RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2313
         (62 letters)



>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 38.9 bits (89), Expect = 6e-06
 Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 1   MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSS 60
           +D+L+ +++ ++F + LY+V +G +G        + WNG++G++V   A M+  +L+++ 
Sbjct: 58  IDILKKLSRTVKFTYDLYLVTNGKHGK----KVNNVWNGMIGEVVYQRAVMAVGSLTINE 113

Query: 61  TR 62
            R
Sbjct: 114 ER 115


>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 289

 Score = 38.9 bits (89), Expect = 7e-06
 Identities = 25/64 (39%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 1   MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDK--WNGVVGDLVTGTAHMSFAALSV 58
           +DLL  +A+ + F + +++VADG +GT+ R N  +K  WNG++G+L++G A M  A L++
Sbjct: 65  IDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTI 124

Query: 59  SSTR 62
           ++ R
Sbjct: 125 NNER 128


>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
          (Rattus norvegicus), GluR2 [TaxId: 10116]}
          Length = 260

 Score = 38.1 bits (87), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 1  MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKWNGVVGDLVTGTAHMSFAALSVSS 60
          +DL   IA+   F + L IV DG YG +  +     WNG+VG+LV G A ++ A L+++ 
Sbjct: 35 VDLAAEIAKHCGFKYKLTIVGDGKYGAR--DADTKIWNGMVGELVYGKADIAIAPLTITL 92

Query: 61 TR 62
           R
Sbjct: 93 VR 94


>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
          binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
          10116]}
          Length = 246

 Score = 30.2 bits (66), Expect = 0.009
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 1  MDLLENIAQELEFDFHLYIVADGLYGTKVRENQKDKW 37
          +DLL+ ++  L F + + +V DG YG +  + + +  
Sbjct: 33 LDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGM 69


>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 153

 Score = 23.9 bits (51), Expect = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 37 WNGVVGDLVTGTAHMSFAA 55
            G+V D+ TG+A    AA
Sbjct: 80 NLGLVEDVATGSAAGPVAA 98


>d1qexa_ b.32.1.1 (A:) gp9 {Bacteriophage T4 [TaxId: 10665]}
          Length = 288

 Score = 22.9 bits (49), Expect = 3.6
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 35  DKWNGVVGDLVTGTAHMSFAALSVSSTR 62
           D   GV G+LV  + +       +SS  
Sbjct: 128 DSIKGVSGNLVVTSPYSKVTLRCISSDN 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0377    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 218,218
Number of extensions: 6922
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 6
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)