RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy232
(299 letters)
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model.
Length = 513
Score = 244 bits (625), Expect = 1e-77
Identities = 80/201 (39%), Positives = 113/201 (56%), Gaps = 1/201 (0%)
Query: 31 NHNVNSRVFEESEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKII 90
N E Y+ A+ L D + + D ANGVG +K+KEL K +
Sbjct: 152 NTEGAYGEPTEEGYYEKLSKAFNELYNLL-QDGGDEPEKLVVDCANGVGALKLKELLKRL 210
Query: 91 ESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGDADRIIYW 150
+ L +++ N LN CGAD+ KTK+ P G +K + S DGDADR++Y+
Sbjct: 211 KKGLSVKIINDGEEGPELLNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYF 270
Query: 151 YPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLN 210
YP+ N HLLDGD+IA LFA +I EL+ + + K+ I V+QTAY NG T Y+++ L
Sbjct: 271 YPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAYANGASTKYLEDVLK 330
Query: 211 IDVIFTSTGVKHLHHEALKYD 231
+ V+ T TGVKHLHH A ++D
Sbjct: 331 VPVVCTPTGVKHLHHAAEEFD 351
Score = 102 bits (256), Expect = 2e-24
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 229 KYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALT 288
T +A+ +VEP G+QD I+ VAK+NN R+FVRPSGTED+VR+Y EA T E+ + L
Sbjct: 447 VIKTTDAERRLVEPKGLQDKIDAIVAKYNNGRAFVRPSGTEDVVRVYAEAATQEEADELA 506
Query: 289 EEIQQVV 295
E+ ++V
Sbjct: 507 NEVAELV 513
>gnl|CDD|215485 PLN02895, PLN02895, phosphoacetylglucosamine mutase.
Length = 562
Score = 183 bits (466), Expect = 1e-53
Identities = 78/204 (38%), Positives = 113/204 (55%), Gaps = 17/204 (8%)
Query: 41 ESEYFTHFGNAYLSYQKFLLTDNKSYSQD-----IYFDGANGVGGVKIKELQKIIESKLK 95
ES+YF S++ L D + DGANGVG K++ L+K + L
Sbjct: 184 ESDYFE---QLSSSFRALLDLIPNGSGDDRADDKLVVDGANGVGAEKLETLKKALGG-LD 239
Query: 96 IEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNED 155
+EV N +G LN GADF + +K+ PTG K++ + S+DGDADR++Y+Y +
Sbjct: 240 LEVRNSGKEGEGVLNEGVGADFVQKEKVPPTGFASKDVGLRCASLDGDADRLVYFYVSSA 299
Query: 156 NT-IHLLDGDRIAVLFAMYINELIARCNLKDK-------VNIKVIQTAYTNGNCTNYIKN 207
+ I LLDGD+IA LFA++I E + N V + V+QTAY NG T Y+K
Sbjct: 300 GSKIDLLDGDKIASLFALFIKEQLRILNGNGNEKPEELLVRLGVVQTAYANGASTAYLKQ 359
Query: 208 TLNIDVIFTSTGVKHLHHEALKYD 231
L ++V+ T TGVK+LH A ++D
Sbjct: 360 VLGLEVVCTPTGVKYLHEAAAEFD 383
Score = 93.6 bits (233), Expect = 3e-21
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 232 TINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEI 291
T +A+T +V P G+QD+I+ VAK+ R+FVRPSGTED+VR+Y EA T E ++L E+
Sbjct: 488 TTDAETVVVRPAGLQDAIDAEVAKYPRGRAFVRPSGTEDVVRVYAEASTQEAADSLAREV 547
Query: 292 QQVVK 296
++V
Sbjct: 548 ARLVY 552
>gnl|CDD|240352 PTZ00302, PTZ00302, N-acetylglucosamine-phosphate mutase;
Provisional.
Length = 585
Score = 181 bits (460), Expect = 1e-52
Identities = 79/215 (36%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 28 ANGNHNVNSRVFEES--EYFTH-FGNAYLSYQK-FLLTDNKSYSQDIYFDGANGVGGVKI 83
ANG +E Y F Y + Q+ + ++ S+ + D ANGVGG KI
Sbjct: 202 ANGLGVDVVESSDELYYAYLLAAFKELYRTLQEGGPVDLTQNNSKILVVDCANGVGGYKI 261
Query: 84 KELQKIIESKLKIEVY--NQDVTTQGKLNFQCGADFAKTKKIVPTGV--NIKNLNNKYLS 139
K + + +L IE+ N + + LN +CGAD+ + + P + + + S
Sbjct: 262 KRFFEAL-KQLGIEIIPININCDEEELLNDKCGADYVQKTRKPPRAMKEWPGDEETRVAS 320
Query: 140 VDGDADRIIYWYPNE--DNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYT 197
DGDADR++Y++P++ D+ LLDGDRIA+L+AM I +L+ + LK K++I V+QTAY
Sbjct: 321 FDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQLKKKLDIGVVQTAYA 380
Query: 198 NGNCTNYIKNTLN-IDVIFTSTGVKHLHHEALKYD 231
NG TNY+ L + V TGVK+LH +A KYD
Sbjct: 381 NGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYD 415
Score = 87.0 bits (216), Expect = 4e-19
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 235 ADTEIVEPLGMQDSINKSVAKFNN-ARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQ 293
+T ++EP G+QD I+ V+K++N AR+F+RPSGTE +VR+Y EA T E + L E++
Sbjct: 517 DETRLLEPKGLQDKIDAIVSKYDNAARAFIRPSGTEPVVRVYAEAPTLEQADELANEVKG 576
Query: 294 VVKTYL 299
+V Y
Sbjct: 577 LVLRYC 582
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 355
Score = 88.6 bits (220), Expect = 5e-20
Identities = 66/262 (25%), Positives = 101/262 (38%), Gaps = 55/262 (20%)
Query: 69 DIYFDGANGVGGVKIKELQKIIESKLKIEV--YNQDVT-TQGKLNFQCGADFAKTKKIVP 125
+ D NGVGG +L + KL EV N + G +N G++ +
Sbjct: 114 KVVVDSVNGVGGPIAPQLLE----KLGAEVIPLNCEPDGNFGNINPDPGSE----TNLKQ 165
Query: 126 TGVNIKNLNNK-YLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLK 184
+K ++ DGDADR+I N LDGD + L A+ + L
Sbjct: 166 LLAVVKAEKADFGVAFDGDADRLIVVDENGG----FLDGDELLALLAVEL-------FLT 214
Query: 185 DKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDTI-----NADTEI 239
V++T ++G K L I VI T TG K + + D + +
Sbjct: 215 FNPRGGVVKTVVSSGALDKVAKK-LGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIF 273
Query: 240 VEPLGMQDSI-------------NKSVAKFNNA-------------RSFVRPSGTEDIVR 273
E +D I KS+++ + VR SGTE +R
Sbjct: 274 PEFHPGRDGISAALLLLEILANLGKSLSELFSELPRYYYIRLKVRGWVLVRASGTEPAIR 333
Query: 274 IYVEAETSEDVNALTEEIQQVV 295
IY EA+T EDV + +E +++V
Sbjct: 334 IYAEADTQEDVEQIKKEARELV 355
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 68.9 bits (169), Expect = 4e-13
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 18/162 (11%)
Query: 72 FDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIK 131
D ANG G+ L K +L EV + + G L + +T+ + +
Sbjct: 183 VDCANGAAGLVAPRLLK----ELGAEVVSINCDPDG-LFPNINPNPGETELLDLAKAVKE 237
Query: 132 NLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKV 191
+ + ++ DGDADR+I D + +DGD+I L A Y+ L+ V
Sbjct: 238 HGADLGIAFDGDADRLIV----VDERGNFVDGDQILALLAKYL--------LEKGKLPTV 285
Query: 192 IQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDTI 233
+ T ++ I L V+ T G K++ + + +
Sbjct: 286 VTTVMSSLA-LEKIAKKLGGKVVRTKVGDKYIAEKMRENGAV 326
Score = 53.5 bits (129), Expect = 4e-08
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 246 QDSINKSVAKFNNA-RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
D+I+ + + R VRPSGTE ++R+YVEA+ E L EEI ++V+
Sbjct: 407 VDTIDGVKVELEDGGRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAELVR 458
>gnl|CDD|237671 PRK14317, glmM, phosphoglucosamine mutase; Provisional.
Length = 465
Score = 53.1 bits (128), Expect = 7e-08
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 241 EPLGMQDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
EPL Q +I ++ A + R VR SGTE ++R+ VEAE +E VN T + VV+ +L
Sbjct: 407 EPL--QQAIAQAEAAMGDTGRVLVRASGTEPLIRVMVEAEDAELVNHWTNHLVAVVQQHL 464
>gnl|CDD|237670 PRK14316, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 52.5 bits (127), Expect = 9e-08
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 246 QDSINKSVAKFN-NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297
++ I K + N R VRPSGTE +VR+ EA T E+V+ + I VV+
Sbjct: 391 KEIIEKVEEEMAGNGRVLVRPSGTEPLVRVMAEAPTQEEVDKYVDRIADVVEA 443
Score = 32.1 bits (74), Expect = 0.35
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
L+ DGDADR+I D +++DGD+I + Y+ E
Sbjct: 237 LAFDGDADRLIA----VDENGNIVDGDKIMFICGKYLKE 271
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase. The MMP1680
protein from Methanococcus maripaludis has been
characterized as the archaeal protein responsible for
the second step of UDP-GlcNAc biosynthesis. This GlmM
protein catalyzes the conversion of
glucosamine-6-phosphate to glucosamine-1-phosphate. The
first-characterized bacterial GlmM protein is modeled by
TIGR01455. These two families are members of the larger
phosphoglucomutase/phosphomannomutase family
(characterized by three domains: pfam02878, pfam02879
and pfam02880), but are not nearest neighbors to each
other. This model also includes a number of sequences
from non-archaea in the Bacteroides, Chlorobi,
Chloroflexi, Planctomycetes and Spirochaetes lineages.
Evidence supporting their inclusion in this equivalog as
having the same activity comes from genomic context and
phylogenetic profiling. A large number of these
organisms are known to produce exo-polysaccharide and
yet only appeared to contain the GlmS enzyme of the
GlmSMU pathway for UDP-GlcNAc biosynthesis
(GenProp0750). In some organisms including Leptospira,
this archaeal GlmM is found adjacent to the GlmS as well
as a putative GlmU non-orthologous homolog. Phylogenetic
profiling of the GlmS-only pattern using PPP identifies
members of this archaeal GlmM family as the
highest-scoring result [Central intermediary metabolism,
Amino sugars].
Length = 443
Score = 51.4 bits (124), Expect = 2e-07
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 263 VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295
VRPSGTE IVRIY EA+T E L EE + +V
Sbjct: 411 VRPSGTEPIVRIYAEAKTEERAEELLEEGRSLV 443
Score = 31.3 bits (72), Expect = 0.58
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 140 VDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKV 187
DGDADR+++ D + GD LFA Y+ E + KV
Sbjct: 237 HDGDADRLVFI----DEKGRFIGGDYTLALFAKYLLE-----HGGGKV 275
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model.
Length = 461
Score = 51.0 bits (123), Expect = 3e-07
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 263 VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295
+RPSGTE ++RIY EA + E V AL + +++
Sbjct: 429 IRPSGTEPLLRIYAEAPSPEKVEALLDAGKKLA 461
>gnl|CDD|215905 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase,
C-terminal domain.
Length = 71
Score = 46.5 bits (111), Expect = 4e-07
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 256 FNNARSF-VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
F + R VRPSGTE ++R+YVEA+ ++ + E+ + +K
Sbjct: 30 FEDGRRVTVRPSGTEPVLRVYVEADDEAELEEIAAEVAEALK 71
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 439
Score = 49.9 bits (120), Expect = 8e-07
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 263 VRPSGTEDIVRIYVEAETSEDVNALTEEI 291
+RPSGTE +RI EA+T E L EE
Sbjct: 407 IRPSGTEPKIRITAEAKTEERAKELLEEG 435
Score = 32.9 bits (76), Expect = 0.17
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKV 187
DGDADR ++ D +DGD++ L A Y+ E KV
Sbjct: 233 DGDADRAVFV----DEKGRFIDGDKLLALLAKYLLE-----EGGGKV 270
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase. This model describes
GlmM, phosphoglucosamine mutase, also designated in MrsA
and YhbF E. coli, UreC in Helicobacter pylori, and
femR315 or FemD in Staphlococcus aureus. It converts
glucosamine-6-phosphate to glucosamine-1-phosphate as
part of the pathway toward UDP-N-acetylglucosamine for
peptidoglycan and lipopolysaccharides [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Central intermediary metabolism, Amino
sugars].
Length = 443
Score = 46.6 bits (111), Expect = 7e-06
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 258 NARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297
R +RPSGTE ++R+ VEA E V L + + VV
Sbjct: 404 TGRILLRPSGTEPLIRVMVEAADEELVQQLADTLADVVSA 443
Score = 40.8 bits (96), Expect = 5e-04
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 109 LNFQCGADFAKT--KKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRI 166
+N CG+ K + G ++ ++ DGDADR++ D ++DGD+I
Sbjct: 211 INDGCGSTHLDALQKAVREHGADLG------IAFDGDADRVLA----VDANGRIVDGDQI 260
Query: 167 AVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHE 226
+ A + E L V+ T +N + L + +I T+ G +++ E
Sbjct: 261 LYIIARALKE---SGELAGN---TVVATVMSNLGLERAL-EKLGLTLIRTAVGDRYVLEE 313
Query: 227 ALKYD 231
+
Sbjct: 314 MRESG 318
>gnl|CDD|184619 PRK14322, glmM, phosphoglucosamine mutase; Provisional.
Length = 429
Score = 46.5 bits (110), Expect = 9e-06
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 76/283 (26%)
Query: 70 IYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKL-NFQCGADFAKTKKIVPTGV 128
+ D ANG KE+ + + +K +EV+N + G L N CGA +
Sbjct: 168 VSLDLANGATTTTAKEVFEFLGAK--VEVFND--SQDGLLINQGCGATHPRF-----LAE 218
Query: 129 NIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVN 188
+KN + + DGD DR+I D ++++GDRI + A+ + E R N +
Sbjct: 219 EMKNGKVGF-TFDGDGDRVI----AVDEERNVVNGDRIIGILAVGLKEE-GRLN-----S 267
Query: 189 IKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALK------------------- 229
V+ T TNG +++K I ++ T G K++ + L+
Sbjct: 268 DTVVGTVMTNGGLEDFLKER-GIKLLRTKVGDKYVLEKMLESGANLGGERSGHIIILDRS 326
Query: 230 --------------------------------YDTINADTEIVEPLGMQDSINKSVAKFN 257
Y I + E + +++ + + + +
Sbjct: 327 TTGDGLITALELMRVLKRSGRNLSDFAKEIPDYPQITKNVRRTERMSLENENLRKIVEES 386
Query: 258 NARSF---VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKT 297
+R + +RPSGTE +VRI VE + E++ + EEI +V+++
Sbjct: 387 TSRGYRVVIRPSGTEPVVRITVEGKDREEIEKIVEEISRVLES 429
>gnl|CDD|237672 PRK14318, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 45.7 bits (109), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
R +RPSGTE +VR+ VEA E + + VV L
Sbjct: 408 RVLLRPSGTEPLVRVMVEAADEETARRVAGRLADVVAEAL 447
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in
the biosynthetic pathway of UDP-N-acetylglucosamine, an
essential precursor to components of the cell envelope.
In order to be active, GlmM must be phosphorylated,
which can occur via autophosphorylation or by the
Ser/Thr kinase StkP. GlmM functions in a classical
ping-pong bi-bi mechanism with
glucosamine-1,6-diphosphate as an intermediate. Other
members of the alpha-D-phosphohexomutase superfamily
include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 434
Score = 45.6 bits (109), Expect = 2e-05
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 246 QDSINKSVAKF-NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEI 291
Q +I ++ + R VRPSGTE ++R+ VE E E V L EE+
Sbjct: 387 QAAIAEAEKELGGEGRVLVRPSGTEPLIRVMVEGEDEELVEKLAEEL 433
Score = 32.8 bits (76), Expect = 0.19
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 36/128 (28%)
Query: 125 PTGVNIKNLN---------------NKY---LSVDGDADRIIYWYPNEDNTIHLLDGDRI 166
P G+NI N+N N ++ DGDADR+I D +++DGD+I
Sbjct: 203 PDGLNI-NVNCGSTHPESLQKAVLENGADLGIAFDGDADRVIA----VDEKGNIVDGDQI 257
Query: 167 AVLFAMYINELIARCNLKDKVNIK---VIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHL 223
+ I AR +LK++ +K V+ T +N +K L I ++ T G +++
Sbjct: 258 -----LAI---CAR-DLKERGRLKGNTVVGTVMSNLGLEKALKE-LGIKLVRTKVGDRYV 307
Query: 224 HHEALKYD 231
E LK+
Sbjct: 308 LEEMLKHG 315
>gnl|CDD|184614 PRK14314, glmM, phosphoglucosamine mutase; Provisional.
Length = 450
Score = 43.8 bits (104), Expect = 6e-05
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
R +R SGTE++ R+ VE E V++L +EI VV+ L
Sbjct: 410 RVLLRYSGTENLCRVMVEGEDKHQVDSLAKEIADVVEKEL 449
Score = 42.6 bits (101), Expect = 2e-04
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 109 LNFQCGADFAKT--KKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRI 166
+N CG+ + K ++ G ++ +++DGDADR+I D H++DGD+I
Sbjct: 216 INAGCGSLHPEVIAKAVIEHGADLG------IALDGDADRLIV----VDEKGHIVDGDQI 265
Query: 167 AVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHE 226
+ A +L R L ++ T +N +K L V+ T G +++ E
Sbjct: 266 MAICA---TDLKKRGALPKN---TLVATVMSNMGLEVAMKE-LGGQVLRTPVGDRYVVEE 318
Query: 227 ALKYDTI 233
+
Sbjct: 319 MRRGGAN 325
>gnl|CDD|236787 PRK10887, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 43.2 bits (103), Expect = 9e-05
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 257 NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
R +R SGTE ++R+ VE E V AL E I VK
Sbjct: 401 GRGRVLLRKSGTEPLIRVMVEGEDEAQVTALAERIADAVK 440
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
is located C-terminal to a mannose-1-phosphate
guanyltransferase domain in a protein of unknown
function that is found in both prokaryotes and
eukaryotes. This domain belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 445
Score = 43.5 bits (103), Expect = 9e-05
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 255 KFNNARSFV--RPSGTEDIVRIYVEAETSEDVNALTE 289
+ ++ S+V RPS TE IVRI EA T ++ AL +
Sbjct: 406 RLDSEDSWVHVRPSNTEPIVRIIAEAPTQDEAEALAD 442
>gnl|CDD|217264 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain II.
Length = 103
Score = 38.8 bits (91), Expect = 4e-04
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 28/112 (25%)
Query: 51 AYLSY--QKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGK 108
AY+ F L K + +D +GVGG + E + +L EV +
Sbjct: 2 AYIDRLASAFDLEALKKRGLKVVYDPLHGVGGEILPE----LLKRLGAEVV--------E 49
Query: 109 LNFQCGADFAKTKKIVPTGVNIKNL--------NNKY---LSVDGDADRIIY 149
LN + DF P + L ++ DGDADR+
Sbjct: 50 LNCEPDGDF---PTKAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGV 98
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 40.9 bits (97), Expect = 5e-04
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEA-ETSEDVNALTEEIQQVV 295
N RPSGTE +IY E+ E E ++ + +E Q++V
Sbjct: 497 TENGWFAARPSGTETTYKIYAESFEGDEHLHQIQKEAQEIV 537
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.
Length = 445
Score = 40.0 bits (94), Expect = 0.001
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
FN +R S TE ++R+ VEA T E+V+AL +E+ +++
Sbjct: 408 FN-----LRASNTEPLLRLNVEARTEEEVDALVDEVLAIIR 443
>gnl|CDD|172797 PRK14321, glmM, phosphoglucosamine mutase; Provisional.
Length = 449
Score = 38.7 bits (90), Expect = 0.003
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 264 RPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
RPSGTE I+RI +EA T E L E+ +++VK
Sbjct: 411 RPSGTEPIMRITLEAHTEEKAEELMEKAEKLVK 443
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 235 ADTEIVEPL-GMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTE-EIQ 292
T + P G +I N RPSGTE +IY E+ ++ + E
Sbjct: 454 PITAYLTPAPGNGAAIGGLKVTTENGWFAARPSGTEATYKIYAESFEGDEHLKQIQKEAA 513
Query: 293 QVV 295
++V
Sbjct: 514 EIV 516
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 487
Score = 37.5 bits (88), Expect = 0.007
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 257 NNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
+ +R VRPSGTE ++ Y+E + + +++ + K
Sbjct: 448 DGSRVTVRPSGTEPKIKFYIEVVGKKTLEEAEKKLDALKK 487
Score = 32.9 bits (76), Expect = 0.18
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYT 197
L+ D DADR+ ++D LL G+ I L A Y+ E K N +++T +
Sbjct: 257 LATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPK-NPVIVKTIVS 315
Query: 198 NGNCTNYIK---NTLNIDVIFTSTGVKHLHHEALKYDT 232
+ ++ + V T TG K + ++ + ++
Sbjct: 316 ----SELLRKIAKKYGVKVEETLTGFKWIGNKIEELES 349
>gnl|CDD|184620 PRK14323, glmM, phosphoglucosamine mutase; Provisional.
Length = 440
Score = 36.3 bits (84), Expect = 0.018
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
R +RPSGTE +VR+ VE ++ + E+ VV+
Sbjct: 400 RVNLRPSGTEPLVRVMVEGPDEAEIEEVARELAGVVE 436
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 36.1 bits (84), Expect = 0.022
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 264 RPSGTEDIVRIYVEAETSED-VNALTEEIQQVV 295
RPSGTED+ +IY E+ SE+ + + +E Q++V
Sbjct: 490 RPSGTEDVYKIYAESFLSEEHLKKIQKEAQEIV 522
>gnl|CDD|237669 PRK14315, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 34.9 bits (81), Expect = 0.046
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 241 EPL---GMQDSINKSVAKFNNA-RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
+PL ++ +I + A+ N + R +RPSGTE ++R+ E + V + +EI V
Sbjct: 385 KPLEDASVKSAIADAEARLNGSGRLLIRPSGTEPLIRVMAEGDDRALVEEVVDEIVDAVS 444
Score = 34.5 bits (80), Expect = 0.063
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 110 NFQCG--ADFAKTKKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIA 167
N +CG A KK+ +I +++DGDADR+I D H++DGD++
Sbjct: 216 NEECGSTHPEALAKKVREVRADIG------IALDGDADRVII----VDEKGHVVDGDQLM 265
Query: 168 VLFA 171
L A
Sbjct: 266 ALIA 269
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model.
Length = 443
Score = 34.4 bits (80), Expect = 0.061
Identities = 38/188 (20%), Positives = 58/188 (30%), Gaps = 58/188 (30%)
Query: 6 LSYEEILNLYNKSYSQDIYFDGANGNHNVNSRVFEESEYFTHFGNAYLSYQKFLLTDNKS 65
LS E+I L ++ D G+ + + Y LL+D K
Sbjct: 114 LSGEDIQALRERAEKGDFAAATGRGSVEKVD-ILPD-------------YIDRLLSDIKL 159
Query: 66 YSQD--IYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKI 123
+ + D NG G + + L EV G F
Sbjct: 160 GKRPLKVVVDAGNGAAGPIAPQ----LLEALGCEVIPLFCEPDG--TF------------ 201
Query: 124 VPTG----VNIKNL--------NNKY---LSVDGDADRI--IYWYPNEDNTIHLLDGDRI 166
P + +NL N ++ DGD DR+ + D ++ GDR+
Sbjct: 202 -PNHHPDPTDPENLEDLIAAVKENGADLGIAFDGDGDRLGVV------DEKGEIIWGDRL 254
Query: 167 AVLFAMYI 174
LFA I
Sbjct: 255 LALFARDI 262
Score = 32.9 bits (76), Expect = 0.17
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
F + VR S TE ++ + EA+T E + EEI+ ++ L
Sbjct: 404 FEDGWGLVRASNTEPVLVLRFEADTEEGL----EEIKAELRKLL 443
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional.
Length = 430
Score = 33.7 bits (77), Expect = 0.11
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 236 DTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295
+ E+ + + K + + R VRPSGTE +VR+ VE E + + +I ++
Sbjct: 367 NKEVYK----HKEVFKLIKSIKDYRVIVRPSGTEPVVRVLVEGPDEEYITNIANDIAGLI 422
Query: 296 K 296
K
Sbjct: 423 K 423
Score = 29.8 bits (67), Expect = 1.6
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 18/137 (13%)
Query: 95 KIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNE 154
K+EV N + +N CG+ + K T I L+ DGD DR I+
Sbjct: 188 KVEVVN-NTPDGFNINVDCGSTHPENAKEKITNHKIAILH------DGDGDRCIFL---- 236
Query: 155 DNTIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVI 214
D GD+I L A L LK N V+ T +N ++KN I V+
Sbjct: 237 DEKGQEFHGDKIIGLTAK---HLKKEGRLK---NDVVVGTILSNMGLEVFLKNN-GIKVV 289
Query: 215 FTSTGVKHLHHEALKYD 231
T G +++ E LK +
Sbjct: 290 RTKVGDRYVLEEMLKLN 306
>gnl|CDD|188111 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
phosphate-specific. This enzyme interconverts
alpha-D-glucose-1-P and alpha-D-glucose-6-P [Energy
metabolism, Sugars].
Length = 544
Score = 32.9 bits (75), Expect = 0.18
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 264 RPSGTEDIVRIYVEA-ETSEDVNALTEEIQQVV 295
RPSGTED+ +IY E+ + E + + +E ++V
Sbjct: 507 RPSGTEDVYKIYCESFKGEEHLKQIEKEAVEIV 539
>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 32.7 bits (74), Expect = 0.20
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 257 NNARSFVRPSGTEDIVRIYVEAET----SEDVNALTEEIQQ 293
N R +RPSGTE ++R+ VEA+ + + L E+++Q
Sbjct: 400 NRGRVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQ 440
Score = 28.4 bits (63), Expect = 5.0
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 109 LNFQCGAD-FAKTKKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIA 167
+N CGA + KK V + + +S+DGDADRII D +DGD I
Sbjct: 211 INVGCGATCVSNIKKAV-----KEQKADLGISLDGDADRIII----VDENGQEIDGDGIL 261
Query: 168 VLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEA 227
+ A Y + + N ++ T TN + N+ + I I + G +++ +
Sbjct: 262 NILAQYSD-ICGGTN-------GIVGTQMTNMSYENHYRAN-KIPFIRSKVGDRYVLEDL 312
Query: 228 LKY 230
+KY
Sbjct: 313 VKY 315
>gnl|CDD|184621 PRK14324, glmM, phosphoglucosamine mutase; Provisional.
Length = 446
Score = 31.9 bits (73), Expect = 0.39
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
R +R SGTE+ +RI +E +D L +++Q++V+
Sbjct: 405 RHLIRYSGTENKLRILLEG---KDEKLLEKKMQELVE 438
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 441
Score = 31.1 bits (71), Expect = 0.80
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 263 VRPSGTEDIVRIYVEAETSEDVNALTEEIQQVV 295
V P E + IY E E LTE + V
Sbjct: 409 VLPDADEPLCHIYAEGSDQERAEELTEFYVEKV 441
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 29.9 bits (68), Expect = 1.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 264 RPSGTEDIVRIYVEAETSEDVNALTEE 290
RPSG +R YVEA++ E L
Sbjct: 431 RPSGNAPELRCYVEADSEERARELLAR 457
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 27.6 bits (62), Expect = 8.2
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 18/129 (13%)
Query: 182 NLKDKVNIKVI--------QTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKYDTI 233
L +K NI+VI ++ G N D F L ++
Sbjct: 128 ALLEKPNIEVILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEE 187
Query: 234 NADTEIVEPLGMQDSINKSVA-----KFNNARSFVRPSGTEDIVRIYVEAETSEDVNALT 288
A+ + M ++ + + KF + R + +I I + E +
Sbjct: 188 EAEVKRA----MIEAAREVILLADSSKFGR-VAPARVAPLSEIDTIITDKGLPEALLEAL 242
Query: 289 EEIQQVVKT 297
E V
Sbjct: 243 EAKGVEVII 251
>gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain. SecA protein
binds to the plasma membrane where it interacts with
proOmpA to support translocation of proOmpA through the
membrane. SecA protein achieves this translocation, in
association with SecY protein, in an ATP dependent
manner. This family is composed of two C-terminal alpha
helical subdomains: the wing and scaffold subdomains.
Length = 213
Score = 27.1 bits (61), Expect = 8.6
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 159 HLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTST 218
+L+G+ + + I ++I +++ K + ++ L +D+
Sbjct: 49 EILEGEDLKEIILEMIEDVIDDI-VEEYAPEKSYPEEWDLEGLEEELRELLGLDLDIDEE 107
Query: 219 GVKHLHHEALK 229
++ L E LK
Sbjct: 108 ELEGLTEEELK 118
>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD
binding domain.
Length = 162
Score = 27.0 bits (61), Expect = 8.9
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 210 NIDVIFTSTGVKH----LHHEALKYDTI--NA---DTEI 239
D+ T+TG K H A+K I NA D EI
Sbjct: 78 RADIFVTATGNKDVITREHFRAMKDGAILANAGHFDVEI 116
>gnl|CDD|236619 PRK09737, PRK09737, EcoKI restriction-modification system protein
HsdS; Provisional.
Length = 461
Score = 27.5 bits (61), Expect = 9.9
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 171 AMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALKY 230
+Y LI R +KD + Y N + +++ +FT T KH+ +AL
Sbjct: 311 VIYQKALI-RARVKDDII-----PEYLVYNLKSPDSRNISLSQLFTGTTQKHITGKALAN 364
Query: 231 DTINA-----DTEI---VEPL-GMQDSINKSVAKFNNA 259
I EI VE L D+I K V NNA
Sbjct: 365 YPIRVPPLEEQAEIVRRVEQLFAYADTIEKQV---NNA 399
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,995,248
Number of extensions: 1438740
Number of successful extensions: 1542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1521
Number of HSP's successfully gapped: 71
Length of query: 299
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 203
Effective length of database: 6,679,618
Effective search space: 1355962454
Effective search space used: 1355962454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)