RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy232
         (299 letters)



>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 112

 Score = 71.9 bits (176), Expect = 1e-16
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query: 229 KYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALT 288
              T +A+ + V P G+Q++IN  V K+  AR+FVRPSGTEDIVR+Y EA + E  + L 
Sbjct: 27  VISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLA 86

Query: 289 EEIQQVVKTYL 299
            E+  +V    
Sbjct: 87  YEVSLLVFQLA 97


>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 96

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 249 INKSVAKFNNARSFVRPSGTEDIVRIYVEAETSEDVNALTEEIQQVVK 296
           ++     +      VR S T  ++ +  EA+T E++  +    +  +K
Sbjct: 39  LDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLK 86


>d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein,
           pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
          Length = 118

 Score = 29.0 bits (64), Expect = 0.31
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 70  IYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVT-TQGKLNFQCGADFAKTKKIVPTGV 128
             FDG +GV G   K +   +    K  + N D +   G  +      +A     +    
Sbjct: 28  FRFDGMHGVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIH 87

Query: 129 NIKNLNNKY---LSVDGDADRII 148
             K++        + DGDADR +
Sbjct: 88  KKKDVGTVPQFGAACDGDADRNM 110


>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 94

 Score = 27.9 bits (62), Expect = 0.48
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 80  GVKIKELQKIIESKLKIEVYNQDVTT-QGKLNFQCGADFAKTKKIVPTGVNIKNLNNK-- 136
            + + +L+ +I+ +L+I ++NQ ++T +  L  +  +DF     +    + I +LN    
Sbjct: 20  HITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 79

Query: 137 ---YLSVDGD 143
              YL+ +G+
Sbjct: 80  SMVYLAYEGE 89


>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 28.1 bits (62), Expect = 0.50
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 55  YQKFLLTD-NKSYSQDIYFDGANGVGGVKIKELQKIIESKLKIEVYNQDVTTQGKLNFQC 113
           Y K +  D   +    +  D  NGV GV   +L + +   +       D       N   
Sbjct: 5   YFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGN---FPNHHP 61

Query: 114 GADFAKTKKIVPTGVNIKNLNNKYLSVDGDADRII 148
                +  K +   V  +N  +  L+ DGD DR+ 
Sbjct: 62  DPGKPENLKDLIAKVKAEN-ADLGLAFDGDGDRVG 95


>d1p5dx3 c.84.1.1 (X:259-367) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 109

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 9/69 (13%)

Query: 163 GDRIAVLFAMYINELIARCNLKDKVNIKVIQTAYTNGNCTNYIKNTLNIDVIFTSTGVKH 222
            DR+ +LFA  +        +       +I            I        +   TG   
Sbjct: 2   PDRLLMLFAKDV--------VSRNPGADIIFDVKCTRRLIALISGY-GGRPVMWKTGHSL 52

Query: 223 LHHEALKYD 231
           +  +  +  
Sbjct: 53  IKKKMKETG 61


>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 113

 Score = 25.5 bits (55), Expect = 3.9
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 70  IYFDGANGVGGVKIKE-LQKIIESKLKIEVYNQDVTTQGKLNFQCGADFAKTKKIVPTGV 128
           I  D  +GV G  +K+ L + + +     V    +   G  +      +A          
Sbjct: 29  IRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSG 88

Query: 129 NIKNLNNKYLSVDGDADRII 148
                     + DGD DR +
Sbjct: 89  EHDFG----AAFDGDGDRNM 104


>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 113

 Score = 24.9 bits (53), Expect = 6.8
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 223 LHHEALKYDTINADTEIVEPLGMQDSINKSVAKFNNARSFVRPSGTEDIVRIYVEAETSE 282
           L  + +++    +D      + ++ S   S  +    R FV    T      + +A   E
Sbjct: 28  LLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLE 87

Query: 283 DVNALTEEIQQVVK 296
           + +A   +I + +K
Sbjct: 88  ERDAWVRDINKAIK 101


>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein
           (hisactophilin) {Dictyostelium discoideum [TaxId:
           44689]}
          Length = 118

 Score = 24.8 bits (54), Expect = 8.1
 Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 5/52 (9%)

Query: 99  YNQDVTTQGKLNFQCGADFAKTKKIVP-----TGVNIKNLNNKYLSVDGDAD 145
             + ++                  +         V+IK  ++ Y+S D    
Sbjct: 49  CGKYLSIGDHKQVYLSHHLHGDHSLFHLEHHGGKVSIKGHHHHYISADHHGH 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,114,905
Number of extensions: 52234
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 20
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)