BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2323
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 301 bits (771), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 181/497 (36%), Positives = 269/497 (54%), Gaps = 72/497 (14%)
Query: 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGV 60
M KK Y T + + +AV+ IK V V P VL+ AM + + V
Sbjct: 1 MDWKKIYEDRTCTAD-----EAVKSIKSGDRVLFAHCVAEPPVLVEAMV--ANAAAYKNV 53
Query: 61 TVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGY 119
TV + +L + PE + +F SP TR + G +++P+ +++P + +
Sbjct: 54 TVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDI 113
Query: 120 FSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEI 179
F DV ++ VSPPD +GF +G + + I+ +K V+A++ND++P
Sbjct: 114 FHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPV------------ 161
Query: 180 DYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239
VY G VHVSEID VE S+ L G
Sbjct: 162 ---------------VY-------------GDTFVHVSEIDKFVETSHPLPEIG------ 187
Query: 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQIN 299
++ E+++AI H C L+ED +TLQ+G+G IP+A+LS +K + +
Sbjct: 188 --------------LPKIGEVEAAIGKH-CASLIEDGSTLQLGIGAIPDAVLSQLKDKKH 232
Query: 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 359
LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++ T L+G K LYDF NN V++K
Sbjct: 233 LGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVD 292
Query: 360 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKG 419
Y N P+++ Q +M IN CL++D GQ+VSDS+GT+ +SG GGQVDF+RGA +DGKG
Sbjct: 293 YINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKG 352
Query: 420 KAILALPST---DVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAH 476
KAI+A+PS + +SKIVP I GA V SR YVVTEYG A++ KS + RA
Sbjct: 353 KAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRAR 412
Query: 477 ALIRIAHPQHREALERE 493
ALI IAHP ++ L+ E
Sbjct: 413 ALINIAHPDFKDELKAE 429
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 251/481 (52%), Gaps = 66/481 (13%)
Query: 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE 77
S +AV I+ ++ TPKVL++A+ H + + +T+L + + P
Sbjct: 8 SALEAVSLIRSGETLWTHSXGATPKVLLDALAKH--ALTLDNITLLQLHTEGAESLSHPS 65
Query: 78 D-DCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASG 136
+R FF TR + +G A+Y+PI L+++P +F G D A+I VSPPD G
Sbjct: 66 LLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHG 125
Query: 137 FVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVY 196
SLG +V L+ + + ++IA IN + P
Sbjct: 126 XCSLGISVEATLAACQVAGKIIAHINPQXP------------------------------ 155
Query: 197 LIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEE 256
R+ G +H+ E S L + S AT +
Sbjct: 156 ----------RTHGDGFIHIDRFAAVYEQSASL------------------PIHSFATGD 187
Query: 257 VTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFN 316
+ AI H+ EL+ D LQ G+G IP+A+LS + +LGVHTEL + G+++L
Sbjct: 188 AVSL--AIGQHVA-ELVRDGDCLQXGIGAIPDAVLSCLTGHKDLGVHTELFSDGILQLVE 244
Query: 317 SGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAI 376
GVINN+KK G++ LG + LYD+V +N V ND +IIR+N + AI
Sbjct: 245 KGVINNTKKRFYPGKLVTGFALGSQKLYDYVDDNPAVIFXDIEQVNDTSIIRKNPNVXAI 304
Query: 377 NTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSK 436
N+ L++D+TGQV +DS+GT+IYSG GGQ DF+RGA GL G++++ALPST +S+
Sbjct: 305 NSALQVDLTGQVCADSIGTKIYSGVGGQXDFIRGA--GLSEGGRSVIALPSTAAGGRISR 362
Query: 437 IVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYE 496
I + PGAGVV +RAHV Y+VTEYG A+L +S R+RA ALI IAHP RE L R+A+E
Sbjct: 363 IASVLSPGAGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSRDAFE 422
Query: 497 I 497
+
Sbjct: 423 V 423
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 258 bits (659), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 164/478 (34%), Positives = 241/478 (50%), Gaps = 66/478 (13%)
Query: 16 LISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMT 75
++S E+AV+ IK V + G P+ ++A+ ++ Q V + L
Sbjct: 15 IVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQ--QADLFQNVEIYHXLCLGEGKYXA 72
Query: 76 PEDD-CVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDA 134
PE R ++ FV +RK V A++IP+ ++P + DVA++ +S PD
Sbjct: 73 PEXAPHFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSXIRKDILHIDVAIVQLSXPDE 132
Query: 135 SGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQ 194
+G+ S G + + VI +IN + P VH
Sbjct: 133 NGYCSFGVSCDYSKPAAESAHLVIGEINRQXP------YVH------------------- 167
Query: 195 VYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPAT 254
G L+H+S++DY V Y ++S K
Sbjct: 168 ---------------GDNLIHISKLDYIVXADYPIYSLAK-------------------- 192
Query: 255 EEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKL 314
++ E++ AI + C EL+ED ATLQ+G+G IP+A L +K + +LG+HTE + GV++L
Sbjct: 193 PKIGEVEEAIGRN-CAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEXFSDGVVEL 251
Query: 315 FNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMT 374
SGVI KK++ G+ AT L G + +Y F+ N V++ Y NDP +I QN
Sbjct: 252 VRSGVITGKKKTLHPGKXVATFLXGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNXV 311
Query: 375 AINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGL 434
+IN+C+EID+ GQVVS+ +G++ +SG GGQVD++RGA GK+I A+PST +
Sbjct: 312 SINSCIEIDLXGQVVSECIGSKQFSGTGGQVDYVRGA--AWSKNGKSIXAIPSTAKNGTA 369
Query: 435 SKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALER 492
S+IVP I GA V R V YVVTEYG A L KS RQRA ALI IAHP RE L +
Sbjct: 370 SRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTK 427
>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
(Abft-2) From Porphyromonas Gingivalis. Northeast
Structural Genomics Consortium Target Pgr26
Length = 439
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 233/479 (48%), Gaps = 70/479 (14%)
Query: 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE 77
+ E V +KP + V P AMY + + ++ +TV + ++ PE
Sbjct: 14 ADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYR--QREKLENITVFHMLYFGDAPHLAPE 71
Query: 78 -DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASG 136
V F+ +R ++IP +++P +F +G+F DVA++ VS P+ G
Sbjct: 72 MRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEG 131
Query: 137 FVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVY 196
+ S G + DY + ++ C
Sbjct: 132 YCSFGVSC-----------------------------------DYTKAAAE-----CAPV 151
Query: 197 LIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFS--PGKGGWLLFSPGKGSWLLFSPAT 254
++ V +MP G+ L+H+S++ + +EV + P G L G+
Sbjct: 152 VVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPPAGSDLELRIGQN--------- 202
Query: 255 EEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKL 314
C L++D TLQ+G+G IP+A+L ++ +LG+HTE+ T GV+++
Sbjct: 203 --------------CASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRM 248
Query: 315 FNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMT 374
G+IN KK++ ++ +L+ G K LYDFV+NN +++ Y N+P +I +N RM
Sbjct: 249 IRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMV 308
Query: 375 AINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGL 434
+IN+CLE+D+ GQ S+S+G +SG GGQVDF+RGA G +I+A PST
Sbjct: 309 SINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKR--SKGGISIMAFPSTAKKGTE 366
Query: 435 SKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALERE 493
S+IVP +K GA V R V YVVTEYG A L + RQRA AL IAHP R ALE E
Sbjct: 367 SRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEE 425
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 223/499 (44%), Gaps = 87/499 (17%)
Query: 15 ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVL---------DV 65
+L + E+AV I S + + P L+ A+ D +I + V D
Sbjct: 25 KLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDT 84
Query: 66 FSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAE-------YIPIMLNDLPMVFDRG 118
Y +N ++ S FV+ R + G + Y+P + P +
Sbjct: 85 ILRYELNNR------IKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAE- 137
Query: 119 YFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSE 178
D + +VSP D G+ SLG + R ++R I ++N MPR GEA
Sbjct: 138 EIGIDTFMHTVSPMDCHGYFSLGVGNDYSSRIARSARRFIVEVNRYMPRVQGEA------ 191
Query: 179 IDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWL 238
A +H+SE+D VE L
Sbjct: 192 ---------------------------------AAIHISEVDAIVENHVPLIE------- 211
Query: 239 LFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQI 298
+ A E T I +HI +L+ D A LQ+G+G +P + +K +
Sbjct: 212 ---------MPVRSAIPEYTSI-----SHIIADLVPDGACLQMGVGALPNLVCGVLKDRN 257
Query: 299 NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRG 358
+LG+HTE+L PG++ L GV+ N +K++DRG+ T +G + +Y++++++ + +
Sbjct: 258 DLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYEYLNDHPAIFSRPV 317
Query: 359 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 418
Y NDP II QN + +IN L+ID+TG S+ + YS GGQ+DF+RGA
Sbjct: 318 DYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQLDFVRGAYA--SKG 375
Query: 419 GKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHAL 478
G++I+A PST +S+I+P I V R Y+VTE+G +L S+ +RA +
Sbjct: 376 GRSIIATPSTAAKGTVSRIIPRID--GPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRI 433
Query: 479 IRIAHPQHREALEREAYEI 497
I +AHP R+ L + A ++
Sbjct: 434 IELAHPDFRDELTQAAKKM 452
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3S8D|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/496 (27%), Positives = 213/496 (42%), Gaps = 87/496 (17%)
Query: 15 ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVL---------DV 65
+L + E+AV I S + P L+ A+ D +I + V D
Sbjct: 25 KLTTPEEAVSSIASGSHLSXGXFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDT 84
Query: 66 FSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAE-------YIPIMLNDLPMVFDRG 118
Y +N ++ S FV+ R + G + Y+P + P +
Sbjct: 85 ILRYELNNR------IKPYSXFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAE- 137
Query: 119 YFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSE 178
D +VSP D G+ SLG + R ++R I ++N PR GEA
Sbjct: 138 EIGIDTFXHTVSPXDCHGYFSLGVGNDYSSRIARSARRFIVEVNRYXPRVQGEA------ 191
Query: 179 IDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWL 238
A +H+SE+D VE L
Sbjct: 192 ---------------------------------AAIHISEVDAIVENHVPLIE------- 211
Query: 239 LFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQI 298
P + E S +HI +L+ D A LQ G+G +P + +K +
Sbjct: 212 ------------XPVRSAIPEYTSI--SHIIADLVPDGACLQXGVGALPNLVCGVLKDRN 257
Query: 299 NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRG 358
+LG+HTE+L PG++ L GV+ N +K++DRG+ T G + Y++++++ + +
Sbjct: 258 DLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAXGQQEXYEYLNDHPAIFSRPV 317
Query: 359 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 418
Y NDP II QN + +IN L+ID+TG S+ YS GGQ+DF+RGA
Sbjct: 318 DYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHXLGHQYSASGGQLDFVRGAYA--SKG 375
Query: 419 GKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHAL 478
G++I+A PST +S+I+P I V R Y+VTE+G +L S+ +RA +
Sbjct: 376 GRSIIATPSTAAKGTVSRIIPRID--GPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRI 433
Query: 479 IRIAHPQHREALEREA 494
I +AHP R+ L + A
Sbjct: 434 IELAHPDFRDELTQAA 449
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/509 (25%), Positives = 208/509 (40%), Gaps = 81/509 (15%)
Query: 13 SMELISKEQAVQFIKPNSLVFVEGV--VGTPKVL-----MNAMYDHVKSKNIQGVTVLDV 65
++ I+ E+A +F+ N V G G PKV+ A+ H K +
Sbjct: 2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGXFTGA 61
Query: 66 FSLYPYDNMTPEDDCVRRLSFFVSPYT-----RKYVNTGAAEYIPIMLNDLPMVFDRGYF 120
+ D + + D V+ F +PY R +N G+ Y + L+ L G++
Sbjct: 62 STGARLDGVLAQADAVK----FRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFY 117
Query: 121 SP-DVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEI 179
DVA+I V+ G + T V L ++ R + R+I ++ND+ P+ +
Sbjct: 118 GKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEI------XGXH 171
Query: 180 DYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239
D E L R VY +GK V V P K ++
Sbjct: 172 DLCEPLDPPARRELPVYT-------PSDRIGKPYVQVD--------------PAKIVGVV 210
Query: 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDE-----LLEDEATLQIGLGKIPEAILSNI 294
+ F+P I +A + E + +D LQ G+G + A+L +
Sbjct: 211 RTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEXKAGRIPKDFLPLQSGVGNVANAVLGAL 270
Query: 295 KHQINL---GVHTELLTPGVIKLFNSGVI---NNSKKSIDRG---QITATLLLGDKPLYD 345
++ +TE++ VI L G I + S+ R I A L D
Sbjct: 271 GDNPDIPAFNXYTEVIQDAVIALXKKGRIKFASGCSLSVSRSVIQDIYANL--------D 322
Query: 346 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQ 404
F + L++ + YSN+P I+R+ +T INT LE DI G + S + GTR +G GG
Sbjct: 323 FFKDKILLRPQE--YSNNPEIVRRLGVIT-INTALEADIFGNINSTHVSGTRXXNGIGGS 379
Query: 405 VDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCA 464
DF R + +I PS +S VP + A S V+ +++E+G A
Sbjct: 380 GDFTRNSYV-------SIFTTPSVXKDGKISSFVPXV---AHHDHSEHSVKVIISEWGVA 429
Query: 465 DLFAKSTRQRAHALI-RIAHPQHREALER 492
DL K+ R+RAH +I + HP +R L +
Sbjct: 430 DLRGKNPRERAHEIIDKCVHPDYRPLLRQ 458
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 279 LQIGLGKIPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL 336
LQ G+G + A+L +K NL ++E++ G++ + +SG + + S A
Sbjct: 266 LQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAE 325
Query: 337 LLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGT 395
+ ++ DF + + +++ SN P IIR+ A+N +E DI G V S +G+
Sbjct: 326 EINNR--MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGS 380
Query: 396 RIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQ 455
++ +G GG DF R + +I PST +S IVP A V Q
Sbjct: 381 KMMNGIGGSGDFARSSYL-------SIFLSPSTAKGGKISAIVPM---AAHVDHIMQDAQ 430
Query: 456 YVVTEYGCADLFAKSTRQRAHALI-RIAHPQHREALE 491
VTE G ADL S QRA +I + AHP +R L+
Sbjct: 431 IFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 279 LQIGLGKIPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL 336
LQ G+G + A+L +K NL ++E++ G++ + +SG + + S A
Sbjct: 266 LQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAE 325
Query: 337 LLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGT 395
+ ++ DF + + +++ SN P IIR+ A+N +E DI G V S +G+
Sbjct: 326 EINNR--MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGS 380
Query: 396 RIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQ 455
++ +G GG DF R + +I PST +S IVP A V Q
Sbjct: 381 KMMNGIGGSGDFARSSYL-------SIFLSPSTAKGGKISAIVPM---AAHVDHIMQDAQ 430
Query: 456 YVVTEYGCADLFAKSTRQRAHALI-RIAHPQHREALE 491
VTE G ADL S QRA +I + AHP +R L+
Sbjct: 431 IFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 279 LQIGLGKIPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL 336
LQ G+G + A+L +K NL ++E++ G++ + +SG + + S A
Sbjct: 266 LQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAE 325
Query: 337 LLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGT 395
+ ++ DF + + +++ SN P IIR+ A+N +E DI G V S +G+
Sbjct: 326 EINNR--MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGS 380
Query: 396 RIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQ 455
++ +G GG DF R + +I PST +S IVP A V Q
Sbjct: 381 KMMNGIGGSGDFARSSYL-------SIFLSPSTAKGGKISAIVPM---AAHVDHIMQDAQ 430
Query: 456 YVVTEYGCADLFAKSTRQRAHALI-RIAHPQHREALE 491
VTE G ADL S QRA +I + AHP +R L+
Sbjct: 431 IFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
Length = 505
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 279 LQIGLGKIPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL 336
LQ G+G + A+L +K NL ++E++ G++ + +SG + + S A
Sbjct: 266 LQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAE 325
Query: 337 LLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGT 395
+ ++ DF + + +++ SN P IIR+ A+N +E DI G V S +G+
Sbjct: 326 EINNR--MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGS 380
Query: 396 RIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQ 455
++ +G GG DF R + +I PST +S IVP A V Q
Sbjct: 381 KMMNGIGGSGDFARSSYL-------SIFLSPSTAKGGKISAIVPM---AAHVDHIMQDAQ 430
Query: 456 YVVTEYGCADLFAKSTRQRAHALI-RIAHPQHREALE 491
VTE G ADL S QRA +I + AHP +R L+
Sbjct: 431 IFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 19/217 (8%)
Query: 279 LQIGLGKIPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL 336
LQ G+G + A+L +K NL ++ ++ G++ + +SG + + S A
Sbjct: 266 LQSGVGNVANAVLEGLKEGPFENLVGYSAVIQDGMLAMLDSGRMRIASASSFSLSPEAAE 325
Query: 337 LLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGT 395
+ ++ DF + + +++ SN P IIR+ A+N +E DI G V S +G+
Sbjct: 326 EINNR--MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGS 380
Query: 396 RIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQ 455
++ +G GG DF R + +I PST +S IVP A V Q
Sbjct: 381 KMMNGIGGSGDFARSSYL-------SIFLSPSTAKGGKISAIVPM---AAHVDHIMQDAQ 430
Query: 456 YVVTEYGCADLFAKSTRQRAHALI-RIAHPQHREALE 491
VTE G ADL S QRA +I + AHP +R L+
Sbjct: 431 IFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|2G39|A Chain A, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
pdb|2G39|B Chain B, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
Length = 497
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 167/425 (39%), Gaps = 62/425 (14%)
Query: 81 VRRLSFFVSPYTRKYVNTGAAEYIPIMLND-LPMVFDRGYFSPDVALISVSPPDASGFVS 139
RR F V RK +N G +I L++ + + + PD+A+I + G +
Sbjct: 83 ARRXPFQVDSTLRKAINAGEVXFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIV 142
Query: 140 LGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIV 199
T+V S +K+VI +IN L H + + E L D +Y+
Sbjct: 143 PTTSVGNSASFAIFAKQVIVEIN----------LAHSTNL---EGLHD-------IYIPT 182
Query: 200 CVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTE 259
R P + ++ +D + + P K ++ + S P E
Sbjct: 183 YRPTRTP-------IPLTRVDDRIGSTAIPIPPEKIVAIVINDQPDSPSTVLPPDGET-- 233
Query: 260 IDSAIANHICDELLEDE---------ATLQIGLGKIPEAILSNIKHQI--NLGVHTELLT 308
AIANH+ D + LQ G+G I A+ + NL ++E+L
Sbjct: 234 --QAIANHLIDFFKREVDAGRXSNSLGPLQAGIGSIANAVXCGLIESPFENLTXYSEVLQ 291
Query: 309 PGVIKLFNSGVIN-NSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAII 367
L ++G + S SI + G+ Y ++LV ++ SN P ++
Sbjct: 292 DSTFDLIDAGKLRFASGSSITLSPRRNADVFGNLERY----KDKLV-LRPQEISNHPEVV 346
Query: 368 RQNHRMTAINTCLEIDITGQVVSDSLG-TRIYSGFGGQVDFMRGALTGLDGKGKAILALP 426
R+ + INT LE DI G V S +G T+ +G GG DF R A LA+
Sbjct: 347 RR-LGIIGINTALEFDIYGNVNSTHVGGTKXXNGIGGSGDFAR----------NAHLAIF 395
Query: 427 STDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIR-IAHPQ 485
T I + + V + V +VTE G ADL + R+RA +I HP
Sbjct: 396 VTKSIAKGGNISSVVPXVSHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIENCVHPS 455
Query: 486 HREAL 490
++ L
Sbjct: 456 YQAPL 460
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 23/185 (12%)
Query: 239 LFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKI-----PEAILSN 293
LFS + W+L + E+V+ + +A D+LL +E +++ G+ PEA++
Sbjct: 97 LFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKV 156
Query: 294 IKHQINLGVH---TELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN 350
+ L H +++ FN+ V + + + RG I L + P + V
Sbjct: 157 T--DVLLASHENTAQIIDARPAARFNAEV-DEPRPGLRRGHIPGAL---NVPWTELVREG 210
Query: 351 EL--------VQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFG 402
EL + RG + P I+ +TA L + T V + L +S +G
Sbjct: 211 ELKTTDELDAIFFGRGVSYDKPIIVSXGSGVTAAVVLLAL-ATLDVPNVKLYDGAWSEWG 269
Query: 403 GQVDF 407
+ D
Sbjct: 270 ARADL 274
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 140 LGTNVVELLSVIRGSKRVIAQINDRMPRSLGEAL-----VHVSEIDYKEKLSDLIRYVCQ 194
+G+ + LL + GSK +I+ N+ +SLG AL + V + KE+ S+LI
Sbjct: 26 IGSAIARLLHKL-GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSN 84
Query: 195 VYLIVC 200
+ ++VC
Sbjct: 85 LDILVC 90
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 250 FSPATEEVTE----IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE 305
F+P T+++ + +D I+ + D+ D TL I L K+ + + +++ + E
Sbjct: 739 FAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVE 798
Query: 306 LLTPGVIKLF 315
L+ PG +K++
Sbjct: 799 LIQPGAVKVY 808
>pdb|2A74|C Chain C, Human Complement Component C3c
pdb|2A74|F Chain F, Human Complement Component C3c
pdb|2ICE|C Chain C, Crig Bound To C3c
pdb|2ICE|F Chain F, Crig Bound To C3c
pdb|2QKI|C Chain C, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|F Chain F, Human C3c In Complex With The Inhibitor Compstatin
pdb|3L3O|F Chain F, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|C Chain C, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3NMS|C Chain C, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|C Chain C, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|F Chain F, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3T4A|C Chain C, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|F Chain F, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 343
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 250 FSPATEEVTE----IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE 305
F+P T+++ + +D I+ + D+ D TL I L K+ + + +++ + E
Sbjct: 91 FAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVE 150
Query: 306 LLTPGVIKLF 315
L+ PG +K++
Sbjct: 151 LIQPGAVKVY 160
>pdb|1OOP|B Chain B, The Crystal Structure Of Swine Vesicular Disease Virus
Length = 261
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 70 PYDNMTPEDDCVRRLSF--FVSPYTRKYVNTGAAEYIPIMLNDLPMV 114
PY N P D+ R +F V P+ +TGA Y+PI + PM
Sbjct: 203 PYINSVPMDNMFRHNNFTLMVIPFAPLSYSTGATTYVPITVTVAPMC 249
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 250 FSPATEEVTE----IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE 305
F+P T+++ + +D I+ + D+ D TL I L K+ + + +++ + E
Sbjct: 663 FAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVE 722
Query: 306 LLTPGVIKLF 315
L+ PG +K++
Sbjct: 723 LIQPGAVKVY 732
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 912
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 250 FSPATEEVTE----IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE 305
F+P T+++ + +D I+ + D+ D TL I L K+ + + +++ + E
Sbjct: 660 FAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVE 719
Query: 306 LLTPGVIKLF 315
L+ PG +K++
Sbjct: 720 LIQPGAVKVY 729
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 915
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 250 FSPATEEVTE----IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE 305
F+P T+++ + +D I+ + D+ D TL I L K+ + + +++ + E
Sbjct: 663 FAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVE 722
Query: 306 LLTPGVIKLF 315
L+ PG +K++
Sbjct: 723 LIQPGAVKVY 732
>pdb|1MQT|B Chain B, Swine Vesicular Disease Virus Coat Protein
Length = 261
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 70 PYDNMTPEDDCVRRLSF--FVSPYTRKYVNTGAAEYIPIMLNDLPMV 114
PY N P D+ R +F V P+ + GA Y+PI + PM
Sbjct: 203 PYINSVPMDNMFRHNNFTLMVIPFAPLSYSAGATTYVPITVTVAPMC 249
>pdb|1EV1|2 Chain 2, Echovirus 1
Length = 254
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRRLSF--FVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N P D+ R +F + P+ + GA+ Y+PI + PM
Sbjct: 196 PYVNSVPMDNMYRHHNFTLMIIPFVPLDFSAGASTYVPITVTVAPM 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,901,342
Number of Sequences: 62578
Number of extensions: 638174
Number of successful extensions: 1477
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 39
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)