RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy232
(299 letters)
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 176 bits (447), Expect = 2e-51
Identities = 80/193 (41%), Positives = 112/193 (58%), Gaps = 5/193 (2%)
Query: 41 ESEYFTHFGNAYLSYQKFLLTDNKSYSQDIYFDGANGVGGVKIKELQKIIESK-LKIEVY 99
E Y++ ++ + ++ + DI D ANGVG KI+EL + K + V
Sbjct: 192 EDGYYSKLAKSFQEIYT--ICESNNEKIDITIDAANGVGAPKIQELLEKYLHKEISFTVV 249
Query: 100 NQDVTTQGKLNFQCGADFAKTKKIVPTGVNIKNLNNKYLSVDGDADRIIYWYPNEDNTIH 159
N D LNF CGAD+ KT + +P V N N Y S DGDADR+I +Y N DN
Sbjct: 250 NGDYKQPNLLNFDCGADYVKTNQKLPKNVKPVN-NKLYASFDGDADRLICYYQNNDNKFK 308
Query: 160 LLDGDRIAVLFAMYINELIARCNL-KDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTST 218
LLDGD+++ LFA+++ +L + + K +NI V+QTAY NG+ T Y+++ L I V T T
Sbjct: 309 LLDGDKLSTLFALFLQQLFKQIDPTKISLNIGVVQTAYANGSSTKYVEDVLKIPVRCTPT 368
Query: 219 GVKHLHHEALKYD 231
GVKHLHHEA +D
Sbjct: 369 GVKHLHHEAENFD 381
Score = 85.4 bits (211), Expect = 7e-19
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 229 KYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALT 288
+ T NA+ +VEP GMQD I+K VA++ N RSFVR SGTED VR+Y EA+T +V L+
Sbjct: 477 IFKTTNAERTLVEPKGMQDEIDKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELS 536
Query: 289 EEIQQVVK 296
+ + ++VK
Sbjct: 537 KAVSELVK 544
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism,
structural genomics, riken structural
genomics/proteomics initiative, RSGI, isomerase; NMR
{Mus musculus} SCOP: d.129.2.1
Length = 112
Score = 81.2 bits (200), Expect = 1e-19
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 229 KYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALT 288
T +A+ + V P G+Q++IN V K+ AR+FVRPSGTEDIVR+Y EA + E + L
Sbjct: 27 VISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLA 86
Query: 289 EEIQQVVKTYL 299
E+ +V
Sbjct: 87 YEVSLLVFQLA 97
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 61.1 bits (149), Expect = 8e-11
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
+ A R SGTE +VRIYVEA++ E V AL EE +++V+
Sbjct: 423 YEEAWVLFRASGTEPVVRIYVEAQSPELVRALLEEARKLVE 463
Score = 30.2 bits (69), Expect = 0.94
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
DGDADR+ + ++ A+Y
Sbjct: 249 DGDADRVGVV----LPGGVFFNPHQVLTTLALYRFR 280
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 57.6 bits (140), Expect = 1e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
F + VR SGTE I+RI+ EA++ E ++++ L
Sbjct: 411 FEDGWVLVRASGTEPIIRIFSEAKSKEKAQEYLNLGIELLEKAL 454
Score = 34.9 bits (81), Expect = 0.030
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
++ DGDADR ++ D + GD+ L A + +
Sbjct: 240 VAQDGDADRAVF----IDENGRFIQGDKTFALVADAVLK 274
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 56.8 bits (138), Expect = 3e-09
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
+ VR SGTE I+RI EA+ N L E++++V+
Sbjct: 413 GKDFWFLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVE 453
Score = 35.2 bits (82), Expect = 0.021
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 73 DGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGK-LNFQCGADFAKTKKIVPTGVNIK 131
D AN VG + + + L ++Y + Q PT ++K
Sbjct: 178 DPANSVGALSTPLVAR----ALGCKIYTINGNLDPLFSARQPE----------PTFDSLK 223
Query: 132 NL-----NNKY---LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
K ++ DGDADR I+ D+ + GDR L + + +
Sbjct: 224 ETAEVVKTLKVDLGVAHDGDADRAIF----IDSEGRVQWGDRSGTLLSYWASV 272
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 53.1 bits (128), Expect = 4e-08
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSED-VNALTEEIQQVVKTYL 299
NA VRPSGTED+ ++Y E+ E + + EE ++ L
Sbjct: 479 AANAWFAVRPSGTEDVAKVYAESFLGEAHLERVLEEATALLHKAL 523
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 50.4 bits (121), Expect = 3e-07
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSED-VNALTEEIQQVVK 296
+N RPSGTED +IY E+ E+ + +E ++V
Sbjct: 523 TDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVS 564
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 49.8 bits (120), Expect = 4e-07
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
R +RPSGTE ++R+ VEA+ E + + VK L
Sbjct: 403 RVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQKL 442
Score = 32.8 bits (76), Expect = 0.12
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 138 LSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
+S+DGDADRII D +DGD I + A Y +
Sbjct: 236 ISLDGDADRIII----VDENGQEIDGDGILNILAQYSDI 270
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 49.4 bits (119), Expect = 5e-07
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 260 RSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVKTYL 299
R VRPSGTE ++R+ EA T E +A I +VVK +
Sbjct: 427 RILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEV 466
Score = 32.9 bits (76), Expect = 0.12
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYINE 176
DGD DR+I D +++DGD+I + A Y+ E
Sbjct: 261 DGDGDRLIA----VDEKGNIVDGDQIMFICAKYMKE 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 46/317 (14%), Positives = 90/317 (28%), Gaps = 122/317 (38%)
Query: 20 SQ------DIYFDGANGNHNVNSRVFEESEYFTHFGNAY-LSYQKFLLTDNKSYSQDIYF 72
SQ D+Y V+ ++ HF + Y S ++ + + + I+F
Sbjct: 1626 SQEQGMGMDLY-----KTSKAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLT--IHF 1676
Query: 73 DGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCGAD-FAKTKKIVPTGVNIK 131
G G ++I E+ Y+ + F+ D KT+KI
Sbjct: 1677 GGEKG---------KRIREN------YS-------AMIFETIVDGKLKTEKIFK------ 1708
Query: 132 NLNNKYLSVDGDADRIIYWYPNED-----NT---IHLLDGDRIAVLFAM----YIN---- 175
++ + + T + L+ A + I
Sbjct: 1709 -------EINEHSTSYTFRSEKGLLSATQFTQPALTLM---EKAAFEDLKSKGLIPADAT 1758
Query: 176 -------E---LIARCN---LKDKVNI-----KVIQTAYTNG--NCTNYIKNTLNIDVIF 215
E L + + ++ V + +Q A +NY +N +
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV- 1817
Query: 216 TSTGVKHLHHEALKY--DTINADT-EIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIV 272
EAL+Y + + T +VE + +N +
Sbjct: 1818 ----AASFSQEALQYVVERVGKRTGWLVE-----------IVNYNV------ENQQ---- 1852
Query: 273 RIYVEAETSEDVNALTE 289
YV A ++ +T
Sbjct: 1853 --YVAAGDLRALDTVTN 1867
Score = 35.8 bits (82), Expect = 0.017
Identities = 52/342 (15%), Positives = 104/342 (30%), Gaps = 127/342 (37%)
Query: 7 SYEEILNL----YNKSY--SQDIYFDGANGNHNVNSRVFEESE------------YFTHF 48
++++LNL + Y DI H + +++ +E++ Y T
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDI--------HALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 49 GNAYLSYQKF----LLTDNKSYSQDIY--FDGANGVGGVKIKELQKIIESKLKIEVYNQD 102
A + K L + + F G G +EL+ + ++ Y+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIF-GGQGNTDDYFEELRDLYQT------YHVL 183
Query: 103 V-----TTQGKLNFQCGADFAKTKKIVPTGVNIKN-LNNKYLSVDGDADRIIYWYPNEDN 156
V + L+ + +K+ G+NI L N P++D
Sbjct: 184 VGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLEN--------PSNT----PDKDY 230
Query: 157 TIHLLDGDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNI--DVI 214
+ + + + +I + V K++ +T G +Y+K ++
Sbjct: 231 LLS--------IPISCPLIGVIQLAHYV--VTAKLLG--FTPGELRSYLKGATGHSQGLV 278
Query: 215 -------------FTSTGVKHLH---------HEALKYDTINADTEIVE---------PL 243
F + K + +EA Y + I+E P
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPS 336
Query: 244 GM-----------QDSINK-----------SVAKFNNARSFV 263
M QD +NK ++ N A++ V
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Score = 35.4 bits (81), Expect = 0.021
Identities = 36/215 (16%), Positives = 64/215 (29%), Gaps = 78/215 (36%)
Query: 77 GVGGVKIKELQKIIE---------SKLKIEVYNQDVTTQGKLNF-QCG---------ADF 117
+ + +++Q + +++I + N G N G
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNLVVSGPPQSLYGLNLTL 393
Query: 118 AKTKKIVPTGVN---IK------NLNNKYLSV----------------DGDADRIIYWYP 152
K K P+G++ I +N++L V + D + +
Sbjct: 394 RKAK--APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 153 NEDNTI---HLLDGDRIAVLFAMYINELIARCNLKDKVN-IKVIQTAYTN---------- 198
+D I DG + VL I+E I C ++ V Q T+
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGS-ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 199 --GNCTNYIKNTLNIDVIFTST---------GVKH 222
G T+ K+ + VI T G K
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 30.8 bits (69), Expect = 0.73
Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 39/129 (30%)
Query: 197 TNGNCTNYIKNTLNIDVIFTSTGVKHLHHEALK---YDTINADTEIVEPLGMQDSINKSV 253
++G+ +++ L + T L+ + TE + + V
Sbjct: 12 SHGS----LEHVLLV-----PTAS-FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 254 AKFNNARSFV-------RPSGTEDIVR-IYVEAETS----EDVNALT-----------EE 290
KF +V + + ++ E E D++AL +
Sbjct: 62 GKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 291 IQQVVKTYL 299
++++K Y+
Sbjct: 119 TKELIKNYI 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 43/160 (26%)
Query: 11 ILNLYN--KSYSQ--------DIYFDGANGNHNVNSRVFEESEYFTHFGNAYLSYQKFLL 60
I++ YN K++ D YF G+H N E E T F +L + +FL
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI---EHPERMTLFRMVFLDF-RFL- 503
Query: 61 TDNKSYSQDIYFDGA--NGVGGVK--IKELQK----IIESKLKIEVYNQDVTTQGKLNF- 111
+ K I D N G + +++L+ I ++ K E + L+F
Sbjct: 504 -EQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-----LDFL 552
Query: 112 -QCGADFAKTK--KIVPTGVNIKNLNNKYLSVDGDADRII 148
+ + +K ++ L + ++ +A + +
Sbjct: 553 PKIEENLICSKYTDLLRIA-----LMAEDEAIFEEAHKQV 587
Score = 32.9 bits (74), Expect = 0.13
Identities = 52/385 (13%), Positives = 103/385 (26%), Gaps = 125/385 (32%)
Query: 6 LSYEEILNLYNKSYSQDI-----------YFDGANGNHNVNS--------RVFE------ 40
Y++IL+++ ++ + +H + S R+F
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 41 ESEYFTHFGNA-------------------------YLSYQKFLLTDNKSYSQDIYFDGA 75
E Y+ + L DN+ +++ Y
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YN--- 130
Query: 76 NGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQCG-----ADFAKTKKIV---PTG 127
V + + L ++V G L G D + K+
Sbjct: 131 -----VSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCKMDFK 183
Query: 128 V-------------NIKNLNNKYLSVDGDADRIIYWYPNEDNTIHLLDGDRIAVLFA--M 172
+ ++ L +D + N IH + + L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP 242
Query: 173 YINELIARCNLKDKVNIKVIQTAYTNGNC-----TNYIKNTLNIDVIFTSTGVKHL---- 223
Y N L+ L + N K A+ N +C T + + T D + ++ H+
Sbjct: 243 YENCLLV---LLNVQNAKAWN-AF-NLSCKILLTTRFKQVT---DFL-SAATTTHISLDH 293
Query: 224 ------HHEAL----KYDTINADT---EIVE--PLGMQDSINKSVAKFNNARSFVRPSGT 268
E KY E++ P + I +S+ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNC 352
Query: 269 EDIVRIYVEAETSEDVNALTEEIQQ 293
+ + I E+S +N L +
Sbjct: 353 DKLTTII---ESS--LNVLEPAEYR 372
Score = 31.4 bits (70), Expect = 0.42
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 222 HLHHEALKYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETS 281
H HH + D E E Q ++ F +A FV +D+ + +
Sbjct: 1 HHHHHHM-------DFETGE---HQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSK 48
Query: 282 EDVNALTEEIQQVVKTYL 299
E+++ + V T
Sbjct: 49 EEIDHIIMSKDAVSGTLR 66
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 34.7 bits (80), Expect = 0.036
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 247 DSINKSVAKF--------NNARSFVRPSGTED---IVRIYVEAETSEDVNALTEEIQQVV 295
D ++ SV+K + +R R SGT +R+Y+++ ++ ++ Q ++
Sbjct: 477 DPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKIN-QDPQVML 535
Query: 296 K 296
Sbjct: 536 A 536
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 33.0 bits (76), Expect = 0.100
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
+ + R S T +V + EA + + + ++ ++ +K
Sbjct: 435 YPDGFGLARSSNTTPVVVLRFEATSDAALARIQDDFRRALK 475
Score = 31.1 bits (71), Expect = 0.44
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYI 174
DGD DR+ ++ DR +LFA +
Sbjct: 264 DGDGDRLGVV----TKDGQIIYPDRQLMLFAEEV 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.11
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 84 KELQKIIESKLKIEVYNQD 102
+ L+K +++ LK+ Y D
Sbjct: 20 QALKK-LQASLKL--YADD 35
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 33.0 bits (76), Expect = 0.11
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 256 FNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
+ VR S T ++ + EA+T E++ + + +K
Sbjct: 413 YPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLK 453
Score = 31.0 bits (71), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMYI 174
DGD DR+ NT ++ DR+ +LFA +
Sbjct: 242 DGDGDRVGVV----TNTGTIIYPDRLLMLFAKDV 271
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 32.5 bits (74), Expect = 0.18
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 257 NNARSFVRPSGTEDI---VRIYVEAETSEDVNALTEEIQQVVK 296
+ +R R SGT + +RIY E + + E +
Sbjct: 508 DGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQ---HETATALA 547
Score = 27.8 bits (62), Expect = 5.6
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 141 DGDADRIIYWYPNEDNTIHLLDGDRIAVLFAMY 173
DGDADR + + D +AV+ A
Sbjct: 308 DGDADRNMI----LGRQFFVTPSDSLAVIAANA 336
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 30.6 bits (70), Expect = 0.57
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 188 NIKVIQTAYTNG-NCTNYIKNTLNID 212
K I+T +TN + YI TL +D
Sbjct: 182 GHKRIETLFTNDLDHGPYISETLRVD 207
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase,
phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Length = 1354
Score = 31.0 bits (69), Expect = 0.65
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 40 EESEYFTHFGNAYLSYQKFL-LTDNKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEV 98
+ Y KF+ D+K+ ++ A+G G K + K+IE K +
Sbjct: 1260 CIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTRDH 1319
Query: 99 YNQDVTTQGKLN 110
+ + G L
Sbjct: 1320 FVELAAINGALG 1331
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 27.8 bits (62), Expect = 4.7
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 225 HEALKYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVE 277
D + V P+ D F NA VRPS + + +Y
Sbjct: 304 RSLQTADIATITPDQVRPIAYID--------FENAFRTVRPSVSPKDLELYEN 348
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 27.7 bits (62), Expect = 5.0
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 225 HEALKYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVE 277
E D + + QD F+++ +R S + Y +
Sbjct: 242 RELNVEQVKCLDISAMRAITEQD--------FHSSLKRIRRSVAPQSLNSYEK 286
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 27.5 bits (61), Expect = 5.3
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 8/53 (15%)
Query: 225 HEALKYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVE 277
E N + + + D F + ++ S + + Y+
Sbjct: 335 RELKPEQVKNMSASEMRNIRLSD--------FTESLKKIKRSVSPQTLEAYIR 379
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein
structure initiative, midwest center for structural
genomics; 2.81A {Staphylococcus aureus subsp}
Length = 288
Score = 27.3 bits (60), Expect = 6.9
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 173 YINELIARCNLKDKVNI----KVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKHLHHEAL 228
NE+++R + + + KN F + + + +
Sbjct: 205 ITNEIVSRRQFMTSSTLPEAFDEVMAETKLPPTPIFHKNHETGKEDFYFIKLNQFNDDTV 264
Query: 229 KYDTINA 235
YD++N
Sbjct: 265 TYDSLND 271
>3jvf_C Interleukin-17 receptor A; cytokine, cysteine-knot growth factor,
receptor complex, disulfide bond, glycoprotein,
secreted, membrane, transmembrane; HET: MLY NAG; 3.30A
{Homo sapiens}
Length = 286
Score = 27.1 bits (59), Expect = 7.7
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 148 IYWYPNEDNTIHLLDGDRIAVLFAMYINELIARCNLKDK 186
I W D +I L+G ++VL L R K
Sbjct: 65 IEWTLQTDASILYLEGAELSVLQLNTNERLCVRFEFLSK 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,560,837
Number of extensions: 273501
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 44
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)