Query psy232
Match_columns 299
No_of_seqs 165 out of 1447
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:36:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03086 PGM3 PGM3 (phosphogluc 100.0 7.1E-56 1.5E-60 428.8 27.9 248 42-295 163-513 (513)
2 PRK14316 glmM phosphoglucosami 100.0 3.5E-55 7.7E-60 421.1 27.3 264 9-299 95-445 (448)
3 PTZ00302 N-acetylglucosamine-p 100.0 7.8E-55 1.7E-59 423.7 28.2 251 41-299 214-582 (585)
4 cd05802 GlmM GlmM is a bacteri 100.0 1.8E-54 3.8E-59 414.7 25.4 257 9-291 92-433 (434)
5 PRK14315 glmM phosphoglucosami 100.0 7.5E-54 1.6E-58 411.7 27.3 265 9-298 97-446 (448)
6 PRK14321 glmM phosphoglucosami 100.0 1.3E-54 2.9E-59 416.9 21.9 255 9-298 91-445 (449)
7 cd03089 PMM_PGM The phosphoman 100.0 1.1E-54 2.5E-59 417.1 20.1 254 9-295 91-443 (443)
8 cd05805 MPG1_transferase GTP-m 100.0 1.2E-54 2.7E-59 416.6 20.3 255 9-295 89-441 (441)
9 PRK14317 glmM phosphoglucosami 100.0 1.1E-53 2.3E-58 412.3 26.2 266 9-299 110-464 (465)
10 PRK14314 glmM phosphoglucosami 100.0 1.2E-53 2.7E-58 410.4 26.5 266 9-299 97-449 (450)
11 PRK14324 glmM phosphoglucosami 100.0 1.6E-53 3.5E-58 408.9 26.5 265 9-299 94-444 (446)
12 COG1109 {ManB} Phosphomannomut 100.0 4.1E-54 9E-59 414.7 21.1 263 9-299 99-461 (464)
13 PLN02895 phosphoacetylglucosam 100.0 7.1E-53 1.5E-57 407.3 28.4 251 41-299 184-555 (562)
14 PRK14320 glmM phosphoglucosami 100.0 3.3E-53 7.2E-58 406.7 25.5 262 9-298 96-441 (443)
15 PRK14323 glmM phosphoglucosami 100.0 9.2E-53 2E-57 403.4 26.9 252 9-297 97-437 (440)
16 PRK09542 manB phosphomannomuta 100.0 2.6E-53 5.7E-58 407.5 22.1 258 9-297 89-444 (445)
17 cd05803 PGM_like4 This PGM-lik 100.0 2.1E-53 4.6E-58 408.3 21.4 255 9-291 92-444 (445)
18 PRK14318 glmM phosphoglucosami 100.0 1.4E-52 3.1E-57 402.8 26.8 264 9-299 99-447 (448)
19 PRK14319 glmM phosphoglucosami 100.0 1.3E-52 2.8E-57 401.2 25.6 257 9-298 88-425 (430)
20 PRK15414 phosphomannomutase Cp 100.0 5.2E-53 1.1E-57 406.4 21.5 259 9-296 93-455 (456)
21 PRK10887 glmM phosphoglucosami 100.0 4.6E-52 1E-56 398.8 26.2 264 9-298 94-442 (443)
22 TIGR01455 glmM phosphoglucosam 100.0 1E-51 2.2E-56 396.5 27.5 263 9-296 93-442 (443)
23 cd03087 PGM_like1 This archaea 100.0 2.4E-52 5.3E-57 400.6 20.7 254 9-295 87-439 (439)
24 PLN02371 phosphoglucosamine mu 100.0 4.3E-52 9.3E-57 409.5 22.8 265 9-298 172-569 (583)
25 cd03084 phosphohexomutase The 100.0 6.2E-52 1.3E-56 387.7 22.6 259 9-295 33-355 (355)
26 cd05800 PGM_like2 This PGM-lik 100.0 1.7E-52 3.8E-57 403.9 19.3 257 10-295 96-461 (461)
27 TIGR01132 pgm phosphoglucomuta 100.0 3E-51 6.6E-56 401.3 24.1 271 8-297 139-540 (543)
28 cd05801 PGM_like3 This bacteri 100.0 3.7E-51 8E-56 399.2 24.2 269 8-294 122-521 (522)
29 PRK14322 glmM phosphoglucosami 100.0 4.1E-50 8.9E-55 383.9 25.5 259 9-296 91-428 (429)
30 PRK07564 phosphoglucomutase; V 100.0 1.4E-49 3.1E-54 389.5 23.6 268 9-297 139-539 (543)
31 PTZ00150 phosphoglucomutase-2- 100.0 1.3E-46 2.9E-51 371.2 22.3 199 9-229 145-388 (584)
32 cd03085 PGM1 Phosphoglucomutas 100.0 7.6E-47 1.7E-51 369.4 19.7 199 9-231 107-359 (548)
33 cd03088 ManB ManB is a bacteri 100.0 7.8E-47 1.7E-51 364.0 18.6 242 9-290 90-457 (459)
34 cd05799 PGM2 This CD includes 100.0 6.5E-46 1.4E-50 360.4 24.4 255 9-281 101-472 (487)
35 PLN02307 phosphoglucomutase 100.0 1.2E-45 2.7E-50 361.7 20.3 265 9-297 122-559 (579)
36 KOG2537|consensus 100.0 8.7E-44 1.9E-48 329.3 24.6 255 41-299 186-539 (539)
37 KOG1220|consensus 100.0 1.5E-37 3.2E-42 292.5 18.4 201 6-229 155-405 (607)
38 COG0033 Pgm Phosphoglucomutase 100.0 5.7E-33 1.2E-37 253.9 11.3 266 9-297 117-518 (524)
39 KOG0625|consensus 100.0 1.3E-27 2.9E-32 216.8 14.9 201 10-230 114-365 (558)
40 PF02879 PGM_PMM_II: Phosphogl 99.8 8.5E-20 1.8E-24 141.3 9.6 98 42-156 1-104 (104)
41 PF00408 PGM_PMM_IV: Phosphogl 99.6 2.7E-15 5.9E-20 108.5 4.9 50 247-296 23-73 (73)
42 PF02880 PGM_PMM_III: Phosphog 98.8 2.4E-08 5.3E-13 78.2 7.1 63 162-232 1-63 (113)
43 PF02878 PGM_PMM_I: Phosphoglu 98.7 5.3E-09 1.1E-13 84.8 0.9 39 9-47 95-133 (137)
44 PRK00745 4-oxalocrotonate taut 75.3 5.5 0.00012 26.9 4.0 30 270-299 2-32 (62)
45 PRK01964 4-oxalocrotonate taut 75.1 6.1 0.00013 27.0 4.2 29 270-298 2-31 (64)
46 PF09981 DUF2218: Uncharacteri 74.5 8.2 0.00018 28.6 5.0 45 252-298 34-78 (89)
47 cd00491 4Oxalocrotonate_Tautom 74.1 6 0.00013 26.2 3.9 29 270-298 1-30 (58)
48 PRK02289 4-oxalocrotonate taut 72.5 7.7 0.00017 26.2 4.1 29 270-298 2-31 (60)
49 PRK02220 4-oxalocrotonate taut 68.5 9.6 0.00021 25.6 3.9 29 270-298 2-31 (61)
50 PF14492 EFG_II: Elongation Fa 55.0 31 0.00066 24.5 4.6 30 268-297 2-31 (75)
51 COG1254 AcyP Acylphosphatases 53.4 28 0.0006 26.0 4.3 31 258-292 33-63 (92)
52 PF14028 SpaB_C: SpaB C-termin 53.1 30 0.00066 30.8 5.4 35 248-282 26-61 (283)
53 PF12909 DUF3832: Protein of u 52.5 41 0.0009 25.0 5.0 37 257-297 15-52 (89)
54 PF09413 DUF2007: Domain of un 49.6 16 0.00034 25.1 2.4 27 266-292 40-66 (67)
55 TIGR00013 taut 4-oxalocrotonat 44.6 50 0.0011 22.0 4.3 30 270-299 1-32 (63)
56 cd06395 PB1_Map2k5 PB1 domain 42.1 44 0.00096 24.3 3.6 28 140-178 47-74 (91)
57 COG3414 SgaB Phosphotransferas 41.9 1.5E+02 0.0032 22.2 6.8 26 68-93 2-32 (93)
58 PRK14434 acylphosphatase; Prov 41.1 67 0.0015 23.9 4.7 33 258-293 32-64 (92)
59 PF07288 DUF1447: Protein of u 35.6 43 0.00093 23.6 2.7 20 271-290 19-38 (69)
60 PF03141 Methyltransf_29: Puta 34.9 82 0.0018 31.0 5.4 64 13-87 73-136 (506)
61 PF06029 AlkA_N: AlkA N-termin 34.3 55 0.0012 25.5 3.5 38 258-295 45-82 (116)
62 PRK00549 competence damage-ind 34.2 1.5E+02 0.0033 28.4 7.2 88 210-297 142-245 (414)
63 PRK10632 transcriptional regul 33.9 1.5E+02 0.0032 26.7 6.9 73 20-92 43-116 (309)
64 PRK12613 galactose-6-phosphate 32.9 52 0.0011 26.7 3.2 30 69-100 2-33 (141)
65 PRK14430 acylphosphatase; Prov 31.7 1.2E+02 0.0027 22.4 4.9 31 258-292 33-63 (92)
66 COG1058 CinA Predicted nucleot 31.4 1.8E+02 0.004 26.0 6.7 87 211-297 144-248 (255)
67 PRK14448 acylphosphatase; Prov 31.1 1.1E+02 0.0023 22.6 4.4 31 258-292 31-61 (90)
68 PRK13667 hypothetical protein; 31.0 55 0.0012 23.1 2.6 18 273-290 22-39 (70)
69 PRK14644 hypothetical protein; 30.9 1.1E+02 0.0024 24.5 4.8 36 261-296 18-53 (136)
70 TIGR01118 lacA galactose-6-pho 30.5 65 0.0014 26.1 3.4 30 69-100 2-33 (141)
71 PF03439 Spt5-NGN: Early trans 29.7 48 0.001 24.1 2.3 29 260-291 36-64 (84)
72 TIGR02133 RPI_actino ribose 5- 29.6 71 0.0015 26.1 3.5 71 69-149 2-74 (148)
73 PF00017 SH2: SH2 domain; Int 29.3 31 0.00067 24.1 1.2 15 256-270 19-33 (77)
74 TIGR01006 polys_exp_MPA1 polys 29.2 1.3E+02 0.0027 26.0 5.4 37 259-295 108-144 (226)
75 PRK13396 3-deoxy-7-phosphohept 29.1 86 0.0019 29.5 4.4 38 66-105 270-313 (352)
76 PRK13398 3-deoxy-7-phosphohept 28.7 81 0.0017 28.4 4.1 38 66-105 195-238 (266)
77 PRK01271 4-oxalocrotonate taut 28.7 1.2E+02 0.0025 21.8 4.1 29 270-298 2-32 (76)
78 TIGR01010 BexC_CtrB_KpsE polys 27.4 1.4E+02 0.0031 27.8 5.7 38 259-296 120-157 (362)
79 PRK08673 3-deoxy-7-phosphohept 27.1 1.1E+02 0.0024 28.6 4.7 38 66-105 261-304 (335)
80 PF03646 FlaG: FlaG protein; 26.7 1.5E+02 0.0032 22.4 4.7 42 132-173 53-96 (107)
81 PRK11074 putative DNA-binding 26.6 1.1E+02 0.0024 27.3 4.7 73 20-92 43-116 (300)
82 PRK03525 crotonobetainyl-CoA:c 26.5 75 0.0016 30.4 3.7 34 65-101 12-45 (405)
83 cd01523 RHOD_Lact_B Member of 26.3 1.5E+02 0.0033 21.5 4.7 31 67-99 61-91 (100)
84 PF00352 TBP: Transcription fa 25.7 1.9E+02 0.004 20.9 4.9 40 259-298 39-85 (86)
85 PRK13442 atpC F0F1 ATP synthas 25.6 46 0.001 24.5 1.6 26 137-164 15-40 (89)
86 PRK08621 galactose-6-phosphate 25.6 89 0.0019 25.4 3.4 30 69-100 2-33 (142)
87 cd01518 RHOD_YceA Member of th 25.3 1.4E+02 0.003 21.8 4.3 34 66-100 60-93 (101)
88 PRK05783 hypothetical protein; 25.3 1.1E+02 0.0024 22.4 3.6 33 263-295 35-67 (84)
89 smart00135 LY Low-density lipo 25.0 64 0.0014 19.1 2.0 18 136-155 12-29 (43)
90 PRK08622 galactose-6-phosphate 25.0 93 0.002 26.1 3.5 103 69-216 2-106 (171)
91 PF07676 PD40: WD40-like Beta 24.9 87 0.0019 18.5 2.6 18 132-149 8-25 (39)
92 cd01524 RHOD_Pyr_redox Member 24.7 1.5E+02 0.0033 21.0 4.4 32 67-100 51-82 (90)
93 PF14207 DpnD-PcfM: DpnD/PcfM- 24.5 1E+02 0.0022 20.0 2.9 17 274-290 14-30 (48)
94 PF02700 PurS: Phosphoribosylf 24.5 1.4E+02 0.0029 21.6 3.9 28 268-295 38-65 (80)
95 PF00708 Acylphosphatase: Acyl 24.4 1.9E+02 0.0041 21.0 4.8 32 258-293 33-64 (91)
96 PRK12615 galactose-6-phosphate 24.1 1E+02 0.0022 25.8 3.6 30 69-100 2-33 (171)
97 COG0124 HisS Histidyl-tRNA syn 23.8 12 0.00026 36.2 -2.3 22 258-279 74-95 (429)
98 PRK14426 acylphosphatase; Prov 23.7 1.8E+02 0.004 21.4 4.6 31 258-292 33-63 (92)
99 PRK13397 3-deoxy-7-phosphohept 23.4 1.4E+02 0.0031 26.6 4.5 38 66-105 183-226 (250)
100 COG2022 ThiG Uncharacterized e 23.1 2.1E+02 0.0047 25.4 5.4 33 66-102 181-213 (262)
101 TIGR01120 rpiB ribose 5-phosph 23.1 1E+02 0.0022 25.0 3.3 28 190-217 79-106 (143)
102 PHA02892 hypothetical protein; 22.4 42 0.0009 23.6 0.8 51 40-101 3-54 (75)
103 COG5503 Uncharacterized conser 22.4 79 0.0017 22.0 2.1 17 274-290 23-39 (69)
104 PRK05571 ribose-5-phosphate is 22.2 1.1E+02 0.0024 24.9 3.4 30 69-100 2-33 (148)
105 PRK01215 competence damage-ind 22.2 3.1E+02 0.0068 24.5 6.6 35 263-297 217-251 (264)
106 cd04905 ACT_CM-PDT C-terminal 22.0 1.6E+02 0.0036 20.6 4.0 36 259-294 30-69 (80)
107 cd06059 Tubulin The tubulin su 21.9 2.1E+02 0.0046 27.0 5.8 47 42-91 69-115 (382)
108 PTZ00215 ribose 5-phosphate is 21.8 1.2E+02 0.0027 24.8 3.6 31 68-100 3-37 (151)
109 cd01520 RHOD_YbbB Member of th 21.5 1.8E+02 0.0038 22.5 4.4 33 66-100 85-118 (128)
110 PF01361 Tautomerase: Tautomer 21.1 1.9E+02 0.0042 18.9 4.0 29 270-298 1-30 (60)
111 KOG0119|consensus 20.9 1.3E+02 0.0027 29.6 3.9 31 266-297 200-230 (554)
112 PF01170 UPF0020: Putative RNA 20.8 1E+02 0.0022 25.7 3.0 26 67-92 28-53 (179)
113 PF07831 PYNP_C: Pyrimidine nu 20.6 1.4E+02 0.0031 21.2 3.3 13 268-280 47-59 (75)
114 TIGR01119 lacB galactose-6-pho 20.1 1.5E+02 0.0031 24.9 3.7 30 69-100 2-33 (171)
No 1
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=7.1e-56 Score=428.79 Aligned_cols=248 Identities=43% Similarity=0.731 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcC--CCceEEEEccccCCCCCCCCCCCCCCCc
Q psy232 42 SEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIE--SKLKIEVYNQDVTTQGKLNFQCGADFAK 119 (299)
Q Consensus 42 ~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg--~~~~v~~ln~~~d~~~~~n~~~g~~~p~ 119 (299)
+.|++++.+.|..+++.+. ..+.+++|||+||+||+++.+++++|+.|| | +++.+|+.|||...+|+.||+.+++
T Consensus 163 ~~Y~~~l~~~f~~lv~~~~-~~~~~~~kVvvD~aNGag~~~~~~ll~~Lg~~~--~v~~in~~~dg~~~~n~~~ga~~l~ 239 (513)
T cd03086 163 EGYYEKLSKAFNELYNLLQ-DGGDEPEKLVVDCANGVGALKLKELLKRLKKGL--SVKIINDGEEGPELLNDGCGADYVK 239 (513)
T ss_pred HHHHHHHHHHHHHHHhhcc-ccccCCCEEEEECCCcHHHHHHHHHHHHcCCCc--EEEEEccCCCCcccCCCCcccccHH
Confidence 6799999998765433221 122578999999999999999999999999 8 9999999999843799999999998
Q ss_pred ccccCCccccccC-CCcEEEEeCCCCCeeEEeeeCCCC--CeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeee
Q psy232 120 TKKIVPTGVNIKN-LNNKYLSVDGDADRIIYWYPNEDN--TIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAY 196 (299)
Q Consensus 120 ~~~~~~~~l~~~~-~adlGia~DgDgDR~~~~~vd~~G--~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ 196 (299)
.++..|..... . ++|+|+||||||||+++ +|++| +|++++||++++|+++++++.....+....++.+||+|++
T Consensus 240 ~l~~~v~~~~~-~~~adlgiA~DGDADRl~~--vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~~~~VV~tv~ 316 (513)
T cd03086 240 TKQKPPRGFEL-KPPGVRCCSFDGDADRLVY--FYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAY 316 (513)
T ss_pred HHHHHHHhcCC-CCCccEEEEECCCCCcEEE--EEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEec
Confidence 77776766321 1 49999999999999999 76654 7788999999999999998753100100112357999999
Q ss_pred eChhHHHHHHHhCCCeEEEecCchHHHHHHHHhCCc-c------------------------------------------
Q psy232 197 TNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDT-I------------------------------------------ 233 (299)
Q Consensus 197 ss~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~~~-i------------------------------------------ 233 (299)
||..+.+++++.+|+++++|+||+||+.++|+++++ +
T Consensus 317 sn~~~~~~l~~~~G~~~~~t~vG~k~v~~~m~e~~~~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (513)
T cd03086 317 ANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFDIGVYFEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSR 396 (513)
T ss_pred cchHHHHHHHHHcCceEEEeCCcHHHHHHHHHHhCcceEEeccCCEEEEECchHHhhhhhhccccchhhhHHHHHHHHHH
Confidence 999999999987799999999999999999999764 0
Q ss_pred -----------------------------------------------cc--------cccccCChhhhhHHHHhhhhcCC
Q psy232 234 -----------------------------------------------NA--------DTEIVEPLGMQDSINKSVAKFNN 258 (299)
Q Consensus 234 -----------------------------------------------~~--------~~~~~~~~~~~~~iDGik~~~~~ 258 (299)
.. ++.+++|...++.+||+++.+++
T Consensus 397 ~~n~~~gDgi~~al~vl~~l~~~~~~lsel~~~y~~~p~~~~~v~v~~~~~~~~~~~e~~~~~p~~l~~~iDG~~~~~~~ 476 (513)
T cd03086 397 LINQTVGDAISDMLAVELILAALGWSPQDWDNLYTDLPNRQLKVKVPDRSVIKTTDAERRLVEPKGLQDKIDAIVAKYNN 476 (513)
T ss_pred hhCCCCcHHHHHHHHHHHHHHHhCCCHHHHHhhchhcCeeeeEEEecCccchhhhhHHhhccccHHHHHHHHHHHhcCCC
Confidence 00 00112234567899999999999
Q ss_pred ceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 259 ARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 259 gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
||+|||||||||+||||+||+|++.++++++++.++|
T Consensus 477 gr~lVRpSGTEp~iRvyaEA~t~~~~~~l~~~i~~~v 513 (513)
T cd03086 477 GRAFVRPSGTEDVVRVYAEAATQEEADELANEVAELV 513 (513)
T ss_pred eeEEEecCCCCcEEEEEEEeCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999988764
No 2
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.5e-55 Score=421.11 Aligned_cols=264 Identities=22% Similarity=0.276 Sum_probs=212.2
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc-----------------------------ccHHHHHHHHHHHHHHhhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV-----------------------------FEESEYFTHFGNAYLSYQKFL 59 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~-----------------------------~~~~~Y~~~l~~~~~~~~~~i 59 (299)
=||||||||++||||||++++|.++++..+ +..+.|++.+.+.++ .+
T Consensus 95 i~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~i~--~~-- 170 (448)
T PRK14316 95 VMISASHNPVEDNGIKFFGSDGFKLSDEQEDEIEALLDAEEDTLPRPSGEGLGTVSDYPEGLRKYLQFLKSTID--ED-- 170 (448)
T ss_pred EEEEecCCChhhCcEEEEcCCCCcCCHHHHHHHHHHHhccccccccCccccceeEEEeCcHHHHHHHHHHHhcC--cc--
Confidence 389999999999999999999987754311 234556666666554 11
Q ss_pred hccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEE
Q psy232 60 LTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLS 139 (299)
Q Consensus 60 ~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia 139 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.||+ .++|+.|++.+|+.+...+.. .+||+|++
T Consensus 171 -----~~~lkvvvD~~nG~~~~~~~~ll~~lg~--~v~~in~~~dg-~~~~~~~~~~~~~~l~~~v~~----~~adlGia 238 (448)
T PRK14316 171 -----LSGLKVALDCANGATSSLAPRLFADLGA--DVTVIGTSPDG-LNINDGVGSTHPEALQELVVE----KGADLGLA 238 (448)
T ss_pred -----cCCCEEEEECCCchhhHHHHHHHHHcCC--eEEEEccCCCC-CCCCCCCCCCCHHHHHHHHhh----cCCCEEEE
Confidence 2589999999999999999999999999 99999999998 788888888777655555555 89999999
Q ss_pred eCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCc
Q psy232 140 VDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTG 219 (299)
Q Consensus 140 ~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G 219 (299)
|||||||+++ +|++|+ ++++|++++|+++++++....+ .+.||.++.||..+.+.+++ +|+++++||||
T Consensus 239 ~DgDaDR~~~--vd~~G~--~i~~d~~~~l~a~~ll~~~~~~------~~~vv~~v~ss~~~~~~~~~-~g~~v~~~~vG 307 (448)
T PRK14316 239 FDGDADRLIA--VDENGN--IVDGDKIMFICGKYLKEKGRLK------KNTIVTTVMSNLGFYKALEE-EGINSVKTKVG 307 (448)
T ss_pred EcCCCceEEE--ECCCCC--EeCHHHHHHHHHHHHHHhCCCC------CCeEEEeccCchHHHHHHHH-cCCeEEEeCCh
Confidence 9999999988 999994 5999999999999998763111 24677665555565566666 89999999999
Q ss_pred hHHHHHHHHhCCcc---------------------------------c------------------------ccccccCC
Q psy232 220 VKHLHHEALKYDTI---------------------------------N------------------------ADTEIVEP 242 (299)
Q Consensus 220 ~k~i~~~~~~~~~i---------------------------------~------------------------~~~~~~~~ 242 (299)
++|++++|.+.+++ . .+..++.+
T Consensus 308 ~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ile~l~~~~~~ls~l~~~~~~~p~~~~~~~v~~k~~~~~~ 387 (448)
T PRK14316 308 DRYVVEEMRKGGYNLGGEQSGHIIFLDYNTTGDGLLTALQLAKVMKETGKKLSELAAEMKKYPQKLVNVRVTDKKKAMEN 387 (448)
T ss_pred HHHHHHHHHhcCCeEEEcCcccEEecccCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhhhhcCcceEEeEeCCccccccC
Confidence 99999999976530 0 00011112
Q ss_pred hhhhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 243 LGMQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 243 ~~~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
.+.++.++++++.+ ++||+|||||||||++|||+||.|++.++++++++.++|+++|
T Consensus 388 ~~~~~~i~~i~~~~~~~gw~liRpS~TEP~irvy~Ea~~~e~~~~l~~~~~~~i~~~~ 445 (448)
T PRK14316 388 PEIKEIIEKVEEEMAGNGRVLVRPSGTEPLVRVMAEAPTQEEVDKYVDRIADVVEAEM 445 (448)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCCcEEEEEEEeCCHHHHHHHHHHHHHHHHHHh
Confidence 33456788988776 6799999999999999999999999999999999999999876
No 3
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=7.8e-55 Score=423.71 Aligned_cols=251 Identities=41% Similarity=0.648 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC-----CCCCCeEEEcCCCCCcHHHHHHHHHHc---CCCceEEEEccccCCCCCCCCC
Q psy232 41 ESEYFTHFGNAYLSYQKFLLTDN-----KSYSQDIYFDGANGVGGVKIKELQKII---ESKLKIEVYNQDVTTQGKLNFQ 112 (299)
Q Consensus 41 ~~~Y~~~l~~~~~~~~~~i~~~~-----~~~~~kIvvD~~nG~~~~~~~~ll~~l---g~~~~v~~ln~~~d~~~~~n~~ 112 (299)
.+.|++++...|..+.+.+.... .....+|+|||+||+|+..++++++.| |+ +++.+|+.+|+...+|+.
T Consensus 214 e~~Y~~~~~~~f~~l~~~~~~~~~~~~~~~~~~kVvVD~ANGvg~~~~~~ll~~L~~~g~--~v~~in~~~dg~~~lN~~ 291 (585)
T PTZ00302 214 DELYYAYLLAAFKELYRTLQEGGPVDLTQNNSKILVVDCANGVGGYKIKRFFEALKQLGI--EIIPININCDEEELLNDK 291 (585)
T ss_pred HHHHHHHHHHHHHHHHhhCCccccccccccCCCeEEEECCCcHHHHHHHHHHHHhhhCCC--EEEEEecCCCCCCCCCCC
Confidence 46688888888886443322100 012368999999999999999999999 77 999999999986699999
Q ss_pred CCCCCCcccccCCccccccCCCcEE------EEeCCCCCeeEEeeeCC----CCCeeeechHHHHHHHHHHHHHHHhhcC
Q psy232 113 CGADFAKTKKIVPTGVNIKNLNNKY------LSVDGDADRIIYWYPNE----DNTIHLLDGDRIAVLFAMYINELIARCN 182 (299)
Q Consensus 113 ~g~~~p~~~~~~~~~l~~~~~adlG------ia~DgDgDR~~~~~vd~----~G~~~~l~gd~~~~Lla~~ll~~~~~~~ 182 (299)
||+++++..+..|.+ .++|+| ++|||||||+++ +|+ ++.|++|+||++++|+|.++++..++.+
T Consensus 292 cGad~vk~lq~~p~~----~~ad~G~~~~~~~sfDGDADRlv~--~d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~ 365 (585)
T PTZ00302 292 CGADYVQKTRKPPRA----MKEWPGDEETRVASFDGDADRLVY--FFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQ 365 (585)
T ss_pred CccccHHHHHHHHHh----cCCCcCccCCeeEEECCCCCeEEE--EEecCCCCccceecCHHHHHHHHHHHHHHHhhhcC
Confidence 999999988888877 667887 999999999999 555 3467789999999999999977522212
Q ss_pred CCcccCCceEEeeeeChhHHHHHHHhCC-CeEEEecCchHHHHHHHHhCCc-c---------------------------
Q psy232 183 LKDKVNIKVIQTAYTNGNCTNYIKNTLN-IDVIFTSTGVKHLHHEALKYDT-I--------------------------- 233 (299)
Q Consensus 183 ~~~~~~~~vv~t~~ss~~~~~~i~~~~g-~~v~~t~~G~k~i~~~~~~~~~-i--------------------------- 233 (299)
...+++.+||+|+++|+++++++++..| ++|++||||+||++++|.++++ |
T Consensus 366 ~~~~l~igVVqTayaNgast~yl~~~lg~~~v~~t~tGvk~l~~~a~e~di~iyfEaNGHGTvif~~~~~~~~~~~~~~~ 445 (585)
T PTZ00302 366 LKKKLDIGVVQTAYANGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYDIGIYFEANGHGTVLFNEKALAEWAKFLAKQ 445 (585)
T ss_pred CCCCccceEEEeccCCHHHHHHHHHhcCCeeEEEEeCchHHHHHHHHhcCCeEEEccCCCEEEEECcHHHhhhhhhcccc
Confidence 1112445899999999999999999779 9999999999999999999875 1
Q ss_pred --------------------------------------------------------------c--------ccccccCCh
Q psy232 234 --------------------------------------------------------------N--------ADTEIVEPL 243 (299)
Q Consensus 234 --------------------------------------------------------------~--------~~~~~~~~~ 243 (299)
+ .++.+++|.
T Consensus 446 ~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v~~iL~~~~~sl~e~~~~y~dlP~~~~kv~v~~r~~i~t~d~e~~~v~P~ 525 (585)
T PTZ00302 446 NALNSACRQLEKFLRLFNQTIGDAISDLLAVELALAFLGLSFQDWLNLYTDLPSRQDKVTVKDRTLITNTEDETRLLEPK 525 (585)
T ss_pred chhhhHHHHHHHhHhhhcCCCccHHHHHHHHHHHHHhhCCCHHHHHhhcccCCceeeeeEeccCcccccchHhhhcccHH
Confidence 0 012344556
Q ss_pred hhhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 244 GMQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 244 ~~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
.+++.+|++.+.+ ++||+|||||||||+||||+||+|++.++++++++.++|+++|
T Consensus 526 ~Lq~~id~~~~~~~~~gr~lvRpSGTEp~vRvyaEA~t~~~a~~l~~~v~~~v~~~~ 582 (585)
T PTZ00302 526 GLQDKIDAIVSKYDNAARAFIRPSGTEPVVRVYAEAPTLEQADELANEVKGLVLRYC 582 (585)
T ss_pred HHHHHHHHHHhhccCCceEEEEcCCCCcEEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence 7788999999888 8899999999999999999999999999999999999999886
No 4
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.8e-54 Score=414.74 Aligned_cols=257 Identities=25% Similarity=0.314 Sum_probs=207.6
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc---------------------------cccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR---------------------------VFEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~---------------------------~~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++++.. .+..+.|++++.+.++. ..
T Consensus 92 I~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~~~~--~~--- 166 (434)
T cd05802 92 VVISASHNPFEDNGIKFFSSDGYKLPDEVEEEIEALIDKELELPPTGEKIGRVYRIDDARGRYIEFLKSTFPK--DL--- 166 (434)
T ss_pred EEEEecCCchhhCCEEEECCCCCcCCHHHHHHHHHHHhCccccccccccCeeEEEccchHHHHHHHHHHhcCc--cc---
Confidence 48999999999999999999998876521 13457788888887762 21
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeC
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVD 141 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~D 141 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.||+ .++|+.|++.+++.+...+.. .+||+|++||
T Consensus 167 ---~~~lkVvvD~~nG~~~~~~~~ll~~lg~--~v~~in~~~dg-~~~~~~~~~~~~~~l~~~v~~----~~adlGia~D 236 (434)
T cd05802 167 ---LSGLKIVLDCANGAAYKVAPEVFRELGA--EVIVINNAPDG-LNINVNCGSTHPESLQKAVLE----NGADLGIAFD 236 (434)
T ss_pred ---cCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEecCCCCC-CCCCCCCCccCHHHHHHHHHh----cCCCEEEEEc
Confidence 2689999999999999999999999999 99999999998 677877776666544444444 8999999999
Q ss_pred CCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchH
Q psy232 142 GDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVK 221 (299)
Q Consensus 142 gDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k 221 (299)
|||||+++ +|++|++ +++|++++|+++++++..+.+ .+.||.++.||..+.+.+++ +|+++++||||++
T Consensus 237 gDgDR~~~--vd~~G~~--i~~d~~~~l~a~~l~~~~~~~------~~~vv~~v~ss~~~~~~~~~-~g~~v~~~~~G~~ 305 (434)
T cd05802 237 GDADRVIA--VDEKGNI--VDGDQILAICARDLKERGRLK------GNTVVGTVMSNLGLEKALKE-LGIKLVRTKVGDR 305 (434)
T ss_pred CCCceEEE--ECCCCCE--eCHHHHHHHHHHHHHHhCCCC------CCeEEEecCCcHHHHHHHHH-cCCeEEEEcChHH
Confidence 99999988 9999955 999999999999998763111 24678776666666666666 8999999999999
Q ss_pred HHHHHHHhCCcc---------------------------------------------------------cccccccCChh
Q psy232 222 HLHHEALKYDTI---------------------------------------------------------NADTEIVEPLG 244 (299)
Q Consensus 222 ~i~~~~~~~~~i---------------------------------------------------------~~~~~~~~~~~ 244 (299)
+++++|.+.+++ +.+..+++...
T Consensus 306 ~i~~~~~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~la~~~~~ls~l~~~l~~~~~~~~~v~~~~~~~~~~~~~ 385 (434)
T cd05802 306 YVLEEMLKHGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSELASDMKLYPQVLVNVRVKDKKALLENPR 385 (434)
T ss_pred HHHHHHHhcCCEEEEecCCCEEecCcCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhccccCeeeEEEEeCCccccccCHH
Confidence 999999987640 00011222234
Q ss_pred hhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHH
Q psy232 245 MQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEI 291 (299)
Q Consensus 245 ~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~ 291 (299)
.++.+||+++.+ ++||+|||||||||++|||+||+|++++++|++++
T Consensus 386 ~~~~~~~~~~~~~~~gW~liRpS~tep~irv~~Ea~s~~~~~~l~~~~ 433 (434)
T cd05802 386 VQAAIAEAEKELGGEGRVLVRPSGTEPLIRVMVEGEDEELVEKLAEEL 433 (434)
T ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCcEEEEEEeeCCHHHHHHHHHhh
Confidence 567789999887 48999999999999999999999999999999875
No 5
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=7.5e-54 Score=411.72 Aligned_cols=265 Identities=19% Similarity=0.195 Sum_probs=205.8
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc----------------------------ccHHHHHHHHHHHHHHhhhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV----------------------------FEESEYFTHFGNAYLSYQKFLL 60 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~----------------------------~~~~~Y~~~l~~~~~~~~~~i~ 60 (299)
=||||||||++||||||++++|.++++..+ +..+.|++.+.+.++. . ++
T Consensus 97 i~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~id~--~-i~ 173 (448)
T PRK14315 97 VMISASHNPFEDNGIKLFGPDGFKLSDEIELEIEALLDGDLDKRLAAPADIGRAKRIDDAHGRYIEFAKRTLPR--D-LR 173 (448)
T ss_pred EEEEcCCCCcccCCEEEECCCCCcCCHHHHHHHHHHHhccccccccccccCcceEEecchHHHHHHHHHHhccc--c-cc
Confidence 399999999999999999999988754310 2345677777776652 2 32
Q ss_pred ccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEe
Q psy232 61 TDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSV 140 (299)
Q Consensus 61 ~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~ 140 (299)
.+++|||+|++||+++.+++.+|++||| +++.+|+.||+ .++++.+++..+..+...+.. .+||+|++|
T Consensus 174 ----~~~lkVvvD~~~G~~~~~~~~ll~~lG~--~v~~i~~~~dg-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~ 242 (448)
T PRK14315 174 ----LDGLRVVVDCANGAAYKVAPEALWELGA--EVITIGVEPNG-FNINEECGSTHPEALAKKVRE----VRADIGIAL 242 (448)
T ss_pred ----cCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEeccCCCC-CCCCCCCCCCCHHHHHHHHHH----cCCCEEEEE
Confidence 4689999999999999999999999999 99999999998 555555444333322223333 889999999
Q ss_pred CCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCch
Q psy232 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGV 220 (299)
Q Consensus 141 DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~ 220 (299)
||||||+++ +|++| +++++|++++|+++++++....+ ++.||.++.||..+ +.+++.+|+++++||||+
T Consensus 243 DgDgDR~~i--vd~~G--~~i~~d~~~~l~a~~ll~~~~~~------~~~vV~~v~ss~~i-~~~a~~~g~~v~~t~vG~ 311 (448)
T PRK14315 243 DGDADRVII--VDEKG--HVVDGDQLMALIAESWAEDGRLR------GGGIVATVMSNLGL-ERFLADRGLTLERTAVGD 311 (448)
T ss_pred cCCCceEEE--EcCCC--cEeCHHHHHHHHHHHHHHhCCCC------CCeEEEEecCChHH-HHHHHHcCCeEEEeCChH
Confidence 999999999 99999 45999999999999998753111 24677665555554 555555999999999999
Q ss_pred HHHHHHHHhCCcc------------------------------------------c--------cc------ccccCChh
Q psy232 221 KHLHHEALKYDTI------------------------------------------N--------AD------TEIVEPLG 244 (299)
Q Consensus 221 k~i~~~~~~~~~i------------------------------------------~--------~~------~~~~~~~~ 244 (299)
++++++|.+.+++ + .+ ...+....
T Consensus 312 ~~i~~~m~~~~~~~ggE~sg~~~f~~~~~~~Dgi~a~l~lle~la~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (448)
T PRK14315 312 RYVVEHMREGGFNLGGEQSGHIVLSDYATTGDGLVAALQVLAVVVRSGRPASEVCRRFEPVPQLLKNVRYSGGKPLEDAS 391 (448)
T ss_pred HHHHHHHHhCCCceeecccccEeecccCCCCcHHHHHHHHHHHHHHhCCCHHHHhhhcCcCCeeeeEEecCCcccCCCHH
Confidence 9999999976530 0 00 00111123
Q ss_pred hhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhh
Q psy232 245 MQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 245 ~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
.++.+||+++.+ ++||+|||||||||++|||+||+|++.+++|++++.++|++.
T Consensus 392 ~~~~~~~~~~~~~~~gWvLiRpS~teP~iri~~Ea~s~~~~~~l~~~~~~~i~~~ 446 (448)
T PRK14315 392 VKSAIADAEARLNGSGRLLIRPSGTEPLIRVMAEGDDRALVEEVVDEIVDAVSAA 446 (448)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 456789999887 589999999999999999999999999999999999999764
No 6
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.3e-54 Score=416.87 Aligned_cols=255 Identities=22% Similarity=0.197 Sum_probs=202.3
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc--------------------------ccHHHHHHHHHHHHHHhhhhhhcc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV--------------------------FEESEYFTHFGNAYLSYQKFLLTD 62 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~--------------------------~~~~~Y~~~l~~~~~~~~~~i~~~ 62 (299)
=||||||||++||||||++++|.++++..+ +..+.|++++.+.++ .
T Consensus 91 I~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~~g~~~~~~~~~~Y~~~l~~~~~--~------ 162 (449)
T PRK14321 91 VTITASHNPPEYNGIKVWQRNGMAYTPEMENELERIIESGNFKRVPWNEIGTLRRADPKEEYIKAALEMIK--L------ 162 (449)
T ss_pred EEEEeCCCCHHHCcEEEECCCCCcCCHHHHHHHHHHHhcccccccccccCceeeecccHHHHHHHHHHhcC--c------
Confidence 499999999999999999999998875422 234556666655554 1
Q ss_pred CCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCcE
Q psy232 63 NKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNNK 136 (299)
Q Consensus 63 ~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~adl 136 (299)
.+++|||+||+||+++.+++.+|++||| +++.+|+.||+ . |+..+.|.++++..+ .+||+
T Consensus 163 --~~~~kVvvD~~~G~~~~~~~~il~~lg~--~v~~i~~~~d~-~---------f~~~p~p~~~~l~~l~~~v~~~~adl 228 (449)
T PRK14321 163 --ENSYTVVVDSGNGAGSILSPYLQRELGN--KVISLNSHPSG-F---------FVRELEPNAKSLSMLAKTVKVLKADV 228 (449)
T ss_pred --CCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEeCccCCC-C---------CCCCCCCchhhHHHHHHHHHHCCCCE
Confidence 3689999999999999999999999999 99999999997 2 222223445555443 78999
Q ss_pred EEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEe
Q psy232 137 YLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFT 216 (299)
Q Consensus 137 Gia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t 216 (299)
|++|||||||+++ +|++|++ +++|++++|+++++++.. + ++.||.+ ++++.+.+.+++.+|+++++|
T Consensus 229 Gia~DgD~DR~~v--vd~~G~~--~~~d~~~~l~a~~ll~~~--~------~~~vV~~-v~ss~~i~~~a~~~g~~v~~t 295 (449)
T PRK14321 229 GIAHDGDADRIGV--VDDQGNF--VEYEVMLSLIAGYMLRKF--G------KGKIVTT-VDAGFALDDYIRPLGGEVIRT 295 (449)
T ss_pred EEEecCCCceEEE--ECCCCCE--eChHHHHHHHHHHHHHhC--C------CCcEEEe-ccccHHHHHHHHHcCCEEEEE
Confidence 9999999999999 9999966 999999999999998753 1 2467766 445544555565599999999
Q ss_pred cCchHHHHHHHHhCCcc--------------------------------c--------------------------ccc-
Q psy232 217 STGVKHLHHEALKYDTI--------------------------------N--------------------------ADT- 237 (299)
Q Consensus 217 ~~G~k~i~~~~~~~~~i--------------------------------~--------------------------~~~- 237 (299)
|||+++++++|.+.+++ . .+.
T Consensus 296 ~vG~~~i~~~m~~~~~~~ggE~sGg~~~~~~~~~~Dgi~a~~~ile~la~~~~Ls~l~~~~~~~~~~~~~v~~~~~~k~~ 375 (449)
T PRK14321 296 RVGDVAVAEELAKHGGVFGGEPSGTWIIPQWNLTPDGIFAGALVLEMIDRLGPISELAKEVPRYVTLRAKIPCPNEKKAK 375 (449)
T ss_pred ecChHHHHHHHHhhCCEEEecCCCCEEeCCcCCCCCHHHHHHHHHHHHHcCCCHHHHHHhccccccccccccCchhhHHH
Confidence 99999999999976530 0 000
Q ss_pred ---cccC--C----hhhhhHHHHhhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhh
Q psy232 238 ---EIVE--P----LGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 238 ---~~~~--~----~~~~~~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
.+.+ + ...++++||+|+.+++||+|||||||||++|||+||+|++++++|++.+.++|+++
T Consensus 376 ~~~~l~~~~~~~~~~~~v~~~DGvkv~~~~~WvliRpS~TeP~~riy~Ea~s~e~~~~l~~~~~~~i~~~ 445 (449)
T PRK14321 376 AMEIIAKEALKNFDYERLIDIDGIRIENDDWWILFRPSGTEPIMRITLEAHTEEKAEELMEKAEKLVKEA 445 (449)
T ss_pred HHHHHHHHhhhhcccCceeecceEEEecCCcEEEEecCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 0000 0 12357789999998889999999999999999999999999999999999999875
No 7
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=1.1e-54 Score=417.05 Aligned_cols=254 Identities=17% Similarity=0.181 Sum_probs=196.6
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc------------------------cccHHHHHHHHHHHHHHhhhhhhccCC
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR------------------------VFEESEYFTHFGNAYLSYQKFLLTDNK 64 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~------------------------~~~~~~Y~~~l~~~~~~~~~~i~~~~~ 64 (299)
=||||||||++||||||+++ |+++.+.. .+..+.|++.+.+.++ .+
T Consensus 91 I~ITASHNP~~~nGiK~~~~-G~~~~~~~~~~Ie~~~~~~~~~~~~~~g~~~~~d~~~~Y~~~l~~~i~--~~------- 160 (443)
T cd03089 91 VMITASHNPPEYNGFKIVIG-GGPLSGEDIQALRERAEKGDFAAATGRGSVEKVDILPDYIDRLLSDIK--LG------- 160 (443)
T ss_pred EEEecCCCCcccCceEeccC-CCCCCHHHHHHHHHHHHhccccccCCCCcEEECCCHHHHHHHHHHhcc--cc-------
Confidence 39999999999999999999 88876432 1445677777777665 11
Q ss_pred CCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCcEEE
Q psy232 65 SYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNNKYL 138 (299)
Q Consensus 65 ~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~adlGi 138 (299)
.+++||++||+||+++.+++++|++||| +++.+|+.||| .+ ++..|++. .++++..+ .+||+|+
T Consensus 161 ~~~lkVvvd~~~G~~~~~~~~ll~~lG~--~v~~i~~~~d~-~F-----~~~~p~p~--~~~~l~~l~~~v~~~~adlgi 230 (443)
T cd03089 161 KRPLKVVVDAGNGAAGPIAPQLLEALGC--EVIPLFCEPDG-TF-----PNHHPDPT--DPENLEDLIAAVKENGADLGI 230 (443)
T ss_pred cCCCeEEEECCCCchHHHHHHHHHHCCC--EEEEecCCCCC-CC-----CCCCcCCC--CHHHHHHHHHHHHHcCCCEEE
Confidence 2689999999999999999999999999 99999999997 32 22222211 12233222 7899999
Q ss_pred EeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecC
Q psy232 139 SVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTST 218 (299)
Q Consensus 139 a~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~ 218 (299)
+|||||||+++ +|++|++ +++|++++|+++++++.. ++ ..||.+++||..+.+.++ .+|++++||+|
T Consensus 231 a~D~DaDR~~i--vd~~G~~--l~~d~~~~lla~~ll~~~--~~------~~vv~~v~ss~~~~~ia~-~~g~~v~~t~v 297 (443)
T cd03089 231 AFDGDGDRLGV--VDEKGEI--IWGDRLLALFARDILKRN--PG------ATIVYDVKCSRNLYDFIE-EAGGKPIMWKT 297 (443)
T ss_pred EecCCcceeEE--ECCCCcE--eCHHHHHHHHHHHHHHHC--CC------CeEEEecccchHHHHHHH-HcCCeEEEecC
Confidence 99999999999 9999955 999999999999998763 11 357766555555555554 48999999999
Q ss_pred chHHHHHHHHhCCcc--------------------------------------------------cccc-cccCC-----
Q psy232 219 GVKHLHHEALKYDTI--------------------------------------------------NADT-EIVEP----- 242 (299)
Q Consensus 219 G~k~i~~~~~~~~~i--------------------------------------------------~~~~-~~~~~----- 242 (299)
|+||++++|.+.+++ ..++ .+-.+
T Consensus 298 G~k~v~~~m~~~~~~~ggE~sgg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~Lsel~~~~p~~~~~~~~~~~~~~~~k~ 377 (443)
T cd03089 298 GHSFIKAKMKETGALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSKSGKTLSELLADLPKYFSTPEIRIPVTEEDKF 377 (443)
T ss_pred cHHHHHHHHHHhCCcEEEeccceEEEcCCcCCCccHHHHHHHHHHHHHhcCCCHHHHHHhccccCCCCceeccCCchhHH
Confidence 999999999975420 0000 00001
Q ss_pred -----------hh--hhhHHHHhhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 243 -----------LG--MQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 243 -----------~~--~~~~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
.. .++++||+|+.+++||+|||||||||++|||+||+|++++++|++++.+++
T Consensus 378 ~~~~~l~~~~~~~~~~~~~~DGiki~~~~~WvliRpSgtEP~iriy~Ea~~~~~a~~l~~~~~~~~ 443 (443)
T cd03089 378 AVIERLKEHFEFPGAEIIDIDGVRVDFEDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRKLL 443 (443)
T ss_pred HHHHHHHHHhccccCCeeeecCEEEEECCeeEEEeecCCCCEEEEEEEeCCHHHHHHHHHHHHhhC
Confidence 01 356689999999999999999999999999999999999999999988753
No 8
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=1.2e-54 Score=416.60 Aligned_cols=255 Identities=16% Similarity=0.151 Sum_probs=196.9
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc---------------------------ccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV---------------------------FEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~---------------------------~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++++..+ +..+.|++++.+.++ .+.|+
T Consensus 89 i~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~i~--~~~i~- 165 (441)
T cd05805 89 IHVRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFREDFRRAHVDEIGDITEPPDFVEYYIRGLLRALD--TSGLK- 165 (441)
T ss_pred EEEEeCCCCccceEEEEECCCCCcCCHHHHHHHHHHHhhhhhccccHhhcCccccchhHHHHHHHHHHHHhC--HHHHh-
Confidence 499999999999999999999988764321 234557777766665 23332
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCc
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNN 135 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~ad 135 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.+|++. ++. +.+.++++..+ .+||
T Consensus 166 ---~~~lkIvvd~~~G~~~~~~~~ll~~lG~--~v~~i~~~~d~~~---------~~~-~~~~~~~l~~l~~~v~~~~ad 230 (441)
T cd05805 166 ---KSGLKVVIDYAYGVAGIVLPGLLSRLGC--DVVILNARLDEDA---------PRT-DTERQRSLDRLGRIVKALGAD 230 (441)
T ss_pred ---hcCCeEEEECCCchHHHHHHHHHHHcCC--EEEEEecccCCcc---------CCC-CccchhHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999 9999999999721 111 11123333322 7899
Q ss_pred EEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEE
Q psy232 136 KYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIF 215 (299)
Q Consensus 136 lGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~ 215 (299)
+|++|||||||+++ +|++|++ ++||++++|+++++++.. + ++.||.++.||..+.+ +++.+|+++++
T Consensus 231 lgia~DgDaDR~~v--vd~~G~~--~~gd~l~~l~a~~ll~~~--~------~~~vv~~v~ss~~l~~-~a~~~g~~~~~ 297 (441)
T cd05805 231 FGVIIDPNGERLIL--VDEAGRV--ISDDLLTALVSLLVLKSE--P------GGTVVVPVTAPSVIEQ-LAERYGGRVIR 297 (441)
T ss_pred EEEEEcCCCCEEEE--ECCCCCE--EChhHHHHHHHHHHHHhC--C------CCeEEEEccchHHHHH-HHHHcCCEEEE
Confidence 99999999999998 9999966 999999999999998742 1 2467767665655544 45558999999
Q ss_pred ecCchHHHHHHHHhCCc----------c----------------------c---------------------------cc
Q psy232 216 TSTGVKHLHHEALKYDT----------I----------------------N---------------------------AD 236 (299)
Q Consensus 216 t~~G~k~i~~~~~~~~~----------i----------------------~---------------------------~~ 236 (299)
|+||++|+.++|.+ ++ + . .+
T Consensus 298 t~vG~~~i~~~m~~-~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 376 (441)
T cd05805 298 TKTSPQALMEAALE-NVVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLARTNISLSQIVDELPRFYVLHKEVPCPWEAK 376 (441)
T ss_pred EeCChHHHHHHHHh-cccccccCCCcEEccccccCchHHHHHHHHHHHHHhcCCCHHHHHHhCchhheeeeEEECChHHh
Confidence 99999999999986 32 0 0 00
Q ss_pred ccccC------ChhhhhHHHHhhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 237 TEIVE------PLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 237 ~~~~~------~~~~~~~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
..+++ +...++.+||+|+.+++||+|||||||||++|||+||+|++.++++++++.++|
T Consensus 377 ~~~~~~l~~~~~~~~~~~~DGvri~~~~gW~liRpS~TeP~iri~~Ea~~~~~~~~l~~~~~~~~ 441 (441)
T cd05805 377 GRVMRRLIEEAPDKSIELIDGVKIYEDDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVEKV 441 (441)
T ss_pred hHHHHHHHHhcCCCCceecceeEEecCCCEEEEecCCCCCEEEEEEecCCHHHHHHHHHHHHhhC
Confidence 01110 011256789999999999999999999999999999999999999999988764
No 9
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-53 Score=412.29 Aligned_cols=266 Identities=22% Similarity=0.267 Sum_probs=203.1
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc---------------------------cccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR---------------------------VFEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~---------------------------~~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++++.. .+..+.|++++.+.++ .+ |+
T Consensus 110 I~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~id--~~-i~- 185 (465)
T PRK14317 110 LMISASHNPPEDNGIKFFGADGTKLSPELQAQIEAGLRGELSSSDNASNWGRHYHRPELLDDYRDALLESLP--DR-VN- 185 (465)
T ss_pred EEEeCCCCCcccCCEEEEcCCCCcCCHHHHHHHHHHHhcccccccchhcCCceEecCChHHHHHHHHHHhcC--cc-cc-
Confidence 38999999999999999999999886532 1345667777777766 22 32
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeC
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVD 141 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~D 141 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.||| .++++.|++.+...+...+.. .+||+|++||
T Consensus 186 ---~~~~kVvvD~~nG~~~~~~~~ll~~LG~--~v~~l~~~~dg-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~D 255 (465)
T PRK14317 186 ---LQGVKIVLDLAWGAAVACAPEVFKALGA--EVICLHDQPDG-DRINVNCGSTHLEPLQAAVLE----HGADMGFAFD 255 (465)
T ss_pred ---cCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEecccCC-CCCCCCCchHhHHHHHHHHHh----cCCCEEEEEC
Confidence 4689999999999999999999999999 99999999998 566665554433333333333 7899999999
Q ss_pred CCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchH
Q psy232 142 GDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVK 221 (299)
Q Consensus 142 gDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k 221 (299)
|||||+++ +|++|+ ++++|++++|+++++++....+ .+.||.++.||..+.+.+++ +|+++++||||++
T Consensus 256 gDgDR~~~--vd~~G~--~i~~d~l~~l~a~~ll~~~~~~------~~~VV~~v~ss~~~~~~~~~-~g~~v~~t~vG~~ 324 (465)
T PRK14317 256 GDADRVLA--VDGQGR--VVDGDHILYLWGSHLQEQNQLP------DNLLVATVMSNLGFERAWQQ-RGGQLERTAVGDQ 324 (465)
T ss_pred CCCcEEEE--ECCCCC--EEChhHHHHHHHHHHHHhcCCC------CCeEEEeeecchHHHHHHHH-cCCeEEEcCCchH
Confidence 99999988 999994 5999999999999998763111 24677675545555566655 8999999999999
Q ss_pred HHHHHHHhCCcc------------------------------------------cc----------cccccCC-------
Q psy232 222 HLHHEALKYDTI------------------------------------------NA----------DTEIVEP------- 242 (299)
Q Consensus 222 ~i~~~~~~~~~i------------------------------------------~~----------~~~~~~~------- 242 (299)
+++++|.+.+++ +. +..+..+
T Consensus 325 ~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~lsel~~~~~~~~p~~~~~~~~~~~~~~~~~~ 404 (465)
T PRK14317 325 HVHAAMLETGAMLGGEQSGHILCHHHGLSGDGLLTALHLATLVHQSGVSLAELVDQSFQTYPQKLRNVRVEDRDRRLNWQ 404 (465)
T ss_pred HHHHHHHHcCcEeeccccceEEEeccccCCcHHHHHHHHHHHHHHhCCCHHHHHHhHHHhCCceEEEeeccccchhhhhh
Confidence 999999986641 00 0000000
Q ss_pred --hhhhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 243 --LGMQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 243 --~~~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
......++.+.+.+ ++||+|||||||||++|||+||+|++.++++++++.++|++++
T Consensus 405 ~~~~~~~~i~~~~~~~~~~gW~liRpS~TEP~irv~~Ea~~~~~~~~l~~~~~~~v~~~~ 464 (465)
T PRK14317 405 ECEPLQQAIAQAEAAMGDTGRVLVRASGTEPLIRVMVEAEDAELVNHWTNHLVAVVQQHL 464 (465)
T ss_pred cChhHHHHHHHHHHhhcCCceEEEecCCCCCEEEEEEEeCCHHHHHHHHHHHHHHHHHHh
Confidence 11112233333333 5799999999999999999999999999999999999999864
No 10
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.2e-53 Score=410.43 Aligned_cols=266 Identities=21% Similarity=0.231 Sum_probs=209.1
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc-----------------------------ccHHHHHHHHHHHHHHhhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV-----------------------------FEESEYFTHFGNAYLSYQKFL 59 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~-----------------------------~~~~~Y~~~l~~~~~~~~~~i 59 (299)
=||||||||++||||||++++|.++++..+ +..+.|+++|.+.++. .+
T Consensus 97 I~iTaShnp~~~ngiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~id~---~i 173 (450)
T PRK14314 97 VVISASHNPYQDNGIKFFSSDGFKLPDEVELRIEAMVLSKDFDWLLPDAHAVGKAKRIDDAPGRYIVFLKATFPK---GL 173 (450)
T ss_pred EEEEeCCCCcccccEEEECCCCCCCCHHHHHHHHHHHhcCCccccccchhcCceEEEeCchHHHHHHHHHHhhcc---cc
Confidence 499999999999999999999988764311 2345677777766651 12
Q ss_pred hccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEE
Q psy232 60 LTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLS 139 (299)
Q Consensus 60 ~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia 139 (299)
. .+++|||+||+||+++.+++.+|++||| +++.+|+.||| .++++.|++.+|+.+...+.. .+||+|++
T Consensus 174 ~----~~~~kVvvD~~~Ga~~~~~~~il~~lg~--~v~~~~~~~dg-~~~~~~~~~~~~~~l~~~v~~----~~adlGia 242 (450)
T PRK14314 174 T----LKGLKIVLDCANGAAYKVAPAVFEELGA--EVICIGVEPNG-LNINAGCGSLHPEVIAKAVIE----HGADLGIA 242 (450)
T ss_pred C----CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEeccCCCC-CCCCCCCCCCCHHHHHHHHHh----cCCCeEEE
Confidence 1 4689999999999999999999999999 99999999998 667777766666544333333 78999999
Q ss_pred eCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCc
Q psy232 140 VDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTG 219 (299)
Q Consensus 140 ~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G 219 (299)
|||||||+++ +|++| +++++|++++|+++++++....+ ...||.++.||..+.+ +++.+|++|++||||
T Consensus 243 ~DgDgDR~~~--vd~~G--~~i~~d~~~al~~~~ll~~~~~~------~~~vv~~v~ss~~~~~-ia~~~g~~v~~t~vG 311 (450)
T PRK14314 243 LDGDADRLIV--VDEKG--HIVDGDQIMAICATDLKKRGALP------KNTLVATVMSNMGLEV-AMKELGGQVLRTPVG 311 (450)
T ss_pred EcCCCceEEE--ECCCC--cCcCHHHHHHHHHHHHHHhcCCC------CCEEEEeccCChHHHH-HHHHcCCEEEEeCCh
Confidence 9999999998 99999 55999999999999998763111 1357766554555544 454489999999999
Q ss_pred hHHHHHHHHhCCcc---------------------------------c--------c---c-------------ccccCC
Q psy232 220 VKHLHHEALKYDTI---------------------------------N--------A---D-------------TEIVEP 242 (299)
Q Consensus 220 ~k~i~~~~~~~~~i---------------------------------~--------~---~-------------~~~~~~ 242 (299)
+++++++|.+.+++ . + . ......
T Consensus 312 ~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~~Ls~l~~~~~~~p~~~~~~~~~~k~~~~~~ 391 (450)
T PRK14314 312 DRYVVEEMRRGGANLGGEQSGHLIFLDHNTTGDGILSALQVLRIMIESGKPLSELAGLLEPFPQALINVRVKEKIPLETL 391 (450)
T ss_pred HHHHHHHHHhcCCEEEEeCcccEEEeCCCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhhhhcCccceEeEeCCcCccccH
Confidence 99999999976641 0 0 0 000001
Q ss_pred hhhhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 243 LGMQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 243 ~~~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
....+.+||+++.+ ++||+|||||+|||++|||+||+|++.+++|++++.++|++++
T Consensus 392 ~~~~~~i~~v~~~~~~~gWvLiRpS~tEP~iri~~Ea~~~~~a~~l~~~~~~~v~~~~ 449 (450)
T PRK14314 392 PEVAKAIKDVEEALGDSGRVLLRYSGTENLCRVMVEGEDKHQVDSLAKEIADVVEKEL 449 (450)
T ss_pred HHHHHHHHHHHhhhCCCcEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 23456789988877 5899999999999999999999999999999999999998764
No 11
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.6e-53 Score=408.86 Aligned_cols=265 Identities=22% Similarity=0.238 Sum_probs=201.7
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcccc------------------------------cHHHHHHHHHHHHHHhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRVF------------------------------EESEYFTHFGNAYLSYQKF 58 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~------------------------------~~~~Y~~~l~~~~~~~~~~ 58 (299)
=||||||||++||||||++++|.++++..+. ..+.|++++.+.++. .
T Consensus 94 I~ITaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~i~~---~ 170 (446)
T PRK14324 94 IMISASHNPYYDNGIKFFDSYGNKLDEEEEKEIEEIFFDEELIQSSQKTGEEIGSAKRIDDVIGRYIVHIKNSFPK---D 170 (446)
T ss_pred EEEEcCCCChhHCCEEEECCCCCCCCHHHHHHHHHHHhccccccccccchhhCeeeEecccHHHHHHHHHHHhcCC---c
Confidence 4899999999999999999999988654321 223355555444431 1
Q ss_pred hhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEE
Q psy232 59 LLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYL 138 (299)
Q Consensus 59 i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGi 138 (299)
+ ..+++|||+||+||+++.+++.+|++||| +++.+|+.||| .++|+.|++.+|+.+...+.. .+||+|+
T Consensus 171 ~----~~~~lkVvvD~~nGa~~~~~~~ll~~lG~--~v~~i~~~~dg-~~~~~~~~~~~~e~l~~~v~~----~~adlGi 239 (446)
T PRK14324 171 L----TLKGLRIVLDTANGAAYKVAPTVFSELGA--DVIVINDEPNG-FNINENCGALHPENLAQEVKR----YRADIGF 239 (446)
T ss_pred c----CCCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHh----CCCCEEE
Confidence 1 14689999999999999999999999999 99999999998 677888877776655444444 8999999
Q ss_pred EeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecC
Q psy232 139 SVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTST 218 (299)
Q Consensus 139 a~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~ 218 (299)
+|||||||+++ +|++|++ +++|++++|+++++++..+.+ .+.||.++.||..+.+.+++ +|+++++|||
T Consensus 240 a~DgDgDR~~v--vd~~G~~--l~~d~~~~l~a~~ll~~~~~~------~~~VV~~v~ss~~l~~ia~~-~g~~v~~t~v 308 (446)
T PRK14324 240 AFDGDADRLVV--VDEKGEI--VHGDKLLGVLAVYLKEKGALK------SQAIVATVMSNLALEEYLKK-HGIELKRCNV 308 (446)
T ss_pred EECCCCceEEE--ECCCCCE--eCHHHHHHHHHHHHHHhCCCC------CCeEEEEecCChHHHHHHHH-cCCeEEEeCC
Confidence 99999999988 9999954 999999999999998763111 24678776666665555555 9999999999
Q ss_pred chHHHHHHHHhCCcc--------------------------------cccc-------------------cccCChhhhh
Q psy232 219 GVKHLHHEALKYDTI--------------------------------NADT-------------------EIVEPLGMQD 247 (299)
Q Consensus 219 G~k~i~~~~~~~~~i--------------------------------~~~~-------------------~~~~~~~~~~ 247 (299)
|++|++++|.+.+++ ...+ .+..+ ....
T Consensus 309 G~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~ls~l~~~~~~~~~~~~~~~~~~~-~~~~ 387 (446)
T PRK14324 309 GDKYVLECMKENGINFGGEQSGHIIFSDYAKTGDGLVSALQVSALMLESKKKASEALNPFELYPQLLVNLKVQEK-KPLE 387 (446)
T ss_pred hHHHHHHHHHhcCCEEEEcCcccEEecCcCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhhhhcCceeEEEeeCCc-cccc
Confidence 999999999987641 0000 00000 1112
Q ss_pred HHHHhh----hhcCCc-eEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 248 SINKSV----AKFNNA-RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 248 ~iDGik----~~~~~g-w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
.+++++ ...++| |+|||||||||++|||+||+|++.++++++++.++|++.+
T Consensus 388 ~~~~~~~~~~~~~~dg~~~lvR~SgTEp~irv~~Ea~~~~~~~~l~~~~~~~~~~~~ 444 (446)
T PRK14324 388 KIKGLKELLKELEKLGIRHLIRYSGTENKLRILLEGKDEKLLEKKMQELVEFFKKAL 444 (446)
T ss_pred cCHHHHHHHHHHhcCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence 223333 122565 8999999999999999999999999999999999998754
No 12
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-54 Score=414.68 Aligned_cols=263 Identities=24% Similarity=0.289 Sum_probs=206.3
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc---------------------------c-cHHHHHHHHHHHHHHhhhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV---------------------------F-EESEYFTHFGNAYLSYQKFLL 60 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~---------------------------~-~~~~Y~~~l~~~~~~~~~~i~ 60 (299)
=||||||||++|||||||+++|.++++..+ . ..+.|++++.+.++.. +.
T Consensus 99 vmITASHNP~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~i~~~~~~~---~~ 175 (464)
T COG1109 99 VMITASHNPPEYNGIKFFGSDGGKISDDIEEEIEAILAEEVDLPRPSWGELGRLKRIPDALDRYIEFIKSLVDVD---LK 175 (464)
T ss_pred EEEecCCCCchhCcEEEEcCCCCcCChHHHHHHHHHHhccccccccccccCCceeEcchhHHHHHHHHHHhcccc---cc
Confidence 599999999999999999999999876432 1 5677888887777631 11
Q ss_pred ccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc---CCCcEE
Q psy232 61 TDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK---NLNNKY 137 (299)
Q Consensus 61 ~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~---~~adlG 137 (299)
.+++|||+||+||+++.+++++|++||+ +++.+|+.||| .+++.. |.+..+....+... .+||+|
T Consensus 176 ----~~~lkVv~d~~nGaa~~~~~~ll~~lG~--~vv~~~~~pDg-~fp~~~-----p~p~~~~~~~l~~~v~~~~aDlg 243 (464)
T COG1109 176 ----LRGLKVVVDCANGAAGLVAPRLLKELGA--EVVSINCDPDG-LFPNIN-----PNPGETELLDLAKAVKEHGADLG 243 (464)
T ss_pred ----cCCcEEEEECCCCchhHHHHHHHHHcCC--EEEEecCCCCC-CCCCCC-----CCCCCccHHHHHHHHHhcCCCEE
Confidence 4679999999999999999999999999 99999999998 544432 22111111112111 689999
Q ss_pred EEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEec
Q psy232 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTS 217 (299)
Q Consensus 138 ia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~ 217 (299)
+||||||||+++ +|++|+ +++||++++|++.++++.. . . + .||.|++||..+.+.++. +|+++++|+
T Consensus 244 ia~DgDaDR~~~--vd~~G~--~~~Gd~i~~lla~~l~~~~-~-~-----~-~vV~tv~ss~~~~~i~~~-~g~~~~~t~ 310 (464)
T COG1109 244 IAFDGDADRLIV--VDERGN--FVDGDQILALLAKYLLEKG-K-L-----P-TVVTTVMSSLALEKIAKK-LGGKVVRTK 310 (464)
T ss_pred EEecCCCceEEE--EcCCCC--EeCccHHHHHHHHHHHhcC-C-C-----C-eEEEecccchhHHHHHHH-cCCeEEEec
Confidence 999999999988 999995 5999999999999998874 1 1 2 688887777665555555 899999999
Q ss_pred CchHHHHHHHHhCCcc--------------------------------c-cc-----------c----------------
Q psy232 218 TGVKHLHHEALKYDTI--------------------------------N-AD-----------T---------------- 237 (299)
Q Consensus 218 ~G~k~i~~~~~~~~~i--------------------------------~-~~-----------~---------------- 237 (299)
||++|++++|++.+.+ . .+ +
T Consensus 311 vG~~~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~aal~ilel~~~~~~~lsel~~~~~~~~~~~~~~~~~~~~~~~ 390 (464)
T COG1109 311 VGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKYPQSVEINVRVTDEGK 390 (464)
T ss_pred CchHHHHHHHHhcCCeEEEcccCCEEECCCCcCCcHHHHHHHHHHHHHHhCCCHHHHHHhhccccCCcceEeEEEccchh
Confidence 9999999999997641 0 00 0
Q ss_pred -----cccC-Ch--hhhhHHHHhhhhcCCceE-EEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 238 -----EIVE-PL--GMQDSINKSVAKFNNARS-FVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 238 -----~~~~-~~--~~~~~iDGik~~~~~gw~-liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
..++ -. ..+..+||+|+.+++||. |||||||||++|||+|+.+++.++++++++.++|+..|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~idgv~~~~~~g~~~lvRpSGTEP~lrvy~Ea~~~~~~~~~~~~~~~~v~~~~ 461 (464)
T COG1109 391 AEVLEKLLEELREAKKVDTIDGVKVELEDGGRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAELVREAL 461 (464)
T ss_pred hhHHHHHHHhCcccceeeeeeeEEEEeCCCcEEEEEeCCCceEEEEEEEECCHHHHHHHHHHHHHHHHhhh
Confidence 0000 01 145568999999998877 99999999999999999999999999999999998764
No 13
>PLN02895 phosphoacetylglucosamine mutase
Probab=100.00 E-value=7.1e-53 Score=407.29 Aligned_cols=251 Identities=40% Similarity=0.663 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC--CCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEE-EEccccCCCCCCCCCCCCCC
Q psy232 41 ESEYFTHFGNAYLSYQKFLLTDN--KSYSQDIYFDGANGVGGVKIKELQKIIESKLKIE-VYNQDVTTQGKLNFQCGADF 117 (299)
Q Consensus 41 ~~~Y~~~l~~~~~~~~~~i~~~~--~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~-~ln~~~d~~~~~n~~~g~~~ 117 (299)
.+.|++++.+.|..+++...... .....||+|||+||+|+.+++++++.||+ .++ .+|+.|||...+|+.||++|
T Consensus 184 e~~Y~~~l~~~f~~l~~~~~~~~~~~~~~~kvvVDcANGvg~~~~~~l~~~Lg~--~~i~~iN~~~dG~~~lN~~cGad~ 261 (562)
T PLN02895 184 ESDYFEQLSSSFRALLDLIPNGSGDDRADDKLVVDGANGVGAEKLETLKKALGG--LDLEVRNSGKEGEGVLNEGVGADF 261 (562)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccccCCCEEEEECCCcHHHHHHHHHHHHCCC--cEEEEeecCCCCCCCCCCCCccCc
Confidence 57799999999986443321111 12246899999999999999999999999 777 99999998669999999999
Q ss_pred CcccccCCccccccCCCcEE---EEeCCCCCeeEEeeeCCCC---CeeeechHHHHHHHHHHHHHHHhhcC-------CC
Q psy232 118 AKTKKIVPTGVNIKNLNNKY---LSVDGDADRIIYWYPNEDN---TIHLLDGDRIAVLFAMYINELIARCN-------LK 184 (299)
Q Consensus 118 p~~~~~~~~~l~~~~~adlG---ia~DgDgDR~~~~~vd~~G---~~~~l~gd~~~~Lla~~ll~~~~~~~-------~~ 184 (299)
++..+..|+.. ...|+| ++|||||||+++ +|++| .|++++||++++|+|.++.+.....+ ..
T Consensus 262 v~~lq~vp~~~---~~~d~G~~~~sfDGDADRlv~--~d~~g~~~~~~llDGDkI~~L~A~~l~~~l~~~~~~~~~~~~~ 336 (562)
T PLN02895 262 VQKEKVPPTGF---ASKDVGLRCASLDGDADRLVY--FYVSSAGSKIDLLDGDKIASLFALFIKEQLRILNGNGNEKPEE 336 (562)
T ss_pred HHHHHhhhccC---CccCCCCcceEEcCCCCEEEE--EEcCCCcccCeEeCHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 98766444321 123777 999999999999 78777 56789999999999999977631110 01
Q ss_pred cccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHHHHHHHHhCCc-c------------------------------
Q psy232 185 DKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDT-I------------------------------ 233 (299)
Q Consensus 185 ~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~~~-i------------------------------ 233 (299)
.+++.+||+|.++|+++++++++.+|++|++||||+||++++|+++++ +
T Consensus 337 ~~l~~gVVqTayaNgast~yl~~~lg~~v~~t~tGvk~l~~~a~e~digvyfEaNGHGTviFs~~~~~~~~~~~~~~~~~ 416 (562)
T PLN02895 337 LLVRLGVVQTAYANGASTAYLKQVLGLEVVCTPTGVKYLHEAAAEFDIGVYFEANGHGTVLFSERFLDWLEAAAAELSSK 416 (562)
T ss_pred ccCCCeEEEeccccHHHHHHHHHhcCCeEEEEeCchHHHHHHHHhcCceEEEccCCCeEEEEChHHHHHHhhhhhccccc
Confidence 123457999999999999999997899999999999999999999874 1
Q ss_pred -----------------------------------------------------------------c--------cccccc
Q psy232 234 -----------------------------------------------------------------N--------ADTEIV 240 (299)
Q Consensus 234 -----------------------------------------------------------------~--------~~~~~~ 240 (299)
+ .++.++
T Consensus 417 ~~~~~~~~a~~~L~~~~~linq~vGDai~~~L~vl~iL~~~~~sl~e~~~~y~dlP~~~~kv~V~dr~~~~t~~~e~~~v 496 (562)
T PLN02895 417 AKGSEAHKAARRLLAVSRLINQAVGDALSGLLLVEAILQYRGWSLAEWNALYQDLPSRQLKVKVADRTAITTTDAETVVV 496 (562)
T ss_pred cccchhhHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCceeEeeEEccCccccccchhhhcc
Confidence 0 001233
Q ss_pred CChhhhhHHHHhhh-hcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 241 EPLGMQDSINKSVA-KFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 241 ~~~~~~~~iDGik~-~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
+|..+++.|| .++ .+++||+|||||||||+||||+||+|++.++++++++.++|+++|
T Consensus 497 ~P~~Lq~~ID-~~v~~~~~Gr~lvRpSGTEp~vRv~~Ea~t~~~~~~l~~~v~~~v~~~~ 555 (562)
T PLN02895 497 RPAGLQDAID-AEVAKYPRGRAFVRPSGTEDVVRVYAEASTQEAADSLAREVARLVYDLL 555 (562)
T ss_pred cHHHHHHHHH-HHhcccCCceEEEEcCCCCcEEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence 4456788999 666 788999999999999999999999999999999999999998875
No 14
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.3e-53 Score=406.70 Aligned_cols=262 Identities=23% Similarity=0.283 Sum_probs=207.1
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc--------------------------ccHHHHHHHHHHHHHHhhhhhhcc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV--------------------------FEESEYFTHFGNAYLSYQKFLLTD 62 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~--------------------------~~~~~Y~~~l~~~~~~~~~~i~~~ 62 (299)
=||||||||++||||||++++|.++++..+ +..+.|++++.+.++. +.
T Consensus 96 I~ITaSHNp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~~~~----~~-- 169 (443)
T PRK14320 96 FVITASHNKFTDNGIKLFSSNGFKLDDALEEEVEDMIDGDFIYQPQFKFGSYKILANAIDEYIESIHSRFAK----FV-- 169 (443)
T ss_pred EEEEeCCCchHHCeEEEECCCCCcCCHHHHHHHHHHHhccccccccccCcceEeccchHHHHHHHHHHHHHh----hc--
Confidence 499999999999999999999987754311 2345677777665541 11
Q ss_pred CCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeCC
Q psy232 63 NKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDG 142 (299)
Q Consensus 63 ~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~Dg 142 (299)
..++||++||+||+++.+++.+|++||| +++.+|+.||| .++|+.|++.+.+.+...+.. .+||+|++|||
T Consensus 170 --~~~~kVvvD~~nG~~~~~~~~ll~~lg~--~v~~i~~~~dg-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~Dg 240 (443)
T PRK14320 170 --NYKGKVVVDCAHGAASHNFEALLDKFGI--NYVSIASNPDG-LNINVGCGATCVSNIKKAVKE----QKADLGISLDG 240 (443)
T ss_pred --cCCCEEEEECCCchHHHHHHHHHHHcCC--cEEEECCcCCC-CCCCCCCchHhHHHHHHHHHH----cCCCEEEEECC
Confidence 2357999999999999999999999999 99999999998 666666654433333333333 78999999999
Q ss_pred CCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHH
Q psy232 143 DADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKH 222 (299)
Q Consensus 143 DgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~ 222 (299)
||||+++ +|++| ++++||++++|+++++++.. . .+++|.+++||+.+.+.+++ +|+++++||||+++
T Consensus 241 DaDR~~~--vd~~G--~~l~gd~~~al~a~~l~~~~---~-----~~~vV~~~~~s~~~~~~~~~-~g~~~~~t~vG~~~ 307 (443)
T PRK14320 241 DADRIII--VDENG--QEIDGDGILNILAQYSDICG---G-----TNGIVGTQMTNMSYENHYRA-NKIPFIRSKVGDRY 307 (443)
T ss_pred CCceEEE--ECCCC--cccCHHHHHHHHHHHHHHhC---C-----CCCEEEecCCcHHHHHHHHH-CCCCEEEecCchHH
Confidence 9999999 99999 55999999999999986542 1 24789899999977777666 89999999999999
Q ss_pred HHHHHHhCCcc---------------------------------ccc---------------c---ccc-----C-Chhh
Q psy232 223 LHHEALKYDTI---------------------------------NAD---------------T---EIV-----E-PLGM 245 (299)
Q Consensus 223 i~~~~~~~~~i---------------------------------~~~---------------~---~~~-----~-~~~~ 245 (299)
++++|.+.+++ ..+ + .+- + ....
T Consensus 308 i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~~~lle~la~~~~~ls~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (443)
T PRK14320 308 VLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSEFKLQGELMQQTLINVPLTKKVAREDLQKV 387 (443)
T ss_pred HHHHHHhCCCcEeecCCccEEccCCCCcCCHHHHHHHHHHHHHHcCCCHHHHhcccccCceEEEEEEecCCCCcchhHHH
Confidence 99999976630 000 0 000 0 1223
Q ss_pred hhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhh
Q psy232 246 QDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 246 ~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
.+.+|++++.+ ++||+|||||||||++|||+||+|+++++++++.+.++|++-
T Consensus 388 ~~~~~~~~~~~~~~gW~LiRpS~teP~~rv~~Ea~s~e~a~~l~~~~~~~i~~~ 441 (443)
T PRK14320 388 ASDVNDVEKRLGNRGRVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQK 441 (443)
T ss_pred HHHHHHHHhhhCCCceEEEecCCCCceEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 45688888877 689999999999999999999999999999999999999764
No 15
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=9.2e-53 Score=403.43 Aligned_cols=252 Identities=19% Similarity=0.235 Sum_probs=198.9
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcccc----------------------------cHHHHHHHHHHHHHHhhhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRVF----------------------------EESEYFTHFGNAYLSYQKFLL 60 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~----------------------------~~~~Y~~~l~~~~~~~~~~i~ 60 (299)
=||||||||++||||||++++|.++++..+. ..+.|++.+.+.++
T Consensus 97 I~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~~~------- 169 (440)
T PRK14323 97 VVISASHNPYQDNGIKFFGADGEKLPDAAELEIEALLDEVPELAEVTGAGIGSVSDFTEAERLYLDFLLSHAP------- 169 (440)
T ss_pred EEEecCCCCCccCCEEEeCCCCCcCCHHHHHHHHHHHhcccccCcccccCceeEEEhhhHHHHHHHHHHHhcc-------
Confidence 3899999999999999999999988754321 12233333333221
Q ss_pred ccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEe
Q psy232 61 TDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSV 140 (299)
Q Consensus 61 ~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~ 140 (299)
..+++|||+||+||+++.+++.+|++||| +++.+|+.||+ .++|+.|++.++..++..+.. .+||+|++|
T Consensus 170 ---~~~~~kVvvD~~~G~~~~~~~~ll~~lG~--~v~~l~~~~dg-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~ 239 (440)
T PRK14323 170 ---DLSGLKVALDCANGAAYRLAPKVFQAAGA--DVFALFNTPDG-RNINRGCGSTHPEALQRFVVE----GGLDLGVAF 239 (440)
T ss_pred ---cccCCEEEEECCCchHHHHHHHHHHHcCC--cEEEEeccCCC-CcCCCCCCCCCHHHHHHHHhc----cCCCEEEEe
Confidence 13689999999999999999999999999 99999999998 677887776666655555555 899999999
Q ss_pred CCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCch
Q psy232 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGV 220 (299)
Q Consensus 141 DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~ 220 (299)
||||||+++ +|++| +++++|++++|++.+. . ..+||.++.||..+.+.+++ +|+++++||||+
T Consensus 240 DgD~DR~~~--vD~~G--~~i~~d~~~~l~a~~~---~---------~~~vV~~v~ss~~~~~~~~~-~g~~v~~t~vG~ 302 (440)
T PRK14323 240 DGDADRALF--VDRRG--RLFHGDHMLYLNALAR---G---------EKAVVGTVMSNMALEVKLRE-AGIAFHRTAVGD 302 (440)
T ss_pred CCCcceeEE--ECCCC--cEeCHHHHHHHHHHHh---c---------CCcEEEEeCCChHHHHHHHH-cCCeEEEeCChH
Confidence 999999999 99999 4599999999999652 1 13688787777777666666 899999999999
Q ss_pred HHHHHHHHhCCcc--------------------------------c-------------------------ccccccCCh
Q psy232 221 KHLHHEALKYDTI--------------------------------N-------------------------ADTEIVEPL 243 (299)
Q Consensus 221 k~i~~~~~~~~~i--------------------------------~-------------------------~~~~~~~~~ 243 (299)
++++++|.+.+++ . .+..++..
T Consensus 303 ~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~le~la~~~~~ls~l~~~~~~~~~~~~~v~~~~k~~~~~~- 381 (440)
T PRK14323 303 RYVHEKLHAKGLTLGGEQSGHVLFLDHAPTGDGVLTALLTLAAMKALGTDLDAWYDALPMYPQTLLNVRVSDKAKVAAD- 381 (440)
T ss_pred HHHHHHHHhcCCeEEEcCcccEEeCCCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHhhhhcCceeEEEEeCCccchhcC-
Confidence 9999999987641 0 00011111
Q ss_pred hhhhHHHHhh---hhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 244 GMQDSINKSV---AKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 244 ~~~~~iDGik---~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
.+..+|++ +.+ ++||+|||||||||++|||+||+|++.+++|++++.++|++
T Consensus 382 --~~~~~~i~~~~~~~~~~gW~LvRpS~TEP~irv~~Ea~s~~~~~~l~~~~~~~v~~ 437 (440)
T PRK14323 382 --PRVQEAVREAEARLGGRGRVNLRPSGTEPLVRVMVEGPDEAEIEEVARELAGVVER 437 (440)
T ss_pred --HHHHHHHHHHHhhcCCCeEEEEecCCCccEeEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 23345555 655 57999999999999999999999999999999999999975
No 16
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=2.6e-53 Score=407.49 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=198.3
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc-------------------------cccHHHHHHHHHHHHHHhhhhhhccC
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR-------------------------VFEESEYFTHFGNAYLSYQKFLLTDN 63 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~-------------------------~~~~~~Y~~~l~~~~~~~~~~i~~~~ 63 (299)
=||||||||++|||+||+...|..+++.. .+..+.|++++.+.++ +..
T Consensus 89 i~iTaSHNP~~~nG~Ki~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~~~~~~~~~~Y~~~l~~~i~--~~~----- 161 (445)
T PRK09542 89 AMFTASHNPAAYNGIKLCRAGAKPVGQDTGLAAIRDDLIAGVPAYDGPPGTVTERDVLADYAAFLRSLVD--LSG----- 161 (445)
T ss_pred EEEcCCCCCCccCcEEEecCCCcccCchhHHHHHHHHHhcccccccCCCCceeccChHHHHHHHHHHhcc--ccc-----
Confidence 49999999999999999877776443321 1345668888877766 222
Q ss_pred CCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCcEE
Q psy232 64 KSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNNKY 137 (299)
Q Consensus 64 ~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~adlG 137 (299)
.+++||++||+||+++.+++.+|+.||| +++.+|+.||+ .+++ ..|++.. ++++..+ .+||+|
T Consensus 162 -i~~lkVvvd~~~Ga~~~~~~~ll~~lg~--~vv~~~~~~d~-~Fp~-----~~p~P~~--~~~l~~l~~~v~~~~adlG 230 (445)
T PRK09542 162 -IRPLKVAVDAGNGMGGHTVPAVLGGLPI--TLLPLYFELDG-TFPN-----HEANPLD--PANLVDLQAFVRETGADIG 230 (445)
T ss_pred -CCCCEEEEECCCCchhHHHHHHHHhCCC--EEEEEecCcCC-CCCC-----CCcCCCC--HHHHHHHHHHHHHcCCCEE
Confidence 2589999999999999999999999999 99999999998 4333 2332211 2233222 789999
Q ss_pred EEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEec
Q psy232 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTS 217 (299)
Q Consensus 138 ia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~ 217 (299)
++|||||||+++ +|++|++ +++|++++|+++++++.. ++ +.||.++.||.. .+.+++.+|+++++|+
T Consensus 231 ia~DgD~DR~~i--vd~~G~~--l~~d~~~~l~~~~~l~~~--~~------~~vv~~v~ss~~-~~~~a~~~g~~~~~t~ 297 (445)
T PRK09542 231 LAFDGDADRCFV--VDERGQP--VSPSAVTALVAARELARE--PG------ATIIHNLITSRA-VPELVAERGGTPVRTR 297 (445)
T ss_pred EEECCCCceEEE--ECCCCCC--ccHHHHHHHHHHHHHHHC--CC------CeEEEeeccchh-HHHHHHHcCCeEEEec
Confidence 999999999988 9999966 999999999999988763 22 467766555555 4555555999999999
Q ss_pred CchHHHHHHHHhCCcc---------------------------------c-------------------------cc---
Q psy232 218 TGVKHLHHEALKYDTI---------------------------------N-------------------------AD--- 236 (299)
Q Consensus 218 ~G~k~i~~~~~~~~~i---------------------------------~-------------------------~~--- 236 (299)
||++|++++|.+.+++ . .+
T Consensus 298 vG~~~i~~~m~~~~~~~ggE~sgg~~f~~~~~~~Dgi~a~~~lle~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (445)
T PRK09542 298 VGHSFIKALMAETGAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGEQDRPLSELMADYQRYAASGEINSTVADAPAR 377 (445)
T ss_pred CcHHHHHHHHHHhCCcEEEeeeccEEecCcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHhhhhcCcccceeecCCCHHHH
Confidence 9999999999976531 0 00
Q ss_pred -ccccC--Chh--hhhHHHHhhhhcCC-ceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 237 -TEIVE--PLG--MQDSINKSVAKFNN-ARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 237 -~~~~~--~~~--~~~~iDGik~~~~~-gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
+++++ ... .++.+||+|+.+++ +|+|||||||||++|||+||+|+++++++++++.++|+.
T Consensus 378 ~~~l~~~~~~~~~~~~~~DGvki~~~dg~WvliRpSgTEP~lriy~Ea~~~e~~~~l~~~~~~~v~~ 444 (445)
T PRK09542 378 MEAVLKAFADRIVSVDHLDGVTVDLGDGSWFNLRASNTEPLLRLNVEARTEEEVDALVDEVLAIIRA 444 (445)
T ss_pred HHHHHHHhhhccCCceecceEEEEecCCcEEEEEecCCCcEEEEEEEeCCHHHHHHHHHHHHHHhhc
Confidence 00100 001 35668999999865 599999999999999999999999999999999998864
No 17
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.1e-53 Score=408.35 Aligned_cols=255 Identities=20% Similarity=0.225 Sum_probs=200.2
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc---------------------------cccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR---------------------------VFEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~---------------------------~~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++.+.. .+..+.|++++.+.++ ++.++
T Consensus 92 I~ITaShnp~~~nGiK~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~~~--~~~~~- 168 (445)
T cd05803 92 IIITASHNPPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAGSAQKAGYDQLGEVTFSEDAIAEHIDKVLALVD--VDVIK- 168 (445)
T ss_pred EEEEecCCCcccccEEEECCCCCcCCHHHHHHHHHHHhcccccccccccCcceeccCchHHHHHHHHHhhcc--cchhh-
Confidence 38999999999999999999999886432 1334668887777665 22211
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCc
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNN 135 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~ad 135 (299)
...+++||++||+||+++.+++++|++||| +++.+|+.||| .||..+.|.|+++..+ .+||
T Consensus 169 -~~~~~lkVvvd~~~G~~~~~~~~ll~~lg~--~v~~~~~~~d~----------~F~~~p~p~~~~l~~l~~~v~~~~ad 235 (445)
T cd05803 169 -IRERNFKVAVDSVNGAGGLLIPRLLEKLGC--EVIVLNCEPTG----------LFPHTPEPLPENLTQLCAAVKESGAD 235 (445)
T ss_pred -hccCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEeCCcCCC----------CCCCCCCCChHHHHHHHHHHHhcCCC
Confidence 013689999999999999999999999999 99999999997 2332334445554443 7899
Q ss_pred EEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEE
Q psy232 136 KYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIF 215 (299)
Q Consensus 136 lGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~ 215 (299)
+|++|||||||+++ +|++|++ +++|++++|+++++++...+ ++.||.+ ++++.+.+.+++.+|+++++
T Consensus 236 lgi~~D~DgDR~~i--vd~~G~~--i~~d~~~al~a~~ll~~~~~-------~~~vv~~-v~ss~~i~~ia~~~g~~v~~ 303 (445)
T cd05803 236 VGFAVDPDADRLAL--VDEDGRP--IGEEYTLALAVDYVLKYGGR-------KGPVVVN-LSTSRALEDIARKHGVPVFR 303 (445)
T ss_pred EEEeeCCCCceEEE--ECCCCCC--cChHHHHHHHHHHHHHhcCC-------CCCEEEe-ccchHHHHHHHHHcCCEEEE
Confidence 99999999999999 9999965 99999999999999885311 2457755 66666677777779999999
Q ss_pred ecCchHHHHHHHHhCCcc-----------------------------------------------------------ccc
Q psy232 216 TSTGVKHLHHEALKYDTI-----------------------------------------------------------NAD 236 (299)
Q Consensus 216 t~~G~k~i~~~~~~~~~i-----------------------------------------------------------~~~ 236 (299)
|+||++|++++|.+.+++ +.+
T Consensus 304 t~vG~~~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~~L~~l~~~~~~~~~~~~~v~~~~~~~ 383 (445)
T cd05803 304 SAVGEANVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPLSEIVDELPQYYISKTKVTIAGEAL 383 (445)
T ss_pred ecccHHHHHHHHHhcCCeEEEeccCCeecCCccccccHHHHHHHHHHHHHhcCCCHHHHHHhchhhheeeeeeeccHHhH
Confidence 999999999999875430 000
Q ss_pred cccc----C--ChhhhhHHHHhhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHH
Q psy232 237 TEIV----E--PLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEI 291 (299)
Q Consensus 237 ~~~~----~--~~~~~~~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~ 291 (299)
.+++ + +...++.+||+|+.+++||+|||||||||++|||+||+|++.+++|++++
T Consensus 384 ~~i~~~l~~~~~~~~v~~~DGik~~~~~~W~liRpS~teP~~riy~Ea~s~e~a~~l~~~~ 444 (445)
T cd05803 384 ERLLKKLEAYFKDAEASTLDGLRLDSEDSWVHVRPSNTEPIVRIIAEAPTQDEAEALADRF 444 (445)
T ss_pred HHHHHHHHHhcccCCcccCceEEEecCCeEEEEeccCCccEEEEEEecCCHHHHHHHHHhh
Confidence 0111 1 12245679999999999999999999999999999999999999999875
No 18
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.4e-52 Score=402.85 Aligned_cols=264 Identities=21% Similarity=0.234 Sum_probs=204.4
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc---------------------------ccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV---------------------------FEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~---------------------------~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++++..+ +..+.|++++.+.++. .
T Consensus 99 I~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~i~~---~--- 172 (448)
T PRK14318 99 VMISASHNPMPDNGIKFFAAGGHKLPDDVEDRIEAVLGQLPWLRPTGAGVGRVIDAPDATDRYLRHLLGALPT---R--- 172 (448)
T ss_pred EEEEcCCCCcccCCEEEEcCCCCcCCHHHHHHHHHHHhccCccccccccCceEEECCcHHHHHHHHHHHHhcc---c---
Confidence 499999999999999999999998875311 2346687777776651 1
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeC
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVD 141 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~D 141 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.||+ .++|+.|++.++..+...+.. .+||+|++||
T Consensus 173 ---~~~~kVvvD~~nG~~~~~~~~ll~~lG~--~v~~in~~~dg-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~D 242 (448)
T PRK14318 173 ---LDGLKVVVDCAHGAASGVAPEAYRAAGA--DVIAINADPDG-LNINDGCGSTHLEQLQAAVVA----HGADLGLAHD 242 (448)
T ss_pred ---cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEeccCCCC-CCCCCCCCCCCHHHHHHHHHh----cCCCEEEEec
Confidence 3689999999999999999999999999 99999999998 666766665554444433433 7899999999
Q ss_pred CCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchH
Q psy232 142 GDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVK 221 (299)
Q Consensus 142 gDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k 221 (299)
|||||+++ +|++|+ ++++|++++|++.++++.. +. .++.||.++.||..+.+.+++ +|+++++||||++
T Consensus 243 gD~DR~~~--vd~~G~--~l~~d~~~~l~a~~l~~~~--~~----~~~~vV~~v~ss~~~~~~~~~-~g~~v~~t~vG~~ 311 (448)
T PRK14318 243 GDADRCLA--VDANGN--VVDGDQIMAILALAMKEAG--EL----ASDTLVATVMSNLGLKLAMRE-AGITVVTTAVGDR 311 (448)
T ss_pred CCCceEEE--ECCCCc--EeCHHHHHHHHHHHHHHhc--CC----CCCcEEEEecCchHHHHHHHH-cCCcEEEeCChHH
Confidence 99999988 999995 5999999999998887642 10 024677665555555555555 8999999999999
Q ss_pred HHHHHHHhCCcc---------------------------------cccc--ccc---------------CCh----hhhh
Q psy232 222 HLHHEALKYDTI---------------------------------NADT--EIV---------------EPL----GMQD 247 (299)
Q Consensus 222 ~i~~~~~~~~~i---------------------------------~~~~--~~~---------------~~~----~~~~ 247 (299)
+++++|.+.+++ ..+. .++ ..+ ...+
T Consensus 312 ~i~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~~ls~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 391 (448)
T PRK14318 312 YVLEEMRAGGYSLGGEQSGHIVMPDHATTGDGILTGLRLMARMAQTGKSLAELASAMTVLPQVLINVPVVDKTTAATAPS 391 (448)
T ss_pred HHHHHHHhcCcEEEEcCcCcEEecCCCCCCCHHHHHHHHHHHHHHhCCCHHHHHhhhhhcCcceeeeecCCccchhccHH
Confidence 999999876530 0000 000 000 1133
Q ss_pred HHHHhhh---hc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 248 SINKSVA---KF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 248 ~iDGik~---~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
..+|++. .+ ++||+|||||||||++|||+||+|++.+++|++++.++|++.+
T Consensus 392 ~~~~i~~~~~~~~~~gw~lvRpS~teP~irv~~Ea~~~~~a~~l~~~~~~~v~~~~ 447 (448)
T PRK14318 392 VRAAVARAEAELGDTGRVLLRPSGTEPLVRVMVEAADEETARRVAGRLADVVAEAL 447 (448)
T ss_pred HHHHHHHHHhhhcCCeEEEEeeCCCCcEEEEEEeECCHHHHHHHHHHHHHHHHHhc
Confidence 4567665 55 5899999999999999999999999999999999999998753
No 19
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.3e-52 Score=401.21 Aligned_cols=257 Identities=25% Similarity=0.286 Sum_probs=202.6
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc-------------------------ccHHHHHHHHHHHHHHhhhhhhccC
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV-------------------------FEESEYFTHFGNAYLSYQKFLLTDN 63 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~-------------------------~~~~~Y~~~l~~~~~~~~~~i~~~~ 63 (299)
=||||||||++||||||+. +|.+++...+ +..+.|++++.+.++. +.
T Consensus 88 i~ItaSHnp~~~ngiK~~~-~G~~i~~~~~~~ie~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~~~~----~~--- 159 (430)
T PRK14319 88 VMISASHNPPEYNGLKVLM-RGYKLPDEVEERIEKEMNEIHYSPYNEVGCVIDYKLAFEEYFNYIKQQYEG----LD--- 159 (430)
T ss_pred EEEEeCCCChHHCCEEEec-CCCCCCHHHHHHHHHHHhccCCcccccCeeEEeccchHHHHHHHHHHhcCc----cc---
Confidence 4899999999999999995 8888775411 2346677777776641 11
Q ss_pred CCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeCCC
Q psy232 64 KSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGD 143 (299)
Q Consensus 64 ~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~DgD 143 (299)
.+++|||+||+||+++.++|.+|++||| +++.+|+.||| .++|+.|++.+|+.+...+ .++|+|++||||
T Consensus 160 -~~~~kvvvD~~nGa~~~~~~~ll~~Lg~--~v~~ln~~~dg-~~~~~~~~~~~~~~l~~~v------~~~dlGia~DgD 229 (430)
T PRK14319 160 -LSGIKIVVDVANGATYELNPYILEYFGA--KVEVVNNTPDG-FNINVDCGSTHPENAKEKI------TNHKIAILHDGD 229 (430)
T ss_pred -cCCCEEEEECCCChHHHHHHHHHHHcCC--EEEEECCCCCC-CCCCCCCCCCCHHHHHHHH------HhcCEEEEEcCC
Confidence 3689999999999999999999999999 99999999998 7788888877665433222 456999999999
Q ss_pred CCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHHH
Q psy232 144 ADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHL 223 (299)
Q Consensus 144 gDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~i 223 (299)
|||+++ +|++|+ ++++|++++|+++++++.. +.. ++.||+++.||..+.+.+++ +|++++|||||++++
T Consensus 230 aDR~~~--vd~~G~--~i~~d~~~~l~a~~ll~~~-~~~-----~~~vV~~v~ss~~~~~~~~~-~g~~v~~t~~G~~~i 298 (430)
T PRK14319 230 GDRCIF--LDEKGQ--EFHGDKIIGLTAKHLKKEG-RLK-----NDVVVGTILSNMGLEVFLKN-NGIKVVRTKVGDRYV 298 (430)
T ss_pred CceEEE--ECCCCC--EeChhHHHHHHHHHHHHhC-CCC-----CCeEEEeecCchHHHHHHHH-CCCcEEEeCCchHHH
Confidence 999998 999994 5999999999999998753 101 24588887777777777766 899999999999999
Q ss_pred HHHHHhCCcc--------------------------------ccc------------------------ccccCChhhhh
Q psy232 224 HHEALKYDTI--------------------------------NAD------------------------TEIVEPLGMQD 247 (299)
Q Consensus 224 ~~~~~~~~~i--------------------------------~~~------------------------~~~~~~~~~~~ 247 (299)
+++|.+.+++ ... +.+.+.....+
T Consensus 299 ~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~l~~~~~~ls~l~~~~p~~~~~~~~v~~k~~~~~~~~~~~~ 378 (430)
T PRK14319 299 LEEMLKLNATLGGERSGHIIYLDKSTTGDGLITALETLSVMVKSGKKLSDLSNEIPDYPQVMINVKVKNKEVYKHKEVFK 378 (430)
T ss_pred HHHHHHcCCEEEEcccceEEEhhccCCCcHHHHHHHHHHHHHHhCCCHHHHHhhccccceeeEEEEeCCccccccHHHHH
Confidence 9999987641 000 00000012233
Q ss_pred HHHHhhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhh
Q psy232 248 SINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 248 ~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
.+|| +++||+|||||||||++|||+||+|++.++++++.+.++|+++
T Consensus 379 ~~~~----~~~gw~LiRpS~TeP~irv~~Ea~~~~~a~~l~~~~~~~v~~~ 425 (430)
T PRK14319 379 LIKS----IKDYRVIVRPSGTEPVVRVLVEGPDEEYITNIANDIAGLIKEL 425 (430)
T ss_pred HHhC----CCCeEEEEecCCCccEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 3444 3579999999999999999999999999999999999999875
No 20
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=5.2e-53 Score=406.38 Aligned_cols=259 Identities=17% Similarity=0.171 Sum_probs=200.5
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc---------------------------cccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR---------------------------VFEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~---------------------------~~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++|||+|+++++|.++++.. .+..+.|++++.+.++ .+.
T Consensus 93 I~ITaSHNP~~~NG~Ki~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~Yi~~l~~~id--~~~--- 167 (456)
T PRK15414 93 IEVTASHNPMDYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYIN--VKN--- 167 (456)
T ss_pred EEEecCCCCCCCCCEEeecCCCcccCcHHHHHHHHHHHhcCCcccccccCCCcEEecCcHHHHHHHHHHhcc--ccc---
Confidence 48999999999999999998876443321 1345778888877765 222
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHH---HHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------C
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKEL---QKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------N 132 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~l---l~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~ 132 (299)
.+++|||+||+||+++.+++.+ |++|||.++++.+|+.||| .+++ ..|++.. ++++..+ .
T Consensus 168 ---~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg-~F~~-----~~p~P~~--~~~l~~l~~~v~~~ 236 (456)
T PRK15414 168 ---LTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDG-NFPN-----GIPNPLL--PECRDDTRNAVIKH 236 (456)
T ss_pred ---CCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCC-CCCC-----CCCCCCC--HHHHHHHHHHHHHc
Confidence 2589999999999999999999 9999995466788999997 3333 2333221 2232222 7
Q ss_pred CCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCe
Q psy232 133 LNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNID 212 (299)
Q Consensus 133 ~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~ 212 (299)
+||+|++|||||||+++ +|++|++ ++||++++|+++++++.. ++ ..+|.++++|+.+.+.+++ +|++
T Consensus 237 ~adlGia~DgDaDR~~~--vde~G~~--l~~d~~~~l~a~~ll~~~--~g------~~vv~~~~~s~~l~~~~~~-~g~~ 303 (456)
T PRK15414 237 GADMGIAFDGDFDRCFL--FDEKGQF--IEGYYIVGLLAEAFLEKN--PG------AKIIHDPRLSWNTVDVVTA-AGGT 303 (456)
T ss_pred CCCEEEEECCCcceEEE--ECCCCCE--ecHHHHHHHHHHHHHHhC--CC------CeeccCchhhhHHHHHHHH-cCCE
Confidence 89999999999999998 9999966 999999999999998753 22 3588778888877776666 8999
Q ss_pred EEEecCchHHHHHHHHhCCcc------------------------------------------c-------cc-c---cc
Q psy232 213 VIFTSTGVKHLHHEALKYDTI------------------------------------------N-------AD-T---EI 239 (299)
Q Consensus 213 v~~t~~G~k~i~~~~~~~~~i------------------------------------------~-------~~-~---~~ 239 (299)
+++|+||++|++++|.+.+++ + .. + .+
T Consensus 304 ~~~t~vG~~~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ile~la~~~~~L~~l~~~~~~~~~~~~~~~~~~ 383 (456)
T PRK15414 304 PVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGKTLGELVRDRMAAFPASGEINSKL 383 (456)
T ss_pred EEEecCcHHHHHHHHHhcCCeEEEcccceEEeCCCCCCccHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCCCccccCC
Confidence 999999999999999986640 0 00 0 00
Q ss_pred cCC--------------hhhhhHHHHhhhhcCCceEEEecCCCcceEEEEEEeC-CHHHHHHHHHHHHHHHH
Q psy232 240 VEP--------------LGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAE-TSEDVNALTEEIQQVVK 296 (299)
Q Consensus 240 ~~~--------------~~~~~~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~-~~~~~~~l~~~~~~~v~ 296 (299)
-++ ...++.+||+|+.+++||++||||||||++|||+||. +++.++++++.+.++|.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~DGvki~~~~~~lllRpSgTEP~iri~~Ea~~~~~~~~~~~~~~~~~~~ 455 (456)
T PRK15414 384 AQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTLLTLLN 455 (456)
T ss_pred CCHHHHHHHHHHHhccccCcEEecceeEEEeCCceEEEecCCCceEEEEEEecCCCHHHHHHHHHHHHHHhh
Confidence 010 1135678999999877778999999999999999998 89999999999888775
No 21
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.6e-52 Score=398.76 Aligned_cols=264 Identities=20% Similarity=0.217 Sum_probs=199.1
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc--------------------------ccHHHHHHHHHHHHHHhhhhhhcc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV--------------------------FEESEYFTHFGNAYLSYQKFLLTD 62 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~--------------------------~~~~~Y~~~l~~~~~~~~~~i~~~ 62 (299)
=||||||||++||||||++++|.++++..+ +..+.|++++.+.++. .+.
T Consensus 94 I~ITaShnp~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~id~---~i~-- 168 (443)
T PRK10887 94 IVISASHNPYYDNGIKFFSADGTKLPDEVELAIEAELDKPLTCVESAELGKASRINDAAGRYIEFCKSTFPN---ELS-- 168 (443)
T ss_pred EEEecCCCCcccCeEEEECCCCCCCCHHHHHHHHHHHhCcCCccccccCceEEEcCChHHHHHHHHHHhcCc---ccc--
Confidence 489999999999999999999988764311 2356677777776651 122
Q ss_pred CCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeCC
Q psy232 63 NKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDG 142 (299)
Q Consensus 63 ~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~Dg 142 (299)
.+++|||+||+||+++.+++.+|++||| +++.+|+.||+ .++++.+++.++..+...+.. .+||+|++|||
T Consensus 169 --~~~~kVvvD~~~G~~~~~~~~ll~~lG~--~v~~~n~~~dg-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~D~ 239 (443)
T PRK10887 169 --LRGLKIVVDCANGATYHIAPNVFRELGA--EVIAIGCEPNG-LNINDECGATDPEALQAAVLA----EKADLGIAFDG 239 (443)
T ss_pred --cCCCEEEEECCCchHHHHHHHHHHHhCC--eEEEEeccCCC-CCCCCCCCCCCHHHHHHHHHh----cCCCeeeEECC
Confidence 4689999999999999999999999999 99999999998 444443333322222222222 88999999999
Q ss_pred CCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHH
Q psy232 143 DADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKH 222 (299)
Q Consensus 143 DgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~ 222 (299)
||||+++ +|++|+ ++++|++++|++.++++.. + .+++||.++.||..+.+.++ .+|+++++||||+++
T Consensus 240 DgDRl~~--vd~~G~--~i~~d~l~~l~~~~ll~~~--~-----~~~~vv~~v~ss~~~~~~a~-~~g~~v~~t~vG~~~ 307 (443)
T PRK10887 240 DGDRVIM--VDHLGN--LVDGDQLLYIIARDRLRRG--Q-----LRGGVVGTLMSNMGLELALK-QLGIPFVRAKVGDRY 307 (443)
T ss_pred CCceEEE--ECCCCc--EeCHHHHHHHHHHHHHHhC--C-----CCCcEEEEeccchHHHHHHH-HcCCcEEEcCCchHH
Confidence 9999988 999995 5999999999999998763 1 12468866555555555544 499999999999999
Q ss_pred HHHHHHhCCcc--------------------------------cc-c----------------ccccCC---------hh
Q psy232 223 LHHEALKYDTI--------------------------------NA-D----------------TEIVEP---------LG 244 (299)
Q Consensus 223 i~~~~~~~~~i--------------------------------~~-~----------------~~~~~~---------~~ 244 (299)
++++|.+.+++ .. + ..+-.+ ..
T Consensus 308 i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~Ls~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 387 (443)
T PRK10887 308 VLEKLQEKGWRLGGENSGHILCLDKTTTGDGIVAALQVLAAMVRSGMSLADLCSGMKLFPQVLINVRFKPGADDPLESEA 387 (443)
T ss_pred HHHHHHhcCcEEEEecccceeccCccccCcHHHHHHHHHHHHHHhCCCHHHHHhhcccccceEEEEEeccccccccchHH
Confidence 99999986640 00 0 000001 11
Q ss_pred hhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhh
Q psy232 245 MQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 245 ~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
....+++....+ ++||+|||||+|||++|||+||+|++.+++|++++.++|++.
T Consensus 388 ~~~~~~~~~~~~~~dgWvLiRpS~tEP~iri~~Ea~s~e~a~~l~~~~~~~v~~~ 442 (443)
T PRK10887 388 VKAALAEVEAELGGRGRVLLRKSGTEPLIRVMVEGEDEAQVTALAERIADAVKAA 442 (443)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCeEEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 222344444444 579999999999999999999999999999999999999764
No 22
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=1e-51 Score=396.55 Aligned_cols=263 Identities=21% Similarity=0.257 Sum_probs=197.6
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc----------------------------cccHHHHHHHHHHHHHHhhhhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR----------------------------VFEESEYFTHFGNAYLSYQKFLL 60 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~----------------------------~~~~~~Y~~~l~~~~~~~~~~i~ 60 (299)
=||||||||++||||||++++|.++++.. .+..+.|++++.+.++. .++
T Consensus 93 I~iTaSHnP~~~nGiK~~~~~G~~i~~~~~~~I~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~i~~---~~~ 169 (443)
T TIGR01455 93 VMISASHNPYEDNGIKFFGPGGFKLDDATEAAIEALLDEADPLPRPESEGLGRVKRYPDAVGRYIEFLKSTLPR---GLT 169 (443)
T ss_pred EEEecCCCCcccCcEEEecCCCCcCCHHHHHHHHHHHhcCccccCCCccCceEEEEcccHHHHHHHHHHHHhhc---ccc
Confidence 48999999999999999999998876421 02346688888777662 122
Q ss_pred ccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEe
Q psy232 61 TDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSV 140 (299)
Q Consensus 61 ~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~ 140 (299)
.+++|||+|++||+++.+++.+|++||| +++.+|+.+|+ .++++.+++.++..+...+.. .+||+|++|
T Consensus 170 ----~~~lkVvvD~~~G~~~~~~~~ll~~lg~--~v~~in~~~d~-~~~~~~~~~~~l~~l~~~v~~----~~adlGia~ 238 (443)
T TIGR01455 170 ----LSGLKVVLDCANGAAYKVAPHVFRELGA--EVIAIGVEPDG-LNINDGCGSTHLDALQKAVRE----HGADLGIAF 238 (443)
T ss_pred ----cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEccCCCC-CCCCCCCCCCCHHHHHHHHhh----cCCCEEEEE
Confidence 4689999999999999999999999999 99999999998 555554443333322222222 789999999
Q ss_pred CCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCch
Q psy232 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGV 220 (299)
Q Consensus 141 DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~ 220 (299)
||||||+++ +|++|++ +++|++++|+++++++..+.+ ...||.++.||..+.+.+++ +|+++++|+||+
T Consensus 239 DgD~DR~~~--vd~~G~~--l~~d~~~al~a~~ll~~~~~~------~~~vv~~v~ss~~l~~~a~~-~g~~v~~t~vG~ 307 (443)
T TIGR01455 239 DGDADRVLA--VDANGRI--VDGDQILYIIARALKESGELA------GNTVVATVMSNLGLERALEK-LGLTLIRTAVGD 307 (443)
T ss_pred cCCCceEEE--ECCCCcE--eCHHHHHHHHHHHHHHhcCCC------CCcEEEEccCCHHHHHHHHH-cCCeEEEeCChH
Confidence 999999988 9999955 999999999999998763111 23688776656565555555 999999999999
Q ss_pred HHHHHHHHhCCcc---------------------------------c--------c-----------------cccccCC
Q psy232 221 KHLHHEALKYDTI---------------------------------N--------A-----------------DTEIVEP 242 (299)
Q Consensus 221 k~i~~~~~~~~~i---------------------------------~--------~-----------------~~~~~~~ 242 (299)
++++++|.+.+++ . + +......
T Consensus 308 ~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (443)
T TIGR01455 308 RYVLEEMRESGYNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGSTLSELAAEFVPYPQTLVNVRVADRKLAAAEA 387 (443)
T ss_pred HHHHHHHHhcCCEEEEcCcceEEecCCCcCCcHHHHHHHHHHHHHHhCCCHHHHHhhccccCeeeeeEEecccccccccC
Confidence 9999999976641 0 0 0000000
Q ss_pred hhhhhHHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHH
Q psy232 243 LGMQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296 (299)
Q Consensus 243 ~~~~~~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~ 296 (299)
......++...... ++||+|||||||||++|||+||+|++++++|++.+.++|+
T Consensus 388 ~~~~~~~~~~~~~~~~~gW~LiRpS~teP~irv~~Ea~~~e~~~~l~~~~~~~v~ 442 (443)
T TIGR01455 388 PAVKAAIEDAEAELGGTGRILLRPSGTEPLIRVMVEAADEELVQQLADTLADVVS 442 (443)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 00111222222222 5799999999999999999999999999999999999885
No 23
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.4e-52 Score=400.59 Aligned_cols=254 Identities=22% Similarity=0.251 Sum_probs=198.4
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc--------------------------c-cHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV--------------------------F-EESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~--------------------------~-~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++++..+ + ..+.|++++.+.++ .+.
T Consensus 87 i~ItaShnp~~~ngiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~~~--~~~--- 161 (439)
T cd03087 87 VMITASHNPPEYNGIKLVNPDGTEFSREQEEEIEEIIFSERFRRVAWDEVGSVRREDSAIDEYIEAILDKVD--IDG--- 161 (439)
T ss_pred EEEEeCCCCHHHCcEEEECCCCCcCCHHHHHHHHHHHhcCCccccccccCeeEEecCccHHHHHHHHHHhcC--ccc---
Confidence 499999999999999999999998864321 1 45667777766655 111
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCc
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNN 135 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~ad 135 (299)
.+++||++|++||+++.+++.+|++||| +++.+|+.||+ .+++ ..| .|.++++..+ .+||
T Consensus 162 ---~~~lkIvid~~~G~~~~~~~~~l~~lg~--~v~~~~~~~d~-~f~~-----~~p---~p~~~~l~~l~~~v~~~~ad 227 (439)
T cd03087 162 ---GKGLKVVVDCGNGAGSLTTPYLLRELGC--KVITLNANPDG-FFPG-----RPP---EPTPENLSELMELVRATGAD 227 (439)
T ss_pred ---CCCCEEEEECCCCchHHHHHHHHHHcCC--EEEEECCcCCC-CCCC-----CCC---CCCHHHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999 99999999997 3222 222 2344444332 7899
Q ss_pred EEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEE
Q psy232 136 KYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIF 215 (299)
Q Consensus 136 lGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~ 215 (299)
+|++|||||||+++ +|++|++ +++|++++|+++++++. ++ +.||.+ ++++.+.+.+++.+|+++++
T Consensus 228 lgia~D~DgDR~~~--vd~~G~~--l~~d~~~~l~a~~ll~~---~~------~~vv~~-v~ss~~l~~~a~~~g~~~~~ 293 (439)
T cd03087 228 LGIAHDGDADRAVF--VDEKGRF--IDGDKLLALLAKYLLEE---GG------GKVVTP-VDASMLVEDVVEEAGGEVIR 293 (439)
T ss_pred EEEEEcCCCceEEE--ECCCCCE--echHHHHHHHHHHHHhc---CC------CcEEEe-ccchHHHHHHHHHcCCEEEE
Confidence 99999999999998 9999965 99999999999999875 12 457755 55554445555559999999
Q ss_pred ecCchHHHHHHHHhCCcc--------------------------------ccc--------------------------c
Q psy232 216 TSTGVKHLHHEALKYDTI--------------------------------NAD--------------------------T 237 (299)
Q Consensus 216 t~~G~k~i~~~~~~~~~i--------------------------------~~~--------------------------~ 237 (299)
|+||+||++++|.+.+++ ..+ .
T Consensus 294 ~~~G~k~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~l~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 373 (439)
T cd03087 294 TPVGDVHVAEEMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAEEKPLSELLDELPKYPLLREKVECPDEKKE 373 (439)
T ss_pred EecChHHHHHHHHhcCCeEEecCCCCEecCCcCCcCCHHHHHHHHHHHHhcCCCHHHHHHhccccccccccccCChHhHH
Confidence 999999999999875530 000 0
Q ss_pred ccc----C--Ch--hhhhHHHHhhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 238 EIV----E--PL--GMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 238 ~~~----~--~~--~~~~~iDGik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
.++ + +. ..++.+||+|+.+++||+|||||||||++|||+|+.|++.+++|++.+.++|
T Consensus 374 ~i~~~l~~~~~~~~~~i~~~DG~k~~~~~~WvliRpS~tep~~rvy~Ea~~~~~a~~l~~~~~~~~ 439 (439)
T cd03087 374 EVMEAVEEELSDADEDVDTIDGVRIEYEDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRSKV 439 (439)
T ss_pred HHHHHHHHhhhhccCCeeecceEEEecCCcEEEEeccCCccEEEEEEeeCCHHHHHHHHHHHHhhC
Confidence 010 0 00 2356789999999899999999999999999999999999999999998764
No 24
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=4.3e-52 Score=409.55 Aligned_cols=265 Identities=13% Similarity=0.115 Sum_probs=199.5
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc--------------------------------ccHHHHHHHHHHHHHHhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV--------------------------------FEESEYFTHFGNAYLSYQ 56 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~--------------------------------~~~~~Y~~~l~~~~~~~~ 56 (299)
=||||||||++||||||++++|.++.+..+ +..+.|++++.+.++.
T Consensus 172 ImITASHNP~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~e~~~~~~~~~~~~~~g~i~~~d~~~~Y~~~l~~~i~~-- 249 (583)
T PLN02371 172 IMITASHLPYNRNGLKFFTKDGGLGKPDIKDILERAARIYKEWSDEGLLKSSSGASSVVCRVDFMSTYAKHLRDAIKE-- 249 (583)
T ss_pred EEEeCCCCCCCCCCEEEeCCCCCCCchHHHHHHHHHHhhcccccccccchhhhccCCcEEEechHHHHHHHHHHHHHH--
Confidence 599999999999999999999987764321 2235677777666652
Q ss_pred hhhh---ccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEE-EEccccCCCCCCCCCCCCCCCcccccCCcccccc-
Q psy232 57 KFLL---TDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIE-VYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK- 131 (299)
Q Consensus 57 ~~i~---~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~-~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~- 131 (299)
..+. ...+.+++|||+||+||+++.+++.+|+.||| +++ .+|+.||| .++++ .|.+.. ++++..+
T Consensus 250 ~~~~~~~~~~~~~~lkIvvD~~nGag~~~~~~lL~~LG~--~v~~~~~~~pDg-~Fp~~-----~P~P~~--~~~l~~l~ 319 (583)
T PLN02371 250 GVGHPTNYETPLEGFKIVVDAGNGAGGFFAEKVLEPLGA--DTSGSLFLEPDG-MFPNH-----IPNPED--KAAMSATT 319 (583)
T ss_pred hhccccccccCCCCCEEEEeCCCCchHHHHHHHHHHcCC--CeEeeccCCCCC-CCCCc-----CCCCCC--HHHHHHHH
Confidence 1110 00113689999999999999999999999999 888 88999998 54443 222111 1222222
Q ss_pred -----CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHH
Q psy232 132 -----NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIK 206 (299)
Q Consensus 132 -----~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~ 206 (299)
.+||+|++|||||||+++ +|++| +++++|++++|+++++++.. ++ ..||.+++||..+.+.++
T Consensus 320 ~~v~~~~aDlGia~DgDaDR~~v--vD~~G--~~i~gd~l~aLla~~ll~~~--~g------~~VV~~v~sS~~l~~ia~ 387 (583)
T PLN02371 320 QAVLANKADLGIIFDTDVDRSAV--VDSSG--REINRNRLIALMSAIVLEEH--PG------TTIVTDSVTSDGLTTFIE 387 (583)
T ss_pred HHHHhcCCCEEEEECCCccceeE--ECCCC--EEECHHHHHHHHHHHHHHhC--CC------CEEEEecccchhHHHHHH
Confidence 789999999999999999 99999 55999999999999998763 22 357766555556555555
Q ss_pred HhCCCeEEEecCchHHHHHHHHhCC-----c----------c----------------------c------cc-------
Q psy232 207 NTLNIDVIFTSTGVKHLHHEALKYD-----T----------I----------------------N------AD------- 236 (299)
Q Consensus 207 ~~~g~~v~~t~~G~k~i~~~~~~~~-----~----------i----------------------~------~~------- 236 (299)
+ +|+++++|+||+||+.++|.+.+ + + . .+
T Consensus 388 ~-~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~ile~la~~~~~~~~~~Lsel~~ 466 (583)
T PLN02371 388 K-KGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKIIIELVRMRAAGAGGGLGDLIE 466 (583)
T ss_pred H-cCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 5 89999999999999999998632 1 0 0 00
Q ss_pred -----------c-cccCCh-------------------------hhhhHHHHhhhh----cCCceEEEecCCCcceEEEE
Q psy232 237 -----------T-EIVEPL-------------------------GMQDSINKSVAK----FNNARSFVRPSGTEDIVRIY 275 (299)
Q Consensus 237 -----------~-~~~~~~-------------------------~~~~~iDGik~~----~~~gw~liRpSgTEp~iriy 275 (299)
+ .+-.++ ...+.+||+|+. +++||+|||||+|||++|||
T Consensus 467 ~lp~~~~~~~~r~~v~~~~~~~~~kg~~v~~~l~~~~~~~~~~~~~~~~~DGvkv~~~~~~~~gWvLiRpS~TEP~iri~ 546 (583)
T PLN02371 467 DLEEPLEAVELRLKILDEGKDFKAYGEEVLEHLRNSIESDGKLEGAPVNYEGVRVSDEGEGFGGWFLLRQSLHDPVIPLN 546 (583)
T ss_pred hchhccCCceeeecCCccchhHHHHHHHHHHHHHhhhhcccccccCccccceEEEEecccCCCceEEEEeCCCCceEEEE
Confidence 0 000010 013468999998 78899999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhh
Q psy232 276 VEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 276 ~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
+||.|++.++++++.+.++|+++
T Consensus 547 ~Ea~s~e~a~~l~~~~~~~v~~~ 569 (583)
T PLN02371 547 IESSSPGGAQKMALVVLTWLKEF 569 (583)
T ss_pred EeECCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999998765
No 25
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.2e-52 Score=387.70 Aligned_cols=259 Identities=25% Similarity=0.306 Sum_probs=193.9
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc---------------------------cccHHHHHHHHHHHHHHhhhhhhc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR---------------------------VFEESEYFTHFGNAYLSYQKFLLT 61 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~---------------------------~~~~~~Y~~~l~~~~~~~~~~i~~ 61 (299)
=||||||||++||||||++++|.++++.. .+..+.|++++.+.++ .+.|+
T Consensus 33 I~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~i~--~~~i~- 109 (355)
T cd03084 33 IMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEKEDEPSAVAYELGGSVKAVDILQRYFEALKKLFD--VAALS- 109 (355)
T ss_pred EEEEeCCCChhHCcEEEecCCCCcCCHHHHHHHHHHHhcccccccccccCCCeEEEcCCHHHHHHHHHHhcC--hhhhc-
Confidence 48999999999999999999998886431 1345778888888876 34443
Q ss_pred cCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCc
Q psy232 62 DNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNN 135 (299)
Q Consensus 62 ~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~ad 135 (299)
.+++||++||+||+++.+++++|++||| +++.+|+.||+ .+++ ..|++.. ++++..+ .++|
T Consensus 110 ---~~~~kvvvD~~~G~~~~~~~~ll~~lg~--~v~~~n~~~d~-~F~~-----~~p~p~~--~~~l~~l~~~v~~~~ad 176 (355)
T cd03084 110 ---NKKFKVVVDSVNGVGGPIAPQLLEKLGA--EVIPLNCEPDG-NFGN-----INPDPGS--ETNLKQLLAVVKAEKAD 176 (355)
T ss_pred ---cCCCEEEEECCCchHHHHHHHHHHHcCC--cEEEEcCcCCC-CCCC-----CCCCCCc--hhhHHHHHHHHHhcCCC
Confidence 4789999999999999999999999999 99999999997 3222 2332111 2333222 7899
Q ss_pred EEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEE
Q psy232 136 KYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIF 215 (299)
Q Consensus 136 lGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~ 215 (299)
+|++|||||||+.+ +|++|+ ++++|++++|+++++++.. .+ ++.||.++.||.. .+.+++.+|++|+|
T Consensus 177 lG~a~DgDgDRl~~--vd~~G~--~l~~d~~~al~~~~l~~~~-~~------~~~vv~~v~ss~~-i~~ia~~~g~~v~~ 244 (355)
T cd03084 177 FGVAFDGDADRLIV--VDENGG--FLDGDELLALLAVELFLTF-NP------RGGVVKTVVSSGA-LDKVAKKLGIKVIR 244 (355)
T ss_pred EEEEEcCCCceeEE--ECCCCc--eeCHhHHHHHHHHHHHHhc-CC------CCCEEEEccchHH-HHHHHHHcCCcEEE
Confidence 99999999999999 999995 5999999999999998652 11 2567766555555 45555559999999
Q ss_pred ecCchHHHHHHHHhCCcc---c-------------ccc-----cccC-----ChhhhhHHHHhhhhc---CC--ceEEEe
Q psy232 216 TSTGVKHLHHEALKYDTI---N-------------ADT-----EIVE-----PLGMQDSINKSVAKF---NN--ARSFVR 264 (299)
Q Consensus 216 t~~G~k~i~~~~~~~~~i---~-------------~~~-----~~~~-----~~~~~~~iDGik~~~---~~--gw~liR 264 (299)
||||+++++++|.+.+++ + .+. .+++ ...+.+.++.+-..+ .+ ||+|||
T Consensus 245 t~~G~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~~Ls~l~~~~p~~~~~~~~v~gW~lir 324 (355)
T cd03084 245 TKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLSELFSELPRYYYIRLKVRGWVLVR 324 (355)
T ss_pred ecCcHHHHHHHHHhcCceEEecCcCCEEECCcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHhhHhcccccccceEEEEe
Confidence 999999999999987651 0 000 0000 011222223222111 12 899999
Q ss_pred cCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 265 PSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 265 pSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
||||||++|||+||+|++++++|++.+.++|
T Consensus 325 ps~tep~~ri~~Ea~~~e~a~~l~~~~~~~~ 355 (355)
T cd03084 325 ASGTEPAIRIYAEADTQEDVEQIKKEARELV 355 (355)
T ss_pred cCCCCcEEEEEEeeCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999988764
No 26
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=1.7e-52 Score=403.88 Aligned_cols=257 Identities=21% Similarity=0.223 Sum_probs=200.6
Q ss_pred eecCCCCCCCCCceEEECCCCCCCCCcc--------------------------cccHHHHHHHHHHHHHHhhhhhhccC
Q psy232 10 EILNLYNKSYSQDIYFDGANGNHNVNSR--------------------------VFEESEYFTHFGNAYLSYQKFLLTDN 63 (299)
Q Consensus 10 ~iTaSHNP~~~nGiK~~~~~G~~~~~~~--------------------------~~~~~~Y~~~l~~~~~~~~~~i~~~~ 63 (299)
||||||||++||||||++++|.++++.. .+..+.|++++.+.++ .+.|+
T Consensus 96 ~ITaSHnp~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~~g~i~~~~~~~~Y~~~l~~~~~--~~~i~--- 170 (461)
T cd05800 96 MITASHNPPEYNGVKVKPAFGGSALPEITAAIEARLASGEPPGLEARAEGLIETIDPKPDYLEALRSLVD--LEAIR--- 170 (461)
T ss_pred EEccCCCCcccCeEEEeCCCCCcCChHHHHHHHHHHhhccccccccccCCceeecCCHHHHHHHHHHHhC--hhhhh---
Confidence 9999999999999999999998886431 1456778888888776 23333
Q ss_pred CCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCcEE
Q psy232 64 KSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNNKY 137 (299)
Q Consensus 64 ~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~adlG 137 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.||| .++++ .|. |.++++..+ .+||+|
T Consensus 171 -~~~~kivvd~~~G~~~~~~~~il~~lg~--~v~~~~~~~dg-~F~~~-----~p~---p~~~~l~~l~~~v~~~~ad~G 238 (461)
T cd05800 171 -EAGLKVVVDPMYGAGAGYLEELLRGAGV--DVEEIRAERDP-LFGGI-----PPE---PIEKNLGELAEAVKEGGADLG 238 (461)
T ss_pred -cCCceEEEeCCCCCcHHHHHHHHHHcCC--CEEEeeCCcCC-CCCCC-----CCC---CCHHHHHHHHHHHHhcCCCEE
Confidence 4789999999999999999999999999 99999999998 44432 222 222333222 789999
Q ss_pred EEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEec
Q psy232 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTS 217 (299)
Q Consensus 138 ia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~ 217 (299)
++|||||||+++ +|++| +++++|++++|+++++++..++ ++.||.+..|| .+.+.+++.+|+++++|+
T Consensus 239 ia~D~DgDR~~v--vd~~G--~~l~~d~~~al~a~~ll~~~~~-------~~~vv~~v~ss-~~~~~~a~~~g~~v~~t~ 306 (461)
T cd05800 239 LATDGDADRIGA--VDEKG--NFLDPNQILALLLDYLLENKGL-------RGPVVKTVSTT-HLIDRIAEKHGLPVYETP 306 (461)
T ss_pred EEECCCCCeEEE--EeCCC--ceeCHHHHHHHHHHHHHHcCCC-------CCcEEEEcchH-HHHHHHHHHhCCeeeeCC
Confidence 999999999999 99999 4599999999999999876211 24677665544 455666666899999999
Q ss_pred CchHHHHHHHHhCCc----------c-----------------------------------c------------------
Q psy232 218 TGVKHLHHEALKYDT----------I-----------------------------------N------------------ 234 (299)
Q Consensus 218 ~G~k~i~~~~~~~~~----------i-----------------------------------~------------------ 234 (299)
||+++++++|.+.++ + .
T Consensus 307 ~G~~~v~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~L~~l~~~l~~~~g~~~~~~~~i~~~~~ 386 (461)
T cd05800 307 VGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVAELEEEYGPSYYDRIDLRLTPA 386 (461)
T ss_pred CCHHHHHHHHhhCCeEEEEcCcCceeCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHhCCCceeecCeecCHH
Confidence 999999999987553 0 0
Q ss_pred cccc----ccCC--h-------hhhhHHHHhhhhcC-CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 235 ADTE----IVEP--L-------GMQDSINKSVAKFN-NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 235 ~~~~----~~~~--~-------~~~~~iDGik~~~~-~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
.+.. +.+. . ...+.+||+|+.++ ++|+|||||||||++|||+||+|++.++++++.+.+++
T Consensus 387 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~dGvrv~~~d~~wvlvRpS~tep~iriy~Ea~~~~~a~~l~~~~~~~~ 461 (461)
T cd05800 387 QKEAILEKLKNEPPLSIAGGKVDEVNTIDGVKLVLEDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKKLA 461 (461)
T ss_pred HHHHHHHHHhccCchhhCCceeEEEEecCeEEEEEcCCcEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHhhC
Confidence 0000 1110 0 13466899999996 46999999999999999999999999999999988764
No 27
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=3e-51 Score=401.29 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=196.2
Q ss_pred CceecCCCCCCCCCceEEECCCCCCCCCcccc-----------------------------------cHHHHHHHHHHHH
Q psy232 8 YEEILNLYNKSYSQDIYFDGANGNHNVNSRVF-----------------------------------EESEYFTHFGNAY 52 (299)
Q Consensus 8 ~~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~-----------------------------------~~~~Y~~~l~~~~ 52 (299)
-=||||||||++||||||++++|.++.+..+. ..+.|++++.+.+
T Consensus 139 GI~ITASHNP~e~NGiK~~~~~G~~i~~~~~~~Ie~~i~~~~~~~~e~~~~~~~~~~~~~g~~~~~d~~~~Y~~~l~~~i 218 (543)
T TIGR01132 139 GIVITPSHNPPEDGGIKYNPPNGGPADTEATQAIEDRANALLANGLKGVKRLPLAQALASGTVKAHDLVQPYVDGLADIV 218 (543)
T ss_pred EEEEeCCCCCCccCeEEEECCCCCCCChHHHHHHHHHHHHhhhcccccccccChhhhhccCceecCCcHHHHHHHHHHhh
Confidence 45999999999999999999999877654222 2345666565555
Q ss_pred HHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCC-CCcccccCCcccccc
Q psy232 53 LSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGAD-FAKTKKIVPTGVNIK 131 (299)
Q Consensus 53 ~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~-~p~~~~~~~~~l~~~ 131 (299)
+ ++.++ .+++|||+||+||+++.+++++|++||| +++.+|+.+|+ .++.+++-++ ++....+.++++..+
T Consensus 219 ~--~~~i~----~~~lkVvvD~~~Ga~~~~~~~il~~lG~--~v~~l~~~~d~-~f~~~~pd~~~~~~~~~~~~e~l~~l 289 (543)
T TIGR01132 219 D--MAAIQ----KAGLRLGVDPLGGSGIDYWKRIAEKYNL--NLTLVNPQVDP-TFRFMTLDKDGKIRMDCSSPYAMAGL 289 (543)
T ss_pred h--hhhhh----cCCceEEEeCCCCCcHHHHHHHHHHcCC--CEEEEcCeeCC-CCCCCCCCcccccCCCCCCHHHHHHH
Confidence 4 22232 4689999999999999999999999999 99999999997 3322221100 000011122332222
Q ss_pred ----CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHH
Q psy232 132 ----NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKN 207 (299)
Q Consensus 132 ----~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~ 207 (299)
.+||+|++|||||||+++ +|++| + ++||++++|+++++++.. ++.+ .+..|+.|.+||..+ +.+++
T Consensus 290 ~~~~~~aDlGia~DgDaDR~~v--vd~~g-~--i~gd~~~aLla~~ll~~~--~~~~--~~~~Vv~tv~sS~~l-~~ia~ 359 (543)
T TIGR01132 290 LALRDKYDLAFGNDPDYDRHGI--VTPAG-L--MNPNHYLAVAINYLFQHR--PQWG--GDVAVGKTLVSSAMI-DRVVA 359 (543)
T ss_pred hhcccCCCEEEEeCCCCCCeeE--EecCc-e--eCHHHHHHHHHHHHHHhC--cccC--CCceEEEEeccHHHH-HHHHH
Confidence 679999999999999999 99985 4 999999999999998763 1100 012456565555555 55555
Q ss_pred hCCCeEEEecCchHHHHHHHHhCCc--------------------------c------------------------cc--
Q psy232 208 TLNIDVIFTSTGVKHLHHEALKYDT--------------------------I------------------------NA-- 235 (299)
Q Consensus 208 ~~g~~v~~t~~G~k~i~~~~~~~~~--------------------------i------------------------~~-- 235 (299)
.+|++++||+||+||++++|.+.++ | .+
T Consensus 360 ~~g~~v~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~~~~~L~~ll~~lp~~~ 439 (543)
T TIGR01132 360 DLGRQLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQQHYNELAAKF 439 (543)
T ss_pred HcCCceeecCccHHHHHHHHhcCCeEEEEeccCceEecccCCCCcccCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 5999999999999999999985331 0 00
Q ss_pred ----------------c---ccccCC-------------------hhhhhHHHHhhhhcCCceEEEecCCCcceEEEEEE
Q psy232 236 ----------------D---TEIVEP-------------------LGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVE 277 (299)
Q Consensus 236 ----------------~---~~~~~~-------------------~~~~~~iDGik~~~~~gw~liRpSgTEp~iriy~E 277 (299)
+ +.+.+. ....+.+||+|+.+++||+|||||||||++|||+|
T Consensus 440 ~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGvki~~~~gWvliRpSgTEP~irvy~E 519 (543)
T TIGR01132 440 GAPSYNRIQAPATSAQKARLKKLSPEMVSATTLAGDPITARLTAAPGNGAAIGGLKVTTDNGWFAARPSGTEDVYKIYCE 519 (543)
T ss_pred CCceEEEEecCChHHHHHHHHHHhccCCChHHhCCceeEEEEeccCCCCccCCeEEEEEcCcEEEEecCCCCceEEEEEE
Confidence 0 001100 00123489999999999999999999999999999
Q ss_pred e-CCHHHHHHHHHHHHHHHHh
Q psy232 278 A-ETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 278 a-~~~~~~~~l~~~~~~~v~~ 297 (299)
| .|++.++++++++.++|+.
T Consensus 520 a~~~~~~~~~l~~~~~~~v~~ 540 (543)
T TIGR01132 520 SFKGEEHLKQIEKEAVEIVSE 540 (543)
T ss_pred ecCCHHHHHHHHHHHHHHHHH
Confidence 9 6999999999999999875
No 28
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=3.7e-51 Score=399.21 Aligned_cols=269 Identities=16% Similarity=0.091 Sum_probs=196.0
Q ss_pred CceecCCCCCCCCCceEEECCCCCCCCCccc-----------------------------------ccHHHHHHHHHHHH
Q psy232 8 YEEILNLYNKSYSQDIYFDGANGNHNVNSRV-----------------------------------FEESEYFTHFGNAY 52 (299)
Q Consensus 8 ~~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~-----------------------------------~~~~~Y~~~l~~~~ 52 (299)
-=||||||||++||||||++++|.++++..+ +..+.|++++.+.+
T Consensus 122 GI~ITASHNP~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~v 201 (522)
T cd05801 122 GIVITPSHNPPEDGGFKYNPPHGGPADTDITRWIEKRANALLANGLKGVKRIPLEAALASGYTHRHDFVTPYVADLGNVI 201 (522)
T ss_pred EEEEECCCCCcccCEEEEECCCCCCCCHHHHHHHHHhhhhhhhcccccccccchhhhhccCceecCCcHHHHHHHHHHhh
Confidence 4599999999999999999999977654321 23455666665555
Q ss_pred HHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCccccc-CCcccccc
Q psy232 53 LSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKI-VPTGVNIK 131 (299)
Q Consensus 53 ~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~-~~~~l~~~ 131 (299)
+ ++.++ .+++|||+||+||+++.+++++|++||| +++.+|+.+|+ .++.+++......+..| .++++..+
T Consensus 202 ~--~~~~~----~~~lkVvvd~~~G~~~~~~~~ll~~lG~--~v~~l~~~~d~-~f~~~~p~~~~~~~~~p~~~~~l~~l 272 (522)
T cd05801 202 D--MDAIR----KSGLRLGVDPLGGASVPYWQPIAEKYGL--NLTVVNPKVDP-TFRFMTLDHDGKIRMDCSSPYAMAGL 272 (522)
T ss_pred C--hhhhh----cCCceEEEeCCCCccHHHHHHHHHHcCC--CEEEEcCeeCC-CCCCCCCCcccCCCCCCCCHHHHHHH
Confidence 4 22232 4689999999999999999999999999 99999999997 43332211000000111 12333322
Q ss_pred ----CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHH
Q psy232 132 ----NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKN 207 (299)
Q Consensus 132 ----~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~ 207 (299)
.+||+|++|||||||+++ +|++| +++++|++++|+++++++.. +.. ..+..||.+++||.. .+.+++
T Consensus 273 ~~~~~~adlGia~DgDaDRl~v--vd~~G--~~l~gd~~~aLla~~ll~~~--~~~--~~~~~vv~tv~sS~~-l~~ia~ 343 (522)
T cd05801 273 LKLKDKFDLAFANDPDADRHGI--VTPSA--GLMNPNHYLSVAIDYLFTHR--PLW--NKSAGVGKTLVSSSM-IDRVAA 343 (522)
T ss_pred HHhhcCCCEEEEECCCccceeE--EecCC--eEECHHHHHHHHHHHHHHhC--ccc--CCCceEEEEcchHHH-HHHHHH
Confidence 489999999999999999 99999 55999999999999998763 100 002367877665555 455566
Q ss_pred hCCCeEEEecCchHHHHHHHHhCCcc-----------------------------------------------cc-----
Q psy232 208 TLNIDVIFTSTGVKHLHHEALKYDTI-----------------------------------------------NA----- 235 (299)
Q Consensus 208 ~~g~~v~~t~~G~k~i~~~~~~~~~i-----------------------------------------------~~----- 235 (299)
.+|+++++|+||+|||.++|.+.+++ +.
T Consensus 344 ~~g~~~~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~~le~la~~~~~L~~~l~~l~~~~ 423 (522)
T cd05801 344 ALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEILAVTGKDPGQLYQELTERF 423 (522)
T ss_pred HcCCeeeecCccHHHHHHHHhcCCeEEEEeccCceEeccCCCCCcccCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 69999999999999999999875420 00
Q ss_pred -c----c-cccCCh---h-----------------------------hhhHHHHhhhhcCCceEEEecCCCcceEEEEEE
Q psy232 236 -D----T-EIVEPL---G-----------------------------MQDSINKSVAKFNNARSFVRPSGTEDIVRIYVE 277 (299)
Q Consensus 236 -~----~-~~~~~~---~-----------------------------~~~~iDGik~~~~~gw~liRpSgTEp~iriy~E 277 (299)
. + .+-.+. . ..+.+||+|+.+++||+|||||||||++|||+|
T Consensus 424 g~~~~~~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGvk~~~~~gWvliRpSgTEP~iriy~E 503 (522)
T cd05801 424 GEPYYARIDAPATPEQKARLKKLSPEQVTATELAGDPILAKLTRAPGNGASIGGLKVTTANGWFAARPSGTEDVYKIYAE 503 (522)
T ss_pred CcCeeeccCCCChHHHHHHHHHHhccCCCchHhCCCceEEEEecccCCCccCceEEEEEcCeEEEEEccCCCceEEEEEE
Confidence 0 0 000000 0 012489999999999999999999999999999
Q ss_pred e-CCHHHHHHHHHHHHHH
Q psy232 278 A-ETSEDVNALTEEIQQV 294 (299)
Q Consensus 278 a-~~~~~~~~l~~~~~~~ 294 (299)
| .|++.++++++.+.++
T Consensus 504 a~~~~~~~~~l~~~~~~~ 521 (522)
T cd05801 504 SFLSEEHLKKIQKEAQEI 521 (522)
T ss_pred ecCCHHHHHHHHHHHHHh
Confidence 9 6999999999888765
No 29
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.1e-50 Score=383.86 Aligned_cols=259 Identities=25% Similarity=0.311 Sum_probs=193.5
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc-------------------------ccHHHHHHHHHHHHHHhhhhhhccC
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV-------------------------FEESEYFTHFGNAYLSYQKFLLTDN 63 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~-------------------------~~~~~Y~~~l~~~~~~~~~~i~~~~ 63 (299)
=||||||||++||||||+ ++|.++++..+ +..+.|++.+.+.++. +.
T Consensus 91 I~ITaSHnP~~~nGiK~~-~~G~~i~~~~~~~ie~~~~~~~~~~~~~~g~~~~~~~~~~~Y~~~l~~~v~~----~~--- 162 (429)
T PRK14322 91 VVISASHNPPEYNGIKVL-KGGYKIPDEMEVEIEERIESGYFPVRSVVGRTKSFREGRDMYIGAVLEMFRD----LD--- 162 (429)
T ss_pred EEEECCCCChHhCCEEEe-cCCCcCCHHHHHHHHHHHhcCCCccccCceeEEeccchHHHHHHHHHHhhcc----cc---
Confidence 499999999999999999 89988774311 2345577777666541 11
Q ss_pred CCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeCCC
Q psy232 64 KSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGD 143 (299)
Q Consensus 64 ~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~DgD 143 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.||+ .++|+.|++.+|..+...+ .++|+|++||||
T Consensus 163 -~~~~kVvvD~~nG~~~~~~~~ll~~lg~--~v~~ln~~~dg-~~~~~~~~~~~l~~l~~~v------~~~dlGia~DgD 232 (429)
T PRK14322 163 -LTGEMVSLDLANGATTTTAKEVFEFLGA--KVEVFNDSQDG-LLINQGCGATHPRFLAEEM------KNGKVGFTFDGD 232 (429)
T ss_pred -cCCCEEEEECCCChHHHHHHHHHHHcCC--EEEEECCcCCC-CCCCCCCCcCCHHHHHHHH------HhcCEEEEEcCC
Confidence 3689999999999999999999999999 99999999998 6667666655443222111 346999999999
Q ss_pred CCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHHH
Q psy232 144 ADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHL 223 (299)
Q Consensus 144 gDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~i 223 (299)
|||+++ +|++| +++++|++++|++.++++..+. . .+.||.++.||..+.+.+++ +|+++++||||++++
T Consensus 233 ~DR~~~--vd~~G--~~i~~d~~~~l~a~~l~~~~~~-~-----~~~vV~~v~ss~~l~~~a~~-~g~~v~~t~vG~~~i 301 (429)
T PRK14322 233 GDRVIA--VDEER--NVVNGDRIIGILAVGLKEEGRL-N-----SDTVVGTVMTNGGLEDFLKE-RGIKLLRTKVGDKYV 301 (429)
T ss_pred CceEEE--ECCCC--cEEChHHHHHHHHHHHHHhcCC-C-----CCeEEEeecCchHHHHHHHH-cCCeEEEeCCccHHH
Confidence 999988 99999 5599999999999999876311 1 13677776666666666555 899999999999999
Q ss_pred HHHHHhCCcc--------------------------------cccc-----------------cccCCh---hhhhHHHH
Q psy232 224 HHEALKYDTI--------------------------------NADT-----------------EIVEPL---GMQDSINK 251 (299)
Q Consensus 224 ~~~~~~~~~i--------------------------------~~~~-----------------~~~~~~---~~~~~iDG 251 (299)
+++|.+.+++ ...+ .+-.+. .....+..
T Consensus 302 ~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~Ls~l~~~lp~~~~~~~~v~~~~~~~~~~~~~~~ 381 (429)
T PRK14322 302 LEKMLESGANLGGERSGHIIILDRSTTGDGLITALELMRVLKRSGRNLSDFAKEIPDYPQITKNVRRTERMSLENENLRK 381 (429)
T ss_pred HHHHhhcCcceeccCCceEEecCCCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhchhcCeeeeEeeeccccccchHHHHH
Confidence 9999987641 0000 000000 00111111
Q ss_pred hhhh-cCC-ceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHH
Q psy232 252 SVAK-FNN-ARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296 (299)
Q Consensus 252 ik~~-~~~-gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~ 296 (299)
+... .++ +|+|||||||||++|||+||+|++.++++++++.++|+
T Consensus 382 ~~~~~~~~g~w~lvRpS~teP~irv~~Ea~~~~~a~~l~~~~~~~l~ 428 (429)
T PRK14322 382 IVEESTSRGYRVVIRPSGTEPVVRITVEGKDREEIEKIVEEISRVLE 428 (429)
T ss_pred HHHHhcCCCcEEEEccCCCCcEEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 1111 234 59999999999999999999999999999999999886
No 30
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=1.4e-49 Score=389.50 Aligned_cols=268 Identities=16% Similarity=0.109 Sum_probs=195.4
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc-----------------------------------ccHHHHHHHHHHHHH
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV-----------------------------------FEESEYFTHFGNAYL 53 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~-----------------------------------~~~~~Y~~~l~~~~~ 53 (299)
=||||||||++||||||++++|.++.+..+ +..+.|++++.+.++
T Consensus 139 ImITASHNP~e~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~d~~~~Y~~~l~~~i~ 218 (543)
T PRK07564 139 IVITPSHNPPEDGGIKYNPPNGGPADTDVTDAIEARANELLAYGLKGVKRIPLDRALASMTVEVIDPVADYVEDLENVFD 218 (543)
T ss_pred EEEecCCCCcccCeEEEECCCCCcCChHHHHHHHHHHHhhhhcccccccccChhHhccCCcEEecccHHHHHHHHHHhhC
Confidence 499999999999999999999987765432 223455555555554
Q ss_pred HhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCC--CCCCCCCCCCcccccCCcccccc
Q psy232 54 SYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGK--LNFQCGADFAKTKKIVPTGVNIK 131 (299)
Q Consensus 54 ~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~--~n~~~g~~~p~~~~~~~~~l~~~ 131 (299)
.+.++ .+++|||+||+||+++.+++++|++||| +++.+|+.+|++.. ...++|..+|.+.. ++++..+
T Consensus 219 --~~~i~----~~~lkIvvD~~~G~~~~~~~~ll~~lG~--~v~~l~~~~d~~f~~~~~~~~~~~~p~P~~--~~~L~~l 288 (543)
T PRK07564 219 --FDAIR----KAGLRLGVDPLGGATGPYWKAIAERYGL--DLTVVNAPVDPTFNFMPLDDDGKIRMDCSS--PYAMAGL 288 (543)
T ss_pred --hhhhh----cCCceEEEecCCCCcHHHHHHHHHHcCC--cEEEeCCcCCCCCCCCCCCccCCcCCCCCh--HHHHHHH
Confidence 22222 4689999999999999999999999999 99999999887221 00111222332211 1222222
Q ss_pred ----CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCC-ceEEeeeeChhHHHHHH
Q psy232 132 ----NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNI-KVIQTAYTNGNCTNYIK 206 (299)
Q Consensus 132 ----~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~-~vv~t~~ss~~~~~~i~ 206 (299)
.+||+|++|||||||+++ +|+ | +++++|++++|++.++++.. ++. .++ .||.+ ++|+.+.+.++
T Consensus 289 ~~~~~~adlGia~DgDgDRl~v--vd~-G--~~i~~d~~~alla~~ll~~~--~~~---~~~~~Vv~~-v~sS~~l~~ia 357 (543)
T PRK07564 289 LALKDAFDLAFANDPDGDRHGI--VTP-G--GLMNPNHYLAVAIAYLFHHR--PGW---RAGAGVGKT-LVSSAMIDRVA 357 (543)
T ss_pred HhhccCCCEEEEECCCCCceeE--Eec-C--eeechhHHHHHHHHHHHHhC--cCC---CCCceEEEE-ecchHHHHHHH
Confidence 579999999999999999 999 9 55999999999999998653 110 012 56655 55665566666
Q ss_pred HhCCCeEEEecCchHHHHHHHHhCCc--------------------------c------------------------c--
Q psy232 207 NTLNIDVIFTSTGVKHLHHEALKYDT--------------------------I------------------------N-- 234 (299)
Q Consensus 207 ~~~g~~v~~t~~G~k~i~~~~~~~~~--------------------------i------------------------~-- 234 (299)
+.+|+++++|+||+||++++|.+.++ | .
T Consensus 358 ~~~g~~v~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~~~~~L~ell~~l~~~ 437 (543)
T PRK07564 358 AKLGRKLYEVPVGFKWFVNGLDDGSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTGKSPSEIYRELWAR 437 (543)
T ss_pred HHhCCeeeecchHHHHHHHHHhcCceEEEecCcCCeeecccCCCCccccchHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66999999999999999999985321 0 0
Q ss_pred ----------------cc---ccccC---C-h--------hhh-------hHHHHhhhhcCCceEEEecCCCcceEEEEE
Q psy232 235 ----------------AD---TEIVE---P-L--------GMQ-------DSINKSVAKFNNARSFVRPSGTEDIVRIYV 276 (299)
Q Consensus 235 ----------------~~---~~~~~---~-~--------~~~-------~~iDGik~~~~~gw~liRpSgTEp~iriy~ 276 (299)
.+ +.+.+ + . ... +.+||+|+.+++||+|||||||||++|||+
T Consensus 438 ~g~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~gWvlvRpSgTEP~iriy~ 517 (543)
T PRK07564 438 FGRPYYSRHDAPATPEQKAALRKLSPELVGATELAGDPIDASLTEAPGNGAAIGGLKVVTENGWFAARPSGTETTYKIYA 517 (543)
T ss_pred hCCceEEEecCCccHHHHHHHHHHhccCCCchhhCCcceEEEEecCcCCcccCCeEEEEEcCCEEEEEccCCCCeEEEEE
Confidence 00 00111 0 0 011 137899999999999999999999999999
Q ss_pred Ee-CCHHHHHHHHHHHHHHHHh
Q psy232 277 EA-ETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 277 Ea-~~~~~~~~l~~~~~~~v~~ 297 (299)
|| .+++.+++|++.+.++|+.
T Consensus 518 Ea~~~~~~~~~l~~~~~~~~~~ 539 (543)
T PRK07564 518 ESFEGDEHLHQIQKEAQEIVAD 539 (543)
T ss_pred EecCCHHHHHHHHHHHHHHHHH
Confidence 99 6999999999999998865
No 31
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=371.19 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=144.2
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccccc-------------------------------HHHHHHHHHHHHHHhhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRVFE-------------------------------ESEYFTHFGNAYLSYQK 57 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~~-------------------------------~~~Y~~~l~~~~~~~~~ 57 (299)
=||||||||++||||||++++|.++.+..... .+.|++++.+.++ +.
T Consensus 145 ImITASHNP~eyNGiK~~~~~G~~i~~~~~~~i~~~Ie~~~~~~~~~~~~~~~~~~~~~~~d~~~~Yi~~l~~~i~--~~ 222 (584)
T PTZ00150 145 VMVTASHNPKEDNGYKVYWSNGAQIIPPHDKNISAKILSNLEPWSSSWEYLTETLVEDPLAEVSDAYFATLKSEYN--PA 222 (584)
T ss_pred EEEeccCCCCCCCCEEEeCCCCcccCCcccHHHHHHHHHhccccccchhhhccccccchhhhhHHHHHHHHHhhcC--hh
Confidence 48999999999999999999999885543211 1224444444433 11
Q ss_pred hhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCce---EEEEccccCCCCCCCCCCCCCCCcccccCCcc----ccc
Q psy232 58 FLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLK---IEVYNQDVTTQGKLNFQCGADFAKTKKIVPTG----VNI 130 (299)
Q Consensus 58 ~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~---v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~----l~~ 130 (299)
.|+ .+++|||+||+||+++.+++++|+++|| + ++.+++.||| . ||....|.|++ +..
T Consensus 223 ~i~----~~~lkIv~d~~~G~g~~~~~~iL~~lG~--~~~~~v~~~~~pDg-~---------Fp~~~~PnPe~~~~~l~~ 286 (584)
T PTZ00150 223 CCD----RSKVKIVYTAMHGVGTRFVQKALHTVGL--PNLLSVAQQAEPDP-E---------FPTVTFPNPEEGKGALKL 286 (584)
T ss_pred hhc----cCCCeEEEeCCCCccHHHHHHHHHhcCC--CCceEeccccccCc-C---------CCCCCCcChhhhHHHHHH
Confidence 222 4689999999999999999999999999 6 6777888998 3 33222233332 222
Q ss_pred c------CCCcEEEEeCCCCCeeEEeeeCCCC-CeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHH
Q psy232 131 K------NLNNKYLSVDGDADRIIYWYPNEDN-TIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTN 203 (299)
Q Consensus 131 ~------~~adlGia~DgDgDR~~~~~vd~~G-~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~ 203 (299)
+ .+||+|+|+||||||+++ +|+.| +|++++||++++|+++++++..+..+.. ..+..||.|++ |+.+.+
T Consensus 287 ~~~~v~~~~adlgia~DpDaDR~~v--vd~~g~~~~~l~gd~l~aLla~~ll~~~~~~g~~-~~~~~Vv~tv~-sS~~l~ 362 (584)
T PTZ00150 287 SMETAEAHGSTVVLANDPDADRLAV--AEKLNNGWKIFTGNELGALLAWWAMKRYRRQGID-KSKCFFICTVV-SSRMLK 362 (584)
T ss_pred HHHHHHHhCCCEEEEeCCCCCceEE--EEEcCCceEEcChhHHHHHHHHHHHHhhhhcCCC-CCCcEEEEehh-hhHHHH
Confidence 1 789999999999999998 77654 4577999999999999998864111100 00124776655 454556
Q ss_pred HHHHhCCCeEEEecCchHHHHHHHHh
Q psy232 204 YIKNTLNIDVIFTSTGVKHLHHEALK 229 (299)
Q Consensus 204 ~i~~~~g~~v~~t~~G~k~i~~~~~~ 229 (299)
.+++.+|+++++|+||||||+++|.+
T Consensus 363 ~ia~~~g~~v~~t~tGfk~I~~~m~~ 388 (584)
T PTZ00150 363 KMAEKEGFQYDETLTGFKWIGNKAIE 388 (584)
T ss_pred HHHHHcCCEEEECCCChHHHHHHHHH
Confidence 66666999999999999999999985
No 32
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=7.6e-47 Score=369.37 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=146.6
Q ss_pred ceecCCCCC---CCCCceEEECCCCCCCCCccc-----------------------------------------ccHHHH
Q psy232 9 EEILNLYNK---SYSQDIYFDGANGNHNVNSRV-----------------------------------------FEESEY 44 (299)
Q Consensus 9 ~~iTaSHNP---~~~nGiK~~~~~G~~~~~~~~-----------------------------------------~~~~~Y 44 (299)
=|||||||| ++||||||++++|.++++..+ +..+.|
T Consensus 107 ImITASHNP~~~~eyNGiK~~~~~G~~i~~~~~~~I~~~i~~ie~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~d~~~~Y 186 (548)
T cd03085 107 IILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKFGGKPFTVEVIDSVEDY 186 (548)
T ss_pred EEEecCCCCCCCCcCCcEEEecCCCCcCCcHHHHHHHHHHHhccccccccccccChhhcCceeecccCCceEEecCHHHH
Confidence 499999999 799999999999988765432 114566
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHH-HcCCCceE-EEEccccCCCCCCCCCCCCCCCcccc
Q psy232 45 FTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQK-IIESKLKI-EVYNQDVTTQGKLNFQCGADFAKTKK 122 (299)
Q Consensus 45 ~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~-~lg~~~~v-~~ln~~~d~~~~~n~~~g~~~p~~~~ 122 (299)
++++.+.++ ++.|+.....+++|||+||+||+++.+++.+|+ +||| ++ +.+|+.||| .+++ .+|.+
T Consensus 187 i~~l~~~v~--~~~i~~~~~~~~lkVVvD~~nGag~~~~~~lL~~~LG~--~~v~~i~~~pDg-~Fp~-----~~P~P-- 254 (548)
T cd03085 187 VELMKEIFD--FDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGA--PESSVVNCTPLP-DFGG-----GHPDP-- 254 (548)
T ss_pred HHHHHhhhC--HHHHhhhcccCCCEEEEeCCcchhHHHHHHHHHHhcCC--CceEEEeCeeCC-CCCC-----CCCCC--
Confidence 666666554 222220000258999999999999999999996 8999 75 689999998 4333 23332
Q ss_pred cCCcccccc------CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHH--hhcCCCcccCCceEEe
Q psy232 123 IVPTGVNIK------NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELI--ARCNLKDKVNIKVIQT 194 (299)
Q Consensus 123 ~~~~~l~~~------~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~--~~~~~~~~~~~~vv~t 194 (299)
.++++..+ .+||+|+|+||||||+++ +|+ | +++++++++++++.+++... ...+ ...||.+
T Consensus 255 -~~~~l~~L~~~V~~~~ADlGia~DgDaDRl~v--vd~-G--~~i~~d~~lall~~~ll~~~~~~~~~-----~~~VV~t 323 (548)
T cd03085 255 -NLTYAKDLVELMKSGEPDFGAASDGDGDRNMI--LGK-G--FFVTPSDSVAVIAANAKLIPYFYKGG-----LKGVARS 323 (548)
T ss_pred -cHHHHHHHHHHHhccCCCEEEEECCCCCceEE--Eec-C--EEecCCHHHHHHHHHHHHhhhhhhcC-----CcEEEEe
Confidence 22332222 789999999999999999 999 9 56999999999999987531 0111 1257766
Q ss_pred eeeChhHHHHHHHhCCCeEEEecCchHHHHHHHHhCC
Q psy232 195 AYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYD 231 (299)
Q Consensus 195 ~~ss~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~~ 231 (299)
++|+.+.+.+++.+|+++++|+||||||.+.|.+.+
T Consensus 324 -v~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~~ 359 (548)
T cd03085 324 -MPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGK 359 (548)
T ss_pred -CccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcCC
Confidence 555545566666699999999999999999998865
No 33
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=7.8e-47 Score=364.00 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=179.0
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCccc--------------------------ccHHHHHHHHHHHHHHhhhhhhcc
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRV--------------------------FEESEYFTHFGNAYLSYQKFLLTD 62 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~--------------------------~~~~~Y~~~l~~~~~~~~~~i~~~ 62 (299)
=||||||||++||||||++++| ++.+..+ +..+.|++.+.+.++ ...
T Consensus 90 I~ITaSHnp~~~nGiK~~~~~G-~~~~~~e~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~i~--~~~---- 162 (459)
T cd03088 90 IMVTGSHIPADRNGLKFYRPDG-EITKADEAAILAALVELPEALFDPAGALLPPDTDAADAYIARYTDFFG--AGA---- 162 (459)
T ss_pred EEEeCCCCCCCCCCEEEECCCC-CCChHHHHHHHHHHHhhccccccccccCCcccchHHHHHHHHHHHHhC--ccc----
Confidence 4999999999999999999999 3332211 223556666655554 111
Q ss_pred CCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcccccc------CCCcE
Q psy232 63 NKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK------NLNNK 136 (299)
Q Consensus 63 ~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~------~~adl 136 (299)
.+++|||+||+||+++.+++++|++||| +++.+|+.+|. .. ..|.+ +.++++..+ .+||+
T Consensus 163 --~~~lkIvvD~~~G~~~~~~~~ll~~lG~--~v~~l~~~~~~-~~-------~~~~~--~~~~~l~~l~~~v~~~~adl 228 (459)
T cd03088 163 --LKGLRIGVYQHSSVGRDLLVRILEALGA--EVVPLGRSDTF-IP-------VDTEA--VRPEDRALAAAWAAEHGLDA 228 (459)
T ss_pred --cCCCEEEEECCCCCHHHHHHHHHHHcCC--eEEEeCCCCCC-CC-------CCCCc--CCHHHHHHHHHHHHhcCCCE
Confidence 2589999999999999999999999999 99999987664 11 11111 112333222 68999
Q ss_pred EEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEe
Q psy232 137 YLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFT 216 (299)
Q Consensus 137 Gia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t 216 (299)
|++|||||||+++ +|++|+| +++|++++|+++++. . ..|| ++++++.+.+.++. ++++++|
T Consensus 229 Gia~D~DgDR~~v--vd~~G~~--i~~d~l~~l~~~~~~------~------~~Vv-~~v~ss~~i~~~~~--~~~~~~t 289 (459)
T cd03088 229 IVSTDGDGDRPLV--ADETGEW--LRGDILGLLTARFLG------A------DTVV-TPVSSNSAIELSGF--FKRVVRT 289 (459)
T ss_pred EEEeCCCCCCcee--ECCCCCE--ECchHHHHHHHHHhC------C------CEEE-EccCCcHHHHHcCC--ceeEEEC
Confidence 9999999999999 9999966 999999999998752 1 2355 66777766665543 4799999
Q ss_pred cCchHHHHHHHHhC---C---------------------------------cc---------------------------
Q psy232 217 STGVKHLHHEALKY---D---------------------------------TI--------------------------- 233 (299)
Q Consensus 217 ~~G~k~i~~~~~~~---~---------------------------------~i--------------------------- 233 (299)
|||+++++++|.+. + .|
T Consensus 290 ~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~ile~l~~~~~~Ls~ll~~l~~~ 369 (459)
T cd03088 290 RIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKEAGIPLSELVASLPAR 369 (459)
T ss_pred CCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Confidence 99999999999751 0 00
Q ss_pred -------c-----ccc----cccCC--------------hhhhhHHHHhhhhcCC-ceEEEecCCCcceEEEEEEeCCHH
Q psy232 234 -------N-----ADT----EIVEP--------------LGMQDSINKSVAKFNN-ARSFVRPSGTEDIVRIYVEAETSE 282 (299)
Q Consensus 234 -------~-----~~~----~~~~~--------------~~~~~~iDGik~~~~~-gw~liRpSgTEp~iriy~Ea~~~~ 282 (299)
. .+. ++.+. ...++.+||+|+.+++ +|+|||||||||++|||+||+|++
T Consensus 370 ~~~~~~i~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~v~~~DGvk~~~~dg~W~liRpSgTEP~~riy~Ea~~~~ 449 (459)
T cd03088 370 FTASDRLQNFPTEKSQALIARLSADPEARAAFFFALGGEVASIDTTDGLRMTFANGDIVHLRPSGNAPELRCYVEADSEE 449 (459)
T ss_pred ceEhhccccCCHHHHHHHHHHHHhChHhhhhhhhccCCcccccCCCCeEEEEECCCCEEEEECCCCCceEEEEEecCCHH
Confidence 0 000 01110 1235679999999964 699999999999999999999999
Q ss_pred HHHHHHHH
Q psy232 283 DVNALTEE 290 (299)
Q Consensus 283 ~~~~l~~~ 290 (299)
++++|++.
T Consensus 450 ~~~~l~~~ 457 (459)
T cd03088 450 RARELLAR 457 (459)
T ss_pred HHHHHHHh
Confidence 99999875
No 34
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=6.5e-46 Score=360.36 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=178.5
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcccc--------------------------------cHHHHHHHHHHHHHHhh
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRVF--------------------------------EESEYFTHFGNAYLSYQ 56 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~--------------------------------~~~~Y~~~l~~~~~~~~ 56 (299)
-||||||||++||||||++++|.++.+..+. ..+.|++.+.+.++.
T Consensus 101 I~iTaSHnp~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Y~~~l~~~i~~-- 178 (487)
T cd05799 101 IMITASHNPKEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKYIGEEIDDAYLEAVKKLLVN-- 178 (487)
T ss_pred EEEEeeCCCcccCCEEEecCCCCcCCCHHHHHHHHHHHhcccccccchhhhccCCceEEcchHHHHHHHHHHHhhhcc--
Confidence 4899999999999999999999988764321 234455555555441
Q ss_pred hhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCce---EEEEccccCCCCCCCCCCCCCCCcccccCCcccccc--
Q psy232 57 KFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLK---IEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK-- 131 (299)
Q Consensus 57 ~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~---v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~-- 131 (299)
..+ ...+++|||+||+||+++.+++.+|++||| + ++.+|+.||+ .+++. ..|.+.. ++++..+
T Consensus 179 ~~~---~~~~~~kVvvD~~~G~~~~~~~~il~~LG~--~~v~~~~~~~~~d~-~F~~~----~~p~p~~--~~~l~~l~~ 246 (487)
T cd05799 179 PEL---NEGKDLKIVYTPLHGVGGKFVPRALKEAGF--TNVIVVEEQAEPDP-DFPTV----KFPNPEE--PGALDLAIE 246 (487)
T ss_pred ccc---ccCCCCcEEEeCCCCccHHHHHHHHHHcCC--CCcEEeeeccCCCc-CCCCC----CCCCCCC--HHHHHHHHH
Confidence 111 024689999999999999999999999999 7 5667888887 32221 1121111 2233222
Q ss_pred ----CCCcEEEEeCCCCCeeEEeeeCCC--CCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHH
Q psy232 132 ----NLNNKYLSVDGDADRIIYWYPNED--NTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYI 205 (299)
Q Consensus 132 ----~~adlGia~DgDgDR~~~~~vd~~--G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i 205 (299)
.++|+|++|||||||+++ +|++ |+++++++|++++|+++++++..+..+.. ..+..||.+ ++++.+.+.+
T Consensus 247 ~v~~~~ad~Gia~D~DgDR~~v--vd~~~~~~g~~~~~d~l~aL~a~~ll~~~~~~~~~-~~~~~vV~~-v~sS~~i~~i 322 (487)
T cd05799 247 LAKKVGADLILATDPDADRLGV--AVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKL-PKNPVIVKT-IVSSELLRKI 322 (487)
T ss_pred HHHHhCCCEEEEeCCCCCeEEE--EEEcCCCCEEEECHHHHHHHHHHHHHHhHhhccCC-CCCcEEEEe-ehhHHHHHHH
Confidence 789999999999999999 8855 33477999999999999998874210000 002346755 5666556666
Q ss_pred HHhCCCeEEEecCchHHHHHHHHhC-----Cc----------c---------------------c----cc---------
Q psy232 206 KNTLNIDVIFTSTGVKHLHHEALKY-----DT----------I---------------------N----AD--------- 236 (299)
Q Consensus 206 ~~~~g~~v~~t~~G~k~i~~~~~~~-----~~----------i---------------------~----~~--------- 236 (299)
++.+|++|+|||||+++++++|.+. ++ + . ..
T Consensus 323 a~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~la~~~~~~~~Ls~l~~~ 402 (487)
T cd05799 323 AKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDE 402 (487)
T ss_pred HHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 6669999999999999999999863 21 0 0 00
Q ss_pred -----------c-cccC---Ch-hh----hhH----HHHhhhhcCC-ceEEEecCCCcceEEEEEEeCCH
Q psy232 237 -----------T-EIVE---PL-GM----QDS----INKSVAKFNN-ARSFVRPSGTEDIVRIYVEAETS 281 (299)
Q Consensus 237 -----------~-~~~~---~~-~~----~~~----iDGik~~~~~-gw~liRpSgTEp~iriy~Ea~~~ 281 (299)
+ .+-. +. .. ... .||+|+.+++ +|+|||||||||++|||+||.|.
T Consensus 403 l~~~y~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~~~DGvki~~~dg~WvliRpS~teP~~riy~Ea~~~ 472 (487)
T cd05799 403 LYEKYGYYKEKTISITFEGKEGPEKIKAIMDRLRNNPNVLTFYLEDGSRVTVRPSGTEPKIKFYIEVVGK 472 (487)
T ss_pred HHHHhCceEEeeeeEEEeCCCCHHHHHHHHHHHhccCCEEEEEEcCCEEEEEEcCCCCceEEEEEEeecc
Confidence 0 0101 10 11 111 1899999987 69999999999999999999994
No 35
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=1.2e-45 Score=361.73 Aligned_cols=265 Identities=16% Similarity=0.123 Sum_probs=188.7
Q ss_pred ceecCCCCC---CCCCceEEECCCCCCCCCcccc-------------------------------------------cHH
Q psy232 9 EEILNLYNK---SYSQDIYFDGANGNHNVNSRVF-------------------------------------------EES 42 (299)
Q Consensus 9 ~~iTaSHNP---~~~nGiK~~~~~G~~~~~~~~~-------------------------------------------~~~ 42 (299)
=|||||||| ++||||||++++|.++.++.+. ..+
T Consensus 122 ImITASHNP~~~~eyNGiK~~~~~G~~~~~~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 201 (579)
T PLN02307 122 FILTASHNPGGPEEDFGIKYNYESGQPAPESITDKIYGNTLTIKEYKMAEDIPDVDLSAVGVTKFGGPEDFDVEVIDPVE 201 (579)
T ss_pred EEEecCCCCCCCCCCCEEEEECCCCCcCCcHHHHHHHHHHHhhhhhhhcccccccchhhhcccccccccccceEEecCHH
Confidence 499999999 8999999999999887654221 135
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHH-HHcCCCceEE-EEccccCCCCCCCCCCCCCCCcc
Q psy232 43 EYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQ-KIIESKLKIE-VYNQDVTTQGKLNFQCGADFAKT 120 (299)
Q Consensus 43 ~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll-~~lg~~~~v~-~ln~~~d~~~~~n~~~g~~~p~~ 120 (299)
.|++++.+.++ ++.|+.....+++|||+||+||+++.+++++| +++|+ +++ .+|+.||| .|++ .+|++
T Consensus 202 ~Yi~~l~~~i~--~~~i~~~~~~~~lkVvvD~~hGag~~~~~~lL~~~lG~--~~~~~i~~~pDg-~Fp~-----~~PnP 271 (579)
T PLN02307 202 DYVKLMKSIFD--FELIKKLLSRPDFTFCFDAMHGVTGAYAKRIFVEELGA--PESSLLNCVPKE-DFGG-----GHPDP 271 (579)
T ss_pred HHHHHHHHhhC--HHHHhhhcccCCCeEEEeCCCCccHHHHHHHHHHhcCC--CceeeecCccCC-CCCC-----CCCCC
Confidence 56666655543 22221000024899999999999999999999 79999 876 89999998 4333 23322
Q ss_pred cccCCcccccc-------------CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHh--hcCCCc
Q psy232 121 KKIVPTGVNIK-------------NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIA--RCNLKD 185 (299)
Q Consensus 121 ~~~~~~~l~~~-------------~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~--~~~~~~ 185 (299)
.++.+..+ .+||+|+|+||||||+++ + ++|. .++++.++++++.+++.... +.+
T Consensus 272 ---~~~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~v--v-~~g~--~i~~d~~l~ll~~~~l~~~~~~~~g--- 340 (579)
T PLN02307 272 ---NLTYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMI--L-GKRF--FVTPSDSVAIIAANAQEAIPYFSGG--- 340 (579)
T ss_pred ---CHHHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEE--E-ecCc--EEcCChHHHHHHHHHHHhhhhhhcC---
Confidence 22222111 249999999999999988 7 6784 49999999999998876420 011
Q ss_pred ccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHHHHHHHHhCCcc--------------------------------
Q psy232 186 KVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDTI-------------------------------- 233 (299)
Q Consensus 186 ~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~~~i-------------------------------- 233 (299)
...||.|.+||..+.+ +++.+|+++++|+||||||.++|.+.+++
T Consensus 341 --~~~VV~tv~sS~~l~~-ia~~~G~~~~~t~vGfk~I~~~m~e~~~~~GgEeSgG~~~~~~~dkDGi~aallllel~a~ 417 (579)
T PLN02307 341 --LKGVARSMPTSAALDV-VAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAH 417 (579)
T ss_pred --CcEEEEeChhhHHHHH-HHHHcCCeEEEcCchHHHHHHHHHhCCcEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 1158877666666554 45558999999999999999999987641
Q ss_pred c-cc----ccc------c-------------------CC-hh-------hh-----------------------------
Q psy232 234 N-AD----TEI------V-------------------EP-LG-------MQ----------------------------- 246 (299)
Q Consensus 234 ~-~~----~~~------~-------------------~~-~~-------~~----------------------------- 246 (299)
. +. .++ + +. .. +.
T Consensus 418 ~~~~~~~~~~~~tl~~~l~el~~~~G~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~v~~~~d~~~~~~~ 497 (579)
T PLN02307 418 KNKDVLPGGKLVTVEDIVREHWATYGRNFYSRYDYENVDSEAANKMMDHLRDLVNKSKKGIKYGVYTLAFADDFEYTDPV 497 (579)
T ss_pred hCCCcccccCcCCHHHHHHHHHHHhCCCeeeecceecCCHHHHHHHHHHHhcccccccCCCEecceEEEEEeeceeecCC
Confidence 0 10 000 0 00 00 00
Q ss_pred ----hHHHHhhhhcCC-ceEEEecCCCc---ceEEEEEEe-CCH--HHHHHHHHHHHHHHHh
Q psy232 247 ----DSINKSVAKFNN-ARSFVRPSGTE---DIVRIYVEA-ETS--EDVNALTEEIQQVVKT 297 (299)
Q Consensus 247 ----~~iDGik~~~~~-gw~liRpSgTE---p~iriy~Ea-~~~--~~~~~l~~~~~~~v~~ 297 (299)
...||+|+.+++ +|+++|||||| |++|+|+|+ .++ +.+.++++..+.++..
T Consensus 498 ~~~~~~~dglk~~~~dg~wi~~RpSGTE~~~PkiK~Y~e~~~~~~~~~~~~~~~~~~~~~~~ 559 (579)
T PLN02307 498 DGSVSSKQGIRFLFTDGSRIIFRLSGTGSAGATIRLYIEQYEKDPSKHGRDAQEALKPLIDV 559 (579)
T ss_pred CCCCCccCeEEEEEcCCeEEEEEcCCCCCCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 125888888875 59999999999 999999998 777 8888888888877654
No 36
>KOG2537|consensus
Probab=100.00 E-value=8.7e-44 Score=329.31 Aligned_cols=255 Identities=44% Similarity=0.739 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcc
Q psy232 41 ESEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKT 120 (299)
Q Consensus 41 ~~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~ 120 (299)
.+.|++.+...|..+ ..++..++....|+.|||+||+|+..+..+.....-.+++..+|...| ++.||..||++|...
T Consensus 186 ~~~Y~~~ls~af~~l-~~~~~~~~~~~~k~~VD~ANGvG~~klk~l~~i~~~~l~vEivNd~~d-pelLN~~CGADFVkt 263 (539)
T KOG2537|consen 186 EEGYYSKLSKAFNEL-RNITQESGDEVSKLIVDCANGVGAPKLKELLGIDSGLLNVEVVNDGID-PGLLNNGCGADFVKT 263 (539)
T ss_pred cccHHHHHHHHHHHh-hhhccccCCccceEEEECccccchHHHHHHhccCCCcCceEEEcCCCC-hhhhccccccchhhc
Confidence 467889998888863 233322334567999999999999999988874433368999999888 499999999999998
Q ss_pred cccCCccccccCCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChh
Q psy232 121 KKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGN 200 (299)
Q Consensus 121 ~~~~~~~l~~~~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~ 200 (299)
.+..|..++.....-.+..|||||||+++|++++++++++|+||++..+++.|+.....+.+ ..++.++|+|.++|++
T Consensus 264 ~QkpP~~~~~~~~~~~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~--~~l~~GvVqtaYaNga 341 (539)
T KOG2537|consen 264 KQKPPKGLSPIKANTRCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIE--LSLRLGVVQTAYANGA 341 (539)
T ss_pred cccCCCCCCCCCCCCceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHHHHHhh--ccceeeeEEEEeecCc
Confidence 77778776541233489999999999999999999989999999999999999977643322 2367899999999999
Q ss_pred HHHHHHHhCCCeEEEecCchHHHHHHHHhCCc-c----------------------------------------------
Q psy232 201 CTNYIKNTLNIDVIFTSTGVKHLHHEALKYDT-I---------------------------------------------- 233 (299)
Q Consensus 201 ~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~~~-i---------------------------------------------- 233 (299)
.++++....++.|+.+++|.|+++.++.++++ |
T Consensus 342 st~yl~~~l~~~vv~v~tGvKhlh~~A~efDiGiyFEaNGHGti~FS~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Lin 421 (539)
T KOG2537|consen 342 STDYLKETLKFPVVCVPTGVKHLHHAAAEFDIGIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLIN 421 (539)
T ss_pred cHhhhhhhcCCceEEeccccchHHHHHHhhcceeEEeccCccceeehHHHHHhhhhhhhCCCccchHHHHHHHHHHhhhc
Confidence 99999998999999999999999999999875 1
Q ss_pred ----------------------------------------------------cccccccCChhhhhHHHHhhhhcCCceE
Q psy232 234 ----------------------------------------------------NADTEIVEPLGMQDSINKSVAKFNNARS 261 (299)
Q Consensus 234 ----------------------------------------------------~~~~~~~~~~~~~~~iDGik~~~~~gw~ 261 (299)
+.+|++++|..+|+.||-....+..||.
T Consensus 422 q~vGDAisd~llv~~il~~~~~s~~~w~e~y~dlPnrq~Kv~v~Dr~i~~ttdaer~~v~P~glQ~~Ida~vaky~~gRa 501 (539)
T KOG2537|consen 422 QTVGDAISDMLAVEAILAHKGWSVQDWDELYRDLPNRQLKVKVPDRSIIKTTDAERQLVKPVGLQDKIDALVAKYKRGRS 501 (539)
T ss_pred ccchhhhcchHHHHHHHHhcCCCHHHHHHHhcCCccceEEEEeccceeeechhhhhhcCCcHHHHHHHHHHHhhccCCce
Confidence 1334566688899999999999999999
Q ss_pred EEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 262 FVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 262 liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
||||||||.++||||||.|++.+++|+.++.++|.++|
T Consensus 502 FvR~SGTEdvVRVYAEa~t~~~~d~l~~~v~~~v~~~~ 539 (539)
T KOG2537|consen 502 FVRPSGTEDVVRVYAEASTKEDADQLALEVAQLVLKLA 539 (539)
T ss_pred EEeccCccceEEEEEecCchhhHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999876
No 37
>KOG1220|consensus
Probab=100.00 E-value=1.5e-37 Score=292.55 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=152.4
Q ss_pred CCCceecCCCCCCCCCceEEECCCCCCCCCcccccHHH----------------------------------HHHHHHHH
Q psy232 6 LSYEEILNLYNKSYSQDIYFDGANGNHNVNSRVFEESE----------------------------------YFTHFGNA 51 (299)
Q Consensus 6 ~~~~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~~~~~----------------------------------Y~~~l~~~ 51 (299)
.-.=||||||||.+|||+|||++||+|+.+.....+.. |++.+.+.
T Consensus 155 dAgIMiTASHnPk~dNGyKvYwsNG~qii~PhD~~I~~~~~~nl~p~~s~wd~slv~s~~l~~d~~~~~~~~~~e~~k~~ 234 (607)
T KOG1220|consen 155 DAGIMITASHNPKEDNGYKVYWSNGAQIISPHDEKISDSIEANLEPRLSSWDDSLVKSHPLLHDILAVIIPPYFEVYKEL 234 (607)
T ss_pred CceEEEeccCCccccCCEEEEecCCccccCchhHHHHHHHHhccCcccchhhhhHHhcchhhcCchhccchHHHHHHHhc
Confidence 34569999999999999999999999987665433333 33333332
Q ss_pred HHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceE--EEEccccCCCCCCCCCCCCCCCcccccCCcccc
Q psy232 52 YLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKI--EVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVN 129 (299)
Q Consensus 52 ~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v--~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~ 129 (299)
+.... ...+...++++|++++||+|+.++.++|+.+|+. .+ +...++||| .||..+-|+|++..
T Consensus 235 l~~~~---~e~n~~s~~~fVyta~hGvG~~F~~~al~~~~~~-~~~~v~eq~~Pdp----------~FPt~~~PNPEek~ 300 (607)
T KOG1220|consen 235 LPCFH---REANPLSGLKFVYTAGHGVGGFFVKKALEKLGLD-TMISVPEQLEPDP----------MFPTVPFPNPEEKG 300 (607)
T ss_pred CccHh---hhhccCCCceEEEecCCCccHHHHHHHHHHhCCC-ccccchhhcCCCC----------CCCCCCCCCcchHH
Confidence 22100 1113467899999999999999999999999994 32 344577776 56766667787744
Q ss_pred cc---------CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceE-----Eee
Q psy232 130 IK---------NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVI-----QTA 195 (299)
Q Consensus 130 ~~---------~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv-----~t~ 195 (299)
.+ +++|+++|+|||+||++++.. .+|+|+.++||+++||+++++++.. ++ ...+ ...
T Consensus 301 aL~ls~~~a~~n~~dlvlanDpDaDR~avaek-~~G~wr~fnGNElgALl~~~~le~~--k~------~~~~~~~~ml~s 371 (607)
T KOG1220|consen 301 ALDLSIKAALKNSADLVLANDPDADRFAVAEK-VSGEWRVFNGNELGALLSWWVLEEH--KG------STPVQDVSMLNS 371 (607)
T ss_pred HHHHHHHHHhccCCcEEEecCCCcchhhheec-cCCcceeccchHHHHHHHHHHHHhc--cC------CCccchhhhhhh
Confidence 33 789999999999999999544 5799999999999999999999986 22 1222 244
Q ss_pred eeChhHHHHHHHhCCCeEEEecCchHHHHHHHHh
Q psy232 196 YTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALK 229 (299)
Q Consensus 196 ~ss~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~ 229 (299)
.+|+.+.+.|++..|++.++|.|||||+.+++.+
T Consensus 372 ~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAie 405 (607)
T KOG1220|consen 372 TVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIE 405 (607)
T ss_pred HHHHHHHHHHHHHhCceeeeccccchhhhHHHHH
Confidence 5566778899988899999999999999977665
No 38
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-33 Score=253.95 Aligned_cols=266 Identities=16% Similarity=0.106 Sum_probs=193.0
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcc-----------------------------------cccHHHHHHHHHHHHH
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSR-----------------------------------VFEESEYFTHFGNAYL 53 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~-----------------------------------~~~~~~Y~~~l~~~~~ 53 (299)
=-+|+|||||++-|||..-+||+|.+... .|....|.+.|.+.||
T Consensus 117 IvlT~SHNPP~D~GIKYN~~nGGPA~~~~T~aI~~ra~~~~k~~~~~v~r~~~~~~~~~~~v~~~D~v~~Yv~~l~~i~D 196 (524)
T COG0033 117 IVLTPSHNPPEDGGIKYNPPNGGPAPEKVTDAIEARANDLYKIGLLDVKRIGLDQAYGSLTVKIIDPVKDYVELLEEIFD 196 (524)
T ss_pred EEEcCCCCCcccCCcccCCCCCCCCChHHHHHHHHHHHHHHHhhhcCccccchhhhcCcceeeeecchHHHHHHHHHhhc
Confidence 46899999999999999999999987643 1567889999999999
Q ss_pred HhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCcc----cc
Q psy232 54 SYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTG----VN 129 (299)
Q Consensus 54 ~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~----l~ 129 (299)
++.|+ ....++++|+++|+++.++.++++.-.. ....+|...| +.++|++.+|.+.-..-.+ +.
T Consensus 197 --~daIr----~~~~~l~~D~l~g~t~~Y~~~I~e~~~~--~~t~v~~~~~----p~~~F~~l~~D~ni~~~~ss~~~ma 264 (524)
T COG0033 197 --FDAIR----KAGLRLGFDPLGGVTGPYWKAIAEKYLL--NLTGVNQNVD----PTPDFMGLDPDGNIRMDCSSPCAMA 264 (524)
T ss_pred --HHHHH----HHHhhcccccccCccchhHHHHHHHhcC--CchhhccCcc----cCccccCCCCCCCEeEecCcHHHHH
Confidence 56665 3557799999999999999999965444 3344443333 3457787777632222111 11
Q ss_pred cc----CCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCC--ceEEeeeeChhHHH
Q psy232 130 IK----NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNI--KVIQTAYTNGNCTN 203 (299)
Q Consensus 130 ~~----~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~--~vv~t~~ss~~~~~ 203 (299)
.+ .+.|+|++.||||||-++ +....- .++++..+|+++.|+..+. +. +++ +|..|.+||++ ++
T Consensus 265 ~l~~~~d~~d~~aanD~DgDR~~I--v~~~~~--~~nPn~~lAv~~~y~~~~~--~~----~~g~~~v~ktl~sS~~-iD 333 (524)
T COG0033 265 GLLRLRDKYDFAAANDGDGDRHGI--VTPGAG--LMNPNHSLAVAIEYLFLHR--PY----WGGIVAVGKTLVSSAA-ID 333 (524)
T ss_pred HhhccccccccccccCCCccccee--ecCCCc--ccCchHHHHHHHHHHHhCC--Cc----cccceeeeeccccHHH-HH
Confidence 11 579999999999999988 888653 4999999999999988774 22 222 56667565555 56
Q ss_pred HHHHhCCCeEEEecCchHHHHHHHHhCCc---------------------------c-----------------------
Q psy232 204 YIKNTLNIDVIFTSTGVKHLHHEALKYDT---------------------------I----------------------- 233 (299)
Q Consensus 204 ~i~~~~g~~v~~t~~G~k~i~~~~~~~~~---------------------------i----------------------- 233 (299)
++.+.+|.++++|||||||....+....+ |
T Consensus 334 RV~~~lGr~lyEvPvG~K~F~~~l~~g~~~~~GEESaGa~~lRek~g~Wa~~~~~~Ilall~aei~a~t~~~~~~~y~~~ 413 (524)
T COG0033 334 RVVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEESAGASFLREKGGVWATDKDGNILALLAAEITAVTGKIPQEHYAEL 413 (524)
T ss_pred HHHHHhCCceEEcCCcceeeeccccccceeecccccccccceecCCCceeeechhHHHHHHhhhchhhhccCHHHHHHHH
Confidence 66666999999999999999887664221 0
Q ss_pred ------------cc------c---ccccC-------------------ChhhhhHHHHhhhhcCCceEEEecCCCcceEE
Q psy232 234 ------------NA------D---TEIVE-------------------PLGMQDSINKSVAKFNNARSFVRPSGTEDIVR 273 (299)
Q Consensus 234 ------------~~------~---~~~~~-------------------~~~~~~~iDGik~~~~~gw~liRpSgTEp~ir 273 (299)
+. + |.+.. .+...+.+-|+|+.+++||+-.||||||..+|
T Consensus 414 ~r~~~~~~Yervda~aa~~~~a~L~~ls~~~v~~t~l~g~~~~a~~~~~~Gn~s~~~GLkV~~~ng~fa~R~SGT~~t~k 493 (524)
T COG0033 414 GRNFGRPDYERVDAEAANAQKARLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAIGGLKVTTENGWFAARPSGTEATYK 493 (524)
T ss_pred HHHhCcccHHHhcCchhHHHHHHHHhhCcccCCccccCCCcchhcccCCCCchhhcCceEEEeeCcEEEEecCCcchhhh
Confidence 00 0 00100 12346778899999999999999999999999
Q ss_pred EEEEeC-CHHHHHHHHHHHHHHHHh
Q psy232 274 IYVEAE-TSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 274 iy~Ea~-~~~~~~~l~~~~~~~v~~ 297 (299)
||+|+- ..+...+...+++.+|.+
T Consensus 494 iY~Esf~~~~h~~~~q~~~~~iV~~ 518 (524)
T COG0033 494 IYAESFEGDEHLKQIQKEAAEIVSE 518 (524)
T ss_pred hhhhhhCChHHHHHHHHHHHHHHHH
Confidence 999984 444556666666666544
No 39
>KOG0625|consensus
Probab=99.95 E-value=1.3e-27 Score=216.81 Aligned_cols=201 Identities=14% Similarity=0.127 Sum_probs=154.6
Q ss_pred eecCCCCCC---CCCceEEECCCCCCCCCcc----------------------------------------cccHHHHHH
Q psy232 10 EILNLYNKS---YSQDIYFDGANGNHNVNSR----------------------------------------VFEESEYFT 46 (299)
Q Consensus 10 ~iTaSHNP~---~~nGiK~~~~~G~~~~~~~----------------------------------------~~~~~~Y~~ 46 (299)
..||||||. .+-||||.-+||+|.+... .|..+.|++
T Consensus 114 ILTASHnPGGP~~DfGIKfN~~NGgPAPesvTdkIy~itk~i~eyki~~~~~iDls~vG~~~~~gpf~VeviDpv~~Yv~ 193 (558)
T KOG0625|consen 114 ILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKIDLSTVGKTSFDGPFTVEVIDPVKDYVN 193 (558)
T ss_pred EEEeccCCCCCCCccceEEecCCCCCChHHHHHHHHHhhhhhhhceeecCcccchhhhccccccCCeeEEEeccHHHHHH
Confidence 579999997 8899999999999987532 156789999
Q ss_pred HHHHHHHHhhhhhhcc-CCCCCCeEEEcCCCCCcHHHHHHHH-HHcCCCceEEEEccccCCCCCCCCCCCCCCCccccc-
Q psy232 47 HFGNAYLSYQKFLLTD-NKSYSQDIYFDGANGVGGVKIKELQ-KIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKI- 123 (299)
Q Consensus 47 ~l~~~~~~~~~~i~~~-~~~~~~kIvvD~~nG~~~~~~~~ll-~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~- 123 (299)
.+.+.|| ++.|++- .+.+++|+.+|+|||+++.+...+| ++||++ .-..+||.|-+ +||+.+|.+.-.
T Consensus 194 lmk~IFD--F~~ik~lls~~~~~k~~~DamhGvtGpY~~~IfvdelGa~-~~~~~n~~Pl~------DFGG~HPDPNLTY 264 (558)
T KOG0625|consen 194 LMKEIFD--FDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAP-ASSLQNCVPLE------DFGGGHPDPNLTY 264 (558)
T ss_pred HHHHHhC--HHHHHHHhcCCCCceEEEeecccccchhhhHHHHhhhCCC-hHHhccCeecc------ccCCCCCCCchhh
Confidence 9999999 5555432 3458899999999999999998887 999995 45567888764 799999873211
Q ss_pred ---CCccccccCCCcEEEEeCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHH--HhhcCCCcccCCceEEeeeeC
Q psy232 124 ---VPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINEL--IARCNLKDKVNIKVIQTAYTN 198 (299)
Q Consensus 124 ---~~~~l~~~~~adlGia~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~--~~~~~~~~~~~~~vv~t~~ss 198 (299)
+++.+.. .+.|+|.||||||||-++ .-.+|.| +++...+|++|.++-.. .++.+ -.++..+..||
T Consensus 265 Ak~LV~rv~~-~~~~fGAA~DGDGDRNMI--lG~~~fF--VtPsDSvAiIA~na~~IPYF~~~G-----v~GfARSmPTs 334 (558)
T KOG0625|consen 265 AKDLVDRVDR-GEIDFGAAFDGDGDRNMI--LGKNGFF--VTPSDSVAIIAANAEAIPYFRKQG-----VKGFARSMPTS 334 (558)
T ss_pred HHHHHHHhcc-CCCcccccccCCCcceee--eccCcee--eccchhHHHHHhcchhcchhhhcC-----cchhhhcCCch
Confidence 2222223 789999999999999988 8888866 99999999999987544 11112 12455454444
Q ss_pred hhHHHHHHHhCCCeEEEecCchHHHHHHHHhC
Q psy232 199 GNCTNYIKNTLNIDVIFTSTGVKHLHHEALKY 230 (299)
Q Consensus 199 ~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~ 230 (299)
+ ..+++++..|.++++||||+|+..+.|...
T Consensus 335 ~-AlDrVak~~gl~~yEvPTGWKfF~nLmDAg 365 (558)
T KOG0625|consen 335 G-ALDRVAKKLGLPVYEVPTGWKFFGNLMDAG 365 (558)
T ss_pred h-HHHHHHHHcCCceEEcCchHHHHHhhhccc
Confidence 4 457777779999999999999999998753
No 40
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.81 E-value=8.5e-20 Score=141.28 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCccc
Q psy232 42 SEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTK 121 (299)
Q Consensus 42 ~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~ 121 (299)
+.|++.+.+.|+. .+.+. .+++||+|||+||+++.+++.+|++||+ +++.+|+.+|+ .+++ + ..|.
T Consensus 1 e~Y~~~l~~~~~~-~~~~~----~~~~kivvD~~~G~~~~~~~~ll~~lg~--~~~~~n~~~d~-~f~~--~--~~p~-- 66 (104)
T PF02879_consen 1 EAYIESLLSFIDI-LEAIK----KSGLKIVVDCMNGAGSDILPRLLERLGC--DVIELNCDPDP-DFPN--Q--HAPN-- 66 (104)
T ss_dssp HHHHHHHHHTSCH-HHHHH----HTTCEEEEE-TTSTTHHHHHHHHHHTTC--EEEEESSS-ST-TGTT--T--STSS--
T ss_pred ChHHHHHhhhccc-hhhcc----cCCCEEEEECCCCHHHHHHHHHHHHcCC--cEEEEeccccc-cccc--c--cccc--
Confidence 5799999999882 23333 4789999999999999999999999999 99999999997 3322 0 2222
Q ss_pred ccCCcccccc------CCCcEEEEeCCCCCeeEEeeeCCCC
Q psy232 122 KIVPTGVNIK------NLNNKYLSVDGDADRIIYWYPNEDN 156 (299)
Q Consensus 122 ~~~~~~l~~~------~~adlGia~DgDgDR~~~~~vd~~G 156 (299)
|..+++..+ .++|+|++|||||||+++ +|++|
T Consensus 67 -p~~~~l~~~~~~v~~~~ad~g~~~DgDaDRl~~--vd~~G 104 (104)
T PF02879_consen 67 -PEEESLQRLIKIVRESGADLGIAFDGDADRLGV--VDENG 104 (104)
T ss_dssp -TSTTTTHHHHHHHHHSTTSEEEEE-TTSSBEEE--EETTS
T ss_pred -cccchhHHHHHHhhccCceEEEEECCcCceeEE--ECCCC
Confidence 222233322 789999999999999999 99987
No 41
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.57 E-value=2.7e-15 Score=108.47 Aligned_cols=50 Identities=38% Similarity=0.658 Sum_probs=46.7
Q ss_pred hHHHHhhhhcCCceEE-EecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHH
Q psy232 247 DSINKSVAKFNNARSF-VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296 (299)
Q Consensus 247 ~~iDGik~~~~~gw~l-iRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~ 296 (299)
+..||+++.+++||++ ||||||||++|||+||.|++.++++.+++.+.|+
T Consensus 23 ~~~~~~~~~~~dG~~l~vR~SgTEP~iRv~~Ea~~~~~~~~~~~~i~~~ik 73 (73)
T PF00408_consen 23 STIDGIKILFEDGWRLLVRPSGTEPKIRVYVEAPDEEELEEIAEEIAEAIK 73 (73)
T ss_dssp EHHHCEEEEETTEEEEEEEEESSSSEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccceEEEECCCceEEEEECCCCCceEEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 3789999999999888 9999999999999999999999999999998875
No 42
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=98.76 E-value=2.4e-08 Score=78.20 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEecCchHHHHHHHHhCCc
Q psy232 162 DGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDT 232 (299)
Q Consensus 162 ~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t~~G~k~i~~~~~~~~~ 232 (299)
+||++++|+++++++.. +++ ..||.+++||..+.+.+++ +|+++++|+||++|+.+.|.+.++
T Consensus 1 ~gd~~~al~a~~~l~~~-~~~------~~vv~~v~sS~~~~~~~~~-~g~~~~~t~vG~~~i~~~~~~~~~ 63 (113)
T PF02880_consen 1 NGDELLALLADYLLEEH-KPG------GTVVVTVVSSRALDKIAEK-HGGKVIRTKVGFKNIAEKMREENA 63 (113)
T ss_dssp HHHHHHHHHHHHHHHCH-TTT------EEEEEETTS-THHHHHHHH-TTSEEEEESSSHHHHHHHHHHTTE
T ss_pred CcHHHHHHHHHHHHHhC-CCC------CEEEEeCHHHHHHHHHHHH-CCCEEEEecCCcHHHHHHHhhhce
Confidence 58999999999998863 111 2588777777766666665 899999999999999999999886
No 43
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=98.67 E-value=5.3e-09 Score=84.80 Aligned_cols=39 Identities=18% Similarity=0.007 Sum_probs=28.4
Q ss_pred ceecCCCCCCCCCceEEECCCCCCCCCcccccHHHHHHH
Q psy232 9 EEILNLYNKSYSQDIYFDGANGNHNVNSRVFEESEYFTH 47 (299)
Q Consensus 9 ~~iTaSHNP~~~nGiK~~~~~G~~~~~~~~~~~~~Y~~~ 47 (299)
-||||||||+.||||||++++|.+++++.+..++.+++.
T Consensus 95 i~iTaShnp~~~ngik~~~~~G~~~~~~~~~~I~~~~~~ 133 (137)
T PF02878_consen 95 IMITASHNPPGYNGIKFFDANGGPISPEEERKIEQIIER 133 (137)
T ss_dssp EEE--TTS-TTEEEEEEEETTSSB--HHHHHHHHHHHHH
T ss_pred eEEEecCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHh
Confidence 499999999999999999999999998776666655544
No 44
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=75.29 E-value=5.5 Score=26.87 Aligned_cols=30 Identities=33% Similarity=0.334 Sum_probs=25.8
Q ss_pred ceEEEE-EEeCCHHHHHHHHHHHHHHHHhhC
Q psy232 270 DIVRIY-VEAETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 270 p~iriy-~Ea~~~~~~~~l~~~~~~~v~~~~ 299 (299)
|+++|+ .++.|.+..++|.+.+.+.+.+.|
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~ 32 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETL 32 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 899999 678899999999999998876643
No 45
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=75.10 E-value=6.1 Score=26.99 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=25.6
Q ss_pred ceEEEE-EEeCCHHHHHHHHHHHHHHHHhh
Q psy232 270 DIVRIY-VEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 270 p~iriy-~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
|+++|+ .++.|.++.++|.+.+.+.+.+.
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~~ 31 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISAT 31 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999 58999999999999999887654
No 46
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=74.48 E-value=8.2 Score=28.62 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=35.2
Q ss_pred hhhhcCCceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHhh
Q psy232 252 SVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 252 ik~~~~~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
-++.|+.|-+.+++++ ..+.+.+||++.+.+..+..-+.+.+..|
T Consensus 34 g~i~f~~G~~~l~a~~--~~L~l~vea~~~~~L~~~~~vv~~HL~rF 78 (89)
T PF09981_consen 34 GRITFPFGTCTLSAEP--DALTLRVEAPDAEALARLEDVVARHLERF 78 (89)
T ss_dssp EEEE-SSS-EEEEEET--TEEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeCCEEEEEEeCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 3567888888888855 56778999999999999998888888765
No 47
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=74.12 E-value=6 Score=26.18 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=25.0
Q ss_pred ceEEEE-EEeCCHHHHHHHHHHHHHHHHhh
Q psy232 270 DIVRIY-VEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 270 p~iriy-~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
|+++|+ .++.|.++.++|.+.+.+.+.+.
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~ 30 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEI 30 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 789998 67889999999999999887654
No 48
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=72.49 E-value=7.7 Score=26.23 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=25.5
Q ss_pred ceEEEEE-EeCCHHHHHHHHHHHHHHHHhh
Q psy232 270 DIVRIYV-EAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 270 p~iriy~-Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
|+++|+. ++.|.++.++|.+.+.+.+.+.
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~~ 31 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSRI 31 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899988 7899999999999999887654
No 49
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=68.46 E-value=9.6 Score=25.57 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.2
Q ss_pred ceEEEE-EEeCCHHHHHHHHHHHHHHHHhh
Q psy232 270 DIVRIY-VEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 270 p~iriy-~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
|+++|. .++.|.++.++|++.+.+.+.+.
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 889998 58899999999999999887654
No 50
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=54.98 E-value=31 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=25.6
Q ss_pred CcceEEEEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 268 TEDIVRIYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 268 TEp~iriy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
.+|++++-+|+.+.....+|.+.+.++.++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~e 31 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEE 31 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhc
Confidence 379999999999999999999999888754
No 51
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=53.43 E-value=28 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=27.0
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQ 292 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~ 292 (299)
.||+--+++| -|+|++|+++++ ++++++.+.
T Consensus 33 ~G~V~N~~DG---sVeiva~G~~~~-v~~~~~~l~ 63 (92)
T COG1254 33 TGWVKNLDDG---SVEIVAEGPDEA-VEKFIEWLR 63 (92)
T ss_pred EEEEEECCCC---eEEEEEEcCHHH-HHHHHHHHH
Confidence 6999999999 489999999988 888887765
No 52
>PF14028 SpaB_C: SpaB C-terminal domain
Probab=53.09 E-value=30 Score=30.85 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=26.1
Q ss_pred HHHHhhhhc-CCceEEEecCCCcceEEEEEEeCCHH
Q psy232 248 SINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSE 282 (299)
Q Consensus 248 ~iDGik~~~-~~gw~liRpSgTEp~iriy~Ea~~~~ 282 (299)
.++.++-.- -+.|.+||=....|.+|+.+-+.+.+
T Consensus 26 l~~~l~~~g~i~~wFFiRY~d~gpHLRLR~~~~~~~ 61 (283)
T PF14028_consen 26 LLDELIEAGLIDRWFFIRYWDPGPHLRLRFRGSPDA 61 (283)
T ss_pred HHHHHHhCCCccceEEEecCCCCCeEEEEEECCCcc
Confidence 344443322 25799999999999999999998654
No 53
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=52.49 E-value=41 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCceEEEecCCCcceEEEEEEeCCHHH-HHHHHHHHHHHHHh
Q psy232 257 NNARSFVRPSGTEDIVRIYVEAETSED-VNALTEEIQQVVKT 297 (299)
Q Consensus 257 ~~gw~liRpSgTEp~iriy~Ea~~~~~-~~~l~~~~~~~v~~ 297 (299)
++||+.+--.+.+ ||++|+|.+. ++++++.+.+-.+.
T Consensus 15 ~dg~~~~~l~~ld----i~~~g~T~eeA~~~lie~l~dYAed 52 (89)
T PF12909_consen 15 DDGSITVSLPELD----IYANGPTLEEAIEDLIEDLRDYAED 52 (89)
T ss_dssp ETTEEEEEECCGT----EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCee----EEecCCCHHHHHHHHHHHHHHHHHH
Confidence 5799755555554 9999999854 55566655554443
No 54
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=49.59 E-value=16 Score=25.08 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=21.5
Q ss_pred CCCcceEEEEEEeCCHHHHHHHHHHHH
Q psy232 266 SGTEDIVRIYVEAETSEDVNALTEEIQ 292 (299)
Q Consensus 266 SgTEp~iriy~Ea~~~~~~~~l~~~~~ 292 (299)
.|+...++||+..++.++|.++++.+.
T Consensus 40 ~g~~~~~~v~V~~~d~~~A~~il~~~~ 66 (67)
T PF09413_consen 40 PGTGGQVEVYVPEEDYERAREILEEFE 66 (67)
T ss_dssp S--SSSEEEEEEGGGHHHHHHHHHHTT
T ss_pred cCccCceEEEECHHHHHHHHHHHHHhc
Confidence 455555999999999999999998765
No 55
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=44.55 E-value=50 Score=22.03 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=24.1
Q ss_pred ceEEEEEE--eCCHHHHHHHHHHHHHHHHhhC
Q psy232 270 DIVRIYVE--AETSEDVNALTEEIQQVVKTYL 299 (299)
Q Consensus 270 p~iriy~E--a~~~~~~~~l~~~~~~~v~~~~ 299 (299)
|+++|.+= +.|.++.++|.+.+.+.+.+.|
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~l 32 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETL 32 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 67777765 6899999999999998887653
No 56
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=42.06 E-value=44 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=21.3
Q ss_pred eCCCCCeeEEeeeCCCCCeeeechHHHHHHHHHHHHHHH
Q psy232 140 VDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELI 178 (299)
Q Consensus 140 ~DgDgDR~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~ 178 (299)
=|-||||+.+ -+.+++-|++.+|+....
T Consensus 47 EDE~gDRITV-----------RSDeEm~AMlsyy~~~~~ 74 (91)
T cd06395 47 EDEDGDRITV-----------RSDEEMKAMLSYYCSTVM 74 (91)
T ss_pred ccccCCeeEe-----------cchHHHHHHHHHHHHHHH
Confidence 3789999977 456788888888876553
No 57
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=41.86 E-value=1.5e+02 Score=22.19 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCcHHH-----HHHHHHHcCCC
Q psy232 68 QDIYFDGANGVGGVK-----IKELQKIIESK 93 (299)
Q Consensus 68 ~kIvvD~~nG~~~~~-----~~~ll~~lg~~ 93 (299)
.||++=|++|.|+-. +.++|+++|.+
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 589999999987764 67889999993
No 58
>PRK14434 acylphosphatase; Provisional
Probab=41.08 E-value=67 Score=23.86 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=26.5
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQ 293 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~ 293 (299)
.||+-=+++|| |.|.+|++..+.++++++.+.+
T Consensus 32 ~G~V~N~~dGs---Vei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 32 YGRVWNNDDGT---VEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred EEEEEECCCCC---EEEEEEcCCHHHHHHHHHHHhc
Confidence 39999889887 8899999876678887776653
No 59
>PF07288 DUF1447: Protein of unknown function (DUF1447); InterPro: IPR009907 This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.
Probab=35.57 E-value=43 Score=23.59 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=16.4
Q ss_pred eEEEEEEeCCHHHHHHHHHH
Q psy232 271 IVRIYVEAETSEDVNALTEE 290 (299)
Q Consensus 271 ~iriy~Ea~~~~~~~~l~~~ 290 (299)
---+|+||+|+..|+++++.
T Consensus 19 T~sLYvEa~s~~evR~~ve~ 38 (69)
T PF07288_consen 19 TQSLYVEAESEVEVRKLVED 38 (69)
T ss_pred ceEEEEEcCCHHHHHHHHHh
Confidence 34589999999999988764
No 60
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=34.93 E-value=82 Score=31.03 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=41.3
Q ss_pred CCCCCCCCCceEEECCCCCCCCCcccccHHHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHH
Q psy232 13 NLYNKSYSQDIYFDGANGNHNVNSRVFEESEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQ 87 (299)
Q Consensus 13 aSHNP~~~nGiK~~~~~G~~~~~~~~~~~~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll 87 (299)
+..|=-...|=+|.-+.|+..- .+-...|++.|.+.+... . .....++++|.+.|+|+- ...++
T Consensus 73 ~~qnWv~~~gd~~~FPgggt~F---~~Ga~~Yid~i~~~~~~~--~-----~~g~iR~~LDvGcG~aSF-~a~l~ 136 (506)
T PF03141_consen 73 ADQNWVRVEGDKFRFPGGGTMF---PHGADHYIDQIAEMIPLI--K-----WGGGIRTALDVGCGVASF-GAYLL 136 (506)
T ss_pred ccccceeecCCEEEeCCCCccc---cCCHHHHHHHHHHHhhcc--c-----cCCceEEEEeccceeehh-HHHHh
Confidence 4445555666666555555432 345568999988877621 1 146799999999999984 34344
No 61
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3.2.2.21 from EC. AlkA (3-methyladenine-DNA glycosylase II) is a base excision repair glycosylase from Escherichia coli. It removes a variety of alkylated bases from DNA, primarily by removing alkylation damage from duplex and single stranded DNA. AlkA flips a 1-azaribose abasic nucleotide out of DNA. This produces a 66 degrees bend in the DNA and a marked widening of the minor groove []. This groove is a large hydrophobic cleft, which is unusually rich in aromatic residues. AlkA recognises electron-deficient methylated bases through pi-donor/acceptor interactions involving the electron-rich aromatic cleft. AlkA is similar in fold and active site location to the bifunctional glycosylase/lyase endonuclease III. This suggests that the two may use similar mechanisms for base excision []. The structural analysis of the AlkA and AlkA-hypoxanthine structures indicate that free hypoxanthine binding in the active site may inhibit glycosylase activity [].; GO: 0003905 alkylbase DNA N-glycosylase activity; PDB: 1MPG_B 3CWS_D 3CW7_C 3CWA_B 3D4V_A 3CWT_C 3CWU_B 3OGD_A 3CVS_C 1PVS_A ....
Probab=34.34 E-value=55 Score=25.51 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=32.8
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
.||+-+++...+..++|.++..+...+..++..++++.
T Consensus 45 ~g~v~v~~~~~~~~l~v~~~~~~~~~l~~~~~rvRrlf 82 (116)
T PF06029_consen 45 PGWVSVRHDPEKNHLRVTLSLSDLRDLPAVIARVRRLF 82 (116)
T ss_dssp EEEEEEEEETTTTEEEEEE-GGGGGGHHHHHHHHHHHT
T ss_pred EEEEEEEEcCCCCEEEEEEEcccHHHHHHHHHHHHHHh
Confidence 48999999999999999999999888988888887653
No 62
>PRK00549 competence damage-inducible protein A; Provisional
Probab=34.16 E-value=1.5e+02 Score=28.41 Aligned_cols=88 Identities=8% Similarity=0.134 Sum_probs=53.7
Q ss_pred CCeEEEecCchHHHHHHHHhCCc---cc----c-c----ccc-c---CChhhhhHHHHhhhhcCCceEEEecCCCcceEE
Q psy232 210 NIDVIFTSTGVKHLHHEALKYDT---IN----A-D----TEI-V---EPLGMQDSINKSVAKFNNARSFVRPSGTEDIVR 273 (299)
Q Consensus 210 g~~v~~t~~G~k~i~~~~~~~~~---i~----~-~----~~~-~---~~~~~~~~iDGik~~~~~gw~liRpSgTEp~ir 273 (299)
+.+.+..--|+...++.|.+.-+ +. . . +.+ + .+..+.+.+..+...+++=-+-.+|+..+--+|
T Consensus 142 ~~~~i~~lPGvP~Em~~m~~~~v~p~l~~~~~~~~~~~~~~l~~~gi~Es~l~~~L~~l~~~~~~v~ig~~~~~~~~~vr 221 (414)
T PRK00549 142 DGKTYIVLPGPPSELKPMFEEYVVPYLSSAKGTGEVLYSRVLRFFGIGESQLATTLRDLIDNQTNPTIAPYAKDGEVTLR 221 (414)
T ss_pred CCEEEEEeCCCcHHHHHHHHHHhHHHHHhhcCCCceEEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECccCCEEEEE
Confidence 33456666677777776665432 11 0 0 001 0 122345555555333444445577888788899
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 274 IYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 274 iy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
+.+++.+++.++++.+.+.+.|++
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~i~~ 245 (414)
T PRK00549 222 LTAKARSEEEAEKLIDPLEEEIRD 245 (414)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988877776654
No 63
>PRK10632 transcriptional regulator; Provisional
Probab=33.87 E-value=1.5e+02 Score=26.66 Aligned_cols=73 Identities=4% Similarity=-0.115 Sum_probs=43.1
Q ss_pred CCceEEECCCCCCCCCccc-ccHHHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCC
Q psy232 20 SQDIYFDGANGNHNVNSRV-FEESEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIES 92 (299)
Q Consensus 20 ~nGiK~~~~~G~~~~~~~~-~~~~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~ 92 (299)
.-|.++|...|..+..... .....|.+.+.+.++.....+.+......-+|.|-+..+.+..+++.++..+-.
T Consensus 43 ~lg~~Lf~R~~r~i~lT~~G~~l~~~a~~il~~~~~~~~~~~~~~~~~~g~l~I~~~~~~~~~~l~~~l~~~~~ 116 (309)
T PRK10632 43 ELQVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLK 116 (309)
T ss_pred HhCCeeecccCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeccHHHHHHHHHHHHHHHHH
Confidence 4588899888877665332 344556666666555422222211111224577777777787888888877653
No 64
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=32.95 E-value=52 Score=26.66 Aligned_cols=30 Identities=13% Similarity=-0.034 Sum_probs=19.4
Q ss_pred eEEEcCCCCCcH--HHHHHHHHHcCCCceEEEEc
Q psy232 69 DIYFDGANGVGG--VKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 69 kIvvD~~nG~~~--~~~~~ll~~lg~~~~v~~ln 100 (299)
||++-+-|+.-. ..+...|++.|. +|+-+-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~--eV~D~G 33 (141)
T PRK12613 2 AIILGADAHGNALKELIKSFLQEEGY--DIIDVT 33 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCC--EEEEcC
Confidence 566666665433 246777888898 776554
No 65
>PRK14430 acylphosphatase; Provisional
Probab=31.74 E-value=1.2e+02 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=24.3
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQ 292 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~ 292 (299)
.||+-=+++|+ |.|++|++. +.+++++..+.
T Consensus 33 ~G~VrN~~dGs---Vei~~qG~~-~~i~~f~~~l~ 63 (92)
T PRK14430 33 GGWVRNRADGT---VEVMASGTV-RQLEALRAWME 63 (92)
T ss_pred EEEEEECCCCc---EEEEEEcCH-HHHHHHHHHHH
Confidence 59999999998 889999955 55677776653
No 66
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=31.42 E-value=1.8e+02 Score=25.99 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=47.8
Q ss_pred CeEEEecCchHHHHHHHHhCCcc--------ccc---cccc----CChhhhhHHHHhhhhcCCceEEEecCCCcc---eE
Q psy232 211 IDVIFTSTGVKHLHHEALKYDTI--------NAD---TEIV----EPLGMQDSINKSVAKFNNARSFVRPSGTED---IV 272 (299)
Q Consensus 211 ~~v~~t~~G~k~i~~~~~~~~~i--------~~~---~~~~----~~~~~~~~iDGik~~~~~gw~liRpSgTEp---~i 272 (299)
...+...-|+...++.|.+.-+. ... +.+. -+..+...++-+.-.+++=.+---|+..|- -+
T Consensus 144 ~~~v~~lPGvP~Em~~M~e~~~~~~l~~~~~~~~~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~ 223 (255)
T COG1058 144 GKNVYVLPGVPSEMKPMFENVLLPLLTGRFPSTKYYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEVRLREL 223 (255)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCceeccce
Confidence 44556666777777777664321 000 0010 012233333333322222233333444444 55
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 273 RIYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 273 riy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
+|.+++.+++.++.+++++.+.+..
T Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~i~~ 248 (255)
T COG1058 224 VIRAEARDEEEADALLRWLEGRLRA 248 (255)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999888754
No 67
>PRK14448 acylphosphatase; Provisional
Probab=31.13 E-value=1.1e+02 Score=22.65 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=24.5
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQ 292 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~ 292 (299)
.||+-=+|+|+ |.|++|++++ .++++++.+.
T Consensus 31 ~G~V~N~~dG~---Vei~~~G~~~-~v~~f~~~l~ 61 (90)
T PRK14448 31 KGYVKNRPDGS---VEVVAVGSDA-QIAAFRDWLQ 61 (90)
T ss_pred EEEEEECCCCC---EEEEEEeCHH-HHHHHHHHHH
Confidence 59998888887 8899999764 4777777664
No 68
>PRK13667 hypothetical protein; Provisional
Probab=30.97 E-value=55 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.2
Q ss_pred EEEEEeCCHHHHHHHHHH
Q psy232 273 RIYVEAETSEDVNALTEE 290 (299)
Q Consensus 273 riy~Ea~~~~~~~~l~~~ 290 (299)
-+|+||+++..++.+++.
T Consensus 22 sLYlEa~s~~e~R~~v~~ 39 (70)
T PRK13667 22 TLYLEADSEVEVRGRLKD 39 (70)
T ss_pred eEEEEcCCHHHHHHHHhh
Confidence 389999999988887764
No 69
>PRK14644 hypothetical protein; Provisional
Probab=30.88 E-value=1.1e+02 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=29.7
Q ss_pred EEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHH
Q psy232 261 SFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296 (299)
Q Consensus 261 ~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~ 296 (299)
+-+...+-.+++|||++..+.++.+.+-+.+..++.
T Consensus 18 ve~~~~~~~~~LrV~Idk~~iddC~~vSr~is~~LD 53 (136)
T PRK14644 18 IKIVKEDGDLFLEVILNSRDLKDIEELTKEISDFID 53 (136)
T ss_pred EEEEeCCCCEEEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 345678889999999999899999888888877764
No 70
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=30.52 E-value=65 Score=26.11 Aligned_cols=30 Identities=10% Similarity=-0.096 Sum_probs=19.8
Q ss_pred eEEEcCCCCCcHH--HHHHHHHHcCCCceEEEEc
Q psy232 69 DIYFDGANGVGGV--KIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 69 kIvvD~~nG~~~~--~~~~ll~~lg~~~~v~~ln 100 (299)
||++-+-|+.... .+...|+..|. +|+-+-
T Consensus 2 kI~IgsDh~G~~lK~~i~~~L~~~G~--eV~D~G 33 (141)
T TIGR01118 2 AIIIGSDLAGKRLKDVIKNFLVDNGF--EVIDVT 33 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCC--EEEEcC
Confidence 5777776754333 46777888898 776553
No 71
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.66 E-value=48 Score=24.08 Aligned_cols=29 Identities=38% Similarity=0.398 Sum_probs=19.4
Q ss_pred eEEEecCCCcceEEEEEEeCCHHHHHHHHHHH
Q psy232 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEI 291 (299)
Q Consensus 260 w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~ 291 (299)
-++.+|+..- .||+||.++..+.+.++-+
T Consensus 36 Si~~~~~lkG---yIyVEA~~~~~V~~ai~gi 64 (84)
T PF03439_consen 36 SIFAPDSLKG---YIYVEAERESDVKEAIRGI 64 (84)
T ss_dssp EEEE-TTSTS---EEEEEESSHHHHHHHHTT-
T ss_pred EEEEeCCCce---EEEEEeCCHHHHHHHHhcc
Confidence 4566665332 3899999999888877544
No 72
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=29.63 E-value=71 Score=26.10 Aligned_cols=71 Identities=6% Similarity=-0.076 Sum_probs=38.4
Q ss_pred eEEEcCCCCCcHH--HHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeCCCCCe
Q psy232 69 DIYFDGANGVGGV--KIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGDADR 146 (299)
Q Consensus 69 kIvvD~~nG~~~~--~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~DgDgDR 146 (299)
||++.+-|..-.. .+...|+..|. +|+-+-.. +. +-..+||.--.+.-+.+.. ..+|+||.+.|-|=-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~--eV~D~G~~-~~------~~~~dYpd~a~~va~~V~~-~~~~~GIliCGtGiG 71 (148)
T TIGR02133 2 RVVLGHDHAGFEYKEALWLDLAAHEP--EVCDVGVY-DA------DDDDDYPCFCIAAAEAVAR-DAADLGIVIGGSGNG 71 (148)
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCC--EEEECCCC-CC------CCCCCchHHHHHHHHHHhc-CCCceEEEEcCCChh
Confidence 6778777754332 36677888898 77655421 10 0001355422233333322 667777777777765
Q ss_pred eEE
Q psy232 147 IIY 149 (299)
Q Consensus 147 ~~~ 149 (299)
+.+
T Consensus 72 ~si 74 (148)
T TIGR02133 72 EAI 74 (148)
T ss_pred hee
Confidence 544
No 73
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=29.27 E-value=31 Score=24.09 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.8
Q ss_pred cCCceEEEecCCCcc
Q psy232 256 FNNARSFVRPSGTED 270 (299)
Q Consensus 256 ~~~gw~liRpSgTEp 270 (299)
.++|..|||+|.+.|
T Consensus 19 ~~~G~FLvR~s~~~~ 33 (77)
T PF00017_consen 19 KPDGTFLVRPSSSKP 33 (77)
T ss_dssp SSTTEEEEEEESSST
T ss_pred CCCCeEEEEeccccc
Confidence 458999999999866
No 74
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=29.20 E-value=1.3e+02 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=31.6
Q ss_pred ceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 259 ARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 259 gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
+-+=+.+.+...++.|.+++.|+++|.++++.+.+..
T Consensus 108 ~~i~v~~~~~t~ii~Isv~~~dp~~A~~ian~~~~~~ 144 (226)
T TIGR01006 108 SMVTVTNPTDTRLISISVKDKTPQDASKIANSLREVA 144 (226)
T ss_pred hceEEeCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 4577777777899999999999999999998887754
No 75
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.15 E-value=86 Score=29.51 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=27.0
Q ss_pred CCCeEEEcCCCCCc-HHHHHH---HHHHcCCCce--EEEEccccCC
Q psy232 66 YSQDIYFDGANGVG-GVKIKE---LQKIIESKLK--IEVYNQDVTT 105 (299)
Q Consensus 66 ~~~kIvvD~~nG~~-~~~~~~---ll~~lg~~~~--v~~ln~~~d~ 105 (299)
..+.|++|+.|++| +..++. ..-.+|+ + ++..|.+||.
T Consensus 270 ~~lPVi~DpsH~~G~sd~~~~~a~AAva~GA--dGliIE~H~~pd~ 313 (352)
T PRK13396 270 THLPIMIDPSHGTGKSEYVPSMAMAAIAAGT--DSLMIEVHPNPAK 313 (352)
T ss_pred hCCCEEECCcccCCcHHHHHHHHHHHHhhCC--CeEEEEecCCccc
Confidence 36899999999887 334333 3347788 8 7777776664
No 76
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.73 E-value=81 Score=28.38 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=27.1
Q ss_pred CCCeEEEcCCCCCcH----HHHHHHHHHcCCCce--EEEEccccCC
Q psy232 66 YSQDIYFDGANGVGG----VKIKELQKIIESKLK--IEVYNQDVTT 105 (299)
Q Consensus 66 ~~~kIvvD~~nG~~~----~~~~~ll~~lg~~~~--v~~ln~~~d~ 105 (299)
.+++|++|+.|+++. ..+...--.+|+ + ++..+..||.
T Consensus 195 ~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga--~Gl~iE~H~~pd~ 238 (266)
T PRK13398 195 SHLPIIVDPSHATGRRELVIPMAKAAIAAGA--DGLMIEVHPEPEK 238 (266)
T ss_pred cCCCEEEeCCCcccchhhHHHHHHHHHHcCC--CEEEEeccCCccc
Confidence 368899999999983 333444457898 8 6777766664
No 77
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=28.70 E-value=1.2e+02 Score=21.81 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=23.3
Q ss_pred ceEEEEE-Ee-CCHHHHHHHHHHHHHHHHhh
Q psy232 270 DIVRIYV-EA-ETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 270 p~iriy~-Ea-~~~~~~~~l~~~~~~~v~~~ 298 (299)
|.++|.. ++ .|.++.++|++.+.+.+.+.
T Consensus 2 P~I~I~~~~g~~s~EqK~~La~~iT~a~~~~ 32 (76)
T PRK01271 2 PHIDIKCFPRELDEEQKAALAADITDVIIRH 32 (76)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777766 44 69999999999999888654
No 78
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.44 E-value=1.4e+02 Score=27.78 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=32.8
Q ss_pred ceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHH
Q psy232 259 ARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296 (299)
Q Consensus 259 gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~ 296 (299)
.++-|.+.+..-++.|.+++.|++.+..+++.+.+..+
T Consensus 120 ~~v~v~~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~ 157 (362)
T TIGR01010 120 KRLSVDVDSVSGILTLNVTAFDAEEAQKINQRLLKEGE 157 (362)
T ss_pred hceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHH
Confidence 46888888888999999999999999999998866443
No 79
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=27.14 E-value=1.1e+02 Score=28.61 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=28.2
Q ss_pred CCCeEEEcCCCCCcH----HHHHHHHHHcCCCce--EEEEccccCC
Q psy232 66 YSQDIYFDGANGVGG----VKIKELQKIIESKLK--IEVYNQDVTT 105 (299)
Q Consensus 66 ~~~kIvvD~~nG~~~----~~~~~ll~~lg~~~~--v~~ln~~~d~ 105 (299)
..++|++|+.|+.|. ..++...-.+|+ + ++..+.+||.
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GA--dGliIE~H~~pd~ 304 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAVAAGA--DGLIVEVHPDPEK 304 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHHHhCC--CEEEEEecCCccc
Confidence 468999999999886 234455568899 8 7777776664
No 80
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=26.66 E-value=1.5e+02 Score=22.39 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCCCCeeEEeeeCCC-CCe-eeechHHHHHHHHHH
Q psy232 132 NLNNKYLSVDGDADRIIYWYPNED-NTI-HLLDGDRIAVLFAMY 173 (299)
Q Consensus 132 ~~adlGia~DgDgDR~~~~~vd~~-G~~-~~l~gd~~~~Lla~~ 173 (299)
.+..+=|.+|.|.+|+.+=++|.+ |+. +.+.+++++-|....
T Consensus 53 ~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 53 LNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp SS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 567799999999999988889964 764 778999999888665
No 81
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=26.55 E-value=1.1e+02 Score=27.29 Aligned_cols=73 Identities=4% Similarity=-0.213 Sum_probs=39.9
Q ss_pred CCceEEECCCCCCCCCcc-cccHHHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCC
Q psy232 20 SQDIYFDGANGNHNVNSR-VFEESEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIES 92 (299)
Q Consensus 20 ~nGiK~~~~~G~~~~~~~-~~~~~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~ 92 (299)
.-|.++|...|..+.... -...-.|...+.+.++...+.+........-.|-+-+.+..+...++.++..+..
T Consensus 43 ~lg~~LF~R~~r~~~lT~~G~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~~~~ 116 (300)
T PRK11074 43 WLAVPLFERRHRDVELTPAGEWFVKEARSVIKKMQETRRQCQQVANGWRGQLSIAVDNIVRPDRTRQLIVDFYR 116 (300)
T ss_pred HhCCeeEEeCCCCceECccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEcCccchhHHHHHHHHHHH
Confidence 457888888877765432 2344456666666555422222211111123444445666777788888876653
No 82
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=26.48 E-value=75 Score=30.41 Aligned_cols=34 Identities=3% Similarity=-0.101 Sum_probs=30.0
Q ss_pred CCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEcc
Q psy232 65 SYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQ 101 (299)
Q Consensus 65 ~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~ 101 (299)
..++||+ |..+..++.+...+|..+|+ +||.+..
T Consensus 12 L~GirVl-dls~~~aGP~a~~lLAdlGA--eVIKVE~ 45 (405)
T PRK03525 12 LAGLRVV-FSGIEIAGPFAGQMFAEWGA--EVIWIEN 45 (405)
T ss_pred CCCCEEE-EecchhHHHHHHHHHHHcCC--cEEEECC
Confidence 3567777 99999999999999999999 9999974
No 83
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=26.26 E-value=1.5e+02 Score=21.49 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=25.5
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEE
Q psy232 67 SQDIYFDGANGVGGVKIKELQKIIESKLKIEVY 99 (299)
Q Consensus 67 ~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~l 99 (299)
.-+|++=|..|..+..+...|+++|. ++..+
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~G~--~~~~l 91 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAERGY--DVDYL 91 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcCc--eeEEe
Confidence 45688889999999999999999999 74444
No 84
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=25.71 E-value=1.9e+02 Score=20.92 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.6
Q ss_pred ceEEEecCCCcceEEEE-------EEeCCHHHHHHHHHHHHHHHHhh
Q psy232 259 ARSFVRPSGTEDIVRIY-------VEAETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 259 gw~liRpSgTEp~iriy-------~Ea~~~~~~~~l~~~~~~~v~~~ 298 (299)
.++.+|.......+.|| .-|.+++.+++..+.+.+.|+++
T Consensus 39 pgl~~r~~~p~~t~~IF~sGki~itGaks~~~~~~a~~~i~~~L~~~ 85 (86)
T PF00352_consen 39 PGLIYRLRNPKATVLIFSSGKIVITGAKSEEEAKKAIEKILPILQKL 85 (86)
T ss_dssp SSEEEEETTTTEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEeecCCcEEEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 35666666555555554 35679999999999999999875
No 85
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=25.65 E-value=46 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.9
Q ss_pred EEEeCCCCCeeEEeeeCCCCCeeeechH
Q psy232 137 YLSVDGDADRIIYWYPNEDNTIHLLDGD 164 (299)
Q Consensus 137 Gia~DgDgDR~~~~~vd~~G~~~~l~gd 164 (299)
++.||+++|++.+ ...+|++.++.++
T Consensus 15 ~~~~~~~v~~V~~--p~~~G~~gILp~H 40 (89)
T PRK13442 15 RPVWSGEATMVVA--RTTEGDIGILPGH 40 (89)
T ss_pred ccEEeceeEEEEE--ECCcCCcEecCCC
Confidence 4678999999988 9999988777765
No 86
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=25.61 E-value=89 Score=25.37 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=19.6
Q ss_pred eEEEcCCCCC--cHHHHHHHHHHcCCCceEEEEc
Q psy232 69 DIYFDGANGV--GGVKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 69 kIvvD~~nG~--~~~~~~~ll~~lg~~~~v~~ln 100 (299)
||++-+-|+- -...+.+.|+..|. +|+-+-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~--eV~D~G 33 (142)
T PRK08621 2 AIIIGADKAGFELKEVVKDYLEDNKY--EVVDVT 33 (142)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCC--EEEECC
Confidence 5677666653 23346777888898 776553
No 87
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.28 E-value=1.4e+02 Score=21.84 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEc
Q psy232 66 YSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 66 ~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln 100 (299)
+.-+||+-|..|.-+..+...|+.+|.. ++..+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~-~v~~l~ 93 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFK-NVYQLK 93 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCc-ceeeec
Confidence 3457999999998888888899999983 355554
No 88
>PRK05783 hypothetical protein; Provisional
Probab=25.27 E-value=1.1e+02 Score=22.41 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=25.1
Q ss_pred EecCCCcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 263 VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 263 iRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
|.--.+--.+++++++.|++.|++.++++.+.+
T Consensus 35 V~~VRvGK~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 35 IIEVRAGKYLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred cceEEeeEEEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 444446678999999999998888887776543
No 89
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=25.02 E-value=64 Score=19.06 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.3
Q ss_pred EEEEeCCCCCeeEEeeeCCC
Q psy232 136 KYLSVDGDADRIIYWYPNED 155 (299)
Q Consensus 136 lGia~DgDgDR~~~~~vd~~ 155 (299)
-|+++|++++|+-. .|..
T Consensus 12 ~~la~d~~~~~lYw--~D~~ 29 (43)
T smart00135 12 NGLAVDWIEGRLYW--TDWG 29 (43)
T ss_pred CEEEEeecCCEEEE--EeCC
Confidence 57999999998865 7654
No 90
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=24.96 E-value=93 Score=26.11 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=53.8
Q ss_pred eEEEcCCCCCc--HHHHHHHHHHcCCCceEEEEccccCCCCCCCCCCCCCCCcccccCCccccccCCCcEEEEeCCCCCe
Q psy232 69 DIYFDGANGVG--GVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGDADR 146 (299)
Q Consensus 69 kIvvD~~nG~~--~~~~~~ll~~lg~~~~v~~ln~~~d~~~~~n~~~g~~~p~~~~~~~~~l~~~~~adlGia~DgDgDR 146 (299)
||++-+-|... ...+...|+..|. +|+-+-...++ . .+||.--.+..+.+ -++.+||
T Consensus 2 kI~IgsDhaG~~lK~~l~~~L~~~G~--eV~D~G~~~~e------~--~dYpd~a~~va~~V-----------~~g~~d~ 60 (171)
T PRK08622 2 KIAIGCDHIVTDEKMAVSDYLKSKGH--EVIDVGTYDFT------R--THYPIFGKKVGEAV-----------ASGEADL 60 (171)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCC--EEEEcCCCCCC------C--CChHHHHHHHHHHH-----------HcCCCcE
Confidence 57777766532 2346677888898 77665432211 1 13554222222222 2355666
Q ss_pred eEEeeeCCCCCeeeechHHHHHHHHHHHHHHHhhcCCCcccCCceEEeeeeChhHHHHHHHhCCCeEEEe
Q psy232 147 IIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFT 216 (299)
Q Consensus 147 ~~~~~vd~~G~~~~l~gd~~~~Lla~~ll~~~~~~~~~~~~~~~vv~t~~ss~~~~~~i~~~~g~~v~~t 216 (299)
-++ ++..| +..-++. . +- .+|.+..+++........+..+.+|..-
T Consensus 61 GIl--iCGTG---------iG~siaA----N-Kv--------~GIRAA~~~d~~sA~~aR~hNnaNVL~l 106 (171)
T PRK08622 61 GVC--ICGTG---------VGISNAV----N-KV--------PGIRSALVRDMTSALYAKEELNANVIGF 106 (171)
T ss_pred EEE--EcCCc---------HHHHHHH----h-cC--------CCeEEEEeCCHHHHHHHHHhcCCcEEEE
Confidence 666 67666 1222221 1 11 2466565666665666666667777754
No 91
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=24.90 E-value=87 Score=18.51 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=14.8
Q ss_pred CCCcEEEEeCCCCCeeEE
Q psy232 132 NLNNKYLSVDGDADRIIY 149 (299)
Q Consensus 132 ~~adlGia~DgDgDR~~~ 149 (299)
...+...++.+||.++++
T Consensus 8 ~~~~~~p~~SpDGk~i~f 25 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYF 25 (39)
T ss_dssp SSSEEEEEE-TTSSEEEE
T ss_pred CccccCEEEecCCCEEEE
Confidence 456789999999999987
No 92
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=24.72 E-value=1.5e+02 Score=21.04 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=26.4
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEc
Q psy232 67 SQDIYFDGANGVGGVKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 67 ~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln 100 (299)
.-+||+=|.+|..+..+...|+.+|. ++..++
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~--~v~~l~ 82 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGF--KVKNLD 82 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCC--CEEEec
Confidence 34688888899888888989999998 877775
No 93
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=24.50 E-value=1e+02 Score=20.04 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.6
Q ss_pred EEEEeCCHHHHHHHHHH
Q psy232 274 IYVEAETSEDVNALTEE 290 (299)
Q Consensus 274 iy~Ea~~~~~~~~l~~~ 290 (299)
|++||.|.+.|.+..+.
T Consensus 14 V~VeA~s~eeA~~~v~~ 30 (48)
T PF14207_consen 14 VTVEAESEEEAIEKVRD 30 (48)
T ss_pred EEEEeCCHHHHHHHHHH
Confidence 78999999988777643
No 94
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=24.46 E-value=1.4e+02 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred CcceEEEEEEeCCHHHHHHHHHHHHHHH
Q psy232 268 TEDIVRIYVEAETSEDVNALTEEIQQVV 295 (299)
Q Consensus 268 TEp~iriy~Ea~~~~~~~~l~~~~~~~v 295 (299)
+--.+++.+|+.|.+.|++.++.+.+.+
T Consensus 38 ~GK~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 38 VGKYIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 3457889999999999988888877653
No 95
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=24.36 E-value=1.9e+02 Score=21.04 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQ 293 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~ 293 (299)
.||+-=.++| -+.+.+|+ +++.++++++.+.+
T Consensus 33 ~G~V~N~~dg---~V~i~~~G-~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 33 TGWVRNLPDG---SVEIEAEG-EEEQLEEFIKWLKK 64 (91)
T ss_dssp EEEEEE-TTS---EEEEEEEE-EHHHHHHHHHHHHH
T ss_pred ceEEEECCCC---EEEEEEEe-CHHHHHHHHHHHHh
Confidence 5898888888 68888888 55668887776653
No 96
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=24.10 E-value=1e+02 Score=25.83 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=19.5
Q ss_pred eEEEcCCCCCcH--HHHHHHHHHcCCCceEEEEc
Q psy232 69 DIYFDGANGVGG--VKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 69 kIvvD~~nG~~~--~~~~~ll~~lg~~~~v~~ln 100 (299)
||++-+-|+.-. ..+...|+..|. +|+-+-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~--eV~D~G 33 (171)
T PRK12615 2 KIAIGCDHIVTNEKMAVSDFLKSKGY--DVIDCG 33 (171)
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCC--EEEEcC
Confidence 577777665332 246677888898 776554
No 97
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=12 Score=36.18 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred CceEEEecCCCcceEEEEEEeC
Q psy232 258 NARSFVRPSGTEDIVRIYVEAE 279 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~ 279 (299)
+.|+-+||.+|-|++|-|+|-.
T Consensus 74 gr~laLRpe~Tapv~R~~~en~ 95 (429)
T COG0124 74 GRSLALRPELTAPVARAVAENK 95 (429)
T ss_pred CCEEEecccCcHHHHHHHHhcc
Confidence 4599999999999999999864
No 98
>PRK14426 acylphosphatase; Provisional
Probab=23.70 E-value=1.8e+02 Score=21.41 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=23.7
Q ss_pred CceEEEecCCCcceEEEEEEeCCHHHHHHHHHHHH
Q psy232 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQ 292 (299)
Q Consensus 258 ~gw~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~ 292 (299)
.||+-=.++|+ |.|++|++. +.++++++.+.
T Consensus 33 ~G~V~N~~dG~---Vei~~~G~~-~~i~~f~~~l~ 63 (92)
T PRK14426 33 TGYAKNLDDGS---VEVVACGEE-EQVEKLMEWLK 63 (92)
T ss_pred EEEEEECCCCc---EEEEEEeCH-HHHHHHHHHHh
Confidence 59998888886 889999965 44777776654
No 99
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.41 E-value=1.4e+02 Score=26.63 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=27.4
Q ss_pred CCCeEEEcCCCCCcH----HHHHHHHHHcCCCce--EEEEccccCC
Q psy232 66 YSQDIYFDGANGVGG----VKIKELQKIIESKLK--IEVYNQDVTT 105 (299)
Q Consensus 66 ~~~kIvvD~~nG~~~----~~~~~ll~~lg~~~~--v~~ln~~~d~ 105 (299)
.++.|++|+.|..|. ..+....-.+|+ + ++..+.+||.
T Consensus 183 ~~lPVivd~SHs~G~r~~v~~~a~AAvA~GA--dGl~IE~H~~P~~ 226 (250)
T PRK13397 183 TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGA--NGIMMEVHPDPDH 226 (250)
T ss_pred hCCCeEECCCCCCcccchHHHHHHHHHHhCC--CEEEEEecCCccc
Confidence 468999999998774 234444458899 8 7777776664
No 100
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.12 E-value=2.1e+02 Score=25.35 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEccc
Q psy232 66 YSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQD 102 (299)
Q Consensus 66 ~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~~ 102 (299)
....|+||++=|+.+.....+ +||| +.+.+|.-
T Consensus 181 a~VPviVDAGiG~pSdAa~aM--ElG~--DaVL~NTA 213 (262)
T COG2022 181 ADVPVIVDAGIGTPSDAAQAM--ELGA--DAVLLNTA 213 (262)
T ss_pred CCCCEEEeCCCCChhHHHHHH--hccc--ceeehhhH
Confidence 357899999999998776533 8999 99999943
No 101
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.11 E-value=1e+02 Score=25.03 Aligned_cols=28 Identities=4% Similarity=0.010 Sum_probs=16.6
Q ss_pred ceEEeeeeChhHHHHHHHhCCCeEEEec
Q psy232 190 KVIQTAYTNGNCTNYIKNTLNIDVIFTS 217 (299)
Q Consensus 190 ~vv~t~~ss~~~~~~i~~~~g~~v~~t~ 217 (299)
+|.....++........+..+.+|..-.
T Consensus 79 GIraa~~~d~~~A~~ar~hNnaNvl~lG 106 (143)
T TIGR01120 79 GIRAALCSEPYMAQMSRLHNDANVLCLG 106 (143)
T ss_pred CeEEEEECCHHHHHHHHHhcCCcEEEEC
Confidence 4555555555555666665677776544
No 102
>PHA02892 hypothetical protein; Provisional
Probab=22.44 E-value=42 Score=23.61 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=36.5
Q ss_pred cHHHHHHHHH-HHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcCCCceEEEEcc
Q psy232 40 EESEYFTHFG-NAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQ 101 (299)
Q Consensus 40 ~~~~Y~~~l~-~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~~~v~~ln~ 101 (299)
.+..|++.+- +.|..++..+ ++-+ |.-.+++-..+.+++..+.. ++..+|-
T Consensus 3 ~~~~~~EDInEsNf~HLL~~L------sn~~---D~efsATls~vkElIs~IN~--Kvl~INK 54 (75)
T PHA02892 3 DINDYIDDINEDSINHMLSTL------ANVK---DPEFSASISLMQEIIKIINS--KIIEIDK 54 (75)
T ss_pred cHHHHHHhhhHHHHHHHHHHH------ccCC---CchHHHHHHHHHHHHHHHHH--HHHhhhh
Confidence 4567888874 4566544443 2223 78888888889999999998 8888883
No 103
>COG5503 Uncharacterized conserved small protein [Function unknown]
Probab=22.38 E-value=79 Score=22.02 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.3
Q ss_pred EEEEeCCHHHHHHHHHH
Q psy232 274 IYVEAETSEDVNALTEE 290 (299)
Q Consensus 274 iy~Ea~~~~~~~~l~~~ 290 (299)
+|+|++++.+++++++.
T Consensus 23 LYle~~se~~vR~ll~e 39 (69)
T COG5503 23 LYLEADSETKVRQLLKE 39 (69)
T ss_pred EEEechhHHHHHHHHhc
Confidence 79999999998887753
No 104
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=22.23 E-value=1.1e+02 Score=24.93 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=19.3
Q ss_pred eEEEcCCCCCcH--HHHHHHHHHcCCCceEEEEc
Q psy232 69 DIYFDGANGVGG--VKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 69 kIvvD~~nG~~~--~~~~~ll~~lg~~~~v~~ln 100 (299)
||++-+-|+--. ..+...|+..|. +|+-+-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~--eV~D~G 33 (148)
T PRK05571 2 KIAIGSDHAGFELKEEIIEHLEELGH--EVIDLG 33 (148)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHCCC--EEEEcC
Confidence 566766665322 246777888898 776654
No 105
>PRK01215 competence damage-inducible protein A; Provisional
Probab=22.21 E-value=3.1e+02 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=27.9
Q ss_pred EecCCCcceEEEEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 263 VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 263 iRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
.+++.-+-.||+.+.+.+.+.++.+++.+.+.|++
T Consensus 217 ~~~~~~~v~vrl~~~~~~~~~~~~~~~~~~~~i~~ 251 (264)
T PRK01215 217 YEVSKPILEIQIAGSGEREEEAKVKVEKVLEELKE 251 (264)
T ss_pred eecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 55677788999999999999999877766666543
No 106
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=21.98 E-value=1.6e+02 Score=20.56 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=24.6
Q ss_pred ceEEEecCCC-cceEEEEEEeC---CHHHHHHHHHHHHHH
Q psy232 259 ARSFVRPSGT-EDIVRIYVEAE---TSEDVNALTEEIQQV 294 (299)
Q Consensus 259 gw~liRpSgT-Ep~iriy~Ea~---~~~~~~~l~~~~~~~ 294 (299)
.++..||+.. ...+.+|+|.+ +.+..+++++.+++.
T Consensus 30 ~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~ 69 (80)
T cd04905 30 TKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred EEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 5888999965 45567676654 456777777776664
No 107
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=21.93 E-value=2.1e+02 Score=26.99 Aligned_cols=47 Identities=11% Similarity=-0.005 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCeEEEcCCCCCcHHHHHHHHHHcC
Q psy232 42 SEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIE 91 (299)
Q Consensus 42 ~~Y~~~l~~~~~~~~~~i~~~~~~~~~kIvvD~~nG~~~~~~~~ll~~lg 91 (299)
..+.+.+.+.+...++. ......+-|+.+.+.|+|+.+.+.+++.+.
T Consensus 69 ~~~~e~~~d~ir~~~E~---cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~ 115 (382)
T cd06059 69 PELIDEILDRIRKQVEK---CDSLQGFQITHSLGGGTGSGLGSLLLELLS 115 (382)
T ss_pred HHHHHHHHHHHHHHHHh---CCCcCceEEEEecCCCcchhHHHHHHHHHH
Confidence 46666666666543222 122356789999999999999888887775
No 108
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=21.80 E-value=1.2e+02 Score=24.78 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=21.3
Q ss_pred CeEEEcCCCCCcHH--HHHHHHHH--cCCCceEEEEc
Q psy232 68 QDIYFDGANGVGGV--KIKELQKI--IESKLKIEVYN 100 (299)
Q Consensus 68 ~kIvvD~~nG~~~~--~~~~ll~~--lg~~~~v~~ln 100 (299)
.||++-+-|+--.. .+...|++ .|. +|+-+-
T Consensus 3 mkI~igsDhaG~~lK~~l~~~L~~~~~g~--eV~D~G 37 (151)
T PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYIKNKGKEY--KIEDMG 37 (151)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHhccCCC--EEEEcC
Confidence 57888887764333 46777888 888 776653
No 109
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=21.49 E-value=1.8e+02 Score=22.52 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=25.5
Q ss_pred CCCeEEEcCC-CCCcHHHHHHHHHHcCCCceEEEEc
Q psy232 66 YSQDIYFDGA-NGVGGVKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 66 ~~~kIvvD~~-nG~~~~~~~~ll~~lg~~~~v~~ln 100 (299)
+.-+|++-|. .|..+..+-.+|+.+|. ++..++
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~--~v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGI--DVPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCC--ceeEeC
Confidence 3456888885 68888888899999999 766665
No 110
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=21.13 E-value=1.9e+02 Score=18.92 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=20.9
Q ss_pred ceEEEEEE-eCCHHHHHHHHHHHHHHHHhh
Q psy232 270 DIVRIYVE-AETSEDVNALTEEIQQVVKTY 298 (299)
Q Consensus 270 p~iriy~E-a~~~~~~~~l~~~~~~~v~~~ 298 (299)
|+++|.+= +.|.++.++|++.+.+.+.+.
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~ 30 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEV 30 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 67777654 568999999999998887653
No 111
>KOG0119|consensus
Probab=20.93 E-value=1.3e+02 Score=29.61 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=26.0
Q ss_pred CCCcceEEEEEEeCCHHHHHHHHHHHHHHHHh
Q psy232 266 SGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297 (299)
Q Consensus 266 SgTEp~iriy~Ea~~~~~~~~l~~~~~~~v~~ 297 (299)
.-.|| ++.|++|+|+|.+++-++.++++|++
T Consensus 200 ~~~ep-LH~~Isadt~eki~~Ai~vienli~~ 230 (554)
T KOG0119|consen 200 KENEP-LHCLISADTQEKIKKAIAVIENLIQS 230 (554)
T ss_pred ccccc-eeEEEecchHHHHHHHHHHHHHHHHh
Confidence 33444 69999999999999999999998875
No 112
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=20.78 E-value=1e+02 Score=25.68 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=20.3
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCC
Q psy232 67 SQDIYFDGANGVGGVKIKELQKIIES 92 (299)
Q Consensus 67 ~~kIvvD~~nG~~~~~~~~ll~~lg~ 92 (299)
+-.+++|++.|+|+..+...+....+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~ 53 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANI 53 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCc
Confidence 44699999999999999988877776
No 113
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=20.64 E-value=1.4e+02 Score=21.18 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.5
Q ss_pred CcceEEEEEEeCC
Q psy232 268 TEDIVRIYVEAET 280 (299)
Q Consensus 268 TEp~iriy~Ea~~ 280 (299)
-||+++||++.+.
T Consensus 47 Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 47 GDPLATIYANDEA 59 (75)
T ss_dssp TSEEEEEEESSSS
T ss_pred CCeEEEEEcCChH
Confidence 3899999999887
No 114
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=20.06 E-value=1.5e+02 Score=24.95 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=19.4
Q ss_pred eEEEcCCCCCcH--HHHHHHHHHcCCCceEEEEc
Q psy232 69 DIYFDGANGVGG--VKIKELQKIIESKLKIEVYN 100 (299)
Q Consensus 69 kIvvD~~nG~~~--~~~~~ll~~lg~~~~v~~ln 100 (299)
||++-+-|+.-. ..+...|++.|. +|+-+-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~--eV~D~G 33 (171)
T TIGR01119 2 KIAIGCDHIVTDVKMEVSEFLKSKGY--EVLDVG 33 (171)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHCCC--EEEEeC
Confidence 567766665322 246677888898 776654
Done!