+...+...++|++++
T Consensus 187 ~~~~~l~~lG~~v~~~~~~pDg~F~~~~p~p~~~~l~~l~~~v~~~~adlgia 239 (455)
T 2f7l_A 187 STPLVARALGCKIYTINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGVA 239 (455)
T ss_dssp THHHHHHHTTCEEEEBSCSCCTTCTTSCSSCCTTTSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCEEEEECCcCCCCCCCCCcCcchHHHHHHHHHHHHcCCCEEEE
Confidence 5677888999976544 345777774344322344677778888899999875
No 71
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=84.19 E-value=2.9 Score=25.31 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
|+....++.+.++++... .-..++..+.+|.+|++++.-
T Consensus 24 L~~~Fek~~gv~V~~~~~---------------gSg~ll~qi~~G~aDV~isa~ 62 (236)
T 3lr1_A 24 LLPPFEKKNNVKVDVIAV---------------GTGQALKLGEAGDVDVVFVHA 62 (236)
T ss_dssp HHHHHHHHHTCEEEEEEE---------------CHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHhCCeEEEEEc---------------ChHHHHHHHhcCCCCEEeecC
Confidence 455566666888888762 334578889999999998754
No 72
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=84.02 E-value=3 Score=25.22 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
|+....++.++++++... .=..++..+.+|.+|++++.-
T Consensus 24 L~~~Fek~~gv~V~~~~~---------------gSg~ll~qi~~G~aDv~isa~ 62 (237)
T 3muq_A 24 LLPQFEKDTGYKVDVIAA---------------GTGKALKMGENGDVDLVMTHA 62 (237)
T ss_dssp HHHHHHHHHCCEEEEEEE---------------CHHHHHHHHHTTSSSEEEECC
T ss_pred HHHHHHHHhCceEEEEEc---------------ChHHHHHHHhcCCCCEEEecC
Confidence 555566666888888762 234577889999999998653
No 73
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=83.81 E-value=2 Score=25.28 Aligned_cols=40 Identities=5% Similarity=-0.052 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+++.-.+++|+++++... .|..+...+..|+.|+++.+..
T Consensus 147 ~iq~~l~~iGi~v~i~~~---------------~~~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 147 IYTRALERLGIAAQIEKV---------------DNAQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHTTTCCCEEEEE---------------CHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHcCCeeEEEec---------------CHHHHHHHhccCCccEEEecCC
Confidence 344444558999999863 5888888888999999886543
No 74
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=83.71 E-value=4.1 Score=22.80 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=26.5
Q ss_pred HHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+..+.+.. +.++++.. +....++..|.+|++|+++...
T Consensus 49 l~~f~~~~P~v~l~~~~---------------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 49 MADFYARYPSITLQLQE---------------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp HHHHHHHCTTSCEEEEE---------------CCHHHHHHHHHTTSCSEEEEES
T ss_pred HHHHHHhCCCcEEEEEE---------------CCHHHHHHHHHcCCCcEEEEcC
Confidence 44444443 56666664 4567888999999999998753
No 75
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=83.61 E-value=2.2 Score=25.50 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=26.3
Q ss_pred HHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
.+.+.++ .|.++++... +....++..|.+|++|+++...
T Consensus 40 a~~~~~~~~g~~v~v~~~--------------~~~~~~~~~l~~g~~Dl~~~~~ 79 (314)
T 1us5_A 40 AKLVNDANVGIRANARST--------------GGSVANINAINAGEFEMALAQN 79 (314)
T ss_dssp HHHHHHHTSSEEEEEECC--------------SCHHHHHHHHHTTSCSEEEEEH
T ss_pred HHHHHhcCCCceEEEEec--------------CcHHHHHHHHHcCCCcEEEEcc
Confidence 3445543 5776666521 3466788999999999988643
No 76
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=83.44 E-value=2.8 Score=25.26 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=28.3
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
.+++.+-+.+|++++++. +.-.-+..+|.+|++|+....
T Consensus 19 ~i~~~~Le~~G~~Ve~~~---------------~~~~~~~~al~~G~iD~~~e~ 57 (256)
T 3l6g_A 19 NVLTQAMKEHGFDVKTTA---------------LDNAVAWQTVANGQADGMVSA 57 (256)
T ss_dssp HHHHHHHHHTTEEEEEEE---------------CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHCCCceEEEE---------------CChHHHHHHHHCCCCeEEEcc
Confidence 356666677899988864 233567889999999997643
No 77
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=83.42 E-value=5.4 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.4
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
+....+...|.+|++|+++...
T Consensus 126 ~~~~~~~~~l~~g~~Dlai~~~ 147 (313)
T 2h98_A 126 CGTKDQINALKQGKIDLGFGRL 147 (313)
T ss_dssp CCHHHHHHHHHHTSCSEEEESS
T ss_pred CChHHHHHHHHcCCCCEEEEeC
Confidence 4567889999999999999754
No 78
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=82.90 E-value=5.8 Score=24.12 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+.+.+.++.|=++++...+.++.| .-..++..|..|.+|++..+.
T Consensus 23 fa~~v~e~s~G~i~i~~~~~g~Lg---------~~~~~~e~v~~G~id~~~~~~ 67 (301)
T 2pfy_A 23 FADEVKAATAGALEIKVQSNSTLL---------KRPEVKRGVQQGVVQIGEVLV 67 (301)
T ss_dssp HHHHHHHHTTTSEEEEEECTTSSS---------CGGGHHHHHHHTSSSEEEEEG
T ss_pred HHHHHHHHcCCeEEEEEccchhhC---------ChHHHHHHHHCCCeeeehhhh
Confidence 456677777888888776654433 346789999999999997664
No 79
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=82.65 E-value=2.7 Score=24.27 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHHHHH-c-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQE-L-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~-l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++.-.++ + |+++++... .|..+...+..|+.|+++.+.
T Consensus 118 i~~~l~~~i~GI~v~i~~~---------------~~~~~~~~~~~g~~d~~~~~w 157 (229)
T 3o6p_A 118 VQGSIQDALDGVKVTVSPV---------------PFSVRLDRSNKGDFDAVIGGW 157 (229)
T ss_dssp HHHHHHHHSTTEEEEEEEE---------------CHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHhCCCcEEEEEec---------------CHHHHHHHhhcCCceEEEecc
Confidence 3444455 8 999998863 588888888899999988654
No 80
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=81.35 E-value=4.6 Score=26.81 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCeEEEE-EecCCcccceeccCC-CcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLY-IVADGLYGTKVRENQ-KDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~-~~~~~~~G~~~~~~~-~~~w~g~ig~l~~g~~D~av~ 54 (62)
++..+.+++|+++... ..+|+.|+...|+.. ......++..+...++|++++
T Consensus 209 ~~~~il~~lG~~v~~~~~~pDg~Fp~~~p~P~~~~~l~~l~~~v~~~~aDlgia 262 (485)
T 3uw2_A 209 LATRLFKALGCELVELFTDIDGNFPNHHPDPAHPENLQDVIAKLKATDAEIGFA 262 (485)
T ss_dssp HHHHHHHHTTCCEEEESCSCCTTCCSSCSCTTSGGGGHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHHcCCeEEEecCccCCCCCCCCcCCCCHHHHHHHHHHHHhhCCCEEEE
Confidence 5678889999987543 457777775444311 235677788888999999885
No 81
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=81.04 E-value=6.1 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=18.4
Q ss_pred cchhhHHHhhhcCCccEEEeCCc
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+....++..|.+|++|+++....
T Consensus 127 ~~~~~~~~~l~~g~~Dl~i~~~~ 149 (294)
T 1ixc_A 127 MTKDEQVEGLLAGTIHVGFSRFF 149 (294)
T ss_dssp CCHHHHHHHHHHTSCSEEEESCC
T ss_pred CCHHHHHHHHHCCCccEEEEecC
Confidence 34567889999999999997543
No 82
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=80.57 E-value=4 Score=24.87 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+...+-+.+|+++++.. +.-.-+..+|.+|++|+...
T Consensus 34 i~~~~Le~~G~~Ve~~~---------------~~~~~~~~AL~~G~iD~~~e 70 (280)
T 3tmg_A 34 VLKVVFEKMGYNAEIFS---------------VTTSIMYQYLASGKIDGTVS 70 (280)
T ss_dssp HHHHHHHHTTEEEEEEE---------------CCHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHCCCceEEEE---------------CCcHHHHHHHHCCCCcEEEe
Confidence 45555567899998864 22356778999999999765
No 83
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=80.49 E-value=4.7 Score=24.57 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
|+....++.++++++... .-..++..+.+|.+|+.++.
T Consensus 24 L~~~Fek~~gv~V~~~~~---------------gSg~ll~qi~~G~aDVfisa 61 (242)
T 3kn3_A 24 LAPAYKKDTGVDLKWVAV---------------GTGNALKLGENCDVDVVFVH 61 (242)
T ss_dssp HHHHHHHHHSCEEEEEEE---------------CHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHhCCeEEEEEc---------------CcHHHHHHHhcCCCCEEEec
Confidence 444555556888888762 33468889999999998764
No 84
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=80.46 E-value=4.6 Score=23.78 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+..+.+.. +.++++.. +..+.+...|.+|++|+++...
T Consensus 111 l~~f~~~~P~i~i~l~~---------------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 111 LASFAREFPDVTVNVRD---------------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp HHHHHHHCTTCEEEEEE---------------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred HHHHHHHCCCCEEEEEE---------------CCHHHHHHHHHcCCCCEEEecC
Confidence 44444443 66777764 4567889999999999999754
No 85
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=80.26 E-value=5.6 Score=24.23 Aligned_cols=46 Identities=7% Similarity=0.041 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
+.+.+.++.+=++++...+.++- +.-..++..|..|.+|++..+.+
T Consensus 22 fa~~v~~~s~G~i~i~~~~~g~L---------g~~~~~~~~v~~G~id~~~~~~~ 67 (301)
T 2pfz_A 22 FVKDVDSLSGGKLKITLHNNASL---------YKAPEIKRAVQGNQAQIGEILLT 67 (301)
T ss_dssp HHHHHHHHHTTSCEEEEECTTSS---------SCGGGHHHHHHTTSSSEEEEEGG
T ss_pred HHHHHHHHcCCeEEEEEccCccc---------CChHHHHHHHHCCceeeEechhh
Confidence 34566676666666665554433 33467899999999999987643
No 86
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=80.20 E-value=5.4 Score=23.88 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=18.9
Q ss_pred chhhHHHhhhcCCccEEEeCCccc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSVS 59 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~ltit 59 (62)
.-...+..|.+|++|+++....++
T Consensus 40 ~S~~~~~~l~~g~~Dig~~~~~~~ 63 (264)
T 4ecf_A 40 GTGTGLSQIQEGAVQIGNSDLFAG 63 (264)
T ss_dssp CHHHHHHHHHHTSSSEEEESSCGG
T ss_pred CCHHHHHHHHcCCCchhhccCCCC
Confidence 346788899999999999876544
No 87
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=79.65 E-value=5.6 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=18.1
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
+....++..|.+|++|+++...
T Consensus 141 ~~~~~~~~~l~~g~~Dl~i~~~ 162 (315)
T 1uth_A 141 PNAGNLKEDMESGAVDLALGLL 162 (315)
T ss_dssp TTSSCHHHHHHHTSCCEEEECC
T ss_pred CCcccHHHHHHCCCCCEEEecC
Confidence 4556788999999999999754
No 88
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=77.93 E-value=2.7 Score=26.82 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHcCC-eEEEEEecCCcccceeccCCCcchhhHHHhhhcCC----ccEEEe
Q psy2313 7 IAQELEF-DFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT----AHMSFA 54 (62)
Q Consensus 7 la~~l~f-~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~----~D~av~ 54 (62)
+.++.|+ +++++.. ..|..++..|.+|+ +|++..
T Consensus 56 ~~~~~Gl~~Ve~~~~--------------~~~~~~~~al~~G~~~~giD~a~~ 94 (417)
T 2g29_A 56 FYAKYGMPDVEVLKQ--------------ASWGTTRDNLVLGSASGGIDGAHI 94 (417)
T ss_dssp HHHHTTCTTCEEEEC--------------SCHHHHHHHHHHCGGGTSCSEEEE
T ss_pred chHHcCCCeeEEEec--------------CCHHHHHHHHHCCCCcCCcCeEee
Confidence 3455688 8888753 46999999999999 999986
No 89
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=77.72 E-value=7.3 Score=24.69 Aligned_cols=29 Identities=3% Similarity=-0.076 Sum_probs=24.4
Q ss_pred CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 12 EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 12 ~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+..++++.. .+....+..+.+|++|++..
T Consensus 34 ~~~vecv~~--------------~dy~~ci~ai~~g~aD~~~l 62 (327)
T 1ryo_A 34 GPSVACVKK--------------ASYLDCIRAIAANEADAVTL 62 (327)
T ss_dssp SCEEEEEEE--------------SSHHHHHHHHHTTSCCBEEE
T ss_pred CCceEEEec--------------CCHHHHHHHHHcCCCcEEEe
Confidence 667888764 46899999999999999874
No 90
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=77.42 E-value=3.4 Score=24.86 Aligned_cols=38 Identities=5% Similarity=-0.086 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
++..+-+..|+++++... -+...-++..|.+|++|+..
T Consensus 24 ~~~~~le~~G~~Ve~~~~-------------~g~~~~~~~al~~G~iD~~~ 61 (275)
T 1sw5_A 24 MIAILLEENGYKAEVKEG-------------LGGTLVNYEALKRNDIQLYV 61 (275)
T ss_dssp HHHHHHHHTTCCEEECTT-------------CCSHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHcCCcEEEEeC-------------CCchHHHHHHHHcCCCcEEE
Confidence 344455667999888630 13567788999999999987
No 91
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=77.37 E-value=3.2 Score=24.35 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=18.4
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
+.++.+...|.+|++|++..+.
T Consensus 37 ~~~~~~~~al~~G~~D~~~~~~ 58 (272)
T 2czl_A 37 EDVETLNRWALEGRLPLTKLSY 58 (272)
T ss_dssp CCHHHHHHHHHTTCCSEEEEEH
T ss_pred CCHHHHHHHHHcCCCCEEEecH
Confidence 4688899999999999997553
No 92
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=77.18 E-value=9.4 Score=22.85 Aligned_cols=22 Identities=5% Similarity=0.060 Sum_probs=17.6
Q ss_pred chhhHHHhhhcCCccEEEeCCc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lt 57 (62)
.-...+..|.+|++|++++...
T Consensus 40 gS~~gi~~l~~g~~Dig~~~~~ 61 (265)
T 4exl_A 40 GSGTGLSQVQSGAVDIGNSDVF 61 (265)
T ss_dssp CHHHHHHHHHTTSSSEEEESSC
T ss_pred CcHHHHHHHHcCCCccccccCC
Confidence 3467888899999999997644
No 93
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=77.03 E-value=4.9 Score=24.63 Aligned_cols=38 Identities=8% Similarity=0.040 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
++..+-+..|+++++.. +.-.-+...|.+|++|+....
T Consensus 25 i~~~~Le~~G~~Ve~~~---------------~~~~~~~~Al~~G~iD~~~~~ 62 (298)
T 2rin_A 25 TATTILEALGYETDVKV---------------LSVPVTYTSLKNKDIDVFLGN 62 (298)
T ss_dssp HHHHHHHHHTCEEEEEC---------------CCHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHcCCceEEEE---------------CCcHHHHHHHHcCCcEEEhhh
Confidence 34445566799998874 233557778999999998643
No 94
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=76.57 E-value=7.7 Score=21.57 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=34.2
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCC--ccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT--AHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~--~D~av~ 54 (62)
+.++..|+..|+++.-++.+.+.-|....+ -..|..|+.++..|+ +|..+.
T Consensus 29 ~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~--Rp~l~~ll~~~~~g~~~~d~lvv 81 (167)
T 3guv_A 29 SRMKAFAIYNDYEIVGEYEDAGKSGKSIEG--RIQFNRMMEDIKSGKDGVSFVLV 81 (167)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCSSSSSCC--CHHHHHHHHHHHTCTTCCSEEEE
T ss_pred HHHHHHHHhCCCEEEEEEeecCCCCCCccc--CHHHHHHHHHHHcCCCCccEEEE
Confidence 456778888899864444444445543110 136999999999999 897764
No 95
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=76.33 E-value=6.8 Score=22.98 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=17.0
Q ss_pred cchhhHHHhhhcCCccEEEeC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~ 55 (62)
+....++..|.+|++|+++..
T Consensus 137 ~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 137 AERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp CSSSCCHHHHHHTSSSEEEEC
T ss_pred CCcccHHHHHHcCCCCEEEec
Confidence 345568888999999999976
No 96
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=75.81 E-value=6.4 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
+...++.|++++++.. ..+..+..+|.+|++|++.
T Consensus 57 ~~~~~~~G~~Ve~~~f--------------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 57 KELAKKDDIDVEIKHF--------------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHGGGTCCEEEEEC--------------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHcCCeEEEEEe--------------CChHHHHHHHHcCCCCEEc
Confidence 3345566999999864 3577888999999999976
No 97
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=75.35 E-value=7.6 Score=23.85 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.5
Q ss_pred chhhHHHhhhcCCccEEEeCCcccc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSVSS 60 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~ltit~ 60 (62)
.=...+..|.+|++|++++.-.++.
T Consensus 37 gS~~~~~~l~~g~~Di~~~~~~~~~ 61 (321)
T 1ixh_A 37 GSSGGVKQIIANTVDFGASDAPLSD 61 (321)
T ss_dssp CHHHHHHHHHTTCSSEEEESSCCCH
T ss_pred CCHHHHHHHHcCCCcEEecccCCCh
Confidence 3457888899999999998776543
No 98
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=75.02 E-value=7.4 Score=22.64 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=17.8
Q ss_pred chhhHHHhhhcCCccEEEeCC
Q psy2313 36 KWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~l 56 (62)
+...++.+|.+|++|.++...
T Consensus 163 ~~~~~~~~L~~G~vDa~i~~~ 183 (287)
T 2vha_A 163 DHGDSFRTLESGRAVAFMMDD 183 (287)
T ss_dssp SHHHHHHHHHTTSCSEEEEEH
T ss_pred CHHHHHHHHHcCCeeEEEeCh
Confidence 578899999999999988653
No 99
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=74.33 E-value=8.8 Score=25.13 Aligned_cols=53 Identities=9% Similarity=0.052 Sum_probs=34.2
Q ss_pred hHHHHHHHHcCC--eEEEE-EecCCcccceeccCCCcchhhHHHhhh-cCCccEEEe
Q psy2313 2 DLLENIAQELEF--DFHLY-IVADGLYGTKVRENQKDKWNGVVGDLV-TGTAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f--~~~~~-~~~~~~~G~~~~~~~~~~w~g~ig~l~-~g~~D~av~ 54 (62)
.++..+.+++|+ ++... ..+|+.|+..+|+-+...-..+...+. ..++|++++
T Consensus 191 ~~~~~~l~~lG~~~~v~~~~~~pDg~Fp~~~p~p~~~~~~~l~~~v~~~~~adlgia 247 (464)
T 1tuo_A 191 GFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLGPETPPSFAVA 247 (464)
T ss_dssp THHHHHHHHTTCCCCEEEESCSCCTTGGGSCSCCSGGGCHHHHHHHTTCCTTCEEEE
T ss_pred HHHHHHHHHCCCCceEEEEecccCCCCCCCCcCCCchhHHHHHHHHHhccCCCEEEE
Confidence 356788889999 54333 456778776555422222345666777 789999875
No 100
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=74.30 E-value=7 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.2
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
+..+.++..|.+|++|+++...
T Consensus 129 ~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 129 GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp CCHHHHHHHHHTTCCSEEEESS
T ss_pred CCHHHHHHHHHCCCceEEEEec
Confidence 4567889999999999999753
No 101
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=73.27 E-value=6.4 Score=25.63 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 6 NIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 6 ~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
...+.+|+++++.. ..|......+.+|+.|+++.+.
T Consensus 392 ~~l~~iGI~v~i~~---------------~~~~~~~~~~~~g~~d~~~~gw 427 (529)
T 4gl8_A 392 QWKKNLNINVQLEN---------------EEWSTYINSRVNGNYEIIRSGW 427 (529)
T ss_dssp HHHHHHCCCEEEEE---------------ECHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHhcCeEEEEEe---------------ccHHHHHHHHhcCCcCEEEEec
Confidence 44567899999986 3688999999999999988654
No 102
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=72.71 E-value=4 Score=22.87 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=31.9
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+.++..+...|+.+.++ .+.+ -|.... -..|..|+..+..|++|..+.
T Consensus 25 ~~l~~~~~~~g~~v~~~-~D~~-SG~~~~---Rp~l~~ll~~~~~g~id~vvv 72 (154)
T 3lhk_A 25 QLIKSYAEENGWDIQIL-KDIG-SGLNEK---RKNYKKLLKMVMNRKVEKVII 72 (154)
T ss_dssp HHHHHHHHHTTCCCEEE-EEES-CTTCTT---CHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEE-Eecc-CCcCCC---CHHHHHHHHHHHcCCCCEEEE
Confidence 45677788888887443 3323 343211 135999999999999998764
No 103
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=72.14 E-value=4.9 Score=24.20 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=17.9
Q ss_pred chhhHHHhhhcCCccEEEeCC
Q psy2313 36 KWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~l 56 (62)
..+.+...+.+|++|++..+.
T Consensus 42 ~~~~~~~al~~G~~D~~~~~~ 62 (283)
T 3hn0_A 42 SPDLAQALLIKQETDIAVLPM 62 (283)
T ss_dssp CHHHHHHHHHTTCCSEEEEEH
T ss_pred CHHHHHHHHHCCCCCEEEEcH
Confidence 467899999999999998754
No 104
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=71.60 E-value=8.4 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCeEEEE-EecCCccc--ceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLY-IVADGLYG--TKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~-~~~~~~~G--~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++..+.+++|+++... ..+|+.++ .++|+ ...-..+...+...++|++++
T Consensus 189 ~~~~~l~~lG~~v~~~~~~pdg~f~~~~~~p~--~~~l~~l~~~v~~~~adlgia 241 (455)
T 1wqa_A 189 TLPYLLRELGCKVITVNAQPDGYFPARNPEPN--EENLKEFMEIVKALGADFGVA 241 (455)
T ss_dssp THHHHHHHHTCEEEEESCSCCTTCSSSCSCCC--TTTTHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCEEEEECCcCCCCCCCCCCCCc--hhHHHHHHHHHHHcCCCEEEE
Confidence 4677888899976544 34677776 34443 234556777777889999875
No 105
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=70.82 E-value=8.5 Score=21.40 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=29.0
Q ss_pred HHHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
.++..++. .|+++.-++.+.+.-|....+ -..|..|+..+..|++|..+.
T Consensus 31 ~~~~~a~~~~g~~~~~~~~D~g~Sg~~~~~--Rp~l~~ll~~~~~g~id~vvv 81 (169)
T 3g13_A 31 YYTDMIKKNKEWVLADIYADEAITGTQVTK--REDFQRMINDCMNGEIDMVFT 81 (169)
T ss_dssp HHHHHHHTCTTEEEEEEEEEEC------CC--SHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHCCCCeEEEEEeeCCccCCCcCC--CHHHHHHHHHHHcCCCcEEEE
Confidence 45556654 477754444444444543211 136999999999999998764
No 106
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=70.52 E-value=16 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCc
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALS 57 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lt 57 (62)
.+.+.++.|=++++...+.++.| ....++..|..|.+|++..+.+
T Consensus 25 a~~v~e~s~G~i~i~v~~~g~Lg---------~~~~~~e~v~~G~id~~~~~~~ 69 (312)
T 2xwv_A 25 AKEVKEKSQGKIEISLYPSSQLG---------DDRAMLKQLKDGSLDFTFAESA 69 (312)
T ss_dssp HHHHHHHTTTSEEEEEECTTTTC---------CHHHHHHHHHHTSCCEEEECGG
T ss_pred HHHHHHHcCCcEEEEEecCCCCC---------CHHHHHHHHHCCCceEEEeCch
Confidence 45666777767777765544433 3567899999999999986643
No 107
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=70.49 E-value=12 Score=22.96 Aligned_cols=37 Identities=8% Similarity=0.197 Sum_probs=28.9
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++.++++.|++++++.. ..|...-.+|.+|++|+...
T Consensus 29 v~~~~~k~Gi~veiv~F--------------~Dy~~pN~AL~~G~iDaN~f 65 (252)
T 4ib2_A 29 AKSILKKEGYQLEVTVF--------------DDYVQPNEVVESGEFDANYF 65 (252)
T ss_dssp HHHHHHHTTCEEEEEEC--------------SSSSHHHHHHHTTSSSEEEE
T ss_pred HHHHHHhcCCeEEEEEe--------------cChhhHHHHHHcCCcCeeec
Confidence 45566778999999975 35778888999999998653
No 108
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=70.42 E-value=8.4 Score=24.87 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHcCC-eEEEEEecCCcccceeccCCCcchhhHHHhhhcCC----ccEEEe
Q psy2313 9 QELEF-DFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT----AHMSFA 54 (62)
Q Consensus 9 ~~l~f-~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~----~D~av~ 54 (62)
++.|+ +++++.. ..|..++..|.+|+ +|++..
T Consensus 61 ~~~Gl~~Vel~~~--------------~s~~~~~~al~~G~~~~~~D~a~~ 97 (429)
T 2i49_A 61 AKYGMTGVEVSKQ--------------ANWASARDNVTIGSQGGGIDGGQW 97 (429)
T ss_dssp HHTTCCEEEEEEC--------------SSHHHHHHHHHHTGGGTSCSEEEE
T ss_pred HHcCCCeeEEEEc--------------CCHHHHHHHHHcCCCCCceeEEEe
Confidence 44678 8888753 46999999999999 999985
No 109
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=69.53 E-value=13 Score=21.65 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCC-ccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT-AHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~-~D~av~~ 55 (62)
|++...++-|.++++.. +.=..++..+..|. +|+.+++
T Consensus 24 l~~~Fe~~~gi~V~~~~---------------~~s~~l~~~i~~g~~~Dv~~~a 62 (237)
T 3r26_A 24 IATQFKKEKGVDVVSSF---------------ASSSTLARQIEAGAPADLFISA 62 (237)
T ss_dssp HHHHHHHHHCCEEEEEE---------------ECHHHHHHHHHHTCCCSEEECS
T ss_pred HHHHHHhccCCeEEEEE---------------CCHHHHHHHHHcCCCceEEEEC
Confidence 45555566688888765 22345667777776 9998864
No 110
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=69.28 E-value=13 Score=20.95 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHHHHc---CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 5 ENIAQEL---EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 5 ~~la~~l---~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
+.|++++ ||++++.. -+-.-|..-.++|++|+-+++
T Consensus 78 ~~Lc~RL~~AG~~V~lk~---------------yS~tMlrSravsGkYd~fla~ 116 (139)
T 3noh_A 78 DSLCERLNDAGADVQIKQ---------------YSGTMLRSRAVSGKYEAFLSE 116 (139)
T ss_dssp HHHHHHHHHTTCEEEEEE---------------ECHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHhcCCCceecc---------------CchHHHHHHHhcCceeEEecc
Confidence 4555554 89999875 244567778899999988765
No 111
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=69.28 E-value=13 Score=23.60 Aligned_cols=30 Identities=7% Similarity=-0.168 Sum_probs=25.0
Q ss_pred cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 11 LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 11 l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
.+..++++.. .+....+..+.+|+||++..
T Consensus 31 ~~~~vecv~~--------------~~~~~ci~aI~~g~AD~~~l 60 (334)
T 1h45_A 31 RGPPVSCIKR--------------DSPIQCIQAIAENRADAVTL 60 (334)
T ss_dssp TCCCEEEEEC--------------SSHHHHHHHHHTTSCCBEEE
T ss_pred CCCceEEEEc--------------CCHHHHHHHHHcCCCCEEEe
Confidence 3778888864 46899999999999999875
No 112
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=69.28 E-value=8.3 Score=25.21 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++.-.+++|+++++.. ..|......+..|+.|+++.+.
T Consensus 375 iq~~l~~iGI~v~i~~---------------~~~~~~~~~~~~g~~d~~~~~w 412 (521)
T 3tpa_A 375 IQADWAKIGVKAKLVT---------------HEWADFNKRTREGEFAAGTYGW 412 (521)
T ss_dssp HHHHHHHTTEEEEEEC---------------CCHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHcCceEEEEe---------------cchHHHHHHHhcCCcceEEEec
Confidence 3333455788888874 4688888888999999987654
No 113
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=69.27 E-value=13 Score=22.59 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
++..+-+.+|+++++... +. .-+...|.+|++|+.+..
T Consensus 183 v~~~~Le~~Gy~Ve~~~~--------------~~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 183 VIGKVLEDLGYEVTLTQV--------------EA-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp HHHHHHHHHTCEEEEEEC--------------CT-THHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHcCCceEEEEC--------------Ch-HHHHHHHHCCCCeEEehh
Confidence 344555678999998753 22 556778899999998543
No 114
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=68.70 E-value=11 Score=22.60 Aligned_cols=34 Identities=9% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 6 NIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 6 ~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
...++.|++++++.. ..+.....+|.+|++|+..
T Consensus 23 ~~~~~~Gl~ve~~~f--------------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 23 EEVKKQHIELRIVEF--------------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHTTTEEEEEEEC--------------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHcCCeEEEEEc--------------CChHHHHHHHHcCCCCEec
Confidence 345566999999864 3588899999999999975
No 115
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=68.23 E-value=9.8 Score=21.59 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+++...++.|+++++.. +.-..++..|. +.+|+.+++-
T Consensus 18 ~~~~F~~~~gi~V~~~~---------------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 18 IANKYSEKTGVKVNVNF---------------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHCCCEEEEE---------------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHhCceEEEEe---------------CChHHHHHHhc-cCCCEEEeCC
Confidence 45556666788888854 33445666666 7899988754
No 116
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=67.91 E-value=6.2 Score=23.74 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCc-chhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKD-KWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~-~w~g~ig~l~~g~~D~av~ 54 (62)
+++.+.++.|+.++++.. . ....+..+|.+|++|.++.
T Consensus 111 ll~~~L~~~Gldv~~~~~--------------~~~~~~~~~al~~G~vDa~~~ 149 (283)
T 3hn0_A 111 LTRYYLGRQRLDYPLNYA--------------FNTAGEITQGILAGKVNRAVL 149 (283)
T ss_dssp HHHHHHHHHTCCCCEECS--------------CCSHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHHcCCceEEEEc--------------cCCHHHHHHHHHcCCCCEEEe
Confidence 455666666775555532 2 4678999999999998875
No 117
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=66.98 E-value=11 Score=24.60 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+..-.++ +|+++++... .|......+..|+.|+++.+.
T Consensus 380 i~~~l~~~iGI~v~i~~~---------------~~~~~~~~~~~g~~d~~~~~w 418 (519)
T 3o9p_A 380 VASMWKKNLGVDVKLQNQ---------------EWKTYIDSRNTGNFDVIRASW 418 (519)
T ss_dssp HHHHHHHHHCCEEEEEEE---------------CHHHHHHHTTSSCCSEEEEEE
T ss_pred HHHHHHHhcCcEEEEEeC---------------CHHHHHHHHhCCCceEEEecc
Confidence 3333444 8999999863 588888888899999987544
No 118
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=66.35 E-value=8.5 Score=24.45 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=24.9
Q ss_pred HHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 9 QELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 9 ~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+.++..++.+.. .+....+..+.+|+||++..
T Consensus 28 ~~~~~~veCv~~--------------~s~~~Ci~aI~~g~aD~~~l 59 (332)
T 1iej_A 28 QQERISLTCVQK--------------ATYLDCIKAIANNEADAITL 59 (332)
T ss_dssp TTSSEEEEEEEC--------------SSHHHHHHHHHTTSCCBEEE
T ss_pred HhcCCceEEEEc--------------CCHHHHHHHHHcCCCcEEEe
Confidence 344666777653 46899999999999999875
No 119
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=66.14 E-value=13 Score=24.11 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=28.1
Q ss_pred HHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+..-.++ +|+++++... .|......+..|+.|+++.+.
T Consensus 368 i~~~l~~~iGI~v~i~~~---------------~~~~~~~~~~~g~~d~~~~~w 406 (506)
T 3zs6_A 368 AASEWRTKLGVTAKLENV---------------EFKVLMKQRHDGKVQIARDGW 406 (506)
T ss_dssp HHHHHHHHHCCEEEEEEE---------------CHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHhcCCEEEEEeC---------------CHHHHHHHhhcCCceEEEecc
Confidence 3333444 8999999863 588888888899999987654
No 120
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=66.06 E-value=9.5 Score=24.94 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=27.2
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++-.+++|+++++.. ..|......+..|+.|+++.+.
T Consensus 371 q~~l~~iGI~v~i~~---------------~~~~~~~~~~~~g~~d~~~~~w 407 (522)
T 3m8u_A 371 QSDWEKVGVKSKLVS---------------YEWGDYIKRTKAGELTAGTYGW 407 (522)
T ss_dssp HHHHHTTTEEEEEEC---------------CCHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHcCceEEEEe---------------ecHHHHHHHHhcCCccEEEEec
Confidence 333345788888874 4688888888999999987654
No 121
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=66.01 E-value=13 Score=22.80 Aligned_cols=37 Identities=5% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++.+.++.|++++++.. ..|.....+|.+|++|+...
T Consensus 22 v~~~l~k~Gi~veiv~F--------------~dy~~pN~AL~~G~iD~n~f 58 (246)
T 4ef1_A 22 VKPLLEKEGVKLEVTTY--------------TDYVLPNKALESGDIDANYF 58 (246)
T ss_dssp HHHHHHHTTEEEEEEEC--------------SSSSHHHHHHHHTSCSEEEE
T ss_pred HHHHHHhcCCEEEEEEe--------------CCchhHHHHHHCCCCCEEec
Confidence 34455667999999875 35777778999999998753
No 122
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=65.92 E-value=15 Score=21.84 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCC-ccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT-AHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~-~D~av~~ 55 (62)
|++...++.|.++++.. +.=..++..+..|. +|+.+++
T Consensus 40 l~~~Fe~~~gi~V~~~~---------------~~Sg~l~~qi~~g~~~DV~~sa 78 (253)
T 3gzg_A 40 AATAYEKATGTPVRVSY---------------AASSALARQIEQGAPADVFLSA 78 (253)
T ss_dssp HHHHHHHHHSCCEEEEE---------------ECHHHHHHHHHTTCCCSEEECS
T ss_pred HHHHHHHHhCCeEEEEE---------------CChHHHHHHHHcCCCceEEEEC
Confidence 44555556688888765 23345666777775 8988864
No 123
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=64.58 E-value=11 Score=24.69 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCeEEEE-EecCCcccceeccCCC-cchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLY-IVADGLYGTKVRENQK-DKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~-~~~~~~~G~~~~~~~~-~~w~g~ig~l~~g~~D~av~ 54 (62)
++..+.+++|+++... ..+|+.+....|+... .....+...+...++|++++
T Consensus 187 ~~~~ll~~lG~~v~~~~~~pDg~f~~~~p~p~~~~~l~~l~~~v~~~~adlgia 240 (463)
T 1p5d_X 187 IAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLA 240 (463)
T ss_dssp THHHHHHHHHEEEEEESCSCCTTCCSSCSCTTSGGGGHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCeEEEEeCccCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 4667778888876544 2367777654442111 33667777888899999875
No 124
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=64.56 E-value=14 Score=23.04 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=28.1
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
+.+.++.|++++++... .|.....+|.+|++|+..
T Consensus 43 k~~l~k~Gi~veiv~F~--------------Dy~~pN~AL~~G~IDaN~ 77 (275)
T 3gxa_A 43 QPELEKKGYTVKLVEFT--------------DYVRPNLALAEGELDINV 77 (275)
T ss_dssp HHHHHTTTCEEEEEEES--------------SSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHcCCeEEEEEeC--------------CcHhHHHHHHcCCCCeee
Confidence 44566789999999753 578888899999999865
No 125
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=64.17 E-value=16 Score=22.64 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
.+.+.++.|=++++...+.++.| ....++..|..|.+|++....
T Consensus 31 a~~v~e~s~G~i~i~v~~~g~Lg---------~~~~~~~av~~G~id~~~~~~ 74 (327)
T 2hpg_A 31 AKAVEEKTNGDVRIEVFPSSQLG---------VEEDIIEQIRMGAPVGWNTDS 74 (327)
T ss_dssp HHHHHHHTTTSEEEEEECCCCSC---------CCCCHHHHHHHTCSEEEEEEH
T ss_pred HHHHHHHcCCcEEEEEecCccCC---------CHHHHHHHHhCCCccEEEech
Confidence 45566767767777765554443 345789999999999987654
No 126
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A*
Probab=63.76 E-value=16 Score=24.29 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+++-.+++|+++++.. ..|......+..|+.|+++...
T Consensus 393 iq~~l~~iGI~v~i~~---------------~~~~~~~~~~~~g~~d~~~~~~ 430 (592)
T 2o7i_A 393 IAKNLRSIGIDVKTEF---------------PDFSVWADRMTKGTFDLIISWS 430 (592)
T ss_dssp HHHHHHHTTCCEEEEC---------------CCHHHHHHHHHTTCCSEEEECC
T ss_pred HHHHHHHcCCeEEEEe---------------cCHHHHHHHhhCCCceEEEecc
Confidence 4444456899999875 3588888888889999987653
No 127
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=62.50 E-value=13 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=18.1
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
..+..++.+|.+|++|.++.+-
T Consensus 153 ~~~~~~~~al~~G~vDa~~~~~ 174 (348)
T 3uif_A 153 VNPQVGAAALASGTVDGFFSLF 174 (348)
T ss_dssp CCHHHHHHHHHHTSSSEEEEST
T ss_pred CCHHHHHHHHHcCCCCEEEech
Confidence 3578899999999999987653
No 128
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=62.49 E-value=14 Score=22.96 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=27.1
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
..+.+..|++++.+.. ......+.+|..|++|+++...
T Consensus 156 ~~l~~~~Gi~~~~Vpy--------------~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 156 TMLVEALGVNLLTIPY--------------KGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp HHHHHHHTCCCEEEEC--------------SSHHHHHHHHHTTSSCEEEEEH
T ss_pred HHHHHHHCCCeEEecc--------------CChHHHHHHHHcCCccEEEech
Confidence 4566677887766532 2346789999999999988654
No 129
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=62.00 E-value=13 Score=24.12 Aligned_cols=34 Identities=6% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 8 AQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 8 a~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
.+++|+++++.. ..|......+..|+.|+++.+.
T Consensus 372 l~~iGI~v~i~~---------------~~~~~~~~~~~~~~~d~~~~~w 405 (507)
T 1dpe_A 372 WAKVGVQAKIVT---------------YEWGEYLKRAKDGEHQTVMMGW 405 (507)
T ss_dssp HHTTTEEEEEEC---------------CCHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHcCCEEEEEE---------------ecHHHHHHHhhcCCccEEEEEe
Confidence 344788887764 4688888888889999987654
No 130
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=61.82 E-value=9.2 Score=23.56 Aligned_cols=38 Identities=5% Similarity=0.014 Sum_probs=26.9
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+.+.+..|++++.+.. ......+.+|..|++|+++...
T Consensus 147 ~~l~~~~G~~~~~Vpy--------------~g~~~a~~al~~G~vD~~~~~~ 184 (301)
T 2qpq_A 147 ELLNVSAKTHMVHVPY--------------KGCGPALNDVLGSQIGLAVVTA 184 (301)
T ss_dssp HHHHHHHTCCCEEEEC--------------SSHHHHHHHHHTTSSSCEEEEH
T ss_pred HHHHHHhCCCeEEecc--------------CChHHHHHHHHCCCccEEEEcH
Confidence 3456667887766532 2346789999999999987654
No 131
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=61.58 E-value=24 Score=21.37 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=25.5
Q ss_pred HHHHHHHcCCe---EEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 4 LENIAQELEFD---FHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 4 l~~la~~l~f~---~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
++.+.+..|++ ++++. .....++.+|.+|++|.++..
T Consensus 170 ~~~~l~~~Gl~~~dv~~~~---------------~~~~~~~~al~~G~vDa~~~~ 209 (341)
T 3un6_A 170 LEELRKQLKIKPGHFSYHE---------------MSPAEMPAALSEHRITGYSVA 209 (341)
T ss_dssp HHHHHHHTTCCTTSEEEEE---------------CCGGGHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHcCCCHHHeEEEE---------------cChHHHHHHHHcCCCCEEEec
Confidence 34455667774 55554 246678899999999987754
No 132
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=60.96 E-value=19 Score=23.52 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.7
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+++-.+++|+++++.. ..|......+..|+.|++++
T Consensus 372 iq~~l~~iGI~v~i~~---------------~~~~~~~~~~~~g~~d~~~~ 407 (529)
T 1zu0_A 372 AVEQLQEVGIKAKART---------------PEFAVYNQAMLEGTYDVAYT 407 (529)
T ss_dssp HHHHHHHTTCCEEEEC---------------CCHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCeEEEEe---------------cCHHHHHhhhhCCCeeEEEe
Confidence 3444455899999875 45778888888899999863
No 133
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=60.68 E-value=18 Score=23.48 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 4 LENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
++.-.++ +|+++++... .|......+..|+.|+++.+.
T Consensus 378 iq~~l~~~iGI~v~i~~~---------------~~~~~~~~~~~~~~d~~~~~w 416 (517)
T 1jet_A 378 VASIWKKNLGVNVNLENQ---------------EWKTFLDTRHQGTFDVARAGW 416 (517)
T ss_dssp HHHHHHHHHCCEEEEEEE---------------CHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHhcCCEEEEEec---------------CHHHHHHHhhcCCceEEEecc
Confidence 3333344 8999988863 577888888889999987543
No 134
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=60.64 E-value=18 Score=21.48 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=27.2
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCC---ccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT---AHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~---~D~av~ 54 (62)
+++++..++.|++++++. +.|+.+...|..+. +|++..
T Consensus 52 ~~~~~f~~~~gi~V~~~~---------------~~~~~~~~kl~a~~~~~pDv~~~ 92 (351)
T 4edp_A 52 TVFEPFAKEHGVEIVLDI---------------GNNSERLTKMKNNPNSQIDITYL 92 (351)
T ss_dssp HTHHHHHHHHTCCEEEEE---------------CCHHHHHHHHHHCTTCCCCEEEE
T ss_pred HHHHHHHHHHCCEEEEEe---------------CCcHHHHHHHHhcCCCCCCEEEE
Confidence 356677777799999875 45777777777665 888764
No 135
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=60.64 E-value=27 Score=22.27 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHHHc-CCeEEEEEecCCcccceecc------CCCcchhh-HHHhhhcCCccEEEeCC
Q psy2313 5 ENIAQEL-EFDFHLYIVADGLYGTKVRE------NQKDKWNG-VVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 5 ~~la~~l-~f~~~~~~~~~~~~G~~~~~------~~~~~w~g-~ig~l~~g~~D~av~~l 56 (62)
+.|.+.. +.+++++... +-|-+..+ .+.|-|.. +-.+|.+|++|+||-+|
T Consensus 25 ~~L~~~~p~~~~ei~~i~--T~GD~i~d~pL~~iGgkGlFtkELe~aLl~g~iDiAVHSl 82 (313)
T 1gtk_A 25 DKLMASHPGLVVELVPMV--TRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSM 82 (313)
T ss_dssp HHHHHHCTTCEEEEEECC-------------------CTTHHHHHHHHHTTSCSEEEEEG
T ss_pred HHHHHhCCCCcEEEEeee--cCCcccccccHHHcCCccchHHHHHHHHHcCCCcEEEecC
Confidence 3444433 7788887653 22322110 12356653 55689999999999776
No 136
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=60.10 E-value=21 Score=21.76 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 7 IAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 7 la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+.++.|++++++... .|...-.+|.+|++|+...
T Consensus 28 l~~k~Gi~veiv~F~--------------Dy~~pN~AL~~G~IDaN~f 61 (237)
T 3k2d_A 28 AKEKYGLDVELVTFT--------------DYVTPNAALDDGSIDMNAF 61 (237)
T ss_dssp HHHHHCCCEEEEEES--------------CTTSHHHHHHHTSCSEEEE
T ss_pred HHHhcCCEEEEEEeC--------------ChHhHHHHHHcCCCCeecc
Confidence 344679999999753 5778888999999998653
No 137
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein; TM1223, periplasmic oligopepti binding, structural genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP: c.94.1.1
Probab=59.54 E-value=19 Score=23.71 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=27.7
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
+++-.+++|+++++.. ..|......+..|+.|+++..
T Consensus 387 iq~~l~~iGI~v~i~~---------------~~~~~~~~~~~~g~~d~~~~~ 423 (547)
T 1vr5_A 387 IAEDLVKVGINVEPKY---------------PDYSKYADDLYGGKFDLILNN 423 (547)
T ss_dssp HHHHHHTTTCCEEEEC---------------CCHHHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHhcCceEEEee---------------cCHHHHHHHhhcCceeEEEEe
Confidence 3444455799999875 458888888888999998765
No 138
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=59.38 E-value=12 Score=23.27 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+.+.+..|++++.+.. ......+.+|..|++|+++...
T Consensus 160 ~~l~~~~Gi~~~~Vpy--------------~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 160 ESFKMATGTDIVHVPY--------------KGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp HHHHHHHTCCCEEEEC--------------SSHHHHHHHHHHTSSSEEEEEH
T ss_pred HHHHHHhCCCeEEccc--------------CCHHHHHHHHHcCCceEEEEcH
Confidence 4556677887766532 1346789999999999988654
No 139
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=58.57 E-value=21 Score=23.22 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=27.5
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHh--hhcCCccEEEeCC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGD--LVTGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~--l~~g~~D~av~~l 56 (62)
++.-.+++|+++++... .|...... +..|+.|+++.+.
T Consensus 380 iq~~l~~iGI~v~i~~~---------------~~~~~~~~~~~~~g~~d~~~~~w 419 (520)
T 1xoc_A 380 VQEQLKKIGIEVKTQIV---------------EWSALVEQMNPPNWDFDAMVMGW 419 (520)
T ss_dssp HHHHHHTTTCEEEEEEE---------------CHHHHHHHHSTTTCCCSEEEEEE
T ss_pred HHHHHHhcCCEEEEEec---------------CHHHHHhhhccccCcceEEEEee
Confidence 33333567999999863 57777777 7888999987654
No 140
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=58.30 E-value=27 Score=21.39 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=26.6
Q ss_pred HHHHHHHHc-CCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 3 LLENIAQEL-EFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 3 ll~~la~~l-~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
|+..+-+.. |+++++...- |.-.-+..+|.+|++|+..
T Consensus 30 i~~~~Le~~~G~~V~~~~~l-------------g~~~~~~~al~~G~iDv~~ 68 (284)
T 3r6u_A 30 MLGQLIEHHTDLKTTTIKNL-------------GSNAVQQQALMNGEIDIAA 68 (284)
T ss_dssp HHHHHHHHHSSCCEEEEEEE-------------CSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHhcCCCCeEEEecC-------------CchHHHHHHHHcCCCCEEe
Confidence 455555555 9999998521 2344577788999999987
No 141
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=58.16 E-value=27 Score=20.76 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=24.9
Q ss_pred HHHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhc-CC-ccEEEeC
Q psy2313 3 LLENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVT-GT-AHMSFAA 55 (62)
Q Consensus 3 ll~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~-g~-~D~av~~ 55 (62)
+++...++ -|.++++.. +....++..+.. |. +|+.+++
T Consensus 22 l~~~F~~~~~gi~V~~~~---------------~~s~~l~~~i~~~g~~~Dv~~~a 62 (295)
T 3cij_A 22 FKRAFEEKHPNVEVQTEA---------------AGSAATIRKVTELGRKADVIATA 62 (295)
T ss_dssp HHHHHHHHCTTCEEEEEE---------------ECHHHHHHHHHTSCCCCSEEEES
T ss_pred HHHHHHHHCCCceEEEEe---------------CcHHHHHHHHHhCCCCCCEEEEc
Confidence 44555555 388888865 344557777777 64 8998764
No 142
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=57.34 E-value=12 Score=22.94 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+++.+-+.+|++++++.. ..-.-+...|.+|++|+...
T Consensus 26 i~~~~Le~~Gy~Ve~~~~--------------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 26 LVSRALEKLGYTVNKPSE--------------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHTTCEECCCEE--------------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHcCCCeEEeec--------------CchHHHHHHHhcCCceEEec
Confidence 445555678998877531 23355677889999999863
No 143
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=55.79 E-value=32 Score=22.22 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=26.6
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccE-EEeC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHM-SFAA 55 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~-av~~ 55 (62)
++.-.+++|+++++... .|......+..|+.|+ ....
T Consensus 360 iq~~l~~iGI~v~i~~~---------------~~~~~~~~~~~g~~d~~~~~~ 397 (502)
T 2noo_A 360 IQADMRQIGADVSLIGE---------------EESSIXARQRDGRFGMIFHRT 397 (502)
T ss_dssp HHHHHHTTTCEEEEEEE---------------CHHHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHhcCcEEEEEec---------------chHHHHhhhccCccceEEEec
Confidence 33334557999999863 5777788888899999 5543
No 144
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=55.73 E-value=22 Score=21.96 Aligned_cols=35 Identities=6% Similarity=-0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+++++.+..| .+++. ..|..++.++..|+ .|+.+.
T Consensus 104 l~R~ll~~~g--~eVvy---------------~Dw~di~~ml~~Ge--sAVva~ 138 (244)
T 3mst_A 104 NARILAYYDK--AQVIN---------------ADGDTCIKMANEGY--SALVGN 138 (244)
T ss_dssp HHHHHHHHHT--CEEEE---------------CCHHHHHHHHHTTC--EEEEET
T ss_pred HHHHHHHHhC--CeEEE---------------CCHHHHHHHHhCCC--cEEEee
Confidence 4677788888 46654 36999999999999 555544
No 145
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=55.19 E-value=30 Score=21.09 Aligned_cols=33 Identities=9% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 8 AQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 8 a~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
.++.|++++++... .|...-.+|.+|++|+...
T Consensus 26 ~~~~Gi~veiv~F~--------------Dy~~pN~AL~~G~iDaN~f 58 (240)
T 3tqw_A 26 LNRYGLHVNIITFS--------------DYNTPNEALADGSVDANMF 58 (240)
T ss_dssp HHHHCCCEEEEEES--------------CTTSHHHHHHTTSCSEEEE
T ss_pred HHhcCCeEEEEEeC--------------ChHhHHHHHHcCCcCeecc
Confidence 33679999999753 5777788899999998653
No 146
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=54.64 E-value=15 Score=20.19 Aligned_cols=19 Identities=0% Similarity=0.041 Sum_probs=16.5
Q ss_pred chhhHHHhhhcCCccEEEe
Q psy2313 36 KWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~ 54 (62)
.|..|+..+..|++|..+.
T Consensus 51 ~l~~ll~~~~~g~id~vvv 69 (143)
T 3ilx_A 51 GFLKLLRMILNNEVSRVIT 69 (143)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 5999999999999997763
No 147
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=53.41 E-value=23 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
+..|.+..+.+.+++.. ..+..++-+|.+|++|.++.+
T Consensus 52 ~~~i~~~~g~~~~~~~y--------------~~~~~a~~aL~nG~vDAiv~~ 89 (398)
T 2xxp_A 52 LADIKSSQNTDLTVNQS--------------SSYLAAYKSLIAGETKAIVLN 89 (398)
T ss_dssp HHHHHHHSCCCCEEEEC--------------SSHHHHHHHHHTTSCSCEEEE
T ss_pred HHHHHHhhCCcceEEec--------------CCHHHHHHHHHcCCCCEEEEc
Confidence 45566777765555543 369999999999999988753
No 148
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=53.34 E-value=39 Score=22.19 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=32.7
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccC-CCcchhhHHHhhhcCCccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVREN-QKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~-~~~~w~g~ig~l~~g~~D~av~ 54 (62)
.++..+-+++|+++..+.. +..+...+++. .......++..+...++|++++
T Consensus 192 ~~~~~~l~~lG~~v~~l~~-~~~f~~~~~~p~~~e~l~~l~~~v~~~~aDlgia 244 (481)
T 4hjh_A 192 DLLMYLLTTLGVEPVALGR-SDIFVPVDTEALRPEDIALLAQWGKSDRLDAIVS 244 (481)
T ss_dssp HHHHHHHHHTTCEEEEEEE-CSSCCCCCTTSCCHHHHHHHHHHHTSTTCSEEEE
T ss_pred HHHHHHHHHcCCeEEEecC-CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3567788999998766543 33333322210 0123677888888999999885
No 149
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=52.88 E-value=16 Score=22.91 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=19.1
Q ss_pred chhhHHHhhhcCCccEEEeCCccc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSVS 59 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~ltit 59 (62)
.=...+..|.+|++|++++...++
T Consensus 63 gS~~g~~~l~~g~~Di~~~~~~~~ 86 (350)
T 1pc3_A 63 GSGAGIAQAAAGTVNIGASDAYLS 86 (350)
T ss_dssp CHHHHHHHHHTTSCSEEEESSCCC
T ss_pred CCHHHHHHHHcCCCcEEeccCCCC
Confidence 345688889999999999876654
No 150
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=52.82 E-value=34 Score=20.31 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhc-CC-ccEEEeC
Q psy2313 3 LLENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVT-GT-AHMSFAA 55 (62)
Q Consensus 3 ll~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~-g~-~D~av~~ 55 (62)
+++...++ -|.++++.. +.-..++..+.. |. +|+.+++
T Consensus 22 l~~~F~~~~~gi~V~~~~---------------~~s~~l~~~i~~~g~~~Dv~~~a 62 (292)
T 3cfz_A 22 YEKMFEKEHPNVDVEREP---------------AGSVACVRKIIDLGKKADILASA 62 (292)
T ss_dssp HHHHHHHHCTTEEEEEEE---------------ECHHHHHHHHHTSCCCCSEEEES
T ss_pred HHHHHHHHCCCceEEEEe---------------CCHHHHHHHHHhcCCCCcEEEEC
Confidence 44455455 477777754 334557777777 64 8998764
No 151
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=52.66 E-value=30 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=25.2
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHh-hhcCCccEEE
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGD-LVTGTAHMSF 53 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~-l~~g~~D~av 53 (62)
++.-.+++|+++++... .|..+... +..|+.|+++
T Consensus 430 iq~~l~~iGI~v~i~~~---------------~~~~~~~~~~~~g~~d~~~ 465 (621)
T 2grv_A 430 AADQLRNVGIDASVLAL---------------DPVALYGDALVNNRVDAVV 465 (621)
T ss_dssp HHHHHHHTTCEEEEEEE---------------CHHHHHHTTTTTTCCSEEE
T ss_pred HHHHHHhcCCEEEEEec---------------ChHHhhhhcccCCceEEEE
Confidence 34444568999999863 57777766 6788899865
No 152
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=52.41 E-value=34 Score=20.23 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=17.0
Q ss_pred hhHHHhhhcCCccEEEeCCccc
Q psy2313 38 NGVVGDLVTGTAHMSFAALSVS 59 (62)
Q Consensus 38 ~g~ig~l~~g~~D~av~~ltit 59 (62)
.+.+.++..|.+|++.++-.++
T Consensus 75 g~g~~~~~~G~~di~~as~~~~ 96 (279)
T 4gd5_A 75 SAGIKNAMEGVSEIGMASRDLK 96 (279)
T ss_dssp HHHHHHHHHTSSSEEEESSCCC
T ss_pred HHHHHHHHcCCCcEEEecchhh
Confidence 4567788999999998765543
No 153
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=51.16 E-value=31 Score=21.13 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=26.0
Q ss_pred HHHHHHHHc-C--CeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 3 LLENIAQEL-E--FDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 3 ll~~la~~l-~--f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
|+..+-+.. | +++++...- |.-.-+...|.+|++|+..
T Consensus 27 i~~~~Le~~~G~~~~V~~~~~l-------------g~~~~~~~al~~G~iDv~~ 67 (282)
T 3o66_A 27 MLRLLIEHDTHGKIKPTLVNNL-------------GSSTIQHNALINGDANISG 67 (282)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEE-------------SSHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHHhccCCceeEEEEecC-------------CCcHHHHHHHHcCCCCEee
Confidence 455555554 8 998887511 3344567788999999987
No 154
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=51.03 E-value=39 Score=22.03 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHc-CCeEEEEEecCCccccee-----cc-CCCcchhh-HHHhhhcCCccEEEeCC
Q psy2313 5 ENIAQEL-EFDFHLYIVADGLYGTKV-----RE-NQKDKWNG-VVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 5 ~~la~~l-~f~~~~~~~~~~~~G~~~-----~~-~~~~~w~g-~ig~l~~g~~D~av~~l 56 (62)
+.|.+.. +++++++... +-|-+. .+ .+.|-|.. +-.+|.+|++|+||-+|
T Consensus 43 ~~L~~~~p~~~~eiv~i~--T~GD~ild~pL~~iGgKGlFtkELe~ALl~g~iDiAVHSl 100 (364)
T 3ecr_A 43 ATLKASYPGLQFEIIAMS--TTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSL 100 (364)
T ss_dssp HHHHHHCTTSEEEEEEC---------------------CCHHHHHHHHHTTSCSEEEEEG
T ss_pred HHHHHhCCCCeEEEEEee--ccCccccCCcHHHcCCceeeHHHHHHHHhcCCCCEEEECc
Confidence 3444433 6778877543 223221 10 12356655 55688999999999776
No 155
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=50.49 E-value=32 Score=19.98 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=17.9
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
.....++..|.+|++|+++..-
T Consensus 127 ~~~~~~~~~l~~g~~D~~i~~~ 148 (303)
T 3isp_A 127 EDQDHSARLLREGVAMGAVTTE 148 (303)
T ss_dssp CCHHHHHHHHHTTSCSEEEESC
T ss_pred cChHHHHHHHHcCcceEEEecC
Confidence 4566788999999999998754
No 156
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=49.27 E-value=40 Score=20.05 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=24.8
Q ss_pred HHHHHHHH-cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhc-C-CccEEEeC
Q psy2313 3 LLENIAQE-LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVT-G-TAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~-l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~-g-~~D~av~~ 55 (62)
+++...++ -|.++++.. +.-..++..+.. | .+|+.+++
T Consensus 22 l~~~F~~~~~gi~V~~~~---------------~~s~~l~~~i~~~g~~~Dv~~~a 62 (296)
T 3cfx_A 22 LEAEFEAQHPGVDVQREA---------------AGSAQSVRKITELGKKADVLASA 62 (296)
T ss_dssp HHHHHHHHSTTCEEEEEE---------------CCHHHHHHHHHTSCCCCSEEEES
T ss_pred HHHHHHHHCCCceEEEEe---------------CchHHHHHHHHhCCCCCcEEEEC
Confidence 45555555 488888864 334557777777 6 48998764
No 157
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=49.01 E-value=3.9 Score=21.84 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=10.0
Q ss_pred EEEEEecCCccccee
Q psy2313 15 FHLYIVADGLYGTKV 29 (62)
Q Consensus 15 ~~~~~~~~~~~G~~~ 29 (62)
=+|+...++.||.+.
T Consensus 65 GRFi~lGen~WgLr~ 79 (99)
T 2krc_A 65 GRFLALSDQTWGLRS 79 (99)
T ss_dssp SSCEESSSSEEECGG
T ss_pred CCeeECCCCceecCc
Confidence 346667777788753
No 158
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=48.14 E-value=28 Score=21.07 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=18.5
Q ss_pred cchhhHHHhhhcCCccEEEeCCcccc
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAALSVSS 60 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~ltit~ 60 (62)
|+-.| +.++..|.+|++.++-.++.
T Consensus 192 GSg~G-~~~~~~g~~di~~ssr~l~~ 216 (265)
T 4h1x_A 192 GSSAG-ITAVKEKTADIGMVSRELTP 216 (265)
T ss_dssp CHHHH-HHHHHHTSCSEEEESSCCCH
T ss_pred CcHHH-HHHHHcCCCceeeccccCCh
Confidence 54444 56788999999998876654
No 159
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=47.51 E-value=23 Score=23.87 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=31.4
Q ss_pred HHH-HHHHcCCeEE--EEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 4 LEN-IAQELEFDFH--LYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 4 l~~-la~~l~f~~~--~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
+.. |.+++|++.. +...+|..+|...|+.....-..+...+...++|++++
T Consensus 232 ~~~il~~~lG~~v~~~v~~~pd~~F~~~~P~P~~~~~~~L~~~v~~~~aDlgia 285 (561)
T 3pmg_A 232 VKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAA 285 (561)
T ss_dssp HHHHHTTTTCCCGGGEESCSCCTTGGGSCCCCSTTTTHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHcCCCeEEEECCEECCCCCCCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 445 3478898753 44567788876443211112245666777889999886
No 160
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=46.99 E-value=49 Score=21.72 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=31.3
Q ss_pred hHHHHHHHHcCCeEEEE-EecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 2 DLLENIAQELEFDFHLY-IVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~-~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
.++..+-+++|+++... ..+|+.+-...+. ...-..+...+...++|++++
T Consensus 208 ~~~~~ll~~lG~~v~~l~~~pDg~f~n~~~~--~~~~~~l~~~v~~~~adlgia 259 (469)
T 3pdk_A 208 SLAPYLFADLEADISTMGTSPNGMNINDGVG--STHPEVLAELVKEKGADIGLA 259 (469)
T ss_dssp THHHHHHHHTTCEEEEESCCCCSSCTTSSCS--TTSTHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCEEEEECCCcCCCCCCCCCC--CCCHHHHHHHHHhcCCcEEEE
Confidence 35678889999987654 2355555322221 112245666777889999875
No 161
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=45.75 E-value=33 Score=20.98 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 7 IAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 7 la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
++++.|++++++.- ..|...-.+|.+|++|+..
T Consensus 29 l~k~~Gi~veiv~F--------------~Dy~~pN~AL~~G~IDaN~ 61 (245)
T 3up9_A 29 LAADAGIKLDIVEY--------------TDYVQPNTALNDGDLDANF 61 (245)
T ss_dssp THHHHTEEEEEEEC--------------SSSHHHHHHHHTTSCSEEE
T ss_pred HHHHcCCeEEEEEe--------------cCcccHHHHHHcCCCceec
Confidence 44556999999875 3577778899999999765
No 162
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=44.43 E-value=32 Score=17.66 Aligned_cols=42 Identities=7% Similarity=0.053 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCeE-EEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDF-HLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~-~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
.++.+++..++.+ +..... ....+.++......++|+++.+-
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~------------g~~~~~I~~~a~~~~~dliV~G~ 110 (141)
T 1jmv_A 68 ALLDLAESVDYPISEKLSGS------------GDLGQVLSDAIEQYDVDLLVTGH 110 (141)
T ss_dssp HHHHHHHHSSSCCCCEEEEE------------ECHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCceEEEEec------------CCHHHHHHHHHHhcCCCEEEEeC
Confidence 4556666777764 222211 12467777777788899988664
No 163
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=43.75 E-value=24 Score=18.18 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=16.2
Q ss_pred chhhHHHhhhcCCccEEEeCC
Q psy2313 36 KWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~l 56 (62)
..+.++......++|+++.+-
T Consensus 87 ~~~~I~~~a~~~~~dliV~G~ 107 (137)
T 2z08_A 87 PAEAILQAARAEKADLIVMGT 107 (137)
T ss_dssp HHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEECC
Confidence 467788877788999988664
No 164
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=43.52 E-value=27 Score=23.52 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=31.8
Q ss_pred HHHHHHH-HcCCe-EEE-EEecCCcccc--eeccCCCcchhhHHHhh-------hcCCccEEEe
Q psy2313 3 LLENIAQ-ELEFD-FHL-YIVADGLYGT--KVRENQKDKWNGVVGDL-------VTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~-~l~f~-~~~-~~~~~~~~G~--~~~~~~~~~w~g~ig~l-------~~g~~D~av~ 54 (62)
++..+.+ ++|++ +.. ...+|+.|+. ++|+ ...-..+...+ ....+|++++
T Consensus 245 ~~~~il~~~lG~~~v~~l~~~pD~~Fp~~~p~P~--~~~~~~L~~~v~~~~~~a~~~~aDlgiA 306 (572)
T 1kfi_A 245 YAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPN--LTYAHDLVELLDIHKKKDVGTVPQFGAA 306 (572)
T ss_dssp HHHHHHTTTTCCCGGGEESCSCCTTGGGSCCCCS--TTTTHHHHHHTTTTCCSCGGGSCSEEEE
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCCCCCCCCCC--chhHHHHHHHHhhhhccccccCCCeEEe
Confidence 4566776 89995 543 3457788875 4443 12233566666 6789999875
No 165
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=43.21 E-value=52 Score=19.68 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=27.2
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC--CccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG--TAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g--~~D~av~ 54 (62)
++++...++.|++++++.. ++-+.|...|..| .+|+++.
T Consensus 25 ~~i~~Fek~tGIkV~~~~~--------------~s~e~~~~kl~ag~~~~DVv~~ 65 (333)
T 4gl0_A 25 SLITKFEKETGIKVIYQTF--------------DSNEAMMTKIEQGGTTFDIAVP 65 (333)
T ss_dssp HHHHHHHHHHCCEEEEEEE--------------SCHHHHHHHHHTCSSCCSEECC
T ss_pred HHHHHHHHHHCCEEEEEeC--------------CCHHHHHHHHHcCCCCCeEEEe
Confidence 4788889999999998754 2334566666655 5788753
No 166
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=42.81 E-value=15 Score=22.93 Aligned_cols=22 Identities=9% Similarity=0.293 Sum_probs=20.3
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
.++...+.+|.+|++|.+|-|+
T Consensus 33 ~s~~~vf~aV~~g~~d~gVvPi 54 (283)
T 2qmx_A 33 ESFDDVFSAVTEQKADYAVIPI 54 (283)
T ss_dssp SCHHHHHHHHHTTSCSEEEEEE
T ss_pred CCHHHHHHHHHCCCCCEEEEee
Confidence 4799999999999999999886
No 167
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=41.67 E-value=15 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.3
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
.++...+.+|.+|++|.+|-|+
T Consensus 38 ~s~~~vf~aV~~g~~d~gVvPi 59 (313)
T 3mwb_A 38 TNVNTALERVRAGEADAAMVPI 59 (313)
T ss_dssp SSHHHHHHHHHTTSCSEEEEEE
T ss_pred CCHHHHHHHHHcCCCCeeEEEE
Confidence 4799999999999999999887
No 168
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=41.64 E-value=28 Score=18.14 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCeE-EEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 3 LLENIAQELEFDF-HLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~-~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
.++.+++.+++.. +..... ....+.++......++|+++.+-
T Consensus 75 ~l~~~~~~~~~~~~~~~~~~------------g~~~~~I~~~a~~~~~dliV~G~ 117 (150)
T 3tnj_A 75 KLSQIGNTLGIDPAHRWLVW------------GEPREEIIRIAEQENVDLIVVGS 117 (150)
T ss_dssp HHHHHHHHHTCCGGGEEEEE------------SCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHcCCCcceEEEec------------CCHHHHHHHHHHHcCCCEEEEec
Confidence 4566677777662 333221 13467888887888999988653
No 169
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=41.55 E-value=14 Score=22.89 Aligned_cols=22 Identities=5% Similarity=0.160 Sum_probs=20.3
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
.++...+.+|.+|++|.+|-|+
T Consensus 35 ~s~~~v~~aV~~g~~d~gVvPi 56 (267)
T 2qmw_A 35 SNLFEVIKAVADDDTSIGVVPI 56 (267)
T ss_dssp SSHHHHHHHHHHCSSEEEEEEE
T ss_pred CCHHHHHHHHHcCCCCEEEEEe
Confidence 4799999999999999999887
No 170
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=40.38 E-value=62 Score=19.79 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
+.+.++.|++.+++... .|...-.+|.+|++|+-.
T Consensus 21 k~~l~k~Gi~leiv~F~--------------Dy~~pN~AL~~G~iDaN~ 55 (245)
T 3ir1_A 21 QPELEKKGYTVKLVEFT--------------DYVRPNLALAEGELDINV 55 (245)
T ss_dssp HHHHHTTTCEEEEEEES--------------SSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHcCceEEEEEeC--------------CcHhHHHHHHCCCcCeec
Confidence 34566779999999753 467777889999999764
No 171
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=38.77 E-value=53 Score=21.30 Aligned_cols=38 Identities=3% Similarity=0.055 Sum_probs=24.4
Q ss_pred HHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhh-----cCCccEEEeCC
Q psy2313 4 LENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLV-----TGTAHMSFAAL 56 (62)
Q Consensus 4 l~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~-----~g~~D~av~~l 56 (62)
+..-.++.|+++++... .|......+. .++.|+++.+.
T Consensus 364 iq~~l~~iGI~v~i~~~---------------~~~~~~~~~~~~~~~~~~~d~~~~~w 406 (509)
T 1uqw_A 364 TQQQLAQVGIKAQVTAM---------------DAGQRAAEVEGKGQKESGVRMFYTGW 406 (509)
T ss_dssp HHHHHHHTTEEEEEEEE---------------CHHHHHHHTTSCCTTTCCCCEEEEEE
T ss_pred HHHHHHHcCCEEEEEec---------------CHHHHHHHhhhccccCCCccEEEEec
Confidence 33334557888888753 5777777665 37888876543
No 172
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=38.56 E-value=45 Score=17.67 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++..+.++.+.++++.. +....+...|.+|..|+++.
T Consensus 20 ~l~~f~~~~~v~l~l~~---------------~~~~~~~~~l~~g~d~~~i~ 56 (208)
T 3fd3_A 20 AVSKFTGGSDYLVNIAV---------------DDQDHTVEWLRGGRVLAAVT 56 (208)
T ss_dssp HHHHHHHTSSCEEEEEE---------------CCSSCHHHHHHTTSCSEEEE
T ss_pred HHHHHHhhcCeEEEEEe---------------CCcHhHHHHHhcCcceEEEe
Confidence 55666666676777764 34567888889995554444
No 173
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=37.94 E-value=62 Score=19.05 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=24.1
Q ss_pred HHHHHH---HH-cCCeEEE--EEecCCcccceeccCCCcchhhHHHhhhc-C-CccEEEeC
Q psy2313 3 LLENIA---QE-LEFDFHL--YIVADGLYGTKVRENQKDKWNGVVGDLVT-G-TAHMSFAA 55 (62)
Q Consensus 3 ll~~la---~~-l~f~~~~--~~~~~~~~G~~~~~~~~~~w~g~ig~l~~-g-~~D~av~~ 55 (62)
+++... ++ -|+++++ .. +.-..++..|.. | .+|+.+++
T Consensus 22 ~~~~F~~~~~~~~gi~V~~~~~~---------------~~s~~l~~~i~~~g~~~Dv~~~~ 67 (296)
T 3cg1_A 22 VEKEFSEYAERNLGIKVSFQDEA---------------SGSVMAVRKVTDLGRKADVIGVA 67 (296)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEE---------------ECHHHHHHHHHTSCCCCSEEEES
T ss_pred HHHHHHHHHHhCCCceEEEEeec---------------CCHHHHHHHHHhCCCCCCEEEEC
Confidence 455555 55 6888888 53 233456666666 4 68998764
No 174
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=37.54 E-value=63 Score=19.75 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=24.9
Q ss_pred HHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEE
Q psy2313 5 ENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSF 53 (62)
Q Consensus 5 ~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av 53 (62)
+.++++-|++.+++... .|..-=.+|.+|++|+-.
T Consensus 25 k~~l~k~Gi~leiv~F~--------------Dy~~pN~AL~~G~iDaN~ 59 (249)
T 4got_A 25 EPLLKEKGYTLKVKVLS--------------DYKMYNKALADKEVDANY 59 (249)
T ss_dssp HHHHHTTTCEEEEECCS--------------STHHHHHHHHTTSCSEEE
T ss_pred HHHHHhcCCeEEEEEeC--------------CccchhHHHHcCCcceee
Confidence 34456679999998653 466666788888888653
No 175
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=37.51 E-value=9.2 Score=19.80 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHcCCeE
Q psy2313 4 LENIAQELEFDF 15 (62)
Q Consensus 4 l~~la~~l~f~~ 15 (62)
++.||++|||++
T Consensus 21 W~~LA~~Lg~~~ 32 (91)
T 2ib1_A 21 WQELAGHLGYQA 32 (91)
T ss_dssp HHHHHHHHTCCH
T ss_pred HHHHHHHcCCCH
Confidence 678999999998
No 176
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=37.17 E-value=65 Score=19.07 Aligned_cols=39 Identities=5% Similarity=-0.010 Sum_probs=25.6
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhc----CCccEEEeC
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVT----GTAHMSFAA 55 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~----g~~D~av~~ 55 (62)
++++...++.|+++++.. +.+..+...|.. ..+|++..+
T Consensus 24 ~~~~~F~~~~gi~V~~~~---------------~~~~~~~~kl~~~~~~~~~Dv~~~~ 66 (333)
T 3pu5_A 24 HMAEPFEKQSGVKVTLVP---------------GTNPAHALKILSSRGTPPYDVAAFG 66 (333)
T ss_dssp HTHHHHHHHHCCEEEEEE---------------CCHHHHHHHHHHCCSSCSCSEEEEC
T ss_pred HHHHHHHHHHCCEEEEec---------------CCCHHHHHHHHhCcCCCCCCEEEEC
Confidence 356667777799988853 356666665554 458887754
No 177
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=34.92 E-value=13 Score=18.96 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.7
Q ss_pred HHHHHHHcCCeE
Q psy2313 4 LENIAQELEFDF 15 (62)
Q Consensus 4 l~~la~~l~f~~ 15 (62)
++.||++|||++
T Consensus 24 W~~LA~~Lg~~~ 35 (85)
T 1ngr_A 24 WRHLAGELGYQP 35 (85)
T ss_dssp HHHHHHHTTCCH
T ss_pred HHHHHHHcCCCH
Confidence 688999999997
No 178
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.77 E-value=47 Score=16.74 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=18.1
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+.+
T Consensus 38 ~~~~a~~~l~~~~~dlvi~d~~l 60 (140)
T 3grc_A 38 SAAQALEQVARRPYAAMTVDLNL 60 (140)
T ss_dssp SHHHHHHHHHHSCCSEEEECSCC
T ss_pred CHHHHHHHHHhCCCCEEEEeCCC
Confidence 46677788888899999887754
No 179
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=34.18 E-value=57 Score=21.65 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHcCCeEEEE---EecCCcccceeccCCCcchhhHHHhhhcC----CccEEEeCC
Q psy2313 8 AQELEFDFHLY---IVADGLYGTKVRENQKDKWNGVVGDLVTG----TAHMSFAAL 56 (62)
Q Consensus 8 a~~l~f~~~~~---~~~~~~~G~~~~~~~~~~w~g~ig~l~~g----~~D~av~~l 56 (62)
.+++|+++++. . ..|......+..+ +.|+++.+.
T Consensus 433 l~~iGI~v~i~~~~~---------------~~~~~~~~~~~~~~~~~~~d~~~~~w 473 (590)
T 3drf_A 433 WKKIGVKVSLYNGKL---------------MEFNSWVDHMTTPPGANDWDITDGSW 473 (590)
T ss_dssp HHHTTCEEEEGGGSC---------------BCHHHHHHHHHSTTCCSSCSEEEEEE
T ss_pred HHHhCcEEEEeecCc---------------CCHHHHHHHHhcCCCCCCceEEEecc
Confidence 34689999886 3 3587888887777 899987654
No 180
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=34.16 E-value=65 Score=20.94 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCeEEEE-EecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLY-IVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~-~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++..+-+++|+++... ..+|+.+-...+. ...-..+...+....+|++++
T Consensus 187 ~~~~ll~~lG~~v~~~~~~pDg~f~n~~~~--~~~~~~l~~~v~~~~adlgia 237 (443)
T 3i3w_A 187 NFEALLDKFGINYVSIASNPDGLNINVGCG--ATCVSNIKKAVKEQKADLGIS 237 (443)
T ss_dssp HHHHHHHHTTCEEEESSCCCCSSCTTTTCS--TTCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCEEEEECCccCCCCCCCCCC--CCCHHHHHHHHHhcCCcEEEE
Confidence 5677888999976543 2245544222221 112344666777888999875
No 181
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=33.77 E-value=33 Score=20.41 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.8
Q ss_pred chhhHHHhhhcCCccEEEeC
Q psy2313 36 KWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~ 55 (62)
..+.+...|.+|++|++..+
T Consensus 41 ~~~~l~~al~~G~iDia~~~ 60 (291)
T 2nxo_A 41 TPEKLSEQLVRGDLDIGPVT 60 (291)
T ss_dssp CHHHHHHHHHTTSCSEEEEE
T ss_pred CHHHHHHHHHcCCCCEeehh
Confidence 46779999999999998754
No 182
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=33.65 E-value=30 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=12.2
Q ss_pred HhhhcCCccEEEeCCc
Q psy2313 42 GDLVTGTAHMSFAALS 57 (62)
Q Consensus 42 g~l~~g~~D~av~~lt 57 (62)
.+|.+|++|+++....
T Consensus 47 ~~l~~g~~D~~i~~~~ 62 (213)
T 3hhf_B 47 INLIERKVDIALRAGE 62 (213)
T ss_dssp HHHHTTSSSEEEECC-
T ss_pred HHHHhCCccEEEEEec
Confidence 3588999999997643
No 183
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=33.57 E-value=47 Score=16.40 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=17.1
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+.+
T Consensus 35 ~~~~a~~~l~~~~~dlii~D~~l 57 (127)
T 3i42_A 35 SGTDALHAMSTRGYDAVFIDLNL 57 (127)
T ss_dssp SHHHHHHHHHHSCCSEEEEESBC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCC
Confidence 45667777788889988877654
No 184
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=33.50 E-value=86 Score=22.00 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.9
Q ss_pred cchhhHHHhhhcCCccEEEe
Q psy2313 35 DKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~ 54 (62)
.++...+..|.+|+||++.-
T Consensus 375 ~s~~~Ci~~I~~g~AD~~~l 394 (686)
T 2d3i_A 375 DETKDCIIKIMKGEADAVAL 394 (686)
T ss_dssp SSHHHHHHHHHHTSCCBEEE
T ss_pred CCHHHHHHHHHcCCCCEEEE
Confidence 47899999999999999875
No 185
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=32.91 E-value=80 Score=19.14 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=15.2
Q ss_pred hhhHHHhhhcCCccEEEeC
Q psy2313 37 WNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 37 w~g~ig~l~~g~~D~av~~ 55 (62)
...++..|..|.+|++..+
T Consensus 45 ~~~~~e~v~~G~id~~~~~ 63 (316)
T 2vpn_A 45 SDDIMEQTQNGILQFVNQS 63 (316)
T ss_dssp --CHHHHHHTTSCSEEEEC
T ss_pred hHHHHHHHhCCCceEEeec
Confidence 4678999999999999765
No 186
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=32.82 E-value=43 Score=19.04 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=29.3
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccc-eeccCCCcchhhHHHhh---hcCCccEEEeCC
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGT-KVRENQKDKWNGVVGDL---VTGTAHMSFAAL 56 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~-~~~~~~~~~w~g~ig~l---~~g~~D~av~~l 56 (62)
++++.||+..|+++.+.-..- .-.. .+-+..+.+...++.++ ...+|++.+-+-
T Consensus 78 elL~~LA~~~Gy~f~v~G~rp-alPv~I~V~~~~~~l~dvLRdig~Q~g~rA~V~v~p~ 135 (148)
T 3ady_A 78 ELTARIAKAAHFRFRVLGKSP-SVPVLISISTKDESLAEILRDIDYQAGKKASIHVYPN 135 (148)
T ss_dssp HHHHHHHHHTTCEEEEESCCC-SSCCEEEEEEEEEEHHHHHHHHHHHHGGGEEEEEETT
T ss_pred HHHHHHHHHcCceEEeccCCC-CCCceEEEccccCcHHHHHHHHHHHhcCceEEEECCC
Confidence 689999999999888741110 0000 00000012355554443 356888887765
No 187
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=31.69 E-value=82 Score=18.59 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=25.9
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCC--ccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGT--AHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~--~D~av~ 54 (62)
++++...++.|+++++... +..+.+...|..|. +|++..
T Consensus 19 ~~~~~Fe~~~gi~V~~~~~--------------~~~~~~~~~l~ag~~~~Dv~~~ 59 (340)
T 3ttn_A 19 TTLKDFTKESGIDVSYDVF--------------DSNETLEGKLVSGHSGYDIVVP 59 (340)
T ss_dssp THHHHHHHHHCCCEEEEEE--------------SSHHHHHHHHHTSCCCCSEECC
T ss_pred HHHHHHHHHHCCEEEEEec--------------CCHHHHHHHHHcCCCCCcEEEE
Confidence 4677888888999998753 23455556665553 687764
No 188
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=31.62 E-value=81 Score=18.54 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC--CccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG--TAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g--~~D~av~~ 55 (62)
+++...++.|++++++... ....-+...+..| .+|++..+
T Consensus 22 ~~~~F~~~~gi~V~~~~~~-------------~~~~~l~~~~~~g~~~~Dv~~~~ 63 (324)
T 4i1d_A 22 ILDPSAKKLGITINQDSIP-------------DAWPAIKTQVGSGKPIWDVVDTP 63 (324)
T ss_dssp THHHHHHHHTCEEEEEECS-------------CCHHHHHHHHHTTCCSCCEEEEE
T ss_pred HHHHHHHHHCCEEEEecCC-------------CcHHHHHHHHHhCCCCeEEEECC
Confidence 5566777779998887521 2455666666655 47887754
No 189
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=31.12 E-value=47 Score=18.42 Aligned_cols=18 Identities=6% Similarity=-0.081 Sum_probs=14.8
Q ss_pred hHHHhhhcCCccEEEeCC
Q psy2313 39 GVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 39 g~ig~l~~g~~D~av~~l 56 (62)
.+...+.+|++|+++.--
T Consensus 65 ~I~d~I~~geIdlVInt~ 82 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFR 82 (134)
T ss_dssp HHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHCCCccEEEEcc
Confidence 488889999999998543
No 190
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=30.91 E-value=33 Score=20.80 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCeEE-EEEecCCcc
Q psy2313 3 LLENIAQELEFDFH-LYIVADGLY 25 (62)
Q Consensus 3 ll~~la~~l~f~~~-~~~~~~~~~ 25 (62)
||..||++++|+++ +...|-|.+
T Consensus 47 LL~tla~kl~~~f~~Y~L~PmGS~ 70 (220)
T 3vp7_A 47 LLATINKNLKINLVDYELQPMGSF 70 (220)
T ss_dssp HHHHHHHHTTCCCSSEEEECCGGG
T ss_pred HHHHHHHHhCCCcccceEEeCCCc
Confidence 78899999998874 445554433
No 191
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=30.70 E-value=66 Score=19.89 Aligned_cols=45 Identities=4% Similarity=-0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhc------CCccEEEeCC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVT------GTAHMSFAAL 56 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~------g~~D~av~~l 56 (62)
+.+.+.++.|=++++...+.++. |.-..++..+.. |.+|+++.+.
T Consensus 31 fa~~v~e~s~G~i~i~v~p~g~L---------g~~~e~~~~v~~~~~~~~G~id~~~~~~ 81 (328)
T 3u65_B 31 LSAEWSEITGGLVSMKFYDMSSL---------GGEREGIRKLKSSRPGQAAPLDGAVFSC 81 (328)
T ss_dssp HHHHHHHHTTTCEEEEEEEHHHH---------TCHHHHHHHTSCSSTTSCCSCSEEEECH
T ss_pred HHHHHHHHcCCeEEEEEecCCCc---------CCHHHHHHHHhhhccCCCCceeEEEecc
Confidence 34567777776666665443332 345688999999 9999998654
No 192
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=30.44 E-value=58 Score=16.50 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCCcc
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~lti 58 (62)
.+..+-+..++.+.+... ......+..+...+.|+++..+.+
T Consensus 20 ~l~~~L~~~~~~~~v~~~--------------~~~~~a~~~l~~~~~dlii~D~~l 61 (144)
T 3kht_A 20 LIRRVLDRKDIHCQLEFV--------------DNGAKALYQVQQAKYDLIILDIGL 61 (144)
T ss_dssp HHHHHHHHTTCCEEEEEE--------------SSHHHHHHHHTTCCCSEEEECTTC
T ss_pred HHHHHHHhcCCCeeEEEE--------------CCHHHHHHHhhcCCCCEEEEeCCC
Confidence 345555666777666543 345667777778888988877654
No 193
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=30.35 E-value=75 Score=18.00 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=14.0
Q ss_pred cchhhHHHhhhcCCccEEEe
Q psy2313 35 DKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~ 54 (62)
+.+..+...+..+..|++++
T Consensus 115 ~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 115 GLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp SCHHHHGGGSCTTCEEEEEE
T ss_pred cCHHHhhcccCCCceEEEEE
Confidence 45665555556688999987
No 194
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=30.29 E-value=84 Score=18.28 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhh----cCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLV----TGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~----~g~~D~av~ 54 (62)
+++...++.|++++++. +.+..+...|. ++.+|+++.
T Consensus 18 ~~~~F~~~~gi~V~~~~---------------~~~~~~~~kl~a~~~~~~~Dv~~~ 58 (322)
T 3e13_X 18 IIKKFEEKTGIKVNHTQ---------------AKASELIKRLSLEGSNSPADIFIT 58 (322)
T ss_dssp HHHHHHHHHCCEEEEEE---------------CCHHHHHHHHHHHGGGCCCCEEEE
T ss_pred HHHHHHHhhCcEEEEEE---------------CCcHHHHHHHHHhccCCCCCEEEe
Confidence 56666666789988874 34555555554 336998865
No 195
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=29.21 E-value=34 Score=17.73 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=11.8
Q ss_pred hHHHHHHHHcCCeE
Q psy2313 2 DLLENIAQELEFDF 15 (62)
Q Consensus 2 dll~~la~~l~f~~ 15 (62)
+..+.||++.||..
T Consensus 24 ~~A~~iA~k~GF~n 37 (90)
T 1kn6_A 24 EAASAIAEELGYDL 37 (90)
T ss_dssp HHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCcEE
Confidence 56889999999965
No 196
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=29.10 E-value=94 Score=18.46 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=25.7
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC--CccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG--TAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g--~~D~av~ 54 (62)
++++...++.|+++++...+ ..+.+...|..| .+|+++.
T Consensus 22 ~~~~~Fe~~~gi~V~~~~~~--------------~~~~~~~kl~ag~~~~Dv~~~ 62 (346)
T 3ttm_A 22 DTLEKFTKETGIKVVYDVYD--------------SNEVLEAKLLAGKSGYDVVVP 62 (346)
T ss_dssp THHHHHHHHHCCEEEEEEES--------------CHHHHHHHHHHSCCSCSEECC
T ss_pred HHHHHHHHHHCCEEEEEecC--------------CHHHHHHHHHcCCCCCcEEEe
Confidence 46778888889999887532 234455555555 3788764
No 197
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=27.90 E-value=1e+02 Score=20.83 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCeEEEE-EecCCcccceec--------cC-CCcchhhHHHhhhcCCccEEEe
Q psy2313 3 LLENIAQELEFDFHLY-IVADGLYGTKVR--------EN-QKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~-~~~~~~~G~~~~--------~~-~~~~w~g~ig~l~~g~~D~av~ 54 (62)
++..|.+++|+++..+ ..+|+.|+-..+ +- .......++.. ..++|++++
T Consensus 267 ~~~~il~~lG~~v~~v~~~~D~~F~~~~p~~~G~i~~~~~~~~al~~l~~~--~~~aDlgia 326 (570)
T 3na5_A 267 YWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLAL--RDKFDLAFA 326 (570)
T ss_dssp HHHHHHHHTTCCEEESCCCCCTTCTTSBCCTTSSCCCCTTCTTTTHHHHTT--GGGCSEEEE
T ss_pred HHHHHHHHcCCeEEEECCEECCCCCCCCCCcccccCCCCCChHHHHHHHHh--ccCCCEEEE
Confidence 5778889999986654 345666654322 00 01113333332 668999885
No 198
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=27.22 E-value=53 Score=18.36 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=27.8
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhh
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLV 45 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~ 45 (62)
++|+.||+..|.+..+...-.|+.-.+.. +..|...+..|.
T Consensus 27 ~vL~~lA~~~g~nivvs~~V~G~vs~rl~---~~~~~q~L~~l~ 67 (156)
T 3gr5_A 27 AILNDFAANYSIPVFISSSVNDDFSGEIK---NEKPVKVLEKLS 67 (156)
T ss_dssp HHHHHHHHHTTCCEEECTTCCCEEEEEEE---EECHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEECCCcceEEEEEec---CCCHHHHHHHHH
Confidence 57899999999988886433444433332 257988887665
No 199
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.89 E-value=73 Score=16.49 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=16.6
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+.+
T Consensus 39 ~~~~al~~l~~~~~dlii~D~~l 61 (154)
T 3gt7_A 39 NGREAVRFLSLTRPDLIISDVLM 61 (154)
T ss_dssp SHHHHHHHHTTCCCSEEEEESCC
T ss_pred CHHHHHHHHHhCCCCEEEEeCCC
Confidence 45667777777888888877654
No 200
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.87 E-value=72 Score=16.41 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=17.4
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+.+
T Consensus 46 ~~~~a~~~l~~~~~dlvi~D~~l 68 (153)
T 3hv2_A 46 DATQALQLLASREVDLVISAAHL 68 (153)
T ss_dssp SHHHHHHHHHHSCCSEEEEESCC
T ss_pred CHHHHHHHHHcCCCCEEEEeCCC
Confidence 45677777788889998877654
No 201
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.83 E-value=17 Score=19.21 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=11.0
Q ss_pred HHHHHHHcCCeEE
Q psy2313 4 LENIAQELEFDFH 16 (62)
Q Consensus 4 l~~la~~l~f~~~ 16 (62)
|+.||++++|.|-
T Consensus 33 Wr~LAe~Lg~~~l 45 (100)
T 2dbf_A 33 WATLAQKLGLGIL 45 (100)
T ss_dssp HHHHHHHHTCGGG
T ss_pred HHHHHHHHCcHHH
Confidence 6789999999874
No 202
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=25.65 E-value=1.1e+02 Score=18.06 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC--CccEEEeC
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG--TAHMSFAA 55 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g--~~D~av~~ 55 (62)
+++...++.|++++++. . +...-+...+..| .+|++..+
T Consensus 20 ~~~~Fe~~~gi~V~~~~-~-------------~~~~kl~a~~~~g~~~~Dv~~~~ 60 (320)
T 4euo_A 20 WAEKFMVETGINVLQDG-P-------------TDYGKLKAMVEANGVTWDVVDVE 60 (320)
T ss_dssp HHHHHHHHHSCCEEEEC-C-------------CCHHHHHHHHHTTCCCCSEEEEE
T ss_pred HHHHHHHHHCCEEEEeC-C-------------CCHHHHHHHHHcCCCCceEEEcC
Confidence 56667777799888874 1 3456677676555 47988754
No 203
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=25.44 E-value=1.1e+02 Score=18.07 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=25.4
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC--CccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG--TAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g--~~D~av~ 54 (62)
++++...++.|+++++...+ ..+.+...|..+ .+|+++.
T Consensus 23 ~~~~~Fe~~~gi~V~~~~~~--------------~~~~~~~kl~a~~~~~Dv~~~ 63 (330)
T 4eqb_A 23 ELLTQFTEETGIQVQYETFD--------------SNEAMYTKIKQGGTTYDIAIP 63 (330)
T ss_dssp HHHHHHHHHHCCEEEEEEES--------------SHHHHHHHHHHCCSCCSEECC
T ss_pred HHHHHHHHHHCCEEEEEeCC--------------CHHHHHHHHhcCCCCCCEEEE
Confidence 46778888889999987542 234455555544 4787763
No 204
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=25.38 E-value=1.6e+02 Score=20.66 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=25.7
Q ss_pred HHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 6 NIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 6 ~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
.++...+-.++.+.. .+-...+..|.+|+||++..
T Consensus 360 ~~~~~~~~~i~Cv~~--------------~s~~~Ci~~I~~g~AD~~~l 394 (689)
T 1blf_A 360 QWSQQSGQNVTCATA--------------STTDDCIVLVLKGEADALNL 394 (689)
T ss_dssp HHHHHTTSSEEEEEE--------------SSHHHHHHHHHHTSCCEEEE
T ss_pred HHHHhcCCCeEEEeC--------------CCHHHHHHHHHcCCCCEEEe
Confidence 344445556666653 36789999999999999873
No 205
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=25.24 E-value=93 Score=19.54 Aligned_cols=42 Identities=5% Similarity=0.087 Sum_probs=26.1
Q ss_pred HHHHHHHcC--CeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeC
Q psy2313 4 LENIAQELE--FDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 4 l~~la~~l~--f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~ 55 (62)
++.+++++| +++.+....+ . ...+...+..+....+|++++.
T Consensus 50 ~~~~~~~~G~~~~~~~~e~~~------~----~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 50 RKELVEALGDKVETTFLENVA------E----GADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp HHHHHHHHTTTEEEEEECSCC------T----THHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhCCceEEEEEecCC------C----HHHHHHHHHHHHHCCCCEEEEC
Confidence 466788888 5444443210 0 1246677888888889988754
No 206
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=24.84 E-value=93 Score=17.01 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=6.2
Q ss_pred hhhcCCccEEEe
Q psy2313 43 DLVTGTAHMSFA 54 (62)
Q Consensus 43 ~l~~g~~D~av~ 54 (62)
++.++++|+++.
T Consensus 60 ~l~~~~~Dlai~ 71 (218)
T 2qsx_A 60 KNIHGESDLHVR 71 (218)
T ss_dssp -----CCSEEEE
T ss_pred cccCCCCCEEEE
Confidence 788999999985
No 207
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=24.59 E-value=75 Score=15.82 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=12.4
Q ss_pred HHHHHHHcCCeEEEEE
Q psy2313 4 LENIAQELEFDFHLYI 19 (62)
Q Consensus 4 l~~la~~l~f~~~~~~ 19 (62)
.+.||+.+|+++.+.+
T Consensus 61 aerlakefnitvtyti 76 (85)
T 2kl8_A 61 AERLAKEFNITVTYTI 76 (85)
T ss_dssp HHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCeEEEEEE
Confidence 3568899999887765
No 208
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=23.39 E-value=76 Score=16.78 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=15.9
Q ss_pred hhHHHhhhcCCccEEEeCCcc
Q psy2313 38 NGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 38 ~g~ig~l~~g~~D~av~~lti 58 (62)
...+..+...+.|+++..+.+
T Consensus 43 ~eAl~~~~~~~~DlvllDi~m 63 (123)
T 2lpm_A 43 QEALDIARKGQFDIAIIDVNL 63 (123)
T ss_dssp HHHHHHHHHCCSSEEEECSSS
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 455667788899999988754
No 209
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.17 E-value=84 Score=15.87 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=15.9
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+..
T Consensus 40 ~~~~a~~~l~~~~~dlii~d~~l 62 (147)
T 2zay_A 40 NAIEAVPVAVKTHPHLIITEANM 62 (147)
T ss_dssp SHHHHHHHHHHHCCSEEEEESCC
T ss_pred CHHHHHHHHHcCCCCEEEEcCCC
Confidence 45666677777788888876643
No 210
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=23.04 E-value=20 Score=14.98 Aligned_cols=9 Identities=22% Similarity=0.933 Sum_probs=7.0
Q ss_pred cchhhHHHh
Q psy2313 35 DKWNGVVGD 43 (62)
Q Consensus 35 ~~w~g~ig~ 43 (62)
+.|.||+..
T Consensus 12 ggW~gmi~g 20 (30)
T 2kxa_A 12 GGWTGMIDG 20 (30)
T ss_dssp HHHHHHHHH
T ss_pred cCccccccc
Confidence 569999864
No 211
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.62 E-value=84 Score=15.70 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=15.4
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
+....+..+...+.|+++..+..
T Consensus 39 ~~~~a~~~l~~~~~dlii~d~~l 61 (142)
T 3cg4_A 39 SGGQCIDLLKKGFSGVVLLDIMM 61 (142)
T ss_dssp SHHHHHHHHHTCCCEEEEEESCC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCC
Confidence 45566667777778887766543
No 212
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=22.58 E-value=27 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHcCCeEEEE
Q psy2313 4 LENIAQELEFDFHLY 18 (62)
Q Consensus 4 l~~la~~l~f~~~~~ 18 (62)
++.||+++||++++.
T Consensus 34 Wr~LA~~Lg~~~~i~ 48 (103)
T 1wmg_A 34 WRLLAQKLSMDRYLN 48 (103)
T ss_dssp HHHHHHHTTCGGGHH
T ss_pred HHHHHHHcCChHHHH
Confidence 788999999998443
No 213
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=22.56 E-value=1.1e+02 Score=17.20 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=14.7
Q ss_pred hHHHhhhcCCccEEEeCC
Q psy2313 39 GVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 39 g~ig~l~~g~~D~av~~l 56 (62)
.+...+.+|++|+++.--
T Consensus 73 ~I~d~I~~geIdlVInt~ 90 (152)
T 1b93_A 73 QVGALISEGKIDVLIFFW 90 (152)
T ss_dssp HHHHHHHTTCCCEEEEEC
T ss_pred hHHHHHHCCCccEEEEcC
Confidence 478889999999998543
No 214
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=22.43 E-value=80 Score=16.99 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=27.9
Q ss_pred hHHHHHHHHcCCeEEEEEe-cCCcccceeccCCCcchhhHHHhhhc
Q psy2313 2 DLLENIAQELEFDFHLYIV-ADGLYGTKVRENQKDKWNGVVGDLVT 46 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~-~~~~~G~~~~~~~~~~w~g~ig~l~~ 46 (62)
++++.+|+..|.+..+... -+++.-.... ...|..++..|..
T Consensus 11 ~vl~~la~~~~~~ivvs~~~v~g~vsg~l~---~~~~~~~l~~l~~ 53 (137)
T 2y9k_A 11 TFFDAMALQLKEPVIVSKMAARKKITGNFE---FHDPNALLEKLSL 53 (137)
T ss_dssp HHHHHHHHHTTCCEEECHHHHCSEEEEEEC---SCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEECchhccceEEEEEc---CCCHHHHHHHHHH
Confidence 5788999999998887632 2454433333 2578888876653
No 215
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.37 E-value=37 Score=18.28 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=17.6
Q ss_pred hHHHHHHHHcCCeEEEEEecCCccc
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYG 26 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G 26 (62)
|-+++|.++.|.+..++.+.|..|.
T Consensus 40 dsieelvkkynativvvvvddkewa 64 (134)
T 2l69_A 40 DSIEELVKKYNATIVVVVVDDKEWA 64 (134)
T ss_dssp HHHHHHTTCCCCEEEEEECSSHHHH
T ss_pred HHHHHHHHHhCCeEEEEEEccHHHH
Confidence 4466777888888888877665444
No 216
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=22.23 E-value=90 Score=15.88 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=16.8
Q ss_pred chhhHHHhhhcCCccEEEeCC
Q psy2313 36 KWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~l 56 (62)
..+.++......++|+++.+-
T Consensus 98 ~~~~I~~~a~~~~~dliV~G~ 118 (147)
T 3hgm_A 98 PSRTIVRFARKRECDLVVIGA 118 (147)
T ss_dssp HHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 467888888888999988764
No 217
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.03 E-value=88 Score=15.68 Aligned_cols=23 Identities=0% Similarity=0.020 Sum_probs=17.7
Q ss_pred chhhHHHhhhc-CCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVT-GTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~-g~~D~av~~lti 58 (62)
.....+..+.. .+.|+++..+.+
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~D~~l 60 (140)
T 3lua_A 37 NLKKFYSIFKDLDSITLIIMDIAF 60 (140)
T ss_dssp SHHHHHTTTTTCCCCSEEEECSCS
T ss_pred CHHHHHHHHhcCCCCcEEEEeCCC
Confidence 46677777788 889999887754
No 218
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.94 E-value=84 Score=15.40 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=16.3
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.-...+..+...+.|+++..+.+
T Consensus 34 ~~~~al~~~~~~~~dlii~D~~~ 56 (120)
T 3f6p_A 34 DGNEAVEMVEELQPDLILLDIML 56 (120)
T ss_dssp SHHHHHHHHHTTCCSEEEEETTS
T ss_pred CHHHHHHHHhhCCCCEEEEeCCC
Confidence 34556677777888988877654
No 219
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=21.79 E-value=2.1e+02 Score=20.06 Aligned_cols=33 Identities=6% Similarity=-0.163 Sum_probs=25.1
Q ss_pred HHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEe
Q psy2313 8 AQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFA 54 (62)
Q Consensus 8 a~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~ 54 (62)
...++..++.+.. .+-...|..|.+|+||++.-
T Consensus 27 ~~~~~~~i~Cv~~--------------~s~~~Ci~~I~~g~AD~~~l 59 (691)
T 1cb6_A 27 RKVRGPPVSCIKR--------------DSPIQCIQAIAENRADAVTL 59 (691)
T ss_dssp HHTTCCCEEEEEC--------------SSHHHHHHHHHTTSCCBEEE
T ss_pred hhccCCceEEEeC--------------CCHHHHHHHHhcCCCCEEEE
Confidence 3445677777763 35689999999999998763
No 220
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.70 E-value=89 Score=15.65 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=13.3
Q ss_pred hhhHHHhhhcCCccEEEeCCcc
Q psy2313 37 WNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 37 w~g~ig~l~~g~~D~av~~lti 58 (62)
-...+..+...+.|+++..+.+
T Consensus 39 ~~~a~~~l~~~~~dlvi~D~~l 60 (136)
T 3kto_A 39 AESFMRQQISDDAIGMIIEAHL 60 (136)
T ss_dssp HHHHTTSCCCTTEEEEEEETTG
T ss_pred HHHHHHHHhccCCCEEEEeCcC
Confidence 3445555566677777766543
No 221
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.64 E-value=1.1e+02 Score=16.82 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=14.5
Q ss_pred hHHHHHHHHcCCeEEEEE
Q psy2313 2 DLLENIAQELEFDFHLYI 19 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~ 19 (62)
+-|+.+-+.|||++++..
T Consensus 44 ~~L~~~f~~LgF~V~~~~ 61 (146)
T 2dko_A 44 ANLRETFRNLKYEVRNKN 61 (146)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEee
Confidence 457778889999988875
No 222
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=21.62 E-value=1e+02 Score=16.38 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=23.0
Q ss_pred HHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCccEEEeCC
Q psy2313 9 QELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 9 ~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~D~av~~l 56 (62)
+..+++++..... | .....++......++|++|.+-
T Consensus 97 ~~~g~~~~~~v~~----G--------~~~~~I~~~a~~~~~DLIVmG~ 132 (175)
T 2gm3_A 97 HEIGVGCEAWIKT----G--------DPKDVICQEVKRVRPDFLVVGS 132 (175)
T ss_dssp HHHTCEEEEEEEE----S--------CHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHCCCceEEEEec----C--------CHHHHHHHHHHHhCCCEEEEeC
Confidence 3457777765432 1 2356777777777899888653
No 223
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.37 E-value=89 Score=15.51 Aligned_cols=23 Identities=4% Similarity=-0.036 Sum_probs=16.8
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+.+
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d~~~ 57 (140)
T 2qr3_A 35 SPVSLSTVLREENPEVVLLDMNF 57 (140)
T ss_dssp CHHHHHHHHHHSCEEEEEEETTT
T ss_pred CHHHHHHHHHcCCCCEEEEeCCc
Confidence 45667777778888888877654
No 224
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.37 E-value=23 Score=17.13 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=13.8
Q ss_pred hHHHHHHHHcCCeEEEEE
Q psy2313 2 DLLENIAQELEFDFHLYI 19 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~ 19 (62)
+.+..|++.+|++.++..
T Consensus 62 ~~l~~la~~l~~~~~~l~ 79 (83)
T 2a6c_A 62 ESLIDMITSIGLKVEINI 79 (83)
T ss_dssp HHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 467788899998877654
No 225
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=21.22 E-value=54 Score=17.75 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=13.5
Q ss_pred hHHHHHHHHcCCeEEEE
Q psy2313 2 DLLENIAQELEFDFHLY 18 (62)
Q Consensus 2 dll~~la~~l~f~~~~~ 18 (62)
+-++++|+.+||+++-.
T Consensus 47 ~klEe~a~~lg~~v~kk 63 (123)
T 2zfd_B 47 ERLEEIVSAENLTVAKK 63 (123)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEc
Confidence 45788999999988753
No 226
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=21.22 E-value=1.2e+02 Score=17.09 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.2
Q ss_pred hHHHHHHHHcCCeEEEEE
Q psy2313 2 DLLENIAQELEFDFHLYI 19 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~ 19 (62)
+-|+.+-+.|||++++..
T Consensus 61 ~~L~~~f~~LgF~V~~~~ 78 (167)
T 1pyo_A 61 STLVTLFKLLGYDVHVLC 78 (167)
T ss_dssp HHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEee
Confidence 356778889999998875
No 227
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=21.20 E-value=1.5e+02 Score=18.15 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcCCc-cEEEe
Q psy2313 3 LLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTA-HMSFA 54 (62)
Q Consensus 3 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g~~-D~av~ 54 (62)
++++..++-|++++++..+. ..-++-+.-++..|+. |++..
T Consensus 59 ~~~~Fe~~~gi~V~~~~~~~-----------~~~~~kl~~~~~sg~~PDv~~~ 100 (420)
T 4hs7_A 59 ITDQYTKKTGIKVKLVNIGQ-----------NDQLENISLDAPAGKGPDIFFL 100 (420)
T ss_dssp HHHHHHHHHCCEEEEEECCT-----------TTHHHHHHHHTTTTCCCSEEEE
T ss_pred HHHHHHhccCCEEEEEECCc-----------HHHHHHHHHHHhcCCCCcEEEe
Confidence 44555566799999886431 0123445556667764 87654
No 228
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.05 E-value=85 Score=15.13 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=15.8
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+..
T Consensus 37 ~~~~a~~~~~~~~~dlvi~d~~~ 59 (127)
T 2gkg_A 37 DGKGSVEQIRRDRPDLVVLAVDL 59 (127)
T ss_dssp CHHHHHHHHHHHCCSEEEEESBC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCC
Confidence 45566667777778888876644
No 229
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=20.97 E-value=1.3e+02 Score=17.69 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=24.0
Q ss_pred hHHHHHHHHcCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC---CccEEEe
Q psy2313 2 DLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG---TAHMSFA 54 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g---~~D~av~ 54 (62)
++++...++.|+++++... +.|+.+...|..+ ..|++..
T Consensus 18 ~~~~~F~~~~gi~V~~~~~--------------~~~~~~~~kl~a~~~~~pDv~~~ 59 (325)
T 1pot_A 18 GLLEQFTKETGIKVIYSTY--------------ESNETMYAKLKTYKDGAYDLVVP 59 (325)
T ss_dssp THHHHHHHHHCEEEEEEEE--------------SCHHHHHHHHTTCSSSCSSBBCC
T ss_pred HHHHHHHHHHCCEEEEEec--------------CCHHHHHHHHhcCCCCCCcEEEE
Confidence 4667777777888887753 2355555555543 4576543
No 230
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=20.89 E-value=97 Score=15.77 Aligned_cols=21 Identities=0% Similarity=-0.152 Sum_probs=15.6
Q ss_pred chhhHHH-hhhcCCccEEEeCC
Q psy2313 36 KWNGVVG-DLVTGTAHMSFAAL 56 (62)
Q Consensus 36 ~w~g~ig-~l~~g~~D~av~~l 56 (62)
..+.++. ......+|+++.+-
T Consensus 95 ~~~~I~~~~a~~~~~dliV~G~ 116 (146)
T 3s3t_A 95 PKHTIEDYAKQHPEIDLIVLGA 116 (146)
T ss_dssp HHHHHHHHHHHSTTCCEEEEES
T ss_pred hHHHHHHHHHhhcCCCEEEECC
Confidence 4567777 66678999988764
No 231
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=20.62 E-value=1.4e+02 Score=17.30 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.7
Q ss_pred hHHHHHHHHcCCeEEEEE
Q psy2313 2 DLLENIAQELEFDFHLYI 19 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~ 19 (62)
+-|+.+-+.|||++++..
T Consensus 72 ~~L~~~F~~LGF~V~~~~ 89 (179)
T 3p45_A 72 DNLTRRFSDLGFEVKCFN 89 (179)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 457788899999998875
No 232
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.60 E-value=1e+02 Score=15.79 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=16.9
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
+....+..+...+.|+++..+.+
T Consensus 39 ~~~~a~~~l~~~~~dlvi~d~~l 61 (154)
T 2rjn_A 39 SPLDALEALKGTSVQLVISDMRM 61 (154)
T ss_dssp CHHHHHHHHTTSCCSEEEEESSC
T ss_pred CHHHHHHHHhcCCCCEEEEecCC
Confidence 45667777777888988877654
No 233
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=20.60 E-value=57 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=16.5
Q ss_pred hHHHHHHHHcCCeEEEEEec
Q psy2313 2 DLLENIAQELEFDFHLYIVA 21 (62)
Q Consensus 2 dll~~la~~l~f~~~~~~~~ 21 (62)
++.+.|.+.|++.|+++...
T Consensus 215 ~~ae~il~~LgLpyrv~~~~ 234 (346)
T 3mf2_A 215 VRAQAIARDLGLTFRVDYAS 234 (346)
T ss_dssp HHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHCCCCEEEEEcc
Confidence 56788889999999998753
No 234
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.56 E-value=1.2e+02 Score=16.48 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=13.7
Q ss_pred cchhhHHHhhhcCCccEEEeCC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAAL 56 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~l 56 (62)
+.+......+..+++|++++..
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECC
T ss_pred ccHHHHHhhccCCCccEEEECC
Confidence 4455554444467889888764
No 235
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=20.26 E-value=1.4e+02 Score=17.32 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=19.8
Q ss_pred cCCeEEEEEecCCcccceeccCCCcchhhHHHhhhcC-CccEEEeC
Q psy2313 11 LEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTG-TAHMSFAA 55 (62)
Q Consensus 11 l~f~~~~~~~~~~~~G~~~~~~~~~~w~g~ig~l~~g-~~D~av~~ 55 (62)
-|+++++.... +....++..+..| .+|+++.+
T Consensus 32 ~gi~V~v~~~~-------------~~s~~l~~~~~~g~~~Dv~~~~ 64 (310)
T 1sbp_A 32 TGDNVVIDQSH-------------GGSGKQATSVINGIEADTVTLA 64 (310)
T ss_dssp HSCEEEEEEEE-------------SCHHHHHHHHHTTCCCSEEEES
T ss_pred CCceEEEEeec-------------CChHHHHHHHhcCCCCCEEEeC
Confidence 58878776421 2334556666665 78998754
No 236
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=20.12 E-value=1.4e+02 Score=17.14 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=15.7
Q ss_pred cchhhHHHhhhcCCccEEEeC
Q psy2313 35 DKWNGVVGDLVTGTAHMSFAA 55 (62)
Q Consensus 35 ~~w~g~ig~l~~g~~D~av~~ 55 (62)
+.|..+...+..+..|.+...
T Consensus 115 ~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 115 GLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp SCHHHHGGGSCTTCEEEEEEC
T ss_pred ehHHhhcccccccCCceEEEe
Confidence 568777777788888887643
No 237
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=20.11 E-value=96 Score=15.38 Aligned_cols=23 Identities=4% Similarity=-0.028 Sum_probs=16.8
Q ss_pred chhhHHHhhhcCCccEEEeCCcc
Q psy2313 36 KWNGVVGDLVTGTAHMSFAALSV 58 (62)
Q Consensus 36 ~w~g~ig~l~~g~~D~av~~lti 58 (62)
.....+..+...+.|+++..+..
T Consensus 42 ~~~~a~~~~~~~~~dlii~d~~~ 64 (140)
T 3cg0_A 42 NGEEAVRCAPDLRPDIALVDIML 64 (140)
T ss_dssp SHHHHHHHHHHHCCSEEEEESSC
T ss_pred CHHHHHHHHHhCCCCEEEEecCC
Confidence 45667777777788988877654
Done!