BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy232
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 5/166 (3%)
Query: 69 DIYFDGANGVGGVKIKEL-QKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTG 127
DI D ANGVG KI+EL +K + ++ V N D LNF CGAD+ KT + +P
Sbjct: 218 DITIDAANGVGAPKIQELLEKYLHKEISFTVVNGDYKQPNLLNFDCGADYVKTNQKLPK- 276
Query: 128 VNIKNLNNK-YLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCN-LKD 185
N+K +NNK Y S DGDADR+I +Y N DN LLDGD+++ LFA+++ +L + + K
Sbjct: 277 -NVKPVNNKLYASFDGDADRLICYYQNNDNKFKLLDGDKLSTLFALFLQQLFKQIDPTKI 335
Query: 186 KVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYD 231
+NI V+QTAY NG+ T Y+++ L I V T TGVKHLHHEA +D
Sbjct: 336 SLNIGVVQTAYANGSSTKYVEDVLKIPVRCTPTGVKHLHHEAENFD 381
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 230 YDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTE 289
+ T NA+ +VEP GMQD I+K VA++ N RSFVR SGTED VR+Y EA+T +V L++
Sbjct: 478 FKTTNAERTLVEPKGMQDEIDKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELSK 537
Query: 290 EIQQVVK 296
+ ++VK
Sbjct: 538 AVSELVK 544
>pdb|1WJW|A Chain A, Solution Structure Of The C-Terminal Domain Of Mouse
Phosphoacetylglucosamine Mutase (Pagm)
Length = 112
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 232 TINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEI 291
T +A+ + V P G+Q++IN V K+ AR+FVRPSGTEDIVR+Y EA + E + L E+
Sbjct: 30 TTDAERQAVTPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEV 89
Query: 292 QQVV 295
+V
Sbjct: 90 SLLV 93
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 247 DSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
D+++ + A R SGTE +VRIYVEA++ E V AL EE +++V+
Sbjct: 414 DTLDGVKWLYEEAWVLFRASGTEPVVRIYVEAQSPELVRALLEEARKLVE 463
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 257 NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297
+ R VRPSGTE ++R+ EA T E +A I +VVK
Sbjct: 424 GDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKA 464
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
L+ DGD DR+I D +++DGD+I + A Y+ E
Sbjct: 258 LAFDGDGDRLIAV----DEKGNIVDGDQIMFICAKYMKE 292
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 257 NNARSFVRPSGTEDIVRIYVEAE----TSEDVNALTEEIQQ 293
N R +RPSGTE ++R+ VEA+ + + L E+++Q
Sbjct: 400 NRGRVLLRPSGTEPVLRVXVEADDKSLATNEAEYLVEKVKQ 440
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 132 NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKV 191
N+ + ++ A R ++W+PN D ++LDG+ +FA ++R D +
Sbjct: 233 NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGD---VGY 289
Query: 192 IQTAYTNGNCTNYIKNTLNIDVIF 215
+ Y + N + L+I V+F
Sbjct: 290 VPKGYGHA-IRNSSQKPLDIVVVF 312
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 224 HHEALKYDTINADTEIVEPLGMQ-DSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSE 282
H E ++ +N E+ G D+ + + F + VR SGTE I+RI+ EA++ E
Sbjct: 378 HVEGDRHAIVNKVAEMARERGYTVDTTDGAKIIFEDGWVLVRASGTEPIIRIFSEAKSKE 437
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 262 FVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
VR SGTE I+RI EA+ N L E++++V+
Sbjct: 419 LVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVE 453
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 241 EPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEA 278
EPLG K VA NA VRPSGTED+ ++Y E+
Sbjct: 470 EPLGGI----KVVAA--NAWFAVRPSGTEDVAKVYAES 501
>pdb|3ULB|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Saccharomyces Cerevisiae Avo1, A Torc2 Subunit, In The
P212121 Crystal Form
pdb|3ULB|B Chain B, Crystal Structure Of The Pleckstrin Homology Domain Of
Saccharomyces Cerevisiae Avo1, A Torc2 Subunit, In The
P212121 Crystal Form
pdb|3ULC|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Saccharomyces Cerevisiae Avo1, A Torc2 Subunit, In The
P3121 Crystal Form
Length = 121
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 262 FVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298
FVR G +DI R Y EA + ++ + +Q ++ Y
Sbjct: 80 FVRREGQDDIKRYYFEAVSGQECTEIVTRLQNLLSAY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,316,761
Number of Sequences: 62578
Number of extensions: 404242
Number of successful extensions: 1048
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 21
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)