Query psy2323
Match_columns 509
No_of_seqs 219 out of 1406
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:41:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03458 YgfH_subfam succinat 100.0 2E-106 4E-111 861.4 39.8 429 15-497 1-459 (485)
2 COG0427 ACH1 Acetyl-CoA hydrol 100.0 3.7E-97 8E-102 767.2 32.2 443 1-500 6-471 (501)
3 KOG2828|consensus 100.0 3.6E-93 7.8E-98 708.8 25.5 427 15-505 25-454 (454)
4 TIGR01110 mdcA malonate decarb 100.0 3.6E-77 7.8E-82 623.2 28.1 386 15-482 23-477 (543)
5 TIGR01584 citF citrate lyase, 100.0 6.1E-76 1.3E-80 613.9 30.7 407 16-505 28-467 (492)
6 COG4670 Acyl CoA:acetate/3-ket 100.0 3E-66 6.4E-71 531.4 13.1 405 14-497 3-505 (527)
7 PF13336 AcetylCoA_hyd_C: Acet 100.0 7.5E-59 1.6E-63 421.1 10.9 153 339-494 1-154 (154)
8 PF04223 CitF: Citrate lyase, 100.0 9.3E-45 2E-49 368.6 17.2 409 16-504 5-442 (466)
9 KOG3822|consensus 100.0 4.4E-39 9.6E-44 317.5 9.7 375 17-479 41-490 (516)
10 TIGR02428 pcaJ_scoB_fam 3-oxoa 100.0 2.9E-37 6.3E-42 297.7 8.1 177 260-479 2-193 (207)
11 COG3051 CitF Citrate lyase, al 100.0 4E-36 8.7E-41 299.1 16.2 404 17-507 51-490 (513)
12 PF02550 AcetylCoA_hydro: Acet 100.0 5.8E-35 1.3E-39 280.6 14.2 175 3-182 1-186 (198)
13 PRK09920 acetyl-CoA:acetoacety 99.9 1.1E-24 2.4E-29 211.2 14.6 158 15-180 4-204 (219)
14 COG2057 AtoA Acyl CoA:acetate/ 99.9 3.3E-25 7.1E-30 211.3 8.2 180 259-478 6-198 (225)
15 TIGR02429 pcaI_scoA_fam 3-oxoa 99.9 3E-23 6.6E-28 201.7 12.2 156 16-180 6-207 (222)
16 COG1788 AtoD Acyl CoA:acetate/ 99.9 3.9E-22 8.5E-27 189.7 13.0 158 15-180 4-204 (220)
17 PF01144 CoA_trans: Coenzyme A 99.4 2.5E-13 5.4E-18 132.3 3.9 147 17-168 2-197 (217)
18 PF01144 CoA_trans: Coenzyme A 96.4 0.0015 3.1E-08 63.7 1.6 130 263-414 3-149 (217)
19 TIGR01110 mdcA malonate decarb 96.3 0.051 1.1E-06 59.0 12.8 166 262-460 28-205 (543)
20 PRK10906 DNA-binding transcrip 96.2 0.026 5.7E-07 56.5 9.5 155 259-462 76-233 (252)
21 TIGR01584 citF citrate lyase, 95.9 0.024 5.3E-07 61.2 8.1 154 272-459 39-209 (492)
22 PF00455 DeoRC: DeoR C termina 95.7 0.023 5.1E-07 52.9 6.0 126 18-164 9-137 (161)
23 COG1349 GlpR Transcriptional r 95.3 0.099 2.2E-06 52.3 9.6 156 258-464 75-235 (253)
24 cd01398 RPI_A RPI_A: Ribose 5- 95.2 0.13 2.9E-06 50.1 9.8 113 17-164 4-118 (213)
25 TIGR03458 YgfH_subfam succinat 94.8 0.11 2.4E-06 56.8 8.7 129 266-414 6-152 (485)
26 PRK10681 DNA-binding transcrip 94.6 0.072 1.6E-06 53.2 6.4 126 18-163 82-209 (252)
27 PLN02384 ribose-5-phosphate is 94.6 0.24 5.3E-06 49.7 9.8 113 17-163 38-152 (264)
28 COG3051 CitF Citrate lyase, al 94.5 0.059 1.3E-06 55.8 5.4 166 272-466 61-238 (513)
29 TIGR00021 rpiA ribose 5-phosph 94.5 0.28 6.1E-06 48.1 10.0 111 18-163 5-117 (218)
30 PF04223 CitF: Citrate lyase, 94.3 0.072 1.6E-06 56.2 5.6 155 272-459 16-186 (466)
31 PRK10906 DNA-binding transcrip 94.2 0.14 3.1E-06 51.2 7.3 122 18-163 81-208 (252)
32 PRK09920 acetyl-CoA:acetoacety 94.1 0.51 1.1E-05 46.3 10.8 156 267-459 10-215 (219)
33 PRK10434 srlR DNA-bindng trans 94.1 0.19 4E-06 50.5 7.9 123 19-164 82-209 (256)
34 PRK10411 DNA-binding transcrip 93.1 0.43 9.3E-06 47.4 8.6 125 18-164 83-210 (240)
35 PRK13509 transcriptional repre 93.0 0.35 7.5E-06 48.4 7.9 124 19-164 84-208 (251)
36 PRK13978 ribose-5-phosphate is 92.8 0.89 1.9E-05 44.9 10.1 112 17-163 10-123 (228)
37 PRK09802 DNA-binding transcrip 92.7 0.33 7.1E-06 49.1 7.2 122 19-164 97-224 (269)
38 PRK00702 ribose-5-phosphate is 92.5 0.79 1.7E-05 45.0 9.4 111 17-163 9-121 (220)
39 PF00455 DeoRC: DeoR C termina 91.9 0.31 6.7E-06 45.4 5.5 157 259-461 4-160 (161)
40 COG1349 GlpR Transcriptional r 91.7 0.35 7.6E-06 48.4 6.0 118 17-163 80-208 (253)
41 TIGR02429 pcaI_scoA_fam 3-oxoa 91.4 2.7 5.9E-05 41.3 11.8 161 268-460 12-219 (222)
42 COG4670 Acyl CoA:acetate/3-ket 91.3 0.43 9.4E-06 51.3 6.4 74 373-462 171-245 (527)
43 COG1788 AtoD Acyl CoA:acetate/ 91.3 2.2 4.8E-05 41.7 10.6 159 266-460 9-216 (220)
44 COG0120 RpiA Ribose 5-phosphat 86.9 3.6 7.7E-05 40.5 8.7 114 14-163 6-121 (227)
45 PRK09802 DNA-binding transcrip 86.2 1.3 2.8E-05 44.8 5.5 157 259-464 91-250 (269)
46 PRK10681 DNA-binding transcrip 85.1 1.4 3.1E-05 43.9 5.2 49 259-308 77-125 (252)
47 TIGR02428 pcaJ_scoB_fam 3-oxoa 83.9 2 4.3E-05 41.8 5.4 124 19-161 7-141 (207)
48 PRK10434 srlR DNA-bindng trans 83.6 2 4.4E-05 43.0 5.5 48 259-307 76-123 (256)
49 PRK00702 ribose-5-phosphate is 81.4 2.4 5.2E-05 41.7 5.0 39 258-297 4-42 (220)
50 PRK10411 DNA-binding transcrip 80.9 2.8 6.1E-05 41.6 5.3 154 259-462 78-234 (240)
51 COG2057 AtoA Acyl CoA:acetate/ 80.3 9 0.0002 37.6 8.4 45 120-164 98-149 (225)
52 PRK13509 transcriptional repre 80.1 3.1 6.8E-05 41.5 5.4 47 259-307 78-124 (251)
53 PF02550 AcetylCoA_hydro: Acet 78.8 5.8 0.00013 38.0 6.7 114 265-390 12-143 (198)
54 PRK08335 translation initiatio 78.7 8.2 0.00018 39.2 7.9 79 373-465 179-270 (275)
55 cd01398 RPI_A RPI_A: Ribose 5- 71.3 6.2 0.00013 38.5 4.7 45 261-306 2-51 (213)
56 PRK08335 translation initiatio 67.9 51 0.0011 33.5 10.6 93 20-139 101-195 (275)
57 COG1184 GCD2 Translation initi 67.5 48 0.001 34.1 10.3 149 258-463 103-286 (301)
58 PLN02384 ribose-5-phosphate is 67.5 18 0.0004 36.5 7.2 37 259-296 34-70 (264)
59 TIGR00021 rpiA ribose 5-phosph 65.2 10 0.00023 37.2 4.9 36 261-297 2-37 (218)
60 TIGR00524 eIF-2B_rel eIF-2B al 61.4 41 0.00088 34.7 8.6 19 259-278 103-121 (303)
61 TIGR00512 salvage_mtnA S-methy 57.1 34 0.00073 35.8 7.2 18 259-277 127-144 (331)
62 PRK05720 mtnA methylthioribose 56.0 50 0.0011 34.7 8.3 46 259-306 131-188 (344)
63 COG1184 GCD2 Translation initi 52.4 1.6E+02 0.0034 30.4 11.0 123 18-168 109-237 (301)
64 TIGR00524 eIF-2B_rel eIF-2B al 44.9 2.4E+02 0.0051 29.1 11.1 123 20-168 110-247 (303)
65 PF04967 HTH_10: HTH DNA bindi 44.1 17 0.00038 27.5 2.0 39 459-498 13-52 (53)
66 TIGR00511 ribulose_e2b2 ribose 41.3 2.4E+02 0.0051 29.0 10.4 121 20-168 107-233 (301)
67 KOG4169|consensus 41.2 74 0.0016 31.7 6.3 134 351-502 55-218 (261)
68 PRK13978 ribose-5-phosphate is 36.8 38 0.00083 33.5 3.6 37 260-297 7-43 (228)
69 PRK08535 translation initiatio 36.6 2.7E+02 0.0058 28.7 10.0 122 19-168 111-238 (310)
70 COG0427 ACH1 Acetyl-CoA hydrol 34.1 1.3E+02 0.0027 33.2 7.3 148 265-439 19-184 (501)
71 PF01008 IF-2B: Initiation fac 30.2 2.9E+02 0.0062 27.6 8.9 121 19-168 98-226 (282)
72 PRK05720 mtnA methylthioribose 27.0 7.2E+02 0.016 26.1 11.4 95 20-139 138-243 (344)
73 TIGR03595 Obg_CgtA_exten Obg f 23.3 66 0.0014 25.5 2.2 24 14-37 40-65 (69)
74 TIGR03087 stp1 sugar transfera 23.0 78 0.0017 33.1 3.4 73 422-497 300-376 (397)
75 TIGR00512 salvage_mtnA S-methy 22.5 8E+02 0.017 25.7 10.6 122 20-167 134-274 (331)
No 1
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=100.00 E-value=1.6e-106 Score=861.36 Aligned_cols=429 Identities=28% Similarity=0.374 Sum_probs=392.2
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHh----cCCCcceEEEEeecCCCCCCCCCC-CCcEEEe-cc
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVK----SKNIQGVTVLDVFSLYPYDNMTPE-DDCVRRL-SF 86 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~----~~~~kdLtl~~~~~~g~~~~~~~~-~~~v~~~-s~ 86 (509)
|++|++||+++|||||+|++||+ +++|.+|++||++|++ ++++++|+++++.+.++..+.... .+++++. +|
T Consensus 1 KliSaeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~ 80 (485)
T TIGR03458 1 KVMSADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPY 80 (485)
T ss_pred CcCCHHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecc
Confidence 56999999999999999999998 8999999999999986 235689999998887663333223 5788876 79
Q ss_pred ccCHHHHHHHHcCCceeecCCCChHHHHHHccC-CCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEEEecccC
Q psy2323 87 FVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGY-FSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRM 165 (509)
Q Consensus 87 f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~-~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIvEVn~~v 165 (509)
|.++.+|+++++|+++|+|.+|++++++++++. .++|||+++|||||++||||||.++++.++++++||+||+|||++|
T Consensus 81 ~~sp~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aAk~VIvEVN~~m 160 (485)
T TIGR03458 81 QSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELADKVIVEVNTWQ 160 (485)
T ss_pred cCCHHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999999998776 4899999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceee--ecceeEEEEcCCCCCCCCCCCccccCCC
Q psy2323 166 PRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVH--VSEIDYGVEVSYELFSPGKGGWLLFSPG 243 (509)
Q Consensus 166 P~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~--~~~vd~vVe~~~p~~~p~~~~~~~~~p~ 243 (509)
|+++|. +||+++.-..|.+-++|+....||||.+.|+ .+.||+|||++.|+.+
T Consensus 161 P~~~~~-------------~~~~~~~~~~p~~~~ip~~~~~~~~G~~~i~i~~s~vd~ive~~~pl~~------------ 215 (485)
T TIGR03458 161 PLELEG-------------MHDIYEPGDPPHRRPIPITTPGDRIGTPYIQIDPDKIVAVVETNAPDRN------------ 215 (485)
T ss_pred Chhhhc-------------cccccccCCCCcCccccccCccccCCCcceeCCHHHeEEEEEcCCCCcc------------
Confidence 999763 1333333445556677788889999999998 5699999999999887
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHhhcC----CC------CeeccccCchHHHHHHhhhcc--CCeeEEeCCcchhH
Q psy2323 244 KGSWLLFSPATEEVTEIDSAIANHICDELLE----DE------ATLQIGLGKIPEAILSNIKHQ--INLGVHTELLTPGV 311 (509)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~----dg------~~lqlGiG~ip~aV~~~L~~~--~~lgihtE~~~d~~ 311 (509)
.+..++++++++||++||+ +|+ || +|||+|||+|||||+..|.++ |||||||||++|++
T Consensus 216 --------~~~~~~~~~~~~Ia~~va~-~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~~~kdLgihtem~~d~~ 286 (485)
T TIGR03458 216 --------SPFTPPDEVSQKIAGHLID-FLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDSPFENLTMYTEVIQDSM 286 (485)
T ss_pred --------CCCCCcCHHHHHHHHHHHH-HHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcCCCCCceEEeeechHhH
Confidence 7778899999999999999 876 88 999999999999999999988 99999999999999
Q ss_pred HHHHHhcCcccccccccCCceeeeccCCChhhHHHhhc----CCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCC
Q psy2323 312 IKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHN----NELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQ 387 (509)
Q Consensus 312 ~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~----n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~ 387 (509)
++|+|+|+++|+ ++++|++|++.+|+|+++ ||.+.|+|++|||||++|+++ +|+|||+|+||||+||
T Consensus 287 ~~L~~~G~i~~~--------~v~~~~~g~~~~~~~~~~~d~~n~~~~~~p~~~tn~p~vi~~~-~~vsiNsaievDL~Gq 357 (485)
T TIGR03458 287 LDLIDSGKLTFA--------SATSLTLSPEALERFYANIDFYRDKIVLRPQEISNHPEIIRRL-GVIAINTAIEADIYGN 357 (485)
T ss_pred HHHHHCCCcccc--------eEEEEEecHHHHHHHHhhhhhcCCcEEEeccceeCCHHHHhhC-CeEEEehheEeccCce
Confidence 999999999996 589999999888888777 999999999999999999998 8999999999999999
Q ss_pred ccccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEE
Q psy2323 388 VVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCAD 465 (509)
Q Consensus 388 vn~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~ 465 (509)
||||+ +|+|++||+|||.||+|||++| |||+|||+ ++| +|||||+|+ +||++|+++||||||||+|+
T Consensus 358 v~se~~~g~~~~sG~GGq~DF~rgA~~S-------iial~st~-~~g~~S~Ivp~l~---~vt~~r~dv~~vVTE~G~A~ 426 (485)
T TIGR03458 358 VNSTHVMGTKMMNGIGGSGDFARNAYLS-------IFMTPSIA-KGGKISSIVPMVS---HVDHTEHDVMVIVTEQGLAD 426 (485)
T ss_pred eeeecccCceEEecCccHHHHHHHHhhh-------hEEeeeec-CCCceeeEeecCC---CcCCchhhCCEEEecCEEEE
Confidence 99998 7999999999999999999998 99999998 888 899999997 89999999999999999999
Q ss_pred cCCCCHHHHHHHhh-ccCCCccHHHHHHHHHHH
Q psy2323 466 LFAKSTRQRAHALI-RIAHPQHREALEREAYEI 497 (509)
Q Consensus 466 LrG~~l~ErA~~li-~iAhp~fr~~L~~~a~~~ 497 (509)
|||||++|||++|| +||||+||++|.++|++.
T Consensus 427 LrG~s~~eRa~~lI~~iAhP~fR~~L~~~~~~~ 459 (485)
T TIGR03458 427 LRGLSPRERARAIIDNCAHPDYRDLLRDYYERA 459 (485)
T ss_pred ecCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 99999999999999 799999999999999988
No 2
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=100.00 E-value=3.7e-97 Score=767.20 Aligned_cols=443 Identities=32% Similarity=0.508 Sum_probs=395.5
Q ss_pred CCchhhhhhccCCCccCCHHHHhhcCCCCCEEEEc-CCCCChHHHHHHHHHhHhc--CCCcceEE--EEeecCCCCCC-C
Q psy2323 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVE-GVVGTPKVLMNAMYDHVKS--KNIQGVTV--LDVFSLYPYDN-M 74 (509)
Q Consensus 1 ~~~~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~g-g~~g~P~~Ll~AL~~r~~~--~~~kdLtl--~~~~~~g~~~~-~ 74 (509)
|.+.+.|.+| | +|++||+.+|++|++|++| +++|+|++|.+||++|.++ ..++++.+ +.+++.+.... .
T Consensus 6 ~~~~~~~~k~---~--~t~~Eaa~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l~i~~~~gas~~~~~~~~ 80 (501)
T COG0427 6 MRLRELYKKK---L--ITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGADEDLK 80 (501)
T ss_pred hhhHHHhhhh---c--CCHHHHHHhhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCceEEEEEeccccCcchhhh
Confidence 4688899998 4 7999999999999999999 5699999999999999774 34556555 45555553222 1
Q ss_pred CCC-CCcEEEeccccCHHHHHHHHcCCceeecCCCChHHHHHHccCCC-CcEEEEEecCCCCCCcEEeccCcchhHHHHh
Q psy2323 75 TPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFS-PDVALISVSPPDASGFVSLGTNVVELLSVIR 152 (509)
Q Consensus 75 ~~~-~~~v~~~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~-iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~ 152 (509)
..+ ...+++.++|..+..|+++++|.+.|+|.|||+.++.++++.+. +|+|+++++++|++|++++|.+++++.++++
T Consensus 81 ~~~a~~~~~r~p~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~~G~~i~g~svg~~~~~~~ 160 (501)
T COG0427 81 LAEAGEVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDEHGYIIPGTSVGNSKSWAE 160 (501)
T ss_pred hhcccchhhhCccccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccCCceEeeccccCCcHHHHh
Confidence 112 46788999999999999999999999999999999999988886 9999999999999999999999999999999
Q ss_pred ccCcEEEEecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeee--cceeEEEEcCCCCC
Q psy2323 153 GSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHV--SEIDYGVEVSYELF 230 (509)
Q Consensus 153 aAk~VIvEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~--~~vd~vVe~~~p~~ 230 (509)
.|++||+|||..+| .+.. +||+...+. .+.+.|+.|.++|||.|++++ ++||||||+|.++.
T Consensus 161 ~A~kVIveVN~~~p-~~~~-------------~hdi~~~~~--~r~~i~~~~~~~r~g~~~~~i~~~kI~aIVe~d~~d~ 224 (501)
T COG0427 161 GAEKVIVEVNKYMP-ALEG-------------LHDIVRVPG--MRVPIPIHRPGDRIGAPYIPIDPEKIDAIVETDEPDA 224 (501)
T ss_pred hccEEEEEhhccCc-chhh-------------ccceeeecC--CCccccccCcccccCCceeccCHHHeEEEEecCCCCC
Confidence 99999999999999 4321 233332222 566778888999999999887 58999999997766
Q ss_pred CCCCCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHh---------hcCCCCeeccccCchHHHHHHhhhc--cCC
Q psy2323 231 SPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDE---------LLEDEATLQIGLGKIPEAILSNIKH--QIN 299 (509)
Q Consensus 231 ~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~---------~i~dg~~lqlGiG~ip~aV~~~L~~--~~~ 299 (509)
. .+..++++..++||.++..| +++||.|||.|||+|||||+..|.+ ++|
T Consensus 225 p--------------------~~~~~~d~~~~~ia~~~~~f~a~ev~~grl~~~~~pLQ~GiG~i~naV~~gL~~~~~~~ 284 (501)
T COG0427 225 P--------------------LLERPPDPTTQAIAIHLLGFLASEVAHGRLIPDGLPLQSGIGNIPNAVMGGLKESPFKD 284 (501)
T ss_pred C--------------------CcCcCCChHHHHHHHHHHHHHhhhhhccccCCCCcchhhcccchHHHHHHHHhcCCccc
Confidence 5 56677888999999999996 5678999999999999999999999 799
Q ss_pred eeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeece
Q psy2323 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTC 379 (509)
Q Consensus 300 lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a 379 (509)
|++|||+++|++++|+++|++++.+|+ +.+.+|+.|++.+|+|.+.||.+.+||++|+|+|++|+|+. ++|||++
T Consensus 285 l~~~tEVlqDg~~~L~~~G~~~~as~t----s~~ls~~~~~r~~~~~~~~~~~i~lrP~~~sN~PeiIrrlg-~iaiNsa 359 (501)
T COG0427 285 LGVHTEVLQDGLVDLIEEGKVTNASKT----SFVLSFAMGSRKLYDYLNYNPRIVLRPQDYSNNPEIIRRLG-VIAINSA 359 (501)
T ss_pred ceEEEEecChhHHHHHHcCCccccccc----eEEEcHhHhhhHHHHHhhcCcceeeccccccCCHHHHHhcC-eeEeccc
Confidence 999999999999999999999999987 56889999999999999999999999999999999999997 9999999
Q ss_pred eeeecCCCccccCC-CCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEE
Q psy2323 380 LEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYV 457 (509)
Q Consensus 380 ~EvDl~G~vn~~~~-g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~v 457 (509)
+|+|+||||||+++ |+||+||+|||.||+|||++| ||++|||+ ++| ||+|||+++ |||++|+|+|||
T Consensus 360 ~evDl~G~~NSt~v~g~r~~nGiGGs~DF~RnA~~S-------I~~~pSta-~~G~IS~IVP~~~---hVd~~rhdvdvv 428 (501)
T COG0427 360 LEVDLYGAVNSTHVGGSRQMNGIGGSGDFVRNAYLS-------IFATPSTA-KGGTISRIVPMLS---HVDHTRHDVDVV 428 (501)
T ss_pred eEEEeecccccccccCceeeecCCchHhhhhcceee-------eEeccccc-CCCceeEEEecCC---CccccccceeEE
Confidence 99999999999996 667999999999999999999 99999998 888 999999999 899999999999
Q ss_pred EccceEEEcCCCCHHHHHHHhhccCCCccHHHHHHHHHHHhcC
Q psy2323 458 VTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKV 500 (509)
Q Consensus 458 VTE~Gva~LrG~~l~ErA~~li~iAhp~fr~~L~~~a~~~~~~ 500 (509)
|||||+||||||+++|||.+||+||||+||++|+++++++.++
T Consensus 429 VTE~GiAdLRGlsp~ERA~~iI~~AHPdyR~~L~ey~~ka~~~ 471 (501)
T COG0427 429 VTEYGIADLRGLSPRERAAAIIECAHPDYRPWLEEYAEKAGLL 471 (501)
T ss_pred EEeechhhhcCCCHHHHHHHHHHhcCcchHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999987543
No 3
>KOG2828|consensus
Probab=100.00 E-value=3.6e-93 Score=708.84 Aligned_cols=427 Identities=42% Similarity=0.681 Sum_probs=402.3
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC-CCcEEEeccccCHHHH
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTR 93 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~-~~~v~~~s~f~~~~~r 93 (509)
|++++.||.+.|++++.+++|+....|.+|+++++++..++.++.+++.+....|+ +...++ ...+++.++|+++..|
T Consensus 25 k~V~~~ea~~~vks~~f~~vg~~aa~PnaLl~a~~~~~~s~nLn~~~~~h~~~~g~-e~~~pe~~~~iq~ns~fvg~~ir 103 (454)
T KOG2828|consen 25 KLVPLFEAGAYVKSSGFTGVGGPAATPNALLEAVEKNNLSGNLNFILFVHASLGGE-ENAWPEYDMIIQRNSHFVGKPIR 103 (454)
T ss_pred cccChhhcccccccCCceeecccccCcHHHHHHHHHhccccccceeEEeeeccCCc-cccChhhhhhhhcCccccCcchH
Confidence 45899999999999999999999999999999999998877888888887765555 666666 7789999999999999
Q ss_pred HHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEEEecccCCCCCCCcc
Q psy2323 94 KYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEAL 173 (509)
Q Consensus 94 ~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIvEVn~~vP~~~g~~~ 173 (509)
|+++.|+++|.|.+||++|.++.+|.+++|++||+|||+||+|+|++|.+++-+++++..||+||+|||..||++.|+..
T Consensus 104 K~Vn~Gradf~pifLsevP~l~t~G~~~~d~alI~vSppde~Gfc~lG~sVdts~aa~t~skkIIa~VNt~mPrt~G~~~ 183 (454)
T KOG2828|consen 104 KAVNLGRADFFPIFLSEVPQLLTYGTYTLDFALIEVSPPDEDGFCVLGTSVDTSPAAATNSKKIIAEVNTAMPRTEGDTT 183 (454)
T ss_pred HHhhcCccccchhHHHhchHHHhcceeeceeEEEEecCCccCCceeccCCccchHHHHhccchheehhccCCCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCC--CCCCCCCCccccCCCCCCcccCC
Q psy2323 174 VHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYE--LFSPGKGGWLLFSPGKGSWLLFS 251 (509)
Q Consensus 174 i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p--~~~p~~~~~~~~~p~~~~~~~~~ 251 (509)
||.+-++++ |+.+.| ++.
T Consensus 184 Ihvshf~~~----------------------------------------v~v~~~~~~~q-------------------- 203 (454)
T KOG2828|consen 184 IHVSHFKVM----------------------------------------VIVEDPIADQQ-------------------- 203 (454)
T ss_pred eecChhHee----------------------------------------eEecccccccc--------------------
Confidence 999998877 343333 333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCc
Q psy2323 252 PATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQ 331 (509)
Q Consensus 252 ~~~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~ 331 (509)
....|.++.+++||+-+|+.|+++|+|||+|||+|||||+.++.++|||||||||++|++++|++.|.++++.|+..+|
T Consensus 204 ~~~~p~~e~ek~IgkviaenLv~ngatLQ~GIG~Ipdavl~A~~~hKdLgvhtem~~d~vl~l~~~~~~~~s~~~~~~g- 282 (454)
T KOG2828|consen 204 PGNGPQDETEKAIGKVIAENLVKNGATLQSGIGNIPDAVLAALSNHKDLGVHTEMFQDGVLDLFEKGCLTNSKKTSHRG- 282 (454)
T ss_pred CCCCCcchHHHHHHHHHHhhhccCCchhhhccccchHHHHHhccccccceehHHHhhcchHHHHHhccchhhhhhhccC-
Confidence 4456788999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhccc
Q psy2323 332 ITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGA 411 (509)
Q Consensus 332 ~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA 411 (509)
+.+|.+|+..+|+|+++||.|.++++.|+|+|+++++++++++||+++|+|++||+||+++|.|++||.|||.||.|||
T Consensus 283 -~~s~~~~~k~f~~~~nnn~~i~~~~~~~~n~~~ivrr~~~~~ains~ve~dl~~~~~s~~vg~r~lsG~GGqvDFlr~a 361 (454)
T KOG2828|consen 283 -VSSFKGGDKAFYNYLNNNPRIELRPQVFSNNPEIVRRNPKVTAINSPVEVDLTGQANSDSVGSRFLSGFGGQVDFLRNA 361 (454)
T ss_pred -ccccchhhHHHHhhhcCCceeeeccccccCCHHHHhhcccceeeccceeeeccccccccchhhHHhhccCcchhhhhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHHhhccCCCccHHHHH
Q psy2323 412 LTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALE 491 (509)
Q Consensus 412 ~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~li~iAhp~fr~~L~ 491 (509)
+.+-+|.||.|+++||++ ..|+|||||.+.+|++|.++|++++|+|||+|+|+|+|||++|||..||+++||..|+.|.
T Consensus 362 ~~g~dglgkpiialps~t-~kGqskIVP~l~~gsgVvttrah~~y~VTEhGiA~L~Gks~rqRayElI~i~~p~dre~L~ 440 (454)
T KOG2828|consen 362 KLGFDGLGKPIIALPSRT-PKGQSKIVPTLKMGSGVVTTRAHLDYLVTEHGIADLWGKSPRQRAYELIQICAPPDREALL 440 (454)
T ss_pred cccccccCCceeecCccC-CCCceeecccccccCceeeeccceeEEEecccHHHHhCCCHHHHHHHHHHhhCCchHHHHH
Confidence 999999999999999999 8899999999999999999999999999999999999999999999999988888899999
Q ss_pred HHHHHHhcCCCCCC
Q psy2323 492 REAYEILKVMPKMD 505 (509)
Q Consensus 492 ~~a~~~~~~~~~~~ 505 (509)
++|-+.+++||+++
T Consensus 441 k~afdr~kvmpsa~ 454 (454)
T KOG2828|consen 441 KAAFDRAKVMPSAH 454 (454)
T ss_pred HHHHHHHhcccCCC
Confidence 99999999999975
No 4
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=100.00 E-value=3.6e-77 Score=623.16 Aligned_cols=386 Identities=21% Similarity=0.251 Sum_probs=332.7
Q ss_pred ccCCHHHHh----hcCCCCCEEEEcCC-CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC-CCcEEEe--cc
Q psy2323 15 ELISKEQAV----QFIKPNSLVFVEGV-VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE-DDCVRRL--SF 86 (509)
Q Consensus 15 Kv~SaeEA~----~~I~dGdtI~~gg~-~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~-~~~v~~~--s~ 86 (509)
|++.+++++ +.|+|||+|++.|+ ...|..|.++|++-.. ...+||+++.....+. ..++-. .|..+.. +|
T Consensus 23 ~~~~~~~~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~-~~~~dLh~v~~~~~~~-~~~~l~~~G~a~kl~fs~ 100 (543)
T TIGR01110 23 KVVPTQNGVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDP-EKINDLHMVQSSVPLP-EHLDLFEKGIARKLDFSF 100 (543)
T ss_pred cEeeHHHHHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhCc-cccCCcEEEEecCCch-hHHHHHhcCceeeEEEee
Confidence 567777766 46999999999998 6889999998877532 3689999997633222 222211 4555433 33
Q ss_pred --ccCHHHHHHHHcCCceeecCCC--ChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccC----cEE
Q psy2323 87 --FVSPYTRKYVNTGAAEYIPIML--NDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSK----RVI 158 (509)
Q Consensus 87 --f~~~~~r~~i~~G~i~f~P~~l--s~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk----~VI 158 (509)
..++.+++++++|+++|.|+|| +.+++++. .+++||||+++|+||++||||+|.+.+++..++++|+ +||
T Consensus 101 ~g~~~~R~~~av~~G~id~iPih~~lse~pRlf~--~L~pDVALI~aSpAD~~GN~slG~s~~~~~aaaeAAk~~agiVI 178 (543)
T TIGR01110 101 AGPQSLRIAQLLEDGKLEIGAIHTYLELYSRYFV--DLTPNVSLIAAYEADRDGNLYTGPNTEDTPAIVEATAFRDGIVI 178 (543)
T ss_pred cCcchHHHHHHHHcCCeeEeehhchHhhhhhhhh--ccCCcEEEEECCcCCCCCeEEecCcccchHHHHHhhhhcCCEEE
Confidence 3577899999999999999999 99999886 6899999999999999999999999999999999998 999
Q ss_pred EEecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCcc
Q psy2323 159 AQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWL 238 (509)
Q Consensus 159 vEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~ 238 (509)
+|||++|+.. ....||.+.|| +|||++.|..-
T Consensus 179 VEVNeIVd~~-PrV~IP~s~VD----------------------------------------~VVEa~~P~~i------- 210 (543)
T TIGR01110 179 AQVNELVDKL-PRVDIPASWVD----------------------------------------FVIESPKPFYI------- 210 (543)
T ss_pred EEECccCCCC-CcEEcChhheE----------------------------------------EEEEcCCCccc-------
Confidence 9999955421 01145555555 55898776211
Q ss_pred ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCC---eeccccCchHHHHHHhhhcc-CCeeEEeCCcch-----
Q psy2323 239 LFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEA---TLQIGLGKIPEAILSNIKHQ-INLGVHTELLTP----- 309 (509)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~dg~---~lqlGiG~ip~aV~~~L~~~-~~lgihtE~~~d----- 309 (509)
.++.+.++.++++++.+||+++++ +|+||+ |||+|||.+|+||...|.++ +|||+||||++|
T Consensus 211 --------epL~e~D~a~ise~~~~ia~~v~~-~I~dg~~v~tLq~GIG~~p~AI~~~L~~~~kdLGlhtem~~~~~~np 281 (543)
T TIGR01110 211 --------EPLFTRDPANITDVQVLMAMMAIK-GIYAEYQVQRLNHGIGFNTAAIELLLPTYGESLGLKGKICKNWALNP 281 (543)
T ss_pred --------ccccCCCcccCCHHHHHHHHHHHh-hCcCCCcCceeeeccCcCHHHHHHHhcccCcCCccCceeecCccccc
Confidence 112226677889999999999999 999999 99999999999999999999 999999999999
Q ss_pred --hHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCcc----------EEee
Q psy2323 310 --GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRM----------TAIN 377 (509)
Q Consensus 310 --~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~----------vain 377 (509)
++++|+|+|+|+|. .+++|.+ .||||+++||.+.|+|.+ .+|++|++| ++||
T Consensus 282 ~p~li~lieaG~V~~~--------~v~gf~~---~mydyi~~nP~v~f~~~d-----~~i~~N~~~~q~ag~y~~dv~In 345 (543)
T TIGR01110 282 HPTLIPAIESGWVESV--------HSFGGEL---GMEDYIEARPDVFFTGPD-----GSMRSNRAFSQTAGQYAVDMFIG 345 (543)
T ss_pred CccHHHHHHcCCccce--------EeehhHh---HHHHHHhcCCCEEEecch-----hhhhhCcchhhhhcccccceeec
Confidence 99999999999996 4778877 999999999999999999 999999999 9999
Q ss_pred ceeeeecCCCccccCCCCccccccccHHHHh-----------------ccc---ccCCCCCCcEEEEeecccCCCC-ccc
Q psy2323 378 TCLEIDITGQVVSDSLGTRIYSGFGGQVDFM-----------------RGA---LTGLDGKGKAILALPSTDVSTG-LSK 436 (509)
Q Consensus 378 ~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~-----------------~gA---~~s~~~~g~~ii~~~st~~k~G-~sk 436 (509)
+++|||++||+|++++ +++||+|||+||. +|| ++|+| ||+||||+||. ++| +||
T Consensus 346 stlqiDl~Gq~sset~--~~~SG~GGq~df~~~~~grrh~~~~w~~~~rgA~~~~~s~G--gK~iI~l~st~-~~g~~s~ 420 (543)
T TIGR01110 346 STLQIDGYGNSSTATR--GRLAGFGGAPNMGHDPHGRRHATPAWLKMGAEFTDGDLPRG--RKLVVQMVETY-QEGMKPT 420 (543)
T ss_pred ceeEEecCCccchhhh--ceeccccCccccccCcccccccchhhhhhcccccccccCCC--CeEEEEeeccc-CCCCCce
Confidence 9999999999999999 6689999999999 999 99999 99999999999 888 999
Q ss_pred eeccccC----------CCccccCCCceEEEEccceEEEc-CCCCHHHHHHHhhccC
Q psy2323 437 IVPTIKP----------GAGVVCSRAHVQYVVTEYGCADL-FAKSTRQRAHALIRIA 482 (509)
Q Consensus 437 IV~~~~~----------g~~vt~~~~~v~~vVTE~Gva~L-rG~~l~ErA~~li~iA 482 (509)
|||+|++ |++||++|+||+|||||||+|+| +|+|++|||++||+||
T Consensus 421 iV~~L~~~~~~~~~~~~g~pVt~~r~Dv~~VVTE~GiA~L~~g~s~~ERa~ali~IA 477 (543)
T TIGR01110 421 FVETLDAWELAKKAGMPLAPVMIYGDDVTHIVTEEGIAYLYKCRSLEERMQAIRGVA 477 (543)
T ss_pred eecccchhhhhhhccCCCCceEeccCCcCEEeccHhHhHHhhCCCHHHHHHHHHHHh
Confidence 9999998 99999999999999999999999 9999999999999777
No 5
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=100.00 E-value=6.1e-76 Score=613.91 Aligned_cols=407 Identities=19% Similarity=0.179 Sum_probs=346.1
Q ss_pred cCCHHHHhh--cCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCC-CC-CCCCC-CCcE-EEeccccC
Q psy2323 16 LISKEQAVQ--FIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYP-YD-NMTPE-DDCV-RRLSFFVS 89 (509)
Q Consensus 16 v~SaeEA~~--~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~-~~-~~~~~-~~~v-~~~s~f~~ 89 (509)
+-|++||++ -+||||||.|++...+=+.+++...+...+.++||||+..+ ++.+ .+ +.+.- .|.+ ++.+.++.
T Consensus 28 ~~~~~eai~~~gl~dgmtisfhhh~r~gd~v~n~v~~~~~~~g~k~l~~~~s-sl~~~h~~lv~~i~~g~vt~i~~sg~~ 106 (492)
T TIGR01584 28 VDSLEEAIKKTGLKDGMTISFHHHFREGDYVVNMVMRIIADMGFKDLTLAPS-SLTSVHDPLVEHIKKGVVTGITSSGLR 106 (492)
T ss_pred cccHHHHHHHcCCcCCcEEEeeccccCccHHHHHHHHHHHHcCcCCcEEecc-cCcchhHHHHHHHhcCeEEEEEeCCcC
Confidence 368999995 49999999999985555555554444444448999999865 3343 22 11111 4554 46777899
Q ss_pred HHHHHHHHcCCceeecCCCChH--HHHHHccCCCCcEEEEEecCCCCCCcEE------eccCcchhHHHHhccCcEEEEe
Q psy2323 90 PYTRKYVNTGAAEYIPIMLNDL--PMVFDRGYFSPDVALISVSPPDASGFVS------LGTNVVELLSVIRGSKRVIAQI 161 (509)
Q Consensus 90 ~~~r~~i~~G~i~f~P~~ls~~--~~~l~~g~~~iDVAlI~vs~~De~Gn~s------lg~s~~~~~~~a~aAk~VIvEV 161 (509)
+.+.+++..|.+.-.-..-||. +++++.|.+++||||+++++||++|||+ ++.+.+|...++++|++||+||
T Consensus 107 g~~~~~is~g~l~~p~~~~shggr~r~i~~g~l~iDVAfI~Vsp~D~~Gn~sg~~G~s~~gslgya~~dA~~A~kVIaev 186 (492)
T TIGR01584 107 GTLGDEISKGILKKPVIIRSHGGRARAIETGELHIDVAFLGVPCCDEMGNANGMTGKSPCGSLGYAIVDAQYADKVVAIT 186 (492)
T ss_pred chHHHHHhcCCCCCCeEEecCCcHHHHHhcCCCCCCEEEEeCCCcccCCCCcccCCCcccCccchhHHHHHhCCEEEEEE
Confidence 9999999999876422233454 4678889999999999999999999999 6778889999999999999999
Q ss_pred cccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCC-CCCCCCCCcccc
Q psy2323 162 NDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYE-LFSPGKGGWLLF 240 (509)
Q Consensus 162 n~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p-~~~p~~~~~~~~ 240 (509)
|++||+.+|+..||.++||+| ||+|.| ++.
T Consensus 187 n~~vP~p~g~~~Ih~s~VD~V----------------------------------------VEvd~~g~p~--------- 217 (492)
T TIGR01584 187 DSLVPYPNTPASIKQTQVDYV----------------------------------------VKVDAVGDPK--------- 217 (492)
T ss_pred CCCCCCCCCCCccChhheEEE----------------------------------------EEeCCCCChh---------
Confidence 999999999889999998877 888766 331
Q ss_pred CCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhc------CCCCeeccccCchHHHHHHhhhcc-CCeeEEe----CCcch
Q psy2323 241 SPGKGSWLLFSPATEEVTEIDSAIANHICDELL------EDEATLQIGLGKIPEAILSNIKHQ-INLGVHT----ELLTP 309 (509)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i------~dg~~lqlGiG~ip~aV~~~L~~~-~~lgiht----E~~~d 309 (509)
++... .+..++++++++||+++|+ +| +||+|+|+|+|++|+||+.+|+++ +|||||| ||++|
T Consensus 218 ---~i~~g---~~r~t~~p~e~~IA~~vA~-lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~mkdlGIht~f~~g~iTd 290 (492)
T TIGR01584 218 ---KIGSG---ATRFTKDPKELLIAKMAND-VIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKMIDHNIKASFGLGGITK 290 (492)
T ss_pred ---hcccC---CCCCCCCHHHHHHHHHHHH-HHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHHHhCCCcccccCccccH
Confidence 00000 2245789999999999999 87 899999999999999999999998 9999999 99999
Q ss_pred hHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHH---HhccCccEEeeceeeeecCC
Q psy2323 310 GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAI---IRQNHRMTAINTCLEIDITG 386 (509)
Q Consensus 310 ~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~---i~~~~~~vain~a~EvDl~G 386 (509)
++++|+|+|++++. ++ +++|++|++ +|+++||.+.++|.+|+|||.. |+++++ ++||+|+|||++|
T Consensus 291 ~~vdL~e~G~vt~~---~d----V~~F~lGs~---~~i~~Np~~~~~~a~~y~nP~~~~~i~~~~d-vsInsAlEVDl~g 359 (492)
T TIGR01584 291 QMVDLHEEGLIDKL---FD----VQSFDLGAA---ESIALNPNHQEIDASWYANPANKGAMVNKLD-VVILSALEIDTKF 359 (492)
T ss_pred HHHHHHHCCCcccc---ee----EEEeecchH---HHHhcCCCeEEeccccccCCCchHHHhhCCC-eEEEeeEEEecCC
Confidence 99999999999986 33 899999999 7999999999999999999866 888876 9999999999999
Q ss_pred CccccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEE
Q psy2323 387 QVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCA 464 (509)
Q Consensus 387 ~vn~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva 464 (509)
|||+++ .+++++||+|||.||++||++| |||+||| +| +|||||+|+ .|||||++|||||||||+|
T Consensus 360 qVnv~t~s~G~~~sg~GGq~Dfa~GA~~S-------II~~ps~---~Gris~IV~~v~---~VtTpr~~Vd~VVTEyGIA 426 (492)
T TIGR01584 360 NVNVMTGSDGVIRGASGGHQDTAAGAKLS-------IIVAPLV---RGRIPTVVEKVT---TVITPGESIDVLVTEIGIA 426 (492)
T ss_pred eeeEeecCCCeEEecCchHHHHHhhhcce-------EEEEEcC---CCCcCeEeCCCC---CEECChhhCCEEEccCEEe
Confidence 999999 8999999999999999999998 9999997 35 999999997 8999999999999999999
Q ss_pred -EcCCCCHHHHHH-HhhccCCCccHHHHHHHHHHHhcCCCCCC
Q psy2323 465 -DLFAKSTRQRAH-ALIRIAHPQHREALEREAYEILKVMPKMD 505 (509)
Q Consensus 465 -~LrG~~l~ErA~-~li~iAhp~fr~~L~~~a~~~~~~~~~~~ 505 (509)
+|||++++||++ .. .|.+.+ .++|++.|+++.|.+.+..
T Consensus 427 vnlrg~~l~eR~~~~~-~l~~~~-i~~l~~~a~~~~g~p~~~~ 467 (492)
T TIGR01584 427 INPKRKDLIEKLSNKP-GIPLYT-IEELQEIAEEITGKPEPIE 467 (492)
T ss_pred cCCCCCCHHHHHhhcC-CCCccc-HHHHHHHHHHhhCCCCCCC
Confidence 999999999999 53 688888 6799999999999987754
No 6
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=100.00 E-value=3e-66 Score=531.44 Aligned_cols=405 Identities=19% Similarity=0.208 Sum_probs=343.9
Q ss_pred CccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHh-cCCCcceEEEEeecCCCCC--CCCCC--CCcEE---E
Q psy2323 14 MELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVK-SKNIQGVTVLDVFSLYPYD--NMTPE--DDCVR---R 83 (509)
Q Consensus 14 ~Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~-~~~~kdLtl~~~~~~g~~~--~~~~~--~~~v~---~ 83 (509)
+|++|++||+++|+||++|+++|| ++.|+++++||.+|++ +++++|||+++....|+.. .++.. .+.++ .
T Consensus 3 ~K~isa~ea~~~I~DG~~vavsgf~~a~~Pe~ll~al~~r~~~tghPr~Lt~i~~~~~Gd~~~~Gld~ia~~g~ik~~i~ 82 (527)
T COG4670 3 VKVISAQEAAALIKDGATVAVSGFNGAGCPEELLKALGERYLETGHPRDLTFISPTGLGDRGGRGLDHIAKEGLIKRVLG 82 (527)
T ss_pred cccccHHHHHhhCCCCCEEEeccccccCCHHHHHHHHHHHHHhhCCCCceEEEcccCCCCcccCCcchhhhhhhhhhhhc
Confidence 477999999999999999999998 6889999999999999 6899999999998888643 33332 34444 3
Q ss_pred eccccCHHHHHHHHcCCce-------------------------------eecCCCChH------------------HHH
Q psy2323 84 LSFFVSPYTRKYVNTGAAE-------------------------------YIPIMLNDL------------------PMV 114 (509)
Q Consensus 84 ~s~f~~~~~r~~i~~G~i~-------------------------------f~P~~ls~~------------------~~~ 114 (509)
.+|.++|.+.+++.+++++ |+++++... .+|
T Consensus 83 g~~g~sp~l~~li~~n~ieAYn~P~Gvl~~~~Re~aa~rPGviTkVGl~TFvDPR~~Gg~~N~~~~~~~V~~v~~~geey 162 (527)
T COG4670 83 GHWGSSPRLAKLIEENKIEAYNLPQGVLTQWLREVAAGRPGVITKVGLGTFVDPRRQGGKMNAATKEDLVELVTIDGEEY 162 (527)
T ss_pred cccCCChHHHHHHHhCchhhhcCcHHHHHHHHHHHhcCCCceEEEeccccccCccccccccccccccceEEEEEECCceE
Confidence 5788999999999999874 555554211 258
Q ss_pred HHccCCCCcEEEEEecCCCCCCcEEeccCcch--hHHHHhccC----cEEEEecccCCCCCCCccccCCcccEEeccchh
Q psy2323 115 FDRGYFSPDVALISVSPPDASGFVSLGTNVVE--LLSVIRGSK----RVIAQINDRMPRSLGEALVHVSEIDYKEKLSDL 188 (509)
Q Consensus 115 l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~--~~~~a~aAk----~VIvEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~ 188 (509)
|.|..+++||||||+|.+||.||+|+..+..+ .+.+|+||| +||+||++.+.++ ++++++|.
T Consensus 163 L~Y~a~~pdValiRgTtADe~GNit~e~E~~~~~~L~iAqAakn~gG~VIaQVkrvv~~g----sl~pk~V~-------- 230 (527)
T COG4670 163 LFYKAPKPDVALIRGTTADERGNITFEDEGAYLEGLSIAQAAKNNGGIVIAQVKRVVKKG----TLKPKDVR-------- 230 (527)
T ss_pred EEecCCCCCEEEEeccccccCCceeeehhhhhhhhHHHHHHHHhcCCeEEEEehhhhhcc----CCCcceeE--------
Confidence 88899999999999999999999999987654 688888887 8999999988753 78888886
Q ss_pred hhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCC-CCCCCCCCccccCCCC---CCcccCCCCCCCCCHHHHHH
Q psy2323 189 IRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYE-LFSPGKGGWLLFSPGK---GSWLLFSPATEEVTEIDSAI 264 (509)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p-~~~p~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~I 264 (509)
||+.+|||||+.+.| .+. ||....|||.. +..++.+..+.|. +.+|.|
T Consensus 231 -------------------------VPG~LVDyvvV~~~~~~h~--Qt~~~~ynpaisGe~~~p~~~~~~lp~-~~rkvI 282 (527)
T COG4670 231 -------------------------VPGILVDYVIVVEDPEDHW--QTGSTPYNPAISGEIFIPLSTEEPLPL-NERKVI 282 (527)
T ss_pred -------------------------cCcceeeEEEEecChhhhh--hhcccccChhhcCccccCCcccccCcc-hhHHHH
Confidence 455599998888664 777 99999999992 3344332222333 678899
Q ss_pred HHHHHHhhcCCC-CeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccCCChhh
Q psy2323 265 ANHICDELLEDE-ATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 343 (509)
Q Consensus 265 a~~va~~~i~dg-~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~l 343 (509)
|||+|. ++..| .++|||+| ||+.|..+|.| |++.|.+..++|+|.++|. +..+++||..-.
T Consensus 283 ARR~a~-eL~~~~~vvNlGvG-Ip~~v~~v~~E--------Eg~~~~v~~tvE~G~vGGi--------p~~g~~FG~a~n 344 (527)
T COG4670 283 ARRAAQ-ELRAGPAVVNLGVG-IPANVSLVARE--------EGVHDDVTLTVESGPVGGI--------PLGGLDFGAAVN 344 (527)
T ss_pred HHHHHH-HhccCceEEEeccc-cchHHHHHHHh--------cccCCceEEEEecCccCCe--------eccccccccccC
Confidence 999999 99999 99999999 99999999999 9999999999999999996 478999997755
Q ss_pred HHH-hhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEE
Q psy2323 344 YDF-VHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAI 422 (509)
Q Consensus 344 y~~-i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~i 422 (509)
.+. ++.-.||+||.++ .+ ++|+||++|||.+||||++.++++.+.|+|||+|++++|++. |
T Consensus 345 ~~A~~~~p~QFdfy~Gg---------gl--D~a~LgfaqvD~~GNVNvS~f~~~~~aG~GGFi~It~~a~~i-------v 406 (527)
T COG4670 345 PEAILDMPDQFDFYEGG---------GL--DAAYLGFAQVDRHGNVNVSKFGGSVIAGCGGFIDITQGAKKI-------V 406 (527)
T ss_pred hhhccCCcceeeeecCC---------ch--hhhhhhhhhccCCCcccHhhcCCccccCCCCceehhcCcceE-------E
Confidence 444 4666699999996 44 799999999999999999999977789999999999999999 9
Q ss_pred EEeecccC--------------CCC-ccceeccccCCCccccC------CCceEEEEccceEEEcC--CCCHHHHHHHhh
Q psy2323 423 LALPSTDV--------------STG-LSKIVPTIKPGAGVVCS------RAHVQYVVTEYGCADLF--AKSTRQRAHALI 479 (509)
Q Consensus 423 i~~~st~~--------------k~G-~skIV~~~~~g~~vt~~------~~~v~~vVTE~Gva~Lr--G~~l~ErA~~li 479 (509)
||+++|++ ++| ++|||+.++ ++||+ ..+..+|||||+||+|+ |+.|.|+||+++
T Consensus 407 F~GtftAG~~~~~i~dGrL~I~~EG~~kKfV~~V~---~itFsg~~A~~~~q~V~YVTERaVF~Lt~~GL~L~EIAPGvD 483 (527)
T COG4670 407 FCGTFTAGGLKVEIADGRLNIEQEGRVKKFVRDVE---HITFSGKYALEQGQDVLYVTERAVFKLTPDGLTLIEIAPGVD 483 (527)
T ss_pred EEeeeccCcceEEEecCeEEEEeccchhhhhhhhh---eeeechHHHHhcCCcEEEEEeeEEEEEcCCCEEEEEecCCCC
Confidence 99999983 578 899999999 99998 56788899999999998 999999999999
Q ss_pred ---c-cCCCccHHHHHHHHHHH
Q psy2323 480 ---R-IAHPQHREALEREAYEI 497 (509)
Q Consensus 480 ---~-iAhp~fr~~L~~~a~~~ 497 (509)
| |++|+|++.+.++.|.|
T Consensus 484 lekDIL~qmef~piia~~Lk~M 505 (527)
T COG4670 484 LEKDILDQMEFEPIIADDLKEM 505 (527)
T ss_pred hhhhHHhccCCCcccccccccc
Confidence 6 89999999998777654
No 7
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=100.00 E-value=7.5e-59 Score=421.06 Aligned_cols=153 Identities=52% Similarity=0.857 Sum_probs=136.1
Q ss_pred CChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCC
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 418 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~ 418 (509)
|+++||+|+|+||.|.|+|++|||||.+|+++++|+|||+|+||||+||||+|++|++++||+|||.||++||++|+|
T Consensus 1 Gs~~lY~~~d~np~i~~~p~~~~n~p~~ia~~~~~vsINsaievDL~Gqv~se~ig~~~~sG~GGq~DF~~gA~~s~g-- 78 (154)
T PF13336_consen 1 GSQRLYDWLDDNPSIEFRPVDYVNDPEVIARNDNMVSINSAIEVDLTGQVNSESIGGRQVSGIGGQLDFVRGAYLSKG-- 78 (154)
T ss_dssp S-HHHHHHHTTCTTEEE-BHHHHT-HHHHTTSTTEEEEEE-SEEETTS-EESSEETTEESSGGTTHHHHHHHHHHSTT--
T ss_pred CcHHHHHHHhcCCCeEEeCcceeCCHHHHhCcCCcEEEecceEEecCcceeecccCCceEecCccHHHHHHHHHhCCC--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHHhhccCCCccHHHHHHHH
Q psy2323 419 GKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREA 494 (509)
Q Consensus 419 g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~li~iAhp~fr~~L~~~a 494 (509)
||||||||||+ ++| +|||||++++|++||++|+++||||||||+|+|||+|++|||++||+||||+||++|.++|
T Consensus 79 G~sIial~St~-~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVTEyGvA~LrG~s~~eRA~aLI~iAHP~fR~~L~~~A 154 (154)
T PF13336_consen 79 GKSIIALPSTA-KDGTISRIVPRLPPGAPVTTPRHDVDYVVTEYGVADLRGKSIRERAEALISIAHPDFRDELREEA 154 (154)
T ss_dssp -EEEEE--SEE-TTTTEESEESS-STTSSESB-TTT-SEEEETTEEEE-TT--HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CceEEEEeccc-CCCCccceeeeecCCCCcccCcccCCEEEcCCEEEEeCCCCHHHHHHHHHHccCccHHHHHHhhC
Confidence 99999999999 889 8999999999999999999999999999999999999999999999999999999999987
No 8
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=100.00 E-value=9.3e-45 Score=368.60 Aligned_cols=409 Identities=18% Similarity=0.178 Sum_probs=271.7
Q ss_pred cCCHHHHhh--cCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC--CCcE-EEeccccCH
Q psy2323 16 LISKEQAVQ--FIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE--DDCV-RRLSFFVSP 90 (509)
Q Consensus 16 v~SaeEA~~--~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~--~~~v-~~~s~f~~~ 90 (509)
+-|++||++ .+||||||.|++....=+.+++...+...+.++||||+..+.....++-+-+. .|.+ ++.+.++.+
T Consensus 5 ~~sl~eAi~~~glkDGMTISFHHH~RnGD~V~nmVm~~i~~mGiKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~rG 84 (466)
T PF04223_consen 5 VASLEEAIEKSGLKDGMTISFHHHLRNGDYVLNMVMDEIAEMGIKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMRG 84 (466)
T ss_dssp ESSHHHHHHHTT--TT-EEEE--TTGGGB-HHHHHHHHHHHTT--SEEEEES---GGGGGHHHHHHTTSEEEEEESEEHH
T ss_pred hhhHHHHHHHcCCcCCcEEEeehhccCccHHHHHHHHHHHHcCCCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcCc
Confidence 468999995 49999999999875444444444433333338999999866433323222111 5665 456778999
Q ss_pred HHHHHHHcCCceeecCCCChHH--HHHHccCCCCcEEEEEecCCCCCCcEE--eccC----cchhHHHHhccCcEEEEec
Q psy2323 91 YTRKYVNTGAAEYIPIMLNDLP--MVFDRGYFSPDVALISVSPPDASGFVS--LGTN----VVELLSVIRGSKRVIAQIN 162 (509)
Q Consensus 91 ~~r~~i~~G~i~f~P~~ls~~~--~~l~~g~~~iDVAlI~vs~~De~Gn~s--lg~s----~~~~~~~a~aAk~VIvEVn 162 (509)
.+.+++.+|.+.-.-..-||.. +.+..|.+++|||||.++.+|+.||++ .|.+ .+|....|+.|++||+-.+
T Consensus 85 ~lg~aiS~G~l~~Pvi~rSHGGR~raIe~Ge~~IDVAFi~AP~~D~~GN~nG~~G~saCGsLGYa~~DA~yA~~VV~iTD 164 (466)
T PF04223_consen 85 PLGEAISEGKLKKPVIIRSHGGRARAIESGELHIDVAFIAAPSCDEYGNANGVGGKSACGSLGYAMVDAQYADKVVAITD 164 (466)
T ss_dssp HHHHHHHCT--SS-EEE-BHHHHHHHHHCTSS--SEEEEEESEEETTS-EESSSSSS--S--CCHHHHHHH-SEEEEEES
T ss_pred hHHHHHhCCCCCCCEEEeCCCCchhheecCCcceEEEEEcCCccccccCcCCCcCCccccccccchhhHHhcCcEEEEec
Confidence 9999999998874223346664 578899999999999999999999997 3433 4589999999999999999
Q ss_pred ccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccccCC
Q psy2323 163 DRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSP 242 (509)
Q Consensus 163 ~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~~~p 242 (509)
..+|+.+-+.+|+...|||+ |+.|. .. ||
T Consensus 165 ~Lv~yP~~p~sI~q~~VDyV----------------------------------------V~Vd~-IG----------DP 193 (466)
T PF04223_consen 165 NLVPYPNTPASIPQTQVDYV----------------------------------------VVVDS-IG----------DP 193 (466)
T ss_dssp SEE-SS-SS-SB-GGG-SEE----------------------------------------EE-S--SC-----------C
T ss_pred CCCCCCCCCCCcccceeeEE----------------------------------------EEecc-cc----------Ch
Confidence 99999877777777777776 44432 11 22
Q ss_pred CCCCcccCCCCCCCCCHHHHHHHHHHHHh-----hcCCCCeeccccCchHHHHHHhhhcc---CCe--eEEeCCcchhHH
Q psy2323 243 GKGSWLLFSPATEEVTEIDSAIANHICDE-----LLEDEATLQIGLGKIPEAILSNIKHQ---INL--GVHTELLTPGVI 312 (509)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~Ia~~va~~-----~i~dg~~lqlGiG~ip~aV~~~L~~~---~~l--gihtE~~~d~~~ 312 (509)
+++... ....+.++.+..||+++|++ +++||..+|.|.|+.+.||+.+|++. +++ ++-.++++..++
T Consensus 194 ~kI~sG---atr~T~~P~~L~IA~~aa~vI~asg~~kdGFSfQtGaGGaSLAv~~~l~~~M~~~~Ik~sFa~GGIT~~~v 270 (466)
T PF04223_consen 194 AKIVSG---ATRITKDPRELLIAEYAAKVIEASGYFKDGFSFQTGAGGASLAVARFLREKMREKGIKGSFALGGITGYMV 270 (466)
T ss_dssp HHHCS-----------HHHHHHHHHHHHHHHCTTT-STTEEEE--SSHHHHHHHHHHHHHHHHTT--EEEEECEE-HHHH
T ss_pred hhcccC---CccccCChHHHHHHHHHHHHHHhCcceecCceEEcCCchHHHHHHHHHHHHHHHcCcEEEEECCcccHHHH
Confidence 232222 34456788999999999995 56999999999999999999999873 565 377899999999
Q ss_pred HHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCC-cEEEeeccccCcH---HHHhccCccEEeeceeeeecCCCc
Q psy2323 313 KLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTYSNDP---AIIRQNHRMTAINTCLEIDITGQV 388 (509)
Q Consensus 313 ~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~-~~~~~~~~~~n~p---~~i~~~~~~vain~a~EvDl~G~v 388 (509)
+|+|+|.+... +| +++|++.+. +.+.+|| ++++....|.|.- .+..++ ++.||||+|||...||
T Consensus 271 ~mleeGL~~~l---~D----vQ~FDl~Av---~S~~~np~H~eisas~YAnP~nkg~~vn~L--D~viLgAlEvD~dFNV 338 (466)
T PF04223_consen 271 DMLEEGLFRKL---LD----VQCFDLDAV---ESIRENPNHQEISASEYANPHNKGAVVNQL--DVVILGALEVDTDFNV 338 (466)
T ss_dssp HHHHTTSECEE---EE----CEESSHHHH---HHHHHTTTEEE--HHHHC-TTSS--GGGG---SEEEE--SEEETT--E
T ss_pred HHHHcccchhh---ee----cccCCHHHH---HHHHhCCCcEEEcHHHhcCCCCCCcccccc--cEEEEeeeeeccccce
Confidence 99999999875 23 788888777 6676777 8889999988874 466677 7999999999999999
Q ss_pred cccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEE-Ec
Q psy2323 389 VSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCA-DL 466 (509)
Q Consensus 389 n~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva-~L 466 (509)
|+-+ ..|.+..|+||+.|.+.||+++ |++.|+++ ++++.||++++ .|+||...||++|||||+| +.
T Consensus 339 NV~TgSdG~i~Ga~GGH~DtAagAklt-------Iiv~PL~r--gRip~v~d~V~---tv~TPGetVDVlVTe~GIAVNP 406 (466)
T PF04223_consen 339 NVLTGSDGVIRGASGGHPDTAAGAKLT-------IIVAPLVR--GRIPTVVDKVT---TVTTPGETVDVLVTERGIAVNP 406 (466)
T ss_dssp E-SB-TTS-B-CE-CTHHHHHHHSSEE-------EEE--SEE--TTEESEESS-S---S-SB-GGG--EEEETTEEEE-T
T ss_pred eEEECCCceEecCCCCCcchhhhcCeE-------EEEchhhc--CCCCEEeCcee---EEcCCCCceeEEEecCceeeCC
Confidence 9988 7899999999999999999999 99999997 56999999999 9999999999999999999 77
Q ss_pred CCCCHHHHHHHhhccCCCccHHHHHHHHHHHhcCCCCC
Q psy2323 467 FAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPKM 504 (509)
Q Consensus 467 rG~~l~ErA~~li~iAhp~fr~~L~~~a~~~~~~~~~~ 504 (509)
+...|.|+.+.- .|...+ -++|++.|+++.|.|-+.
T Consensus 407 ~R~DL~e~l~~a-~lp~~~-IeeL~~~A~~i~G~P~~i 442 (466)
T PF04223_consen 407 RRPDLIERLKKA-GLPLKT-IEELKEKAEKITGKPDPI 442 (466)
T ss_dssp T-HHHHHHCCCT-TS-EE--HHHHHHHHHHHH-S----
T ss_pred CCHHHHHHHHhC-CCCEEE-HHHHHHHHHHhcCCCCCC
Confidence 777777765543 377777 779999999999987664
No 9
>KOG3822|consensus
Probab=100.00 E-value=4.4e-39 Score=317.47 Aligned_cols=375 Identities=18% Similarity=0.231 Sum_probs=274.0
Q ss_pred CCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCC-CC--CCCCCCCcEEE--------
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYP-YD--NMTPEDDCVRR-------- 83 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~-~~--~~~~~~~~v~~-------- 83 (509)
.++.||++.|+||.+|.+||| ||.|+.|++||.+. +.|+||.+++...-+ +. ++....+.-+.
T Consensus 41 ~~~veaVkDi~DgA~vlvGGFGlCGIPEnlI~Al~kt----gvK~lt~VSnN~GVd~~GLGlLl~~rQvkr~v~SYVGEN 116 (516)
T KOG3822|consen 41 ADPVEAVKDIPDGATVLVGGFGLCGIPENLIAALLKT----GVKGLTVVSNNAGVDDFGLGLLLAARQVKRMVSSYVGEN 116 (516)
T ss_pred cCHHHHhhcCCCCCEEEEccccccCCcHHHHHHHHHh----CCcccEEEecCCCccccchhhhhhHHHHHHHHHhhhccc
Confidence 689999999999999999998 99999999999887 789999998754332 11 01000000011
Q ss_pred -------------eccccCHHHHHHHHcCC----ceeecCCCChHH------------------------------HHHH
Q psy2323 84 -------------LSFFVSPYTRKYVNTGA----AEYIPIMLNDLP------------------------------MVFD 116 (509)
Q Consensus 84 -------------~s~f~~~~~r~~i~~G~----i~f~P~~ls~~~------------------------------~~l~ 116 (509)
..+-.++.+.+.+++|- ..|+|..|..+. .++.
T Consensus 117 ~e~~rQYLsGELelElTPQGTLAErIRAgGAGvPAFYTPTGYgTlvQEGGaPIkYskdG~v~iaSk~revreFNG~~~v~ 196 (516)
T KOG3822|consen 117 TEFERQYLSGELELELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGAPIKYSKDGKVAIASKPREVREFNGDHFVL 196 (516)
T ss_pred hHHHHHhhcceeEEEecCCchHHHHHhccCCCCCceecCCcceeeeeeCCcceeeCCCCcEEeecCCchhhhcCCceeee
Confidence 12334555666666653 357777664321 1233
Q ss_pred ccCCCCcEEEEEecCCCCCCcEEeccC-cchhHHHHhccCcEEEEecccCCCC-CCCccccCCcccEEeccchhhhhhcc
Q psy2323 117 RGYFSPDVALISVSPPDASGFVSLGTN-VVELLSVIRGSKRVIAQINDRMPRS-LGEALVHVSEIDYKEKLSDLIRYVCQ 194 (509)
Q Consensus 117 ~g~~~iDVAlI~vs~~De~Gn~slg~s-~~~~~~~a~aAk~VIvEVn~~vP~~-~g~~~i~~~~Vd~i~~~~~~~~~~~~ 194 (509)
+..+..|.|+++++.+|..||+.|..+ .+++..|+++|+..++||+++++.+ +.+..||+..+ |+ |...
T Consensus 197 EeaI~~DFAlvKawkAD~~GNvvFr~sArNFN~PMCkAak~TvvEVEEIV~iGa~aP~diHvP~I-Yv---~Rli----- 267 (516)
T KOG3822|consen 197 EEAIRADFALVKAWKADRAGNVVFRKSARNFNVPMCKAAKVTVVEVEEIVEIGAFAPEDIHVPNI-YV---HRLI----- 267 (516)
T ss_pred hhhhhhhhhhhhhhhcCcccceeeehhhccCCcccchhccceEEEEeeeeccCccChhhccccce-ee---eeee-----
Confidence 446788999999999999999999866 5689999999999999999999976 33445665553 11 1110
Q ss_pred eeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcC
Q psy2323 195 VYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLE 274 (509)
Q Consensus 195 ~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~ 274 (509)
.|..|-+. +|. + +...+=|+. .+..+|.+.|++|++|+|. ++.
T Consensus 268 --------------kG~~Y~Kr------iER--l------~i~~e~d~~--------~~~~~pg~~RerI~~RaAL-EF~ 310 (516)
T KOG3822|consen 268 --------------KGQKYEKR------IER--L------TILKEGDGD--------AGKEEPGDARERIIRRAAL-EFE 310 (516)
T ss_pred --------------ccccccch------hhh--c------eecccCCCC--------CCCCCCchHHHHHHHHHhh-hcc
Confidence 01111110 110 0 000000111 3345577899999999999 999
Q ss_pred CCCeeccccCchHHHHHHhhhccCCeeEEeCC----cc------hhHHHHHHhcCcccccccccCCceeeeccCCChhhH
Q psy2323 275 DEATLQIGLGKIPEAILSNIKHQINLGVHTEL----LT------PGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLY 344 (509)
Q Consensus 275 dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~----~~------d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly 344 (509)
||.--||||| ||....+++...-.+-+|||. +. ..-.+|+++|+-+-. +.|| +..|||.+.|
T Consensus 311 DGMYANLGIG-IP~LasN~I~~~~tVhLqSENGilGlGP~P~k~~~DaDLINAGKe~vT---vlpG----as~f~SDdSF 382 (516)
T KOG3822|consen 311 DGMYANLGIG-IPLLASNFISPGMTVHLQSENGILGLGPFPTKDEVDADLINAGKETVT---VLPG----ASFFGSDDSF 382 (516)
T ss_pred ccchhccccC-ceecccccCCCCceEEEeccCceeecCCCCCCCccChhHhhcCCcceE---EccC----ceeeccCccc
Confidence 9999999999 998777777554444566774 10 123789999998764 3443 4568888666
Q ss_pred HHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEE
Q psy2323 345 DFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILA 424 (509)
Q Consensus 345 ~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~ 424 (509)
.+ ||+.|-++++++|+||..||+.+.|+++|+++.|+||.+|++.. ++ .|.|+.
T Consensus 383 AM--------------------IRGgHvdlT~LGAmqvS~~GDLANWMIPGKlVKGMGGAMDLVss----~~--trVvvt 436 (516)
T KOG3822|consen 383 AM--------------------IRGGHVDLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSS----PK--TRVVVT 436 (516)
T ss_pred ce--------------------eccCcceeEeeeeeehhhccchhhhcccchhhccccccchhhhC----CC--ceEEEE
Confidence 54 45556789999999999999999999999999999999999974 34 677999
Q ss_pred eecccCCCCccceeccccCCCccccCCCceEEEEccceEEEcC---CCCHHHHHHHhh
Q psy2323 425 LPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLF---AKSTRQRAHALI 479 (509)
Q Consensus 425 ~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~Lr---G~~l~ErA~~li 479 (509)
|.+.+ |+|.+||...|+ ...|.+++++.|+||.+|||.. |++|+|.+++|.
T Consensus 437 MeH~a-k~~~pKIme~C~---lPLTGK~~v~rIItekAVFdV~~k~gLTLiE~~eglT 490 (516)
T KOG3822|consen 437 MEHCA-KDNTPKIMEKCT---LPLTGKGCVDRIITEKAVFDVDKKKGLTLIELWEGLT 490 (516)
T ss_pred Eeecc-cCCCchhhhhcc---ccccCcchHhhhhhhheeEEeecCCCcEEeeeccCCc
Confidence 99999 999999999999 7889999999999999999984 999999998875
No 10
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=100.00 E-value=2.9e-37 Score=297.65 Aligned_cols=177 Identities=23% Similarity=0.332 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHH-------------HHHHhcCccccccc
Q psy2323 260 IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVI-------------KLFNSGVINNSKKS 326 (509)
Q Consensus 260 ~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~-------------~l~e~G~i~~~~k~ 326 (509)
.++.||+|+|. +|+||+++|+||| ||++++.+|.++++|++|||. +++ .++++|.+ +|+
T Consensus 2 ~~~~Ia~~aA~-~i~dg~~v~lGiG-iP~~va~~l~~~~~l~l~~E~---G~~g~~p~p~~~~~~~~l~~~g~~---~~~ 73 (207)
T TIGR02428 2 TRDQIAARAAQ-ELKDGDYVNLGIG-IPTLVANYLPEGIEVFLQSEN---GILGMGPAPEPGEEDPDLINAGKQ---PVT 73 (207)
T ss_pred hHHHHHHHHHH-hcCCCCEEEEeec-HHHHHHHHHhcCCeEEEEEeC---ceecCccCCCCCCcCHHHHhCCCC---cee
Confidence 37999999999 9999999999999 999999999999999999993 554 78888888 566
Q ss_pred ccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHH
Q psy2323 327 IDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVD 406 (509)
Q Consensus 327 ~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~D 406 (509)
+++|..+ ++.+++|++++.+++ +++|||++|||++||||+|++|+++++|+|||+|
T Consensus 74 ~~~g~~~-------------~~~~~~f~~~~~G~~-----------dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d 129 (207)
T TIGR02428 74 LLPGASY-------------FDSADSFAMIRGGHV-----------DVAVLGALQVSENGDLANWMIPGKLVPGMGGAMD 129 (207)
T ss_pred eccCcEE-------------ecChhheeeEcCCce-----------eEEEechHHhCCCCcccccccCCccccccCchhh
Confidence 7766443 677788888888733 5999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEEEcC--CCCHHHHHHHhh
Q psy2323 407 FMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLF--AKSTRQRAHALI 479 (509)
Q Consensus 407 f~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~Lr--G~~l~ErA~~li 479 (509)
|+++|+++ |||++||+ |+|.||||++++ .++++++++++||||||||+|+ |+.|.|++|++.
T Consensus 130 ~~~~a~~~-------i~~~~~t~-~~g~~~iv~~~~---~~~t~~~~v~~vVTe~gV~~l~~~~l~L~~~~pgv~ 193 (207)
T TIGR02428 130 LVAGAKRV-------IVAMEHTT-KDGESKILKECT---LPLTGAGCVDRIVTELAVFEVTDGGLILRELAPGVT 193 (207)
T ss_pred hhcCCCEE-------EEEEeeEC-CCCceEEcccCC---CccCCCCcccEEECCCEEEEEeCCcEEEEEECCCCC
Confidence 99999666 99999998 888999999997 7789999999999999999998 777777777663
No 11
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4e-36 Score=299.13 Aligned_cols=404 Identities=18% Similarity=0.184 Sum_probs=313.7
Q ss_pred CCHHHHhh--cCCCCCEEEEcCCCCC----hHHHHHHHHHhHhcCCCcceEEEEeecCCC-C-CCCCCC-CCcE-EEecc
Q psy2323 17 ISKEQAVQ--FIKPNSLVFVEGVVGT----PKVLMNAMYDHVKSKNIQGVTVLDVFSLYP-Y-DNMTPE-DDCV-RRLSF 86 (509)
Q Consensus 17 ~SaeEA~~--~I~dGdtI~~gg~~g~----P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~-~-~~~~~~-~~~v-~~~s~ 86 (509)
-|+|||+. .+||||||.|++.... -..+++.+++. ++||||+-++ ++.+ + ++.+.- .|.+ ++.+.
T Consensus 51 ~SleEaI~~sGlkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~m----GfKnLtlA~S-Sl~~~h~pliehIknGVVt~I~sS 125 (513)
T COG3051 51 ASLEEAIRRSGLKDGMTISFHHAFRGGDLVVNMVMDVIAKM----GFKNLTLASS-SLSDCHAPLVEHIKNGVVTRIYSS 125 (513)
T ss_pred HHHHHHHHHhCccCCeEEEeeehhcCCceeHHHHHHHHHHh----Cccceeeccc-hhhhhhHHHHHHHhcCEeeeEeec
Confidence 58899995 4999999999886322 33455555555 8999999754 2332 1 222222 4544 46778
Q ss_pred ccCHHHHHHHHcCCceeecCC-CChHH--HHHHccCCCCcEEEEEecCCCCCCcEE-e-c----cCcchhHHHHhccCcE
Q psy2323 87 FVSPYTRKYVNTGAAEYIPIM-LNDLP--MVFDRGYFSPDVALISVSPPDASGFVS-L-G----TNVVELLSVIRGSKRV 157 (509)
Q Consensus 87 f~~~~~r~~i~~G~i~f~P~~-ls~~~--~~l~~g~~~iDVAlI~vs~~De~Gn~s-l-g----~s~~~~~~~a~aAk~V 157 (509)
.+...+.+.+..|.++- |.. -||.. +++..|.+++||||+.+..+||.||.+ | | .|.+|....|+.||.|
T Consensus 126 GlRg~lg~~IS~Gll~~-PV~i~SHGGRv~~i~sGel~IDvAFlgvP~cDe~GNaNG~~GKa~cGSlGYA~vDA~yAd~V 204 (513)
T COG3051 126 GLRGPLGEEISRGLLAE-PVQIHSHGGRVHLVQSGELHIDVAFLGVPSCDEFGNANGFTGKACCGSLGYAMVDAQYADQV 204 (513)
T ss_pred cccchHHHHHhhhHhhC-CeEEeccCceEEEeecCceeEEEEEecCCChhhhcCcCCCcCccccccccceeechhhcceE
Confidence 88888888888886643 322 23443 356779999999999999999999986 2 3 3456888899999999
Q ss_pred EEEecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCc
Q psy2323 158 IAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGW 237 (509)
Q Consensus 158 IvEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~ 237 (509)
++-.++.+|+..-+.+|...+||+|| ..|. ..
T Consensus 205 V~lTe~lv~yPn~PaSI~Q~qVD~vV----------------------------------------~vd~-vG------- 236 (513)
T COG3051 205 VMLTEELVPYPNNPASIAQDQVDLVV----------------------------------------QVDA-VG------- 236 (513)
T ss_pred EEehhhccCCCCCCcccccccceEEE----------------------------------------EEec-cC-------
Confidence 99999999998778888888999884 2221 00
Q ss_pred cccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhc------CCCCeeccccCchHHHHHHhhhcc---CCee--EEeCC
Q psy2323 238 LLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELL------EDEATLQIGLGKIPEAILSNIKHQ---INLG--VHTEL 306 (509)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i------~dg~~lqlGiG~ip~aV~~~L~~~---~~lg--ihtE~ 306 (509)
||.++... ......++.+..||+++|+ .| +||..+|.|-|+-+.||..+|.++ +|+. +--++
T Consensus 237 ---dp~kIg~g---AtR~t~nPreLlIA~~aa~-VI~~SgYFkdGFs~QTGtGGAsLaVtrfl~ekM~~~nI~AsfaLGG 309 (513)
T COG3051 237 ---DPKKIGAG---ATRMTTNPRELLIARSAAD-VIVNSGYFKDGFSMQTGTGGASLAVTRFLEEKMRRRNIKASFALGG 309 (513)
T ss_pred ---ChhhccCC---ceecCCChHHHHHHHHHhh-hhhcCCcccCceeeecCCCchhHHHHHHHHHHHHhhccceeeeccc
Confidence 23333322 2334567889999999999 55 789999999999999999999884 5554 55689
Q ss_pred cchhHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCC-cEEEeeccccCcH---HHHhccCccEEeeceeee
Q psy2323 307 LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTYSNDP---AIIRQNHRMTAINTCLEI 382 (509)
Q Consensus 307 ~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~-~~~~~~~~~~n~p---~~i~~~~~~vain~a~Ev 382 (509)
++..|++|.|.|.+..- +| +++|+..+. ..+..|| +++.....|.|.. ..+.++ ++.|++|+|+
T Consensus 310 IT~~mVdLhE~gLi~kl---lD----vQsFD~~aa---~Sla~np~h~EIsAn~YAnp~skGa~vdrL--dvviLSALEi 377 (513)
T COG3051 310 ITATMVDLHEEGLIDKL---LD----VQSFDSDAA---QSLARNPNHIEISANQYANPGSKGASVDRL--DVVILSALEI 377 (513)
T ss_pred chHHHHHHHHHHHHHHH---hc----ccccCcHHH---HHHhcCCccEEechhhhcCCCCCCceecee--eEEEEEeeee
Confidence 99999999999999764 34 678888777 6788888 8889988898875 456777 7999999999
Q ss_pred ecCCCccccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccc
Q psy2323 383 DITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEY 461 (509)
Q Consensus 383 Dl~G~vn~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~ 461 (509)
|-..|||+-+ ..|-+-..+||+.|.+.+|++| ||..|..+ +.|+.+|+.+. .+.||...||++|||+
T Consensus 378 Dt~FNVNVmTgSdGvirgAsGGHcDTA~~A~ls-------iI~aPLvR--gRIptvVd~V~---tviTPG~svDvlvTd~ 445 (513)
T COG3051 378 DTQFNVNVMTGSDGVIRGASGGHCDTAAAAALS-------IIVAPLVR--GRIPTVVDNVT---TVITPGSSVDVLVTDH 445 (513)
T ss_pred ccccceEEEecCCceeecccCCccchhhhhcee-------EEeehhhc--Cccceeeccce---eEecCCCceeEEEecc
Confidence 9999999977 6777778899999999999999 99999986 44999999999 8999999999999999
Q ss_pred eEE-EcCCCCHHHHHHHhhccCCCccHHHHHHHHHHHhcCCCCCCCC
Q psy2323 462 GCA-DLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPKMDTT 507 (509)
Q Consensus 462 Gva-~LrG~~l~ErA~~li~iAhp~fr~~L~~~a~~~~~~~~~~~~~ 507 (509)
|+| +.+...|.||-... .+.-.. .|+|.+.|+.++|.|-+...|
T Consensus 446 GIavNP~R~dL~e~l~~a-~v~~~t-IE~l~erA~~ltGkP~pieft 490 (513)
T COG3051 446 GIAVNPARPDLAERLSEA-GVPVVT-IEELQERAELLTGKPQPIEFT 490 (513)
T ss_pred ceeeCCCCHHHHHHHHhC-CCcEEE-HHHHHHHHHHhcCCCCceecc
Confidence 999 66777777765554 244333 689999999999998776543
No 12
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=100.00 E-value=5.8e-35 Score=280.61 Aligned_cols=175 Identities=36% Similarity=0.630 Sum_probs=138.2
Q ss_pred chhhhhhccCCCccCCHHHHhhcCCCCCEEEEcC--CCCChHHHHHHHHHhHhc-C---CCcceEEEEeecCCCC---CC
Q psy2323 3 AKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEG--VVGTPKVLMNAMYDHVKS-K---NIQGVTVLDVFSLYPY---DN 73 (509)
Q Consensus 3 ~~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg--~~g~P~~Ll~AL~~r~~~-~---~~kdLtl~~~~~~g~~---~~ 73 (509)
++++|++| + +|++||+++|++||+|++|+ ++|.|.+|..||++|..+ . ....+++....++... ++
T Consensus 1 ~~~~Y~~K---l--~sa~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~ 75 (198)
T PF02550_consen 1 YQEEYKRK---L--VSAEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPY 75 (198)
T ss_dssp --HHHHHH---B--E-HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCC
T ss_pred ChHHHhhh---c--CCHHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccc
Confidence 57899999 4 89999999999999999999 699999999999988762 1 1223555554433321 23
Q ss_pred CCCC-CCcEEEeccccCHHHHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHh
Q psy2323 74 MTPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIR 152 (509)
Q Consensus 74 ~~~~-~~~v~~~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~ 152 (509)
+.+. ..+++..+||.++..|+++++|+++|+|.|||+++++++++..++|||+++||||||+||||||.++++..++++
T Consensus 76 ~~~~~~~~~~~~s~f~~~~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~~~ie 155 (198)
T PF02550_consen 76 LAPESAFHFRHNSFFVGPNERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTKAAIE 155 (198)
T ss_dssp HSGCCTCCEEEEESS--HHHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHHHHHH
T ss_pred cchhhhhhcccCcccCCHHHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHHHHHh
Confidence 3343 566788999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred ccCcEEEEecccCCCCCC-CccccCCcccEE
Q psy2323 153 GSKRVIAQINDRMPRSLG-EALVHVSEIDYK 182 (509)
Q Consensus 153 aAk~VIvEVn~~vP~~~g-~~~i~~~~Vd~i 182 (509)
.|++||+|||++||+++| +..||+++||+|
T Consensus 156 ~A~~vI~eVN~~~P~~~G~~~~ihis~Vd~I 186 (198)
T PF02550_consen 156 QAKKVIVEVNPNMPRTFGIDTLIHISEVDYI 186 (198)
T ss_dssp HTSEEEEEEETTSTS-EETSTEEEGGG-SEE
T ss_pred cCCeEEEEcCCCCCCCCCCCCccccccCCEE
Confidence 999999999999999999 889999999988
No 13
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=99.92 E-value=1.1e-24 Score=211.20 Aligned_cols=158 Identities=15% Similarity=0.226 Sum_probs=120.6
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC--CCcEEE---eccc
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE--DDCVRR---LSFF 87 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~--~~~v~~---~s~f 87 (509)
|++|++||+++|+|||+|++||| ++.|.+|++||.+| +++|||+++....+....++.. .+.+++ .+|.
T Consensus 4 K~~s~~eAv~~I~DG~ti~~gGf~~~~~P~ali~al~r~----~~~dLtli~~~~g~~~~g~~~L~~~G~Vkr~i~s~~g 79 (219)
T PRK09920 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES----GVRDLTLIANDTAFVDTGIGPLIVNGRVKKVIASHIG 79 (219)
T ss_pred ccCcHHHHHhcCCCCCEEEECcccCcCCHHHHHHHHHhc----CCCceEEEEeCCCCCCcchhhHhhCCCEeEEEecccc
Confidence 56999999999999999999998 68999999999998 7899999985433321122211 466553 3345
Q ss_pred cCHHHHHHHHcCCcee------------------ecCCCChH-----------------HHHHHccCCCCcEEEEEecCC
Q psy2323 88 VSPYTRKYVNTGAAEY------------------IPIMLNDL-----------------PMVFDRGYFSPDVALISVSPP 132 (509)
Q Consensus 88 ~~~~~r~~i~~G~i~f------------------~P~~ls~~-----------------~~~l~~g~~~iDVAlI~vs~~ 132 (509)
.+|.+++++++|+++. +|..+++. .+|+.+..+++||||||++.+
T Consensus 80 ~~p~~~~~~~~g~ie~~~~pqg~l~~~lRA~a~G~Pg~~t~~glGT~v~~gk~~~~~~G~~~l~~~a~~~DvAlI~a~~A 159 (219)
T PRK09920 80 TNPETGRRMISGEMDVELVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRA 159 (219)
T ss_pred CCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceeeccccCccccCCCceeEECCeEEEEEecCCCcEEEEEeccc
Confidence 8899999999999752 11111111 135667789999999999999
Q ss_pred CCCCcEEeccC-cchhHHHHhccCcEEEEecccCCCCCCCccccCCccc
Q psy2323 133 DASGFVSLGTN-VVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEID 180 (509)
Q Consensus 133 De~Gn~slg~s-~~~~~~~a~aAk~VIvEVn~~vP~~~g~~~i~~~~Vd 180 (509)
|++||++|..+ ..+...+|+|||+|||||++++|.. .|++++|.
T Consensus 160 D~~GN~~~~~~~~~~~~~~A~AA~~vIv~ve~iV~~g----~l~P~~v~ 204 (219)
T PRK09920 160 DTLGNLTYQLSARNFNPLIALAADITLVEPDELVETG----ELQPDHIV 204 (219)
T ss_pred CCCCCEEEECccccCCHHHHhhCCeEEEEEEEEecCC----CcCCceEE
Confidence 99999999654 5566679999999999999999963 56666654
No 14
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=99.91 E-value=3.3e-25 Score=211.35 Aligned_cols=180 Identities=18% Similarity=0.264 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcc----------hhHHHHHHhcCccccccccc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLT----------PGVIKLFNSGVINNSKKSID 328 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~----------d~~~~l~e~G~i~~~~k~~~ 328 (509)
..+..||.|+|. +++||..+|+||| +|..|++++.+..++-+|+|... +...+++.+|.-.-.. .
T Consensus 6 ~~~e~ia~r~A~-el~dG~~VnlGIG-lPtlvan~~~~~~~~~~~seng~Lg~g~~p~~~~~d~~linaG~~~vt~---~ 80 (225)
T COG2057 6 TEREMIAKRAAR-ELKDGDYVNLGIG-LPTLVANYAPEGMNVLLQSENGLLGVGPAPLPGEEDADLINAGKQPVTA---L 80 (225)
T ss_pred hhHHHHHHHHHH-hccCCCEEEecCC-chHHhHhhcccccceEEecCceeEEecCCCCCCCCCcchhhCCCceeEe---c
Confidence 458999999999 9999999999999 99999999999888888988521 3356677766654431 1
Q ss_pred CCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHh
Q psy2323 329 RGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFM 408 (509)
Q Consensus 329 ~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~ 408 (509)
+ .+..|-+...|.| |++.|-+++|+|++|||.+||+|+|.+|++++.|+||++|++
T Consensus 81 p----g~~~f~sa~sf~~--------------------irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~ 136 (225)
T COG2057 81 P----GASVFDSADSFAM--------------------IRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLV 136 (225)
T ss_pred C----CceEEchHHHHHH--------------------HhCCceEEEEecceeecccCceeeeeECCccccCCccchhhh
Confidence 1 1223444545544 667777999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEEEcC--C-CCHHHHHHHh
Q psy2323 409 RGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLF--A-KSTRQRAHAL 478 (509)
Q Consensus 409 ~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~Lr--G-~~l~ErA~~l 478 (509)
.||+++ |++|.+|. |.|.+|++++|+ ..-+..++++.||||.||++.. + +.+.|.+++.
T Consensus 137 ~gakkv-------ii~m~H~~-k~g~~ki~~~ct---lplt~~~~v~~iiTdl~V~~~~~~~~~~l~el~pgv 198 (225)
T COG2057 137 TGAKKV-------IVVMEHTK-KSGVGKILKECT---LPLTGNGCVDRVITDLAVFEFDPGGELTLVELAPGV 198 (225)
T ss_pred cCCcEE-------EEEeeeec-ccCCCcccCccc---ccccCCCCceEEEeccEEEEecCCCeEEEEEeCCCC
Confidence 999998 99999999 889999999999 7778899999999999999985 3 5555555444
No 15
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=99.89 E-value=3e-23 Score=201.74 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=118.0
Q ss_pred cCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEe-ecCCCCC--CCCCCCCcEEE--eccc-
Q psy2323 16 LISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDV-FSLYPYD--NMTPEDDCVRR--LSFF- 87 (509)
Q Consensus 16 v~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~-~~~g~~~--~~~~~~~~v~~--~s~f- 87 (509)
+.|++||+++|+|||+|++||| ++.|.+|++||.++ +++|||+++. .+.++.. .+.. .+.+++ .+|.
T Consensus 6 ~~s~~eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~----~~~~Ltlv~~~~g~~~~g~~~L~~-~G~Vkr~i~s~~~ 80 (222)
T TIGR02429 6 IESAAEAVSVIPDGATIMIGGFGTAGQPFELIDALIDT----GAKDLTIVSNNAGNGEIGLAALLK-AGQVRKLICSFPR 80 (222)
T ss_pred eCCHHHHHhhCCCCCEEEECCcCCccCcHHHHHHHHhc----CCCCcEEEecCCCCCCccHHHHHh-CCCEeEEEccccC
Confidence 3699999999999999999998 68999999999996 7899999984 3333321 1111 456543 3443
Q ss_pred --cCHHHHHHHHcCCcee------------------ecCCCChH-----------------HHHHHccCCCCcEEEEEec
Q psy2323 88 --VSPYTRKYVNTGAAEY------------------IPIMLNDL-----------------PMVFDRGYFSPDVALISVS 130 (509)
Q Consensus 88 --~~~~~r~~i~~G~i~f------------------~P~~ls~~-----------------~~~l~~g~~~iDVAlI~vs 130 (509)
..|.+++++++|+++. +|..+++. .+|+.+..+++||||||++
T Consensus 81 ~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t~~glGT~v~~g~~~~~f~G~~~l~~~a~~~DvAlIha~ 160 (222)
T TIGR02429 81 QSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFTPTGYGTLLAEGKETREFDGKGYVLEYPLPADFALIKAH 160 (222)
T ss_pred CCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceeeccccCccccCCcEEEEECCcEEEEEcCCCCcEEEEEec
Confidence 2566999999999752 22222111 1356677899999999999
Q ss_pred CCCCCCcEEeccC-cchhHHHHhccCcEEEEecccCCCCCCCccccCCccc
Q psy2323 131 PPDASGFVSLGTN-VVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEID 180 (509)
Q Consensus 131 ~~De~Gn~slg~s-~~~~~~~a~aAk~VIvEVn~~vP~~~g~~~i~~~~Vd 180 (509)
.+|++||+++..+ ......+|+|||+|||||++++|.. +|++++|.
T Consensus 161 ~AD~~GN~~~~~~~~~~~~~~A~AAk~vIv~vE~IV~~g----~l~P~~v~ 207 (222)
T TIGR02429 161 KADRWGNLTYRKAARNFGPIMAMAAKTTIAQVSQVVELG----ELDPEDVI 207 (222)
T ss_pred ccCCCCcEEEECccccCCHHHHhhcCcEEEEEEEEecCC----CcCCceEE
Confidence 9999999999654 6667779999999999999999963 56666654
No 16
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=99.88 E-value=3.9e-22 Score=189.72 Aligned_cols=158 Identities=21% Similarity=0.257 Sum_probs=118.8
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC--CCcEE--Eecc-c
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE--DDCVR--RLSF-F 87 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~--~~~v~--~~s~-f 87 (509)
|.+|++||++.++|||||++||| +|.|.+|+.||.++ +.||||++++...-+...+... .+.++ ..|| +
T Consensus 4 k~~s~~ea~~~~~dG~ti~~gGFg~~g~P~alI~ali~~----GvkdLt~I~n~~g~~d~glg~li~~~~vkk~i~S~ig 79 (220)
T COG1788 4 KLSSAEEAVANVKDGDTIMIGGFGTCGIPEALIHALIRQ----GVKDLTVISNNAGFPDLGLGKLIGNGQVKKMIASYIG 79 (220)
T ss_pred hhhhHHHHHhhCCCCCEEEEccccccCChHHHHHHHHHc----CCcceEEEecCCCCCcccHHHHhhcCcEEEEEEeccC
Confidence 35899999999999999999999 89999999999998 7899999987543221122221 34444 2344 4
Q ss_pred cCHHHHHHHHcCCce--e---------------------ecCCCChHH------------HHHHccCCCCcEEEEEecCC
Q psy2323 88 VSPYTRKYVNTGAAE--Y---------------------IPIMLNDLP------------MVFDRGYFSPDVALISVSPP 132 (509)
Q Consensus 88 ~~~~~r~~i~~G~i~--f---------------------~P~~ls~~~------------~~l~~g~~~iDVAlI~vs~~ 132 (509)
.++...+...+|+++ + +|..+..++ .|+.+..+++|||||+++.+
T Consensus 80 ~n~~~~r~~~~geleve~~pqgtLaerirAgg~Glp~~~t~tg~Gt~v~~gk~~~~~~G~~yvle~~lraDvAiI~a~ka 159 (220)
T COG1788 80 SNPEFGRQMLAGELEVELVPQGTLAERIRAGGAGLPGFPTRTGVGTLVAEGKVTRPFDGEPYVLEPALRADVALIHAHKA 159 (220)
T ss_pred CCHHHHHHhhcceEEEEECCchHHHHHHHhhhcCCCcceeccccCceeecCcEEEeeCCeEEEEecccCcceEEEEeeec
Confidence 678888999999864 2 233332221 24455678999999999999
Q ss_pred CCCCcEEec-cCcchhHHHHhccCcEEEEecccCCCCCCCccccCCccc
Q psy2323 133 DASGFVSLG-TNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEID 180 (509)
Q Consensus 133 De~Gn~slg-~s~~~~~~~a~aAk~VIvEVn~~vP~~~g~~~i~~~~Vd 180 (509)
|++||+.+. ...++++.+|+|||++||||+++||.. .+++..++
T Consensus 160 D~~GNl~y~~t~~nfn~~~A~AAk~~IvevEeIV~~g----el~P~~v~ 204 (220)
T COG1788 160 DSHGNLTYRGTARNFNPLMAMAAKRTIVEVEEIVPLG----ELDPEEVV 204 (220)
T ss_pred CCcCCEEEEcccccCCHHHHhhcCeEEEEEEeeeccC----ccCcccee
Confidence 999999995 456699999999999999999999964 45544443
No 17
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=99.37 E-value=2.5e-13 Score=132.30 Aligned_cols=147 Identities=24% Similarity=0.317 Sum_probs=101.8
Q ss_pred CCHHHHhh-cCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCC-CCCCCCCCCCcEEE--ecc-cc-
Q psy2323 17 ISKEQAVQ-FIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLY-PYDNMTPEDDCVRR--LSF-FV- 88 (509)
Q Consensus 17 ~SaeEA~~-~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g-~~~~~~~~~~~v~~--~s~-f~- 88 (509)
+|++||++ .|+|||+|++||| +|.|.+++.+|+++. .++++++...+.. ..+.+. ..+.++. .+| ..
T Consensus 2 ~s~~eAva~~I~dG~~v~~GG~~~~~~P~al~~~l~r~~----~~~l~~~~~~~g~~~~~~l~-~~g~v~~~~~~~~~~~ 76 (217)
T PF01144_consen 2 MSLAEAVARLIRDGDTVAVGGFGSSGIPMALVRELARQG----HRDLTLVISEAGILGLDPLI-AAGCVKRVEISFGGEE 76 (217)
T ss_dssp HHHHHHHTCT--TTEEEEE-SBTTBTHHHHHHHHHHHHT----TTSEEEEESTTTEECCHHHH-HTTTEEEEEESCTTBB
T ss_pred cCHHHHHhccCCCCCEEEECCCcccCcHHHHHHHHHhcC----CCCcEEEEeCCccccccccc-cCCCcceEEEeccccc
Confidence 68999998 9999999999997 688999999999994 5888888765433 111111 0344432 223 34
Q ss_pred -CHHHHHHHHcCCcee------------------ec--CCC--ChHH----------------HHHHccCCCCcEEEEEe
Q psy2323 89 -SPYTRKYVNTGAAEY------------------IP--IML--NDLP----------------MVFDRGYFSPDVALISV 129 (509)
Q Consensus 89 -~~~~r~~i~~G~i~f------------------~P--~~l--s~~~----------------~~l~~g~~~iDVAlI~v 129 (509)
.+.+++++.+|+++| +| ..+ +-+. .++.+...++|||++++
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~aga~gip~~g~~~~~g~g~~~~p~~~~~~~~~G~~~l~~~a~~~dva~i~~ 156 (217)
T PF01144_consen 77 ASPRFRRAVEDGEIEFEEWSQGGIIDRLRAGAAGIPFYGNLNPTGIGDYVDPRLVRLPGFGGAEYLAVPAIRPDVAIIHH 156 (217)
T ss_dssp CEHHHHHHHHTTSSEEEEHHHHHHHHHHHHHHSTEETTEEEESTTTTSHGGTT-SEEEEETTEEEEEEESTSEEEEEEEC
T ss_pred cchhhhhhccCCceehhhhhcchHHHHHHHhhccCCCCceeeeeecCccccccceeeeccCCcEEEEecCCccEEEEEEE
Confidence 789999999998764 22 111 0001 12233356889999999
Q ss_pred cCCCCCCcEEeccCcch--hHHHHhccCcEEEEecccCCCC
Q psy2323 130 SPPDASGFVSLGTNVVE--LLSVIRGSKRVIAQINDRMPRS 168 (509)
Q Consensus 130 s~~De~Gn~slg~s~~~--~~~~a~aAk~VIvEVn~~vP~~ 168 (509)
+++|+.||+++..+..+ .+.+++++++||++|++.++..
T Consensus 157 ~~ad~~gnv~~~~~~~~~~~~~~a~a~~~tiv~ve~iv~~~ 197 (217)
T PF01144_consen 157 QKADFVGNVDFEGSPGHFDDPAIAMAAKITIVTVEEIVEEG 197 (217)
T ss_dssp EEEETTSSEESSGSSHTTHSHHHHHCEEEEEEEEEEEECTT
T ss_pred cccCCcCeECEeCCCCccccccccccceEEEEEEEEEeccC
Confidence 99999999999876543 3666778999999999998643
No 18
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=96.39 E-value=0.0015 Score=63.70 Aligned_cols=130 Identities=22% Similarity=0.335 Sum_probs=83.4
Q ss_pred HHHHHHHHhhcCCCCeeccc----cCchHHHHHHhhhcc--CCeeE-EeCCcchhHHHHHHhcCcccccccccCCceeee
Q psy2323 263 AIANHICDELLEDEATLQIG----LGKIPEAILSNIKHQ--INLGV-HTELLTPGVIKLFNSGVINNSKKSIDRGQITAT 335 (509)
Q Consensus 263 ~Ia~~va~~~i~dg~~lqlG----iG~ip~aV~~~L~~~--~~lgi-htE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~ 335 (509)
-+++.++. +|+||+++.+| .| +|.++...|.++ ++|.+ .++.-.-++-.|..+|.+... ..+
T Consensus 3 s~~eAva~-~I~dG~~v~~GG~~~~~-~P~al~~~l~r~~~~~l~~~~~~~g~~~~~~l~~~g~v~~~---------~~~ 71 (217)
T PF01144_consen 3 SLAEAVAR-LIRDGDTVAVGGFGSSG-IPMALVRELARQGHRDLTLVISEAGILGLDPLIAAGCVKRV---------EIS 71 (217)
T ss_dssp HHHHHHTC-T--TTEEEEE-SBTTBT-HHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEE---------EES
T ss_pred CHHHHHhc-cCCCCCEEEECCCcccC-cHHHHHHHHHhcCCCCcEEEEeCCccccccccccCCCcceE---------EEe
Confidence 46677888 99999999999 88 998888887653 67664 444422245567788887664 233
Q ss_pred ccCCC--h-hhHHHhhcCC-cEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCC----Cc--cccccccHH
Q psy2323 336 LLLGD--K-PLYDFVHNNE-LVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLG----TR--IYSGFGGQV 405 (509)
Q Consensus 336 ~~~G~--~-~ly~~i~~n~-~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g----~r--~~sG~GG~~ 405 (509)
+ .|. . .+-+.+.++. .++.++.. .++ +.-+.+++++|.+|+.|.+.+| .+ .+.|.+|..
T Consensus 72 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~-----~~~~aga~gip~~g~~~~~g~g~~~~p~~~~~~~~~G~~ 140 (217)
T PF01144_consen 72 F-GGEEASPRFRRAVEDGEIEFEEWSQG-----GII-----DRLRAGAAGIPFYGNLNPTGIGDYVDPRLVRLPGFGGAE 140 (217)
T ss_dssp C-TTBBCEHHHHHHHHTTSSEEEEHHHH-----HHH-----HHHHHHHSTEETTEEEESTTTTSHGGTT-SEEEEETTEE
T ss_pred c-cccccchhhhhhccCCceehhhhhcc-----hHH-----HHHHHhhccCCCCceeeeeecCccccccceeeeccCCcE
Confidence 4 343 2 2323332232 33333432 121 3457899999999999999988 32 468899999
Q ss_pred HHhcccccC
Q psy2323 406 DFMRGALTG 414 (509)
Q Consensus 406 Df~~gA~~s 414 (509)
++...|...
T Consensus 141 ~l~~~a~~~ 149 (217)
T PF01144_consen 141 YLAVPAIRP 149 (217)
T ss_dssp EEEEESTSE
T ss_pred EEEecCCcc
Confidence 999988764
No 19
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=96.31 E-value=0.051 Score=58.98 Aligned_cols=166 Identities=10% Similarity=0.131 Sum_probs=114.1
Q ss_pred HHHHHHHHHhhcCCCCeecccc--CchHHHHHHhhhc-----cCCeeE-EeCCcchhHHHHHHhcCcccccccccCCcee
Q psy2323 262 SAIANHICDELLEDEATLQIGL--GKIPEAILSNIKH-----QINLGV-HTELLTPGVIKLFNSGVINNSKKSIDRGQIT 333 (509)
Q Consensus 262 ~~Ia~~va~~~i~dg~~lqlGi--G~ip~aV~~~L~~-----~~~lgi-htE~~~d~~~~l~e~G~i~~~~k~~~~g~~~ 333 (509)
+.|...++. .|++|+++.+.- -..|+++...|.+ -+||.+ .+-.-.....+|+++|...-. .
T Consensus 28 ~~~~~~l~~-~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl---------~ 97 (543)
T TIGR01110 28 QNGVELLEA-VIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEKGIARKL---------D 97 (543)
T ss_pred HHHHHHHHH-hCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhcCceeeE---------E
Confidence 556677888 999999999873 3489999887764 267763 443444567899999998652 3
Q ss_pred eeccCC-ChhhHHHhhcCCcEEEeeccc--cCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcc
Q psy2323 334 ATLLLG-DKPLYDFVHNNELVQMKRGTY--SNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRG 410 (509)
Q Consensus 334 ~~~~~G-~~~ly~~i~~n~~~~~~~~~~--~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~g 410 (509)
++|.-| +.++-+.+++. .+++-|.-+ ..-|..+..+.-++++..+-..|..||++ +|.. .--...+++.
T Consensus 98 fs~~g~~~~R~~~av~~G-~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s---lG~s----~~~~~aaaeA 169 (543)
T TIGR01110 98 FSFAGPQSLRIAQLLEDG-KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY---TGPN----TEDTPAIVEA 169 (543)
T ss_pred EeecCcchHHHHHHHHcC-CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEE---ecCc----ccchHHHHHh
Confidence 444434 33555555544 688888887 66777666777799999999999999993 3322 1223466777
Q ss_pred cccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEE-cc
Q psy2323 411 ALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVV-TE 460 (509)
Q Consensus 411 A~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vV-TE 460 (509)
|+.+ + |+.|. + +-+||+..+ .+.++...||+|| ++
T Consensus 170 Ak~~-a--giVIV----E-----VNeIVd~~P---rV~IP~s~VD~VVEa~ 205 (543)
T TIGR01110 170 TAFR-D--GIVIA----Q-----VNELVDKLP---RVDIPASWVDFVIESP 205 (543)
T ss_pred hhhc-C--CEEEE----E-----ECccCCCCC---cEEcChhheEEEEEcC
Confidence 7754 2 33343 1 356777766 6788999999997 44
No 20
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=96.21 E-value=0.026 Score=56.47 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
+..++||+.+|. +|+||++|-++.|+....++..|.++++|.|.|-.+.= ...|.+.-.+ .-+.+
T Consensus 76 ~~K~~IA~~Aa~-~I~~g~tIflD~GtT~~~la~~L~~~~~ltVvTNsl~i-a~~l~~~~~~-------------~vill 140 (252)
T PRK10906 76 EEKERIARKVAS-QIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNV-ANTLMAKEDF-------------RIILA 140 (252)
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEcCcHHHHHHHHHhcCCCCcEEEECcHHH-HHHHhhCCCC-------------EEEEE
Confidence 567999999999 99999999999999999999999887899999977532 2233322111 11223
Q ss_pred CChhhHHHhhcCCcEEEeeccccC--cHHHHhccCccEEeeceeeeecCCCccccCCC-CccccccccHHHHhcccccCC
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSN--DPAIIRQNHRMTAINTCLEIDITGQVVSDSLG-TRIYSGFGGQVDFMRGALTGL 415 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n--~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g-~r~~sG~GG~~Df~~gA~~s~ 415 (509)
|-.- +.+ ...++- ....+++.+-+.||.|+--+|..+-+-..... ... .--+...|.++
T Consensus 141 GG~~-----~~~------~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~------k~~~~~~a~~~- 202 (252)
T PRK10906 141 GGEL-----RSR------DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRT------KRAIIENSRHV- 202 (252)
T ss_pred CCEE-----ecC------CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHH------HHHHHHhcCcE-
Confidence 3220 000 000000 01346666678999999999976544333321 110 11244445444
Q ss_pred CCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccce
Q psy2323 416 DGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYG 462 (509)
Q Consensus 416 ~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~G 462 (509)
|+...|+ |=|.+.+. ...+-.++|++||+..
T Consensus 203 ------illaD~s--Kf~~~~~~--------~~~~l~~id~iITD~~ 233 (252)
T PRK10906 203 ------MLVVDHS--KFGRNAMV--------NMGSISMVDAVYTDQL 233 (252)
T ss_pred ------EEEEccc--hhCCccee--------EecCHHHCCEEEECCC
Confidence 7776664 32322222 2334578899999864
No 21
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=95.91 E-value=0.024 Score=61.15 Aligned_cols=154 Identities=20% Similarity=0.201 Sum_probs=95.9
Q ss_pred hcCCCCeecc------ccCchHHHHHHhhhcc--CCeeEEeCCcc---hhHHHHHHhcCcccccccccCCceeeeccCCC
Q psy2323 272 LLEDEATLQI------GLGKIPEAILSNIKHQ--INLGVHTELLT---PGVIKLFNSGVINNSKKSIDRGQITATLLLGD 340 (509)
Q Consensus 272 ~i~dg~~lql------GiG~ip~aV~~~L~~~--~~lgihtE~~~---d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~ 340 (509)
-++||+||.+ |=- +=|.|+..+.+. |||.+.+--+. +.+++.+|+|+|++...+-.+|.
T Consensus 39 gl~dgmtisfhhh~r~gd~-v~n~v~~~~~~~g~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~--------- 108 (492)
T TIGR01584 39 GLKDGMTISFHHHFREGDY-VVNMVMRIIADMGFKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGT--------- 108 (492)
T ss_pred CCcCCcEEEeeccccCccH-HHHHHHHHHHHcCcCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCch---------
Confidence 6899999986 444 677888888764 99998766554 67899999999999753333333
Q ss_pred hhhHHHhh----cCCcEEEeeccccCcHHHH--hccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccC
Q psy2323 341 KPLYDFVH----NNELVQMKRGTYSNDPAII--RQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTG 414 (509)
Q Consensus 341 ~~ly~~i~----~n~~~~~~~~~~~n~p~~i--~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s 414 (509)
+=+++. .+| +.|+.=+ .-+..| ..++-++|+..+-..|.+||+|- ..|.......|-....++.|++
T Consensus 109 --~~~~is~g~l~~p-~~~~shg--gr~r~i~~g~l~iDVAfI~Vsp~D~~Gn~sg-~~G~s~~gslgya~~dA~~A~k- 181 (492)
T TIGR01584 109 --LGDEISKGILKKP-VIIRSHG--GRARAIETGELHIDVAFLGVPCCDEMGNANG-MTGKSPCGSLGYAIVDAQYADK- 181 (492)
T ss_pred --HHHHHhcCCCCCC-eEEecCC--cHHHHHhcCCCCCCEEEEeCCCcccCCCCcc-cCCCcccCccchhHHHHHhCCE-
Confidence 223332 233 2233211 234555 33566899999999999999872 1121111112444455666655
Q ss_pred CCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEc
Q psy2323 415 LDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVT 459 (509)
Q Consensus 415 ~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVT 459 (509)
||+.. -.+||+.- | ....+..+||+||-
T Consensus 182 -------VIaev--------n~~vP~p~-g-~~~Ih~s~VD~VVE 209 (492)
T TIGR01584 182 -------VVAIT--------DSLVPYPN-T-PASIKQTQVDYVVK 209 (492)
T ss_pred -------EEEEE--------CCCCCCCC-C-CCccChhheEEEEE
Confidence 55432 34455532 2 46778899999975
No 22
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=95.66 E-value=0.023 Score=52.88 Aligned_cols=126 Identities=14% Similarity=0.147 Sum_probs=73.7
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVN 97 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~ 97 (509)
=++.|+++|+|||+|++.++. ....+.+.|.++ +++|++++.. .-...+.. ...++. +.+++.++..
T Consensus 9 IA~~A~~~I~~~~~Ifld~Gt-T~~~la~~L~~~------~~ltVvTnsl-~ia~~l~~-~~~~~v--i~~GG~~~~~-- 75 (161)
T PF00455_consen 9 IARKAASLIEDGDTIFLDSGT-TTLELAKYLPDK------KNLTVVTNSL-PIANELSE-NPNIEV--ILLGGEVNPK-- 75 (161)
T ss_pred HHHHHHHhCCCCCEEEEECch-HHHHHHHHhhcC------CceEEEECCH-HHHHHHHh-cCceEE--EEeCCEEEcC--
Confidence 467899999999999998764 356666666544 4899998632 11111110 111111 1112111100
Q ss_pred cCCceeecCCCC-hHHHHHHccCCCCcEEEEEecCCCCC-CcEEecc-CcchhHHHHhccCcEEEEeccc
Q psy2323 98 TGAAEYIPIMLN-DLPMVFDRGYFSPDVALISVSPPDAS-GFVSLGT-NVVELLSVIRGSKRVIAQINDR 164 (509)
Q Consensus 98 ~G~i~f~P~~ls-~~~~~l~~g~~~iDVAlI~vs~~De~-Gn~slg~-s~~~~~~~a~aAk~VIvEVn~~ 164 (509)
.. ..++ ...+.|+ .+++|+||+.++-.|++ |-..... +...-..++++|+.+|+-++..
T Consensus 76 --~~----~~~G~~a~~~l~--~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~s 137 (161)
T PF00455_consen 76 --SL----SFVGPIALEALR--QFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSS 137 (161)
T ss_pred --CC----cEECchHHHHHH--hhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChh
Confidence 00 0011 1123443 46899999999999985 5443433 3556788999999999888763
No 23
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.099 Score=52.35 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCc-----ccccccccCCce
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVI-----NNSKKSIDRGQI 332 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i-----~~~~k~~~~g~~ 332 (509)
.+..++||+.+|. +|+||+++-+..|+...+++..|.+.++|.+-|-.+.- ...|.+...+ +|..+.
T Consensus 75 ~~eK~~IA~~Aa~-lI~~g~~ifld~GTT~~~la~~L~~~~~ltviTNsl~i-a~~l~~~~~~~vi~~GG~~~~------ 146 (253)
T COG1349 75 TEEKRAIAKAAAT-LIEDGDTIFLDAGTTTLALARALPDDNNLTVITNSLNI-AAALLEKPNIEVILLGGTVRK------ 146 (253)
T ss_pred HHHHHHHHHHHHh-hCCCCCEEEECCCcHHHHHHHHhCcCCCeEEEeCCHHH-HHHHHhCCCCeEEEeCcEEEc------
Confidence 3568999999999 99999999999999999999999988779988877643 3334333211 111100
Q ss_pred eeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccc
Q psy2323 333 TATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGAL 412 (509)
Q Consensus 333 ~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~ 412 (509)
-+....|+. - ...+++..-+.+|.|+--+|..+-+......--. =.-.+...|+
T Consensus 147 ~~~~~~G~~-a--------------------~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~-----~k~~~~~~a~ 200 (253)
T COG1349 147 KSGSFVGPL-A--------------------EEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAE-----VKRAMIEAAR 200 (253)
T ss_pred CCCeEEcHH-H--------------------HHHHHhCcccEEEEeccccCCCCCcCcCCHHHHH-----HHHHHHHhhC
Confidence 011112221 1 1345566668999999999976555433321110 0112444444
Q ss_pred cCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEE
Q psy2323 413 TGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCA 464 (509)
Q Consensus 413 ~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva 464 (509)
.. |+..-|+ |=|...+.. ..+-.+++.+||+++.-
T Consensus 201 ~~-------~ll~D~s--Kf~~~~~~~--------~~~l~~i~~iiTD~~~~ 235 (253)
T COG1349 201 EV-------ILLADSS--KFGRVAPAR--------VAPLSEIDTIITDKGLP 235 (253)
T ss_pred cE-------EEEEcCC--ccCCceeEE--------eeCHHHCcEEEeCCCCC
Confidence 43 5555443 444333332 23457889999998653
No 24
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=95.18 E-value=0.13 Score=50.11 Aligned_cols=113 Identities=11% Similarity=0.067 Sum_probs=68.0
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.-++.|+++|++||+|++++++ +...++++|.++... ..+++|++++.. . .....
T Consensus 4 ~IA~~A~~~I~~g~~I~ldsGS-T~~~l~~~L~~~~~~-~~~~itvVTnS~-~----------------------~a~~l 58 (213)
T cd01398 4 AAARAAVDYVEDGMVIGLGTGS-TVAYFIEALGERVRE-EGLNIVGVPTSF-Q----------------------TEELA 58 (213)
T ss_pred HHHHHHHHhCCCCCEEEECchH-HHHHHHHHHHHhhhc-cCCCEEEEeCcH-H----------------------HHHHH
Confidence 4577899999999999999774 356788888766321 134788876421 0 00000
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccC-cchhHHH-HhccCcEEEEeccc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTN-VVELLSV-IRGSKRVIAQINDR 164 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s-~~~~~~~-a~aAk~VIvEVn~~ 164 (509)
.+..++.+... ..+++|+||+.+...|.++++..+.. +..-..+ +.+|+++|+-+++.
T Consensus 59 ~~~~i~vi~lg----------~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~s 118 (213)
T cd01398 59 RELGIPLTDLD----------EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADES 118 (213)
T ss_pred HhCCCeEEeCC----------CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecc
Confidence 00011111110 35679999999999998876544433 2233333 45788777777653
No 25
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=94.77 E-value=0.11 Score=56.82 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=83.6
Q ss_pred HHHHHhhcCCCCeecccc---CchHHHHHHhhhcc----------CCeeEEeCCcc-hh-HHHHHHhcCcccccccccCC
Q psy2323 266 NHICDELLEDEATLQIGL---GKIPEAILSNIKHQ----------INLGVHTELLT-PG-VIKLFNSGVINNSKKSIDRG 330 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlGi---G~ip~aV~~~L~~~----------~~lgihtE~~~-d~-~~~l~e~G~i~~~~k~~~~g 330 (509)
+-++. +|+||++|=+|- -+.|.++...|.++ ++|.+.+..-. +. ...+..+|.+..
T Consensus 6 eEAv~-lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~-------- 76 (485)
T TIGR03458 6 DEAAA-LIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIAR-------- 76 (485)
T ss_pred HHHHH-hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEE--------
Confidence 45667 999999998883 24899999999653 26666552221 11 122333444432
Q ss_pred ceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhcc---CccEEeeceeeeecCCCccccCCCCccccccccHHHH
Q psy2323 331 QITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQN---HRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDF 407 (509)
Q Consensus 331 ~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~---~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df 407 (509)
.. +.+++..+-+.+.++ .+++.|..+..-|..++.. +-++++..+-..|.+||++-.. ...-..++
T Consensus 77 --~i-s~~~sp~~Rkai~~G-~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~-------s~~~~~~a 145 (485)
T TIGR03458 77 --RL-PYQSDPTLRKKINAG-EVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTS-------SVGNNPTF 145 (485)
T ss_pred --Ee-cccCCHHHHHHHHcC-CCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEec-------ccchHHHH
Confidence 11 223344455555555 6789999999999988632 4689999999999999986431 22356677
Q ss_pred hcccccC
Q psy2323 408 MRGALTG 414 (509)
Q Consensus 408 ~~gA~~s 414 (509)
++.|+++
T Consensus 146 a~aAk~V 152 (485)
T TIGR03458 146 LELADKV 152 (485)
T ss_pred HHhCCEE
Confidence 7777664
No 26
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=94.60 E-value=0.072 Score=53.24 Aligned_cols=126 Identities=14% Similarity=0.205 Sum_probs=71.2
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVN 97 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~ 97 (509)
=++.|+++|+|||+|++.++. ....|.+.|.+ .++||++++.. .....+.. ...++. +..|+.++..
T Consensus 82 IA~~Aa~lI~~g~tIflD~Gt-T~~~la~~L~~------~~~ltvvTnsl-~i~~~l~~-~~~~~v--illGG~~~~~-- 148 (252)
T PRK10681 82 AAQLAATLVEPNQTLFFDCGT-TTPWIIEAIDN------ELPFTAVCYSL-NTFLALQE-KPHCRA--ILCGGEFHAS-- 148 (252)
T ss_pred HHHHHHhhcCCCCEEEEECCc-cHHHHHHhcCC------CCCeEEEECCH-HHHHHHhh-CCCCEE--EEECcEEecC--
Confidence 356788999999999998764 34556666532 24799998632 11101110 111111 1122211100
Q ss_pred cCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCC-CcEEecc-CcchhHHHHhccCcEEEEecc
Q psy2323 98 TGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDAS-GFVSLGT-NVVELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 98 ~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~-Gn~slg~-s~~~~~~~a~aAk~VIvEVn~ 163 (509)
...++.. ...+.|. .+.+|.||+.++-.|.+ |...... ++..-..+++.|+++|+-++.
T Consensus 149 --~~~~~G~---~~~~~l~--~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~ 209 (252)
T PRK10681 149 --NAIFKPL---DFQQTLD--NICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDH 209 (252)
T ss_pred --cceeeCH---HHHHHHH--hhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcc
Confidence 0001000 1124453 46899999999999865 5444433 355678899999999887765
No 27
>PLN02384 ribose-5-phosphate isomerase
Probab=94.55 E-value=0.24 Score=49.71 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=73.0
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.-+.+|+++|+|||+|++|.++ +...++++|+++.+++.++|++.+. .+...+...
T Consensus 38 ~aA~~A~~~V~~gmvVGLGTGS-Tv~~~I~~La~r~~~~~l~~I~~Vp-----------------------TS~~T~~~a 93 (264)
T PLN02384 38 IAAYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLKNIIGIP-----------------------TSKKTHEQA 93 (264)
T ss_pred HHHHHHHHhccCCCEEEecchH-HHHHHHHHHHHhhhhccccceEEEc-----------------------CcHHHHHHH
Confidence 5667788999999999998664 3556889999986533344444431 122233333
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
.+-.+...+. . ...++|+||=-+-..|.+.|+.=|.... ...-++.+|++.|+-+++
T Consensus 94 ~~~GIpl~~l---------~-~v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~De 152 (264)
T PLN02384 94 VSLGIPLSDL---------D-SHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDE 152 (264)
T ss_pred HHcCCcEecc---------c-cCCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeC
Confidence 3222222221 1 1235899999999999999988775533 467788899877766665
No 28
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=94.49 E-value=0.059 Score=55.76 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=95.4
Q ss_pred hcCCCCeecc-----ccCchHHHHHHhhhc--cCCeeEEeCCcchh---HHHHHHhcCcccccccccCCceeeeccCCCh
Q psy2323 272 LLEDEATLQI-----GLGKIPEAILSNIKH--QINLGVHTELLTPG---VIKLFNSGVINNSKKSIDRGQITATLLLGDK 341 (509)
Q Consensus 272 ~i~dg~~lql-----GiG~ip~aV~~~L~~--~~~lgihtE~~~d~---~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~ 341 (509)
-++||.|+.+ |=--+=|.|+..+++ .|||.+-+--++|. +++-++.|++++.+.+=.||.. |.
T Consensus 61 GlkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~mGfKnLtlA~SSl~~~h~pliehIknGVVt~I~sSGlRg~l------g~- 133 (513)
T COG3051 61 GLKDGMTISFHHAFRGGDLVVNMVMDVIAKMGFKNLTLASSSLSDCHAPLVEHIKNGVVTRIYSSGLRGPL------GE- 133 (513)
T ss_pred CccCCeEEEeeehhcCCceeHHHHHHHHHHhCccceeeccchhhhhhHHHHHHHhcCEeeeEeeccccchH------HH-
Confidence 3789999987 333467889998887 49999988888865 4566678999997533333321 11
Q ss_pred hhHHHhhcCC-cEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhc-ccccCCCCCC
Q psy2323 342 PLYDFVHNNE-LVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMR-GALTGLDGKG 419 (509)
Q Consensus 342 ~ly~~i~~n~-~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~-gA~~s~~~~g 419 (509)
..-+=+-.|| ++.-+ ++-++--. -..++-++|++++=-+|.+||+|--+ |+ +- -|+.-++. -|...
T Consensus 134 ~IS~Gll~~PV~i~SH-GGRv~~i~-sGel~IDvAFlgvP~cDe~GNaNG~~--GK--a~-cGSlGYA~vDA~yA----- 201 (513)
T COG3051 134 EISRGLLAEPVQIHSH-GGRVHLVQ-SGELHIDVAFLGVPSCDEFGNANGFT--GK--AC-CGSLGYAMVDAQYA----- 201 (513)
T ss_pred HHhhhHhhCCeEEecc-CceEEEee-cCceeEEEEEecCCChhhhcCcCCCc--Cc--cc-cccccceeechhhc-----
Confidence 1111222344 22111 11111100 12356699999999999999998433 22 11 22222222 22222
Q ss_pred cEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEEEc
Q psy2323 420 KAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADL 466 (509)
Q Consensus 420 ~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~L 466 (509)
+-+++++ -.+||.- ..+.+....+||+||+=-.|-|.
T Consensus 202 d~VV~lT--------e~lv~yP--n~PaSI~Q~qVD~vV~vd~vGdp 238 (513)
T COG3051 202 DQVVMLT--------EELVPYP--NNPASIAQDQVDLVVQVDAVGDP 238 (513)
T ss_pred ceEEEeh--------hhccCCC--CCCcccccccceEEEEEeccCCh
Confidence 2255552 2345542 23577888999999886666554
No 29
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=94.48 E-value=0.28 Score=48.09 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=67.8
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVN 97 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~ 97 (509)
=++.|+++|++|++|+++.++ +-..+++.|.++..++++ +++++++.. ..+....
T Consensus 5 IA~~A~~~I~~g~~I~ldsGS-T~~~~~~~L~~~~~~~~l-~itvVt~S~-----------------------~~a~~l~ 59 (218)
T TIGR00021 5 AAEAAAEYVEDGMVVGLGTGS-TVAYFIEALGERVKQEGL-DIVGVPTSK-----------------------QTAELAR 59 (218)
T ss_pred HHHHHHHhCCCCCEEEECCcH-HHHHHHHHHHHhhhccCC-CEEEEeCCH-----------------------HHHHHHH
Confidence 467789999999999998774 346678888776432233 577664311 1111111
Q ss_pred cCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcch--hHHHHhccCcEEEEecc
Q psy2323 98 TGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVE--LLSVIRGSKRVIAQIND 163 (509)
Q Consensus 98 ~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~--~~~~a~aAk~VIvEVn~ 163 (509)
+..+..+ .+. ...++|+||.-+...|.++|+..|..... ...++.+|+++|+-+++
T Consensus 60 ~~gi~v~---------~l~-~~~~iDiafdGaD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~ 117 (218)
T TIGR00021 60 ELGIPLS---------SLD-EVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADE 117 (218)
T ss_pred HCCCCEE---------cHh-HCCccCEEEECCCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEc
Confidence 1111111 121 12368999999999999999966544332 34455588877776665
No 30
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=94.28 E-value=0.072 Score=56.25 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=81.9
Q ss_pred hcCCCCeecc------ccCchHHHHHHhhhcc--CCeeEEeCCcc---hhHHHHHHhcCcccccccccCCceeeeccCCC
Q psy2323 272 LLEDEATLQI------GLGKIPEAILSNIKHQ--INLGVHTELLT---PGVIKLFNSGVINNSKKSIDRGQITATLLLGD 340 (509)
Q Consensus 272 ~i~dg~~lql------GiG~ip~aV~~~L~~~--~~lgihtE~~~---d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~ 340 (509)
-++||+||.+ |=- +-|.|+..+.+. |||.+..--+. +.+++.+|+|+|++...+-.+
T Consensus 16 glkDGMTISFHHH~RnGD~-V~nmVm~~i~~mGiKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~r----------- 83 (466)
T PF04223_consen 16 GLKDGMTISFHHHLRNGDY-VLNMVMDEIAEMGIKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMR----------- 83 (466)
T ss_dssp T--TT-EEEE--TTGGGB--HHHHHHHHHHHTT--SEEEEES---GGGGGHHHHHHTTSEEEEEESEEH-----------
T ss_pred CCcCCcEEEeehhccCccH-HHHHHHHHHHHcCCCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcC-----------
Confidence 6899999886 555 778899988874 99998876555 568999999999986422111
Q ss_pred hhhHHHhhcC---CcEEEeeccccCcHHHH--hccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCC
Q psy2323 341 KPLYDFVHNN---ELVQMKRGTYSNDPAII--RQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGL 415 (509)
Q Consensus 341 ~~ly~~i~~n---~~~~~~~~~~~n~p~~i--~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~ 415 (509)
-.+=+++.+. .-+.|+.=+ .-+..| ..++-++||.+|=-+|.+||+|-.. |..-..-.|=..==++-|.+
T Consensus 84 G~lg~aiS~G~l~~Pvi~rSHG--GR~raIe~Ge~~IDVAFi~AP~~D~~GN~nG~~-G~saCGsLGYa~~DA~yA~~-- 158 (466)
T PF04223_consen 84 GPLGEAISEGKLKKPVIIRSHG--GRARAIESGELHIDVAFIAAPSCDEYGNANGVG-GKSACGSLGYAMVDAQYADK-- 158 (466)
T ss_dssp HHHHHHHHCT--SS-EEE-BHH--HHHHHHHCTSS--SEEEEEESEEETTS-EESSS-SSS--S--CCHHHHHHH-SE--
T ss_pred chHHHHHhCCCCCCCEEEeCCC--CchhheecCCcceEEEEEcCCccccccCcCCCc-CCccccccccchhhHHhcCc--
Confidence 2344455331 123333311 112222 3456689999999999999987532 32222222222222333444
Q ss_pred CCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEc
Q psy2323 416 DGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVT 459 (509)
Q Consensus 416 ~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVT 459 (509)
+++++ -++||.-- .+++.+..+|||||-
T Consensus 159 ------VV~iT--------D~Lv~yP~--~p~sI~q~~VDyVV~ 186 (466)
T PF04223_consen 159 ------VVAIT--------DNLVPYPN--TPASIPQTQVDYVVV 186 (466)
T ss_dssp ------EEEEE--------SSEE-SS---SS-SB-GGG-SEEEE
T ss_pred ------EEEEe--------cCCCCCCC--CCCCcccceeeEEEE
Confidence 45542 34666632 268899999999964
No 31
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=94.15 E-value=0.14 Score=51.18 Aligned_cols=122 Identities=12% Similarity=0.203 Sum_probs=71.3
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVN 97 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~ 97 (509)
=+..|+++|+|||+|++.++. +...+.+.|.+ .++||++++.. .-...+.. ...+.. +..|+.++
T Consensus 81 IA~~Aa~~I~~g~tIflD~Gt-T~~~la~~L~~------~~~ltVvTNsl-~ia~~l~~-~~~~~v--illGG~~~---- 145 (252)
T PRK10906 81 IARKVASQIPNGATLFIDIGT-TPEAVAHALLN------HSNLRIVTNNL-NVANTLMA-KEDFRI--ILAGGELR---- 145 (252)
T ss_pred HHHHHHhhCCCCCEEEEcCcH-HHHHHHHHhcC------CCCcEEEECcH-HHHHHHhh-CCCCEE--EEECCEEe----
Confidence 356788999999999998774 34566666633 25799998632 11111110 011111 11222111
Q ss_pred cCCceeecCC---CCh-HHHHHHccCCCCcEEEEEecCCCCC-CcEEecc-CcchhHHHHhccCcEEEEecc
Q psy2323 98 TGAAEYIPIM---LND-LPMVFDRGYFSPDVALISVSPPDAS-GFVSLGT-NVVELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 98 ~G~i~f~P~~---ls~-~~~~l~~g~~~iDVAlI~vs~~De~-Gn~slg~-s~~~~~~~a~aAk~VIvEVn~ 163 (509)
|.. ++. ..+.|+ .+.+|.||+-++-.|.+ |-..... ++..-..+++.|+.+|+-++.
T Consensus 146 -------~~~~~~~G~~a~~~l~--~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~ 208 (252)
T PRK10906 146 -------SRDGGIIGEATLDFIS--QFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDH 208 (252)
T ss_pred -------cCCCccCCHHHHHHHH--hccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEcc
Confidence 111 111 224454 47899999999999965 5333332 244578899999999988876
No 32
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=94.06 E-value=0.51 Score=46.32 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=86.6
Q ss_pred HHHHhhcCCCCeeccc---cCchHHHHHHhhhcc--CCeeEEe-CC--cchhHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 267 HICDELLEDEATLQIG---LGKIPEAILSNIKHQ--INLGVHT-EL--LTPGVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 267 ~va~~~i~dg~~lqlG---iG~ip~aV~~~L~~~--~~lgiht-E~--~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
-++. +|+||++|-+| ..++|.++...|.++ +||.+.+ -. -.-++=.|+++|.+... .+++ +
T Consensus 10 eAv~-~I~DG~ti~~gGf~~~~~P~ali~al~r~~~~dLtli~~~~g~~~~g~~~L~~~G~Vkr~---------i~s~-~ 78 (219)
T PRK09920 10 DATG-FFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVKKV---------IASH-I 78 (219)
T ss_pred HHHh-cCCCCCEEEECcccCcCCHHHHHHHHHhcCCCceEEEEeCCCCCCcchhhHhhCCCEeEE---------Eecc-c
Confidence 3556 89999999753 223899999998653 8999764 11 11235567777777542 1222 2
Q ss_pred CCh-hhHHHhhcC----------------------------------------CcEEEeeccccCcHHHHhccCccEEee
Q psy2323 339 GDK-PLYDFVHNN----------------------------------------ELVQMKRGTYSNDPAIIRQNHRMTAIN 377 (509)
Q Consensus 339 G~~-~ly~~i~~n----------------------------------------~~~~~~~~~~~n~p~~i~~~~~~vain 377 (509)
|.. .+-+.+.+| +.+.|-.-+|.-. ..++-++|+.
T Consensus 79 g~~p~~~~~~~~g~ie~~~~pqg~l~~~lRA~a~G~Pg~~t~~glGT~v~~gk~~~~~~G~~~l~~----~a~~~DvAlI 154 (219)
T PRK09920 79 GTNPETGRRMISGEMDVELVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLE----RPLRADLALI 154 (219)
T ss_pred cCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceeeccccCccccCCCceeEECCeEEEEE----ecCCCcEEEE
Confidence 211 111111111 1122211112222 2234589999
Q ss_pred ceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEE
Q psy2323 378 TCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQY 456 (509)
Q Consensus 378 ~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~ 456 (509)
=+-..|.+||+--+.- .+ ..-..+++.|+.+ |....--. +.| +. | ..|.+|...||+
T Consensus 155 ~a~~AD~~GN~~~~~~-~~-----~~~~~~A~AA~~v-------Iv~ve~iV-~~g~l~---P-----~~v~iPg~~VD~ 212 (219)
T PRK09920 155 RAHRADTLGNLTYQLS-AR-----NFNPLIALAADIT-------LVEPDELV-ETGELQ---P-----DHIVTPGAVIDH 212 (219)
T ss_pred EecccCCCCCEEEECc-cc-----cCCHHHHhhCCeE-------EEEEEEEe-cCCCcC---C-----ceEEcCceeEEE
Confidence 9999999999865431 12 2234488877754 65443333 333 21 2 267899999999
Q ss_pred EEc
Q psy2323 457 VVT 459 (509)
Q Consensus 457 vVT 459 (509)
||-
T Consensus 213 VV~ 215 (219)
T PRK09920 213 IIV 215 (219)
T ss_pred EEe
Confidence 973
No 33
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=94.05 E-value=0.19 Score=50.46 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHHc
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNT 98 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~~ 98 (509)
++.|+++|++||+|+++++. .-..+.+.|.+ .+++|++++.. .-...+......+.. +..|+.++
T Consensus 82 A~~Aa~~I~~g~tIfld~Gt-T~~~la~~L~~------~~~ltVvTnsl-~ia~~l~~~~~~~~v--~l~GG~~~----- 146 (256)
T PRK10434 82 AEAAVSLIHDGDSIILDAGS-TVLQMVPLLSR------FNNITVMTNSL-HIVNALSELDNEQTI--LMPGGTFR----- 146 (256)
T ss_pred HHHHHhhCCCCCEEEEcCcH-HHHHHHHHhcc------CCCeEEEECCH-HHHHHHhhCCCCCEE--EEECCEEe-----
Confidence 55688999999999998763 22345555532 24799998632 110011100011111 11222111
Q ss_pred CCceeecCCC---ChH-HHHHHccCCCCcEEEEEecCCCCCC-cEEeccCcchhHHHHhccCcEEEEeccc
Q psy2323 99 GAAEYIPIML---NDL-PMVFDRGYFSPDVALISVSPPDASG-FVSLGTNVVELLSVIRGSKRVIAQINDR 164 (509)
Q Consensus 99 G~i~f~P~~l---s~~-~~~l~~g~~~iDVAlI~vs~~De~G-n~slg~s~~~~~~~a~aAk~VIvEVn~~ 164 (509)
|... +.. .+.|+ .+.+|.||+.++-.|+++ ..........-..+++.|+++|+-++..
T Consensus 147 ------~~~~~~~G~~a~~~l~--~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~s 209 (256)
T PRK10434 147 ------KKSASFHGQLAENAFE--HFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSS 209 (256)
T ss_pred ------CCCCeEECHHHHHHHH--hCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCc
Confidence 1111 111 23453 478999999999999664 4333333445678899999999888764
No 34
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=93.08 E-value=0.43 Score=47.41 Aligned_cols=125 Identities=11% Similarity=0.083 Sum_probs=69.1
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVN 97 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~ 97 (509)
=+..|+++|+|||+|+++++. +...+.+.|. .++||++++.. .....+.. ...++. +..++.+++..
T Consensus 83 IA~~Aa~lI~~gd~Ifld~Gt-T~~~l~~~L~-------~~~ltVvTNs~-~ia~~l~~-~~~~~v--il~GG~~~~~~- 149 (240)
T PRK10411 83 IAREALAWIEEGMVIALDASS-TCWYLARQLP-------DINIQVFTNSH-PICQELGK-RERIQL--ISSGGTLERKY- 149 (240)
T ss_pred HHHHHHHhCCCCCEEEEcCcH-HHHHHHHhhC-------CCCeEEEeCCH-HHHHHHhc-CCCCEE--EEECCEEeCCC-
Confidence 356688999999999998763 2344555552 13699998632 11111111 011111 11222111000
Q ss_pred cCCceeecCCCCh-HHHHHHccCCCCcEEEEEecCCCCCCcEE-ecc-CcchhHHHHhccCcEEEEeccc
Q psy2323 98 TGAAEYIPIMLND-LPMVFDRGYFSPDVALISVSPPDASGFVS-LGT-NVVELLSVIRGSKRVIAQINDR 164 (509)
Q Consensus 98 ~G~i~f~P~~ls~-~~~~l~~g~~~iDVAlI~vs~~De~Gn~s-lg~-s~~~~~~~a~aAk~VIvEVn~~ 164 (509)
. ..++. ..+.|. .+.+|.||+.++-.|.++-++ ... ++..-..++..|+.+|+-++..
T Consensus 150 ---~----~~~G~~a~~~l~--~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~s 210 (240)
T PRK10411 150 ---G----CYVNPSLISQLK--SLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKS 210 (240)
T ss_pred ---C----ceECHHHHHHHH--hcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEecc
Confidence 0 00111 123443 478999999999998654343 332 3456788999999998888763
No 35
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=93.03 E-value=0.35 Score=48.37 Aligned_cols=124 Identities=9% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHHc
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNT 98 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~~ 98 (509)
++.|+++|+|||+|++.++. +-..|.+.| . . +++|++++.. .....+.. ...+.. +.+|+.++.
T Consensus 84 A~~Aa~~I~~g~~Ifld~Gs-T~~~la~~L----~--~-~~ltVvTnsl-~ia~~l~~-~~~~~v--~l~GG~~~~---- 147 (251)
T PRK13509 84 AKAASQLCNPGESVVINCGS-TAFLLGREL----C--G-KPVQIITNYL-PLANYLID-QEHDSV--IIMGGQYNK---- 147 (251)
T ss_pred HHHHHHhCCCCCEEEECCcH-HHHHHHHHh----C--C-CCeEEEeCCH-HHHHHHHh-CCCCEE--EEECCeEcC----
Confidence 56688999999999998763 223444444 2 1 3699998632 11111110 011111 122322211
Q ss_pred CCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEecc-CcchhHHHHhccCcEEEEeccc
Q psy2323 99 GAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGT-NVVELLSVIRGSKRVIAQINDR 164 (509)
Q Consensus 99 G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~-s~~~~~~~a~aAk~VIvEVn~~ 164 (509)
....++ +...+.++ .+.+|.||+.++-.|++|...... +......++++|+.+|+-++..
T Consensus 148 ~~~~~~----G~~~~~l~--~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDss 208 (251)
T PRK13509 148 SQSITL----SPQGSENS--LYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSS 208 (251)
T ss_pred CcceeE----CHHHHHHH--hCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEccc
Confidence 001111 11224453 478999999999999777443322 2445678999999999888763
No 36
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=92.75 E-value=0.89 Score=44.86 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=70.8
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.-+++|+++|+|||+|++|.++ +...++++|+++..++.+ +++.+. .+...+...
T Consensus 10 ~aa~~A~~~V~~gmvvGLGTGS-Tv~~~i~~L~~~~~~~~l-~i~~Vp-----------------------tS~~t~~~a 64 (228)
T PRK13978 10 MTLNDVLSQINGDMTLGIGTGS-TMELLLPQMAQLIKERGY-NITGVC-----------------------TSNKIAFLA 64 (228)
T ss_pred HHHHHHHHhCCCCCEEEeCchH-HHHHHHHHHHHHhhccCc-cEEEEe-----------------------CcHHHHHHH
Confidence 5788899999999999998664 456688999998642222 222221 222333333
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
.+-.+..++. . ...++|+||=-+-..|.+.|+.=|.... ...-++.+|++.|+-+++
T Consensus 65 ~~~Gipl~~l---------~-~~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~A~~~iii~D~ 123 (228)
T PRK13978 65 KELGIKICEI---------N-DVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDE 123 (228)
T ss_pred HHcCCcEech---------h-hCCceeEEEecCceecCCccEEecCcHHHHHHHHHHHhcCcEEEEEeC
Confidence 3322222221 1 1235899998888999999988765433 467788899866666654
No 37
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=92.65 E-value=0.33 Score=49.09 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=68.8
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHHc
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNT 98 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~~ 98 (509)
++.|+++|+|||+|+++++. .-..|.+.|.+ .+++|++++.. .....+.. ...+.. +..++.++
T Consensus 97 A~~Aa~~I~dgd~Ifld~Gt-T~~~la~~L~~------~~~ltVvTnsl-~ia~~l~~-~~~~~v--~llGG~~~----- 160 (269)
T PRK09802 97 AKAAVELIQPGHRVILDSGT-TTFEIARLMRK------HTDVIAMTNGM-NVANALLE-AEGVEL--LMTGGHLR----- 160 (269)
T ss_pred HHHHHhhCCCCCEEEECCch-HHHHHHHhcCc------CCCeEEEeCCH-HHHHHHHh-CCCCEE--EEECCEEe-----
Confidence 45677899999999998773 23445555422 24799998632 11111110 011111 11221111
Q ss_pred CCceeecCCC---Ch-HHHHHHccCCCCcEEEEEecCCCCCCcEE-ecc-CcchhHHHHhccCcEEEEeccc
Q psy2323 99 GAAEYIPIML---ND-LPMVFDRGYFSPDVALISVSPPDASGFVS-LGT-NVVELLSVIRGSKRVIAQINDR 164 (509)
Q Consensus 99 G~i~f~P~~l---s~-~~~~l~~g~~~iDVAlI~vs~~De~Gn~s-lg~-s~~~~~~~a~aAk~VIvEVn~~ 164 (509)
|... +. ..+.|. .+.+|.||+.++-.|.++-++ ... ++..-..+++.|+++|+-++..
T Consensus 161 ------~~~~~~~G~~a~~~l~--~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~s 224 (269)
T PRK09802 161 ------RQSQSFYGDQAEQSLQ--NYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSS 224 (269)
T ss_pred ------cCCCceECHHHHHHHH--hccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEecc
Confidence 1111 11 124453 478999999999998654343 332 3456788999999998888763
No 38
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=92.49 E-value=0.79 Score=45.01 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=67.5
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.=++.|+++|++||+|+++.++ +-..++++|.++... + .++|++++.. ......
T Consensus 9 ~IA~~Aa~lI~dg~~IgLgsGS-T~~~l~~~L~~~~~~-~-~~itvVt~S~-----------------------~~a~~l 62 (220)
T PRK00702 9 AAAEAAAEYVEDGMIVGLGTGS-TAAYFIDALGERVKE-G-LIIGGVPTSE-----------------------ASTELA 62 (220)
T ss_pred HHHHHHHHhCCCCCEEEECCcH-HHHHHHHHHHhhhcc-C-CCEEEECCcH-----------------------HHHHHH
Confidence 4577899999999999999774 346688888765321 1 2566654311 111111
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
.+..+..+ .+. ...++|+||.-+...|.+.|+.-|.... ....++.+|+++|+-+++
T Consensus 63 ~~~gi~v~---------~l~-~~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~~~vil~D~ 121 (220)
T PRK00702 63 KELGIPLF---------DLN-EVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVDE 121 (220)
T ss_pred HhCCCeEE---------cHH-HCCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcCcEEEEEEc
Confidence 11112211 122 1236899999999999998887763322 235566888876666654
No 39
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=91.91 E-value=0.31 Score=45.36 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
+..++||+.++. +|+||++|=++-|+....++..|.++++|.|-|-.+. -+..|.+..-+. -+.+
T Consensus 4 ~~K~~IA~~A~~-~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~-ia~~l~~~~~~~-------------vi~~ 68 (161)
T PF00455_consen 4 EEKRAIARKAAS-LIEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTNSLP-IANELSENPNIE-------------VILL 68 (161)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEECchHHHHHHHHhhcCCceEEEECCHH-HHHHHHhcCceE-------------EEEe
Confidence 568999999999 9999999999999999999999999889999887753 334444443111 1222
Q ss_pred CChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCC
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 418 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~ 418 (509)
|-+ ++.+.+ .+.... -.+.+++.+-+.+|.|+--+|..+.+-........+ .--+.+.|+
T Consensus 69 GG~-----~~~~~~-~~~G~~---a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~v-----k~~~~~~s~------ 128 (161)
T PF00455_consen 69 GGE-----VNPKSL-SFVGPI---ALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEV-----KRAMIENSK------ 128 (161)
T ss_pred CCE-----EEcCCC-cEECch---HHHHHHhhccceEEecccEecCCCccccchHHHHHH-----HHHHHHhcC------
Confidence 221 000000 000000 013456666689999999999865554433221110 011333343
Q ss_pred CcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccc
Q psy2323 419 GKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEY 461 (509)
Q Consensus 419 g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~ 461 (509)
+.|+...|+- =|.... ....+-.++|++||+.
T Consensus 129 -~~ill~D~sK--f~~~~~--------~~~~~l~~id~iITD~ 160 (161)
T PF00455_consen 129 -QVILLADSSK--FGRNSF--------YKIADLSDIDYIITDK 160 (161)
T ss_pred -eEEEEeChhh--cCCeee--------EEEECHHHCCEEEeCc
Confidence 3477776653 221111 1223456788898874
No 40
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=91.74 E-value=0.35 Score=48.43 Aligned_cols=118 Identities=20% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC--------CCcEEEec-cc
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE--------DDCVRRLS-FF 87 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~--------~~~v~~~s-~f 87 (509)
.=++.|+.+|+|||+|++..+. +...+.++|.+. .+||++++.. .....+... +|.++..+ .|
T Consensus 80 ~IA~~Aa~lI~~g~~ifld~GT-T~~~la~~L~~~------~~ltviTNsl-~ia~~l~~~~~~~vi~~GG~~~~~~~~~ 151 (253)
T COG1349 80 AIAKAAATLIEDGDTIFLDAGT-TTLALARALPDD------NNLTVITNSL-NIAAALLEKPNIEVILLGGTVRKKSGSF 151 (253)
T ss_pred HHHHHHHhhCCCCCEEEECCCc-HHHHHHHHhCcC------CCeEEEeCCH-HHHHHHHhCCCCeEEEeCcEEEcCCCeE
Confidence 4577888999999999998664 356666666443 4499997632 111111110 12222111 12
Q ss_pred cCHHHHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCC-CcEEec-cCcchhHHHHhccCcEEEEecc
Q psy2323 88 VSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDAS-GFVSLG-TNVVELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 88 ~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~-Gn~slg-~s~~~~~~~a~aAk~VIvEVn~ 163 (509)
.++ ...+.+. .+.+|.||+.++-.|.+ |-..+. .+...-..++.+|+.+|+-++.
T Consensus 152 ~G~-------------------~a~~~l~--~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~ 208 (253)
T COG1349 152 VGP-------------------LAEEFLR--QFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADS 208 (253)
T ss_pred EcH-------------------HHHHHHH--hCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcC
Confidence 222 1234454 57899999999999955 443343 2344578899999999998874
No 41
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=91.40 E-value=2.7 Score=41.31 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=89.5
Q ss_pred HHHhhcCCCCeecccc---CchHHHHHHhhhc--cCCeeEEe-C-Ccc-hhHHHHHHhcCcccccccccCCceeeeccC-
Q psy2323 268 ICDELLEDEATLQIGL---GKIPEAILSNIKH--QINLGVHT-E-LLT-PGVIKLFNSGVINNSKKSIDRGQITATLLL- 338 (509)
Q Consensus 268 va~~~i~dg~~lqlGi---G~ip~aV~~~L~~--~~~lgiht-E-~~~-d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~- 338 (509)
++. +|+||++|-+|= .+.|+++...|.+ .+||.+.+ - ... -++=.|+.+|.+... .++|..
T Consensus 12 Av~-~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g~~~L~~~G~Vkr~---------i~s~~~~ 81 (222)
T TIGR02429 12 AVS-VIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLAALLKAGQVRKL---------ICSFPRQ 81 (222)
T ss_pred HHh-hCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCccHHHHHhCCCEeEE---------EccccCC
Confidence 445 899999998553 3599999999865 38999755 2 122 235567777777542 222210
Q ss_pred CC-hhhHHHhhcCC-cEEEeecc----------------------------------ccCcHH-HHhccCccEEeeceee
Q psy2323 339 GD-KPLYDFVHNNE-LVQMKRGT----------------------------------YSNDPA-IIRQNHRMTAINTCLE 381 (509)
Q Consensus 339 G~-~~ly~~i~~n~-~~~~~~~~----------------------------------~~n~p~-~i~~~~~~vain~a~E 381 (509)
+. ..+-+.+.++. .++++|+. |...+. ....++-++|+-=+-.
T Consensus 82 ~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t~~glGT~v~~g~~~~~f~G~~~l~~~a~~~DvAlIha~~ 161 (222)
T TIGR02429 82 SDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFTPTGYGTLLAEGKETREFDGKGYVLEYPLPADFALIKAHK 161 (222)
T ss_pred CCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceeeccccCccccCCcEEEEECCcEEEEEcCCCCcEEEEEecc
Confidence 11 01111111111 11111111 000010 1223455899999999
Q ss_pred eecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEcc
Q psy2323 382 IDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTE 460 (509)
Q Consensus 382 vDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE 460 (509)
.|.+||+--+. .. ..-..++++.|+.+ |+....-. +.| +. |+ .|.+|...||+||-.
T Consensus 162 AD~~GN~~~~~--~~----~~~~~~~A~AAk~v-------Iv~vE~IV-~~g~l~---P~-----~v~iPg~~VDaVv~~ 219 (222)
T TIGR02429 162 ADRWGNLTYRK--AA----RNFGPIMAMAAKTT-------IAQVSQVV-ELGELD---PE-----DVITPGIFVQRVVEV 219 (222)
T ss_pred cCCCCcEEEEC--cc----ccCCHHHHhhcCcE-------EEEEEEEe-cCCCcC---Cc-----eEEcCceEEEEEEeC
Confidence 99999985543 21 12334588888775 66554443 344 31 22 678999999999854
No 42
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=91.31 E-value=0.43 Score=51.27 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=54.9
Q ss_pred cEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCC
Q psy2323 373 MTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRA 452 (509)
Q Consensus 373 ~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~ 452 (509)
++|+.-+.-.|..||+.-|.=+-. .+-.++++.|+.. | |+.|.-....+ +.| .+-|+ .|..|.-
T Consensus 171 dValiRgTtADe~GNit~e~E~~~-----~~~L~iAqAakn~-g--G~VIaQVkrvv-~~g--sl~pk-----~V~VPG~ 234 (527)
T COG4670 171 DVALIRGTTADERGNITFEDEGAY-----LEGLSIAQAAKNN-G--GIVIAQVKRVV-KKG--TLKPK-----DVRVPGI 234 (527)
T ss_pred CEEEEeccccccCCceeeehhhhh-----hhhHHHHHHHHhc-C--CeEEEEehhhh-hcc--CCCcc-----eeEcCcc
Confidence 688888999999999988875433 6778999988887 7 88887777766 665 11122 4667788
Q ss_pred ceE-EEEccce
Q psy2323 453 HVQ-YVVTEYG 462 (509)
Q Consensus 453 ~v~-~vVTE~G 462 (509)
-|| +||+|..
T Consensus 235 LVDyvvV~~~~ 245 (527)
T COG4670 235 LVDYVIVVEDP 245 (527)
T ss_pred eeeEEEEecCh
Confidence 899 5578774
No 43
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=91.26 E-value=2.2 Score=41.68 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=95.6
Q ss_pred HHHHHhhcCCCCeeccc----cCchHHHHHHhhhcc--CCeeEEeCC--cch-hHHHHHHhcCcccccccccCCceeeec
Q psy2323 266 NHICDELLEDEATLQIG----LGKIPEAILSNIKHQ--INLGVHTEL--LTP-GVIKLFNSGVINNSKKSIDRGQITATL 336 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlG----iG~ip~aV~~~L~~~--~~lgihtE~--~~d-~~~~l~e~G~i~~~~k~~~~g~~~~~~ 336 (509)
+-++. .++||+||-+| .| +|.++...|.++ |||.+-+-. +.| ++-.|+..|.+... ++++
T Consensus 9 ~ea~~-~~~dG~ti~~gGFg~~g-~P~alI~ali~~GvkdLt~I~n~~g~~d~glg~li~~~~vkk~---------i~S~ 77 (220)
T COG1788 9 EEAVA-NVKDGDTIMIGGFGTCG-IPEALIHALIRQGVKDLTVISNNAGFPDLGLGKLIGNGQVKKM---------IASY 77 (220)
T ss_pred HHHHh-hCCCCCEEEEccccccC-ChHHHHHHHHHcCCcceEEEecCCCCCcccHHHHhhcCcEEEE---------EEec
Confidence 34555 78899999874 45 999999999875 999987654 445 67888888887542 3333
Q ss_pred cCCChhhHHHhhcCC-cEEEeeccc----------------------------------cCcHH-HHhccCccEEeecee
Q psy2323 337 LLGDKPLYDFVHNNE-LVQMKRGTY----------------------------------SNDPA-IIRQNHRMTAINTCL 380 (509)
Q Consensus 337 ~~G~~~ly~~i~~n~-~~~~~~~~~----------------------------------~n~p~-~i~~~~~~vain~a~ 380 (509)
-..+..+.+.+.... .+++.|++- ..-+. ....+.-|+|+--+-
T Consensus 78 ig~n~~~~r~~~~geleve~~pqgtLaerirAgg~Glp~~~t~tg~Gt~v~~gk~~~~~~G~~yvle~~lraDvAiI~a~ 157 (220)
T COG1788 78 IGSNPEFGRQMLAGELEVELVPQGTLAERIRAGGAGLPGFPTRTGVGTLVAEGKVTRPFDGEPYVLEPALRADVALIHAH 157 (220)
T ss_pred cCCCHHHHHHhhcceEEEEECCchHHHHHHHhhhcCCCcceeccccCceeecCcEEEeeCCeEEEEecccCcceEEEEee
Confidence 322333333332222 344444330 00011 112234478888888
Q ss_pred eeecCCCccccCCCCcccccccc--HHHHhcccccCCCCCCcEEEEeecccCCCCccceec--cccCCCccccCCCceEE
Q psy2323 381 EIDITGQVVSDSLGTRIYSGFGG--QVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVP--TIKPGAGVVCSRAHVQY 456 (509)
Q Consensus 381 EvDl~G~vn~~~~g~r~~sG~GG--~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~--~~~~g~~vt~~~~~v~~ 456 (509)
..|.+||+--+. +-+ ...++..|++. |+- ...||| .+. ..++.+|+-.||+
T Consensus 158 kaD~~GNl~y~~--------t~~nfn~~~A~AAk~~-------Ive---------vEeIV~~gel~-P~~v~tPg~~Vd~ 212 (220)
T COG1788 158 KADSHGNLTYRG--------TARNFNPLMAMAAKRT-------IVE---------VEEIVPLGELD-PEEVVTPGIFVDA 212 (220)
T ss_pred ecCCcCCEEEEc--------ccccCCHHHHhhcCeE-------EEE---------EEeeeccCccC-ccceecchheeEE
Confidence 999999986444 333 34455555554 442 245555 333 2478899999999
Q ss_pred EEcc
Q psy2323 457 VVTE 460 (509)
Q Consensus 457 vVTE 460 (509)
||=.
T Consensus 213 vV~~ 216 (220)
T COG1788 213 VVEV 216 (220)
T ss_pred EEec
Confidence 9743
No 44
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.90 E-value=3.6 Score=40.51 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=72.0
Q ss_pred CccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHH
Q psy2323 14 MELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTR 93 (509)
Q Consensus 14 ~Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r 93 (509)
+|...+.+|+++|++|+.|.+|.++ +...++++|.++.+ ++ -+++.++ .+...+
T Consensus 6 ~K~~aa~~A~~~v~~gmviGlGTGS-T~~~fI~~Lg~~~~-~e-~~i~~V~-----------------------TS~~t~ 59 (227)
T COG0120 6 LKKAAAKAALEYVKDGMVIGLGTGS-TAAYFIEALGRRVK-GE-LDIGGVP-----------------------TSFQTE 59 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCcH-HHHHHHHHHHHhhc-cC-ccEEEEe-----------------------CCHHHH
Confidence 4457899999999999999999875 57889999987432 01 1222221 122223
Q ss_pred HHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcch--hHHHHhccCcEEEEecc
Q psy2323 94 KYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVE--LLSVIRGSKRVIAQIND 163 (509)
Q Consensus 94 ~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~--~~~~a~aAk~VIvEVn~ 163 (509)
.+..+.-+...+. .....+|+++=-+-..|+++|+.=|.-... ..-++.+|++-|+-|++
T Consensus 60 ~l~~~~GI~v~~l----------~~~~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDe 121 (227)
T COG0120 60 ELARELGIPVSSL----------NEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDE 121 (227)
T ss_pred HHHHHcCCeecCc----------cccCccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeC
Confidence 3333322222221 112248999999999999999887654433 45578888865555554
No 45
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=86.25 E-value=1.3 Score=44.83 Aligned_cols=157 Identities=12% Similarity=0.184 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
+..++||+.++. +|+||++|=++-|+.-..++..|.++++|.|-|-.+. -...|.+.--+ .-+.+
T Consensus 91 ~~K~~IA~~Aa~-~I~dgd~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~-ia~~l~~~~~~-------------~v~ll 155 (269)
T PRK09802 91 AMKRSVAKAAVE-LIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMN-VANALLEAEGV-------------ELLMT 155 (269)
T ss_pred HHHHHHHHHHHh-hCCCCCEEEECCchHHHHHHHhcCcCCCeEEEeCCHH-HHHHHHhCCCC-------------EEEEE
Confidence 668999999999 9999999999999999999999988778999886642 22333322111 11223
Q ss_pred CChhhHHHhhcCCcEEEeeccccCc--HHHHhccCccEEeeceeeeecCCCccccCCC-CccccccccHHHHhcccccCC
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSND--PAIIRQNHRMTAINTCLEIDITGQVVSDSLG-TRIYSGFGGQVDFMRGALTGL 415 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n~--p~~i~~~~~~vain~a~EvDl~G~vn~~~~g-~r~~sG~GG~~Df~~gA~~s~ 415 (509)
|-. ++.+. ..++.. ...|.+..-+.||.|+--+|..+-+...... ... .-=+.+.|.
T Consensus 156 GG~-----~~~~~------~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~------kr~~i~~s~--- 215 (269)
T PRK09802 156 GGH-----LRRQS------QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARL------NRRMCEVAE--- 215 (269)
T ss_pred CCE-----EecCC------CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHH------HHHHHHHcC---
Confidence 322 00000 000111 1345666668999999999976555433221 110 011334443
Q ss_pred CCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEE
Q psy2323 416 DGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCA 464 (509)
Q Consensus 416 ~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva 464 (509)
+.|+...|+- =|.... ....+-.++|++||+.+.-
T Consensus 216 ----~~ill~D~sK--f~~~~~--------~~~~~l~~id~iITD~~~~ 250 (269)
T PRK09802 216 ----RIIVVTDSSK--FNRSSL--------HKIIDTQRIDMIIVDEGIP 250 (269)
T ss_pred ----cEEEEEeccc--cCCcce--------EEecCHHHCCEEEECcCCC
Confidence 4488777663 221111 1223457789999988643
No 46
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=85.10 E-value=1.4 Score=43.92 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLT 308 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~ 308 (509)
+..++||+.++. +|+||++|=++-|+....++..|.+.++|.+-|-.+.
T Consensus 77 ~~K~~IA~~Aa~-lI~~g~tIflD~GtT~~~la~~L~~~~~ltvvTnsl~ 125 (252)
T PRK10681 77 EEKRRAAQLAAT-LVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLN 125 (252)
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEECCccHHHHHHhcCCCCCeEEEECCHH
Confidence 568999999999 9999999999999999999999988778999886543
No 47
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=83.92 E-value=2 Score=41.79 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHHc
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNT 98 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~~ 98 (509)
+.-|+..|+||++|.+|-+ .|......|.+ + +++++++-.+.-.. ...+. .+...-.+++.
T Consensus 7 a~~aA~~i~dg~~v~lGiG--iP~~va~~l~~-----~-~~l~l~~E~G~~g~-~p~p~----------~~~~~~~l~~~ 67 (207)
T TIGR02428 7 AARAAQELKDGDYVNLGIG--IPTLVANYLPE-----G-IEVFLQSENGILGM-GPAPE----------PGEEDPDLINA 67 (207)
T ss_pred HHHHHHhcCCCCEEEEeec--HHHHHHHHHhc-----C-CeEEEEEeCceecC-ccCCC----------CCCcCHHHHhC
Confidence 4557788999999998844 78877766643 1 48888765321100 00010 00001122233
Q ss_pred CCc--eeecC--CCChHHHHHHccCCCCcEEEEEecCCCCCCcEEecc-------CcchhHHHHhccCcEEEEe
Q psy2323 99 GAA--EYIPI--MLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGT-------NVVELLSVIRGSKRVIAQI 161 (509)
Q Consensus 99 G~i--~f~P~--~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~-------s~~~~~~~a~aAk~VIvEV 161 (509)
|.+ .+.|. .+++...+-.+..-.+|++++-+...|.+||++-.. ..+-..++++.|+++|+=.
T Consensus 68 g~~~~~~~~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d~~~~a~~~i~~~ 141 (207)
T TIGR02428 68 GKQPVTLLPGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLANWMIPGKLVPGMGGAMDLVAGAKRVIVAM 141 (207)
T ss_pred CCCceeeccCcEEecChhheeeEcCCceeEEEechHHhCCCCcccccccCCccccccCchhhhhcCCCEEEEEE
Confidence 221 11111 022222211122346899999999999999987321 1123678888898877654
No 48
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=83.61 E-value=2 Score=43.02 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELL 307 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~ 307 (509)
+..++||+.++. +|+||++|=++-|+.-..++..|.+.++|.|-|-.+
T Consensus 76 ~~K~~IA~~Aa~-~I~~g~tIfld~GtT~~~la~~L~~~~~ltVvTnsl 123 (256)
T PRK10434 76 HKKELIAEAAVS-LIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSL 123 (256)
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEcCcHHHHHHHHHhccCCCeEEEECCH
Confidence 568999999999 999999999999999999999998877898888664
No 49
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=81.43 E-value=2.4 Score=41.68 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~ 297 (509)
++..++||++++. +|+||++|=+|-|+....++..|.++
T Consensus 4 ~~~K~~IA~~Aa~-lI~dg~~IgLgsGST~~~l~~~L~~~ 42 (220)
T PRK00702 4 DELKKAAAEAAAE-YVEDGMIVGLGTGSTAAYFIDALGER 42 (220)
T ss_pred HHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHhh
Confidence 3567899999999 99999999999999998899999764
No 50
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=80.89 E-value=2.8 Score=41.60 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
+..++||+.++. +|+||++|=++-|+....++..|.++ +|.+-|-.+.=. ..|.+.- + +..+.+
T Consensus 78 ~~K~~IA~~Aa~-lI~~gd~Ifld~GtT~~~l~~~L~~~-~ltVvTNs~~ia-~~l~~~~---~----------~~vil~ 141 (240)
T PRK10411 78 AHKADIAREALA-WIEEGMVIALDASSTCWYLARQLPDI-NIQVFTNSHPIC-QELGKRE---R----------IQLISS 141 (240)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEcCcHHHHHHHHhhCCC-CeEEEeCCHHHH-HHHhcCC---C----------CEEEEE
Confidence 568899999999 99999999999999999999999765 788888665321 2232211 1 112233
Q ss_pred CChhhHHHhhcCCcEEEeeccccCc--HHHHhccCccEEeeceeeeecCCCccccCCC-CccccccccHHHHhcccccCC
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSND--PAIIRQNHRMTAINTCLEIDITGQVVSDSLG-TRIYSGFGGQVDFMRGALTGL 415 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n~--p~~i~~~~~~vain~a~EvDl~G~vn~~~~g-~r~~sG~GG~~Df~~gA~~s~ 415 (509)
|.+ ++.. ...++.. ...+++..-+.+|.|+--+|..+-+.....- ... .--+...|.+
T Consensus 142 GG~-----~~~~------~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~------k~~~~~~a~~-- 202 (240)
T PRK10411 142 GGT-----LERK------YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADY------KSMLLKRAAQ-- 202 (240)
T ss_pred CCE-----EeCC------CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHH------HHHHHHHhCc--
Confidence 322 0000 0011111 1345666668999999999976545443321 110 1123344444
Q ss_pred CCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccce
Q psy2323 416 DGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYG 462 (509)
Q Consensus 416 ~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~G 462 (509)
.|+.+.|+- =|... . ....+-.++|++||+..
T Consensus 203 -----~ill~D~sK--f~~~~---~-----~~~~~l~~id~lITD~~ 234 (240)
T PRK10411 203 -----SLLLIDKSK--FNRSG---E-----ARIGHLDEVTHIISDER 234 (240)
T ss_pred -----EEEEEeccc--cCCcc---c-----eEecCHHHCCEEEECCC
Confidence 487777663 22100 0 12334577899999864
No 51
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=80.30 E-value=9 Score=37.61 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=34.6
Q ss_pred CCCcEEEEEecCCCCCCcEEe---cc----CcchhHHHHhccCcEEEEeccc
Q psy2323 120 FSPDVALISVSPPDASGFVSL---GT----NVVELLSVIRGSKRVIAQINDR 164 (509)
Q Consensus 120 ~~iDVAlI~vs~~De~Gn~sl---g~----s~~~~~~~a~aAk~VIvEVn~~ 164 (509)
-++|++++-+-..|++||+.- +. -.+-+.+++..||+||+-.++.
T Consensus 98 Ghidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gakkvii~m~H~ 149 (225)
T COG2057 98 GHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAKKVIVVMEHT 149 (225)
T ss_pred CceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCcEEEEEeeee
Confidence 378999999999999999863 21 1223688899999988877654
No 52
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=80.08 E-value=3.1 Score=41.50 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELL 307 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~ 307 (509)
+..++||+.+|. +|+||++|=++-|+....++..|.++ +|.|-|-.+
T Consensus 78 ~~K~~IA~~Aa~-~I~~g~~Ifld~GsT~~~la~~L~~~-~ltVvTnsl 124 (251)
T PRK13509 78 DEKVRIAKAASQ-LCNPGESVVINCGSTAFLLGRELCGK-PVQIITNYL 124 (251)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHhCCC-CeEEEeCCH
Confidence 568999999999 99999999999999999999999764 788888765
No 53
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=78.82 E-value=5.8 Score=38.03 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCCeecccc--C-chHHHHHHhhh----ccCCee------EE-eCCcchh-H-HHHHHhcCccccccccc
Q psy2323 265 ANHICDELLEDEATLQIGL--G-KIPEAILSNIK----HQINLG------VH-TELLTPG-V-IKLFNSGVINNSKKSID 328 (509)
Q Consensus 265 a~~va~~~i~dg~~lqlGi--G-~ip~aV~~~L~----~~~~lg------ih-tE~~~d~-~-~~l~e~G~i~~~~k~~~ 328 (509)
|+-++. +|++|+.|-.|- + +.|.++...|. +.++++ ++ .+.+..+ . -.+-..+.....
T Consensus 12 a~eA~~-~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~----- 85 (198)
T PF02550_consen 12 AEEAAS-LIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFR----- 85 (198)
T ss_dssp HHHHHT-TS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEE-----
T ss_pred HHHHHH-hCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhcc-----
Confidence 567888 999999998775 2 14666666665 324443 22 2222211 1 111122221111
Q ss_pred CCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCc--cEEeeceeeeecCCCccc
Q psy2323 329 RGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHR--MTAINTCLEIDITGQVVS 390 (509)
Q Consensus 329 ~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~--~vain~a~EvDl~G~vn~ 390 (509)
..+|..|.. . +-..++..+++.|.-+++-|..+++... ++++..+.-.|..|.++.
T Consensus 86 ----~~s~f~~~~-~-R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~sl 143 (198)
T PF02550_consen 86 ----HNSFFVGPN-E-RKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSL 143 (198)
T ss_dssp ----EEESS--HH-H-HHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEEC
T ss_pred ----cCcccCCHH-H-HHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEee
Confidence 134544422 2 2233355788999999999998876533 899999999999998764
No 54
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=78.74 E-value=8.2 Score=39.24 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred cEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeeccc-----CCCCccceecc--ccCCC
Q psy2323 373 MTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTD-----VSTGLSKIVPT--IKPGA 445 (509)
Q Consensus 373 ~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~-----~k~G~skIV~~--~~~g~ 445 (509)
+..+.||=-|-..|.|. .++|+.+ .+.-|+.- |+.++++.-+. ...|--.|..+ ..+|.
T Consensus 179 d~VivGAD~I~~nG~v~-NKiGT~~---------lA~~Ak~~----~vPfyV~a~~~k~~~~~~~~~i~ieer~~~~~~~ 244 (275)
T PRK08335 179 TLALVGADNVTRDGYVV-NKAGTYL---------LALACHDN----GVPFYVAAETFKFHPELKSEEVELVERPYARQGH 244 (275)
T ss_pred CEEEECccEEecCCCEe-ehhhHHH---------HHHHHHHc----CCCEEEECccceecccCCCCCccccccCCCCCCc
Confidence 57788888888888764 3666665 56666655 66666553322 01220001111 01111
Q ss_pred cc------ccCCCceEEEEccceEEE
Q psy2323 446 GV------VCSRAHVQYVVTEYGCAD 465 (509)
Q Consensus 446 ~v------t~~~~~v~~vVTE~Gva~ 465 (509)
.| .||...++.||||+|++.
T Consensus 245 ~v~Np~FDvTP~~lIt~iITE~Gv~~ 270 (275)
T PRK08335 245 RVRNVLFDVTPWKYVRGIITELGILV 270 (275)
T ss_pred eecCcCccCCCHHHCCEEEccCCccC
Confidence 11 246777999999999984
No 55
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=71.27 E-value=6.2 Score=38.50 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc-----CCeeEEeCC
Q psy2323 261 DSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ-----INLGVHTEL 306 (509)
Q Consensus 261 ~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~-----~~lgihtE~ 306 (509)
.++||+.+++ +|+||++|=+|-|+....++..|.++ +++.+-|-.
T Consensus 2 K~~IA~~A~~-~I~~g~~I~ldsGST~~~l~~~L~~~~~~~~~~itvVTnS 51 (213)
T cd01398 2 KRAAARAAVD-YVEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTS 51 (213)
T ss_pred HHHHHHHHHH-hCCCCCEEEECchHHHHHHHHHHHHhhhccCCCEEEEeCc
Confidence 4789999999 99999999999999999999999764 256655533
No 56
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=67.89 E-value=51 Score=33.53 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHH-HHHHHc
Q psy2323 20 EQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYT-RKYVNT 98 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~-r~~i~~ 98 (509)
+.++++|++|++|.+.+.++.-..++....++ -++++++..-+ .| ++.+..+ +++.+.
T Consensus 101 ~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~-----gk~~~V~v~Es-------rP---------~~qG~~la~eL~~~ 159 (275)
T PRK08335 101 NIGSELIDDGDVIITHSFSSAVLEILKTAKRK-----GKRFKVILTES-------AP---------DYEGLALANELEFL 159 (275)
T ss_pred HHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc-----CCceEEEEecC-------CC---------chhHHHHHHHHHHC
Confidence 45668999999999998887666666555443 25567764311 11 2223233 334444
Q ss_pred C-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEE
Q psy2323 99 G-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVS 139 (509)
Q Consensus 99 G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~s 139 (509)
| .+.+++- +.+..++. ++|.+++-+-..-.+|.+.
T Consensus 160 GI~vtlI~D--sa~~~~m~----~vd~VivGAD~I~~nG~v~ 195 (275)
T PRK08335 160 GIEFEVITD--AQLGLFAK----EATLALVGADNVTRDGYVV 195 (275)
T ss_pred CCCEEEEec--cHHHHHHH----hCCEEEECccEEecCCCEe
Confidence 4 1334332 33333443 2899999999888899753
No 57
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=67.52 E-value=48 Score=34.14 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCee-ccccCchHHHHHHhhhc-cCCeeE-EeCCcch----hH-HHHHHhcCcccccccccC
Q psy2323 258 TEIDSAIANHICDELLEDEATL-QIGLGKIPEAILSNIKH-QINLGV-HTELLTP----GV-IKLFNSGVINNSKKSIDR 329 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~l-qlGiG~ip~aV~~~L~~-~~~lgi-htE~~~d----~~-~~l~e~G~i~~~~k~~~~ 329 (509)
....+.||...+. .|.||.+| -.|....-..++...++ .+++.+ -||.-.. .+ -.|-++| |.-.
T Consensus 103 ~~a~~~ia~~~a~-~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~g-I~~~------ 174 (301)
T COG1184 103 EKAKERIAEIGAE-RIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSG-IPVT------ 174 (301)
T ss_pred HHHHHHHHHHHHh-hccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcC-CceE------
Confidence 3568899999999 99999754 45555433333333333 255664 4775432 12 2333444 2111
Q ss_pred CceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhc
Q psy2323 330 GQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMR 409 (509)
Q Consensus 330 g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~ 409 (509)
.-. ....+-++ .+- +..+.|+=-|...|.+ ..++|+.+ ++.
T Consensus 175 ------~I~-Dsa~~~~~--------------------~~v--d~VivGad~I~~nG~l-vnkiGT~~---------lA~ 215 (301)
T COG1184 175 ------VIV-DSAVGAFM--------------------SRV--DKVLVGADAILANGAL-VNKIGTSP---------LAL 215 (301)
T ss_pred ------EEe-chHHHHHH--------------------HhC--CEEEECccceecCCcE-EeccchHH---------HHH
Confidence 111 11122222 222 5778888777777755 45778776 677
Q ss_pred ccccCCCCCCcEEEEeecccCCC--------------C-ccce------------eccccCCCccccCCCceEEEEccce
Q psy2323 410 GALTGLDGKGKAILALPSTDVST--------------G-LSKI------------VPTIKPGAGVVCSRAHVQYVVTEYG 462 (509)
Q Consensus 410 gA~~s~~~~g~~ii~~~st~~k~--------------G-~skI------------V~~~~~g~~vt~~~~~v~~vVTE~G 462 (509)
-|+.. |+.++++..+. |= + .+.+ .|.++ -||...+|+||||.|
T Consensus 216 ~A~e~----~~Pf~v~aesy-Kf~p~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~Np~fD-----~TP~~~Id~iITe~G 285 (301)
T COG1184 216 AAREL----RVPFYVVAESY-KFVPKTLLDTLVEIELRDPLEVAREEPLGNLKVRNPAFD-----VTPPEYIDAIITELG 285 (301)
T ss_pred HHHHh----CCCEEEEeeee-cccccccCCCcceeeccChhhccccCcccCccccccccC-----CCcHHHhheeeecCC
Confidence 77777 88899888776 20 0 1111 12221 256788999999999
Q ss_pred E
Q psy2323 463 C 463 (509)
Q Consensus 463 v 463 (509)
+
T Consensus 286 ~ 286 (301)
T COG1184 286 I 286 (301)
T ss_pred C
Confidence 8
No 58
>PLN02384 ribose-5-phosphate isomerase
Probab=67.50 E-value=18 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKH 296 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~ 296 (509)
...+..|+++++ ++++|++|-||-|+....+...|.+
T Consensus 34 ~~K~~aA~~A~~-~V~~gmvVGLGTGSTv~~~I~~La~ 70 (264)
T PLN02384 34 ELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGE 70 (264)
T ss_pred HHHHHHHHHHHH-hccCCCEEEecchHHHHHHHHHHHH
Confidence 346677888888 9999999999999888777778776
No 59
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=65.16 E-value=10 Score=37.15 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc
Q psy2323 261 DSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 261 ~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~ 297 (509)
.++||+.+++ +|+||++|=+|-|+.-..++..|.++
T Consensus 2 K~~IA~~A~~-~I~~g~~I~ldsGST~~~~~~~L~~~ 37 (218)
T TIGR00021 2 KRAAAEAAAE-YVEDGMVVGLGTGSTVAYFIEALGER 37 (218)
T ss_pred HHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 4789999999 99999999999999888888888764
No 60
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=61.38 E-value=41 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhcCCCCe
Q psy2323 259 EIDSAIANHICDELLEDEAT 278 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~ 278 (509)
..+++|++++++ +|+||++
T Consensus 103 ~~~~~Ia~~a~~-~I~~g~~ 121 (303)
T TIGR00524 103 ETNRKIGENGAK-LIKDGDT 121 (303)
T ss_pred HHHHHHHHHHHH-HccCCCE
Confidence 357899999999 9999873
No 61
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=57.09 E-value=34 Score=35.80 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy2323 259 EIDSAIANHICDELLEDEA 277 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~ 277 (509)
..+++||++.++ +|+||+
T Consensus 127 ~~~~~I~~~g~~-~I~dg~ 144 (331)
T TIGR00512 127 EDNRAIGENGAA-LIKKGV 144 (331)
T ss_pred HHHHHHHHHHHH-HhcCCC
Confidence 458999999999 999998
No 62
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=56.03 E-value=50 Score=34.71 Aligned_cols=46 Identities=28% Similarity=0.352 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhcCCCCee----------ccccCchHHHHHHhhhc-cCCeeEE-eCC
Q psy2323 259 EIDSAIANHICDELLEDEATL----------QIGLGKIPEAILSNIKH-QINLGVH-TEL 306 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~l----------qlGiG~ip~aV~~~L~~-~~~lgih-tE~ 306 (509)
...++|+++.++ +|+||++| ..|.| ...++...+.+ .+++.++ +|.
T Consensus 131 ~~~~~I~~~g~~-~I~~g~~ILThc~sg~lat~~~g-Tal~~i~~A~~~gk~~~V~v~Es 188 (344)
T PRK05720 131 EINRAIGEHGLT-LIRKGQGILTHCNAGWLATAGYG-TALAPIYAAKEKGIDIHVYADET 188 (344)
T ss_pred HHHHHHHHHHHH-HccCCCEEEEecCCCcceecchh-HHHHHHHHHHHcCCceEEEEcCC
Confidence 457899999999 99998632 33566 34445544433 4666643 553
No 63
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=52.42 E-value=1.6e+02 Score=30.44 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=72.6
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHH-HHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYT-RKYV 96 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~-r~~i 96 (509)
.++-++.+|+||++|.+.+++..-..++..-+++ .++++++-.-+ .| -+.+..+ +++-
T Consensus 109 ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~-----~k~~~V~VtES-------RP---------~~eG~~~ak~L~ 167 (301)
T COG1184 109 IAEIGAERIHDGDVILTHSFSKTVLEVLKTAADR-----GKRFKVIVTES-------RP---------RGEGRIMAKELR 167 (301)
T ss_pred HHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhc-----CCceEEEEEcC-------CC---------cchHHHHHHHHH
Confidence 4556678999999999999876566666555444 35577774422 12 1113333 3444
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEe--ccCcchhHHHHhccC---cEEEEecccCCCC
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSL--GTNVVELLSVIRGSK---RVIAQINDRMPRS 168 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~sl--g~s~~~~~~~a~aAk---~VIvEVn~~vP~~ 168 (509)
+.| ++.+..-=|.+..++. ++|.+++-+-...++|++.= |++ -....|+.++ .|.+|--+..|+.
T Consensus 168 ~~g-I~~~~I~Dsa~~~~~~----~vd~VivGad~I~~nG~lvnkiGT~--~lA~~A~e~~~Pf~v~aesyKf~p~~ 237 (301)
T COG1184 168 QSG-IPVTVIVDSAVGAFMS----RVDKVLVGADAILANGALVNKIGTS--PLALAARELRVPFYVVAESYKFVPKT 237 (301)
T ss_pred HcC-CceEEEechHHHHHHH----hCCEEEECccceecCCcEEeccchH--HHHHHHHHhCCCEEEEeeeecccccc
Confidence 555 4433322233334443 48999999999999997642 332 1122233333 5777877778855
No 64
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=44.94 E-value=2.4e+02 Score=29.11 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=67.9
Q ss_pred HHHhhcCCCCCEEEEcCCC--------CChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccC-H
Q psy2323 20 EQAVQFIKPNSLVFVEGVV--------GTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVS-P 90 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~--------g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~-~ 90 (509)
+.|+++|+||++|.+.+.+ +.-..+++..+++ + +..+++..-+ .| ++.+ .
T Consensus 110 ~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~----g-~~~~V~v~Es-------rP---------~~~G~~ 168 (303)
T TIGR00524 110 ENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWED----G-KRIRVIACET-------RP---------RNQGSR 168 (303)
T ss_pred HHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHc----C-CceEEEECCC-------CC---------ccchHH
Confidence 4577899999999998876 6666677666544 2 4566663211 11 1122 1
Q ss_pred -HHHHHHHcC-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHH-hccC---cEEEEeccc
Q psy2323 91 -YTRKYVNTG-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVI-RGSK---RVIAQINDR 164 (509)
Q Consensus 91 -~~r~~i~~G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a-~aAk---~VIvEVn~~ 164 (509)
..+++.+.| .+.+++. +.+..++. ...+|.+|+-+...-++|.+.=-. ..+..+++ +..+ .|.+|.-+.
T Consensus 169 ~~a~~L~~~gI~vtlI~D--sa~~~~m~--~~~vd~VlvGAd~v~~nG~v~nk~-GT~~lA~~Ak~~~vPv~V~a~s~K~ 243 (303)
T TIGR00524 169 LTAWELMQDGIDVTLITD--SMAAYFMQ--KGEIDAVIVGADRIARNGDVANKI-GTYQLAVLAKEFRIPFFVAAPLSTF 243 (303)
T ss_pred HHHHHHHHCCCCEEEECh--hHHHHHcc--ccCCCEEEEcccEEecCCCEeEhh-hHHHHHHHHHHhCCCEEEecccccc
Confidence 234455555 2334432 23333333 235899999999998999764211 11233222 2223 355666676
Q ss_pred CCCC
Q psy2323 165 MPRS 168 (509)
Q Consensus 165 vP~~ 168 (509)
.|..
T Consensus 244 ~~~~ 247 (303)
T TIGR00524 244 DTKT 247 (303)
T ss_pred cCCC
Confidence 6654
No 65
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=44.06 E-value=17 Score=27.47 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=33.6
Q ss_pred ccceEEEc-CCCCHHHHHHHhhccCCCccHHHHHHHHHHHh
Q psy2323 459 TEYGCADL-FAKSTRQRAHALIRIAHPQHREALEREAYEIL 498 (509)
Q Consensus 459 TE~Gva~L-rG~~l~ErA~~li~iAhp~fr~~L~~~a~~~~ 498 (509)
-|.|.||. |+.++.|.|..| +|+.+.+-+.|+..-++++
T Consensus 13 ~~~GYfd~PR~~tl~elA~~l-gis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 13 YELGYFDVPRRITLEELAEEL-GISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHcCCCCCCCcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHh
Confidence 47899975 899999999999 7999999999988777654
No 66
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=41.31 E-value=2.4e+02 Score=29.04 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=67.1
Q ss_pred HHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHH-HHHHHHc
Q psy2323 20 EQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPY-TRKYVNT 98 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~-~r~~i~~ 98 (509)
+.|+++|+||++|.+.+.++.-..++....++ -++.+++..-+ .| .+.+.. .+++.+.
T Consensus 107 ~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~-----~~~f~V~v~Es-------rP---------~~~G~~~a~~L~~~ 165 (301)
T TIGR00511 107 EIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQ-----GKDIEVIATET-------RP---------RKQGHITAKELRDY 165 (301)
T ss_pred HHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc-----CCcEEEEEecC-------CC---------cchHHHHHHHHHHC
Confidence 45668999999999998887666666555443 14566764321 11 111222 2344445
Q ss_pred C-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHH-HhccC---cEEEEecccCCCC
Q psy2323 99 G-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSV-IRGSK---RVIAQINDRMPRS 168 (509)
Q Consensus 99 G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~-a~aAk---~VIvEVn~~vP~~ 168 (509)
| .+.+++- +.+.-.+. ++|.+++-+...-++|.+.=.. ..+..++ |+..+ .|.+|.-+..|..
T Consensus 166 gI~vtlI~D--sa~~~~m~----~vd~VivGad~v~~nG~v~nki-GT~~lA~~Ak~~~vPv~V~a~~~K~~~~~ 233 (301)
T TIGR00511 166 GIPVTLIVD--SAVRYFMK----EVDHVVVGADAITANGALINKI-GTSQLALAAREARVPFMVAAETYKFHPKT 233 (301)
T ss_pred CCCEEEEeh--hHHHHHHH----hCCEEEECccEEecCCCEEEHH-hHHHHHHHHHHhCCCEEEEcccceecCCC
Confidence 5 2444443 33333443 3899999999888899764211 1122222 22222 3555666666654
No 67
>KOG4169|consensus
Probab=41.16 E-value=74 Score=31.74 Aligned_cols=134 Identities=14% Similarity=0.104 Sum_probs=74.4
Q ss_pred CcEEEeeccccCcHHH-------HhccC-ccEEeece-----------eeeecCCCccccCCC----CccccccccHHHH
Q psy2323 351 ELVQMKRGTYSNDPAI-------IRQNH-RMTAINTC-----------LEIDITGQVVSDSLG----TRIYSGFGGQVDF 407 (509)
Q Consensus 351 ~~~~~~~~~~~n~p~~-------i~~~~-~~vain~a-----------~EvDl~G~vn~~~~g----~r~~sG~GG~~Df 407 (509)
+++.|.+.+.+|--.+ .++.. -||.||+| +.|+|+|=+|++.+. ++.-.|.||-
T Consensus 55 ~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGi--- 131 (261)
T KOG4169|consen 55 VSVIFIKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGI--- 131 (261)
T ss_pred ceEEEEEeccccHHHHHHHHHHHHHHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcE---
Confidence 3777888887775422 22211 26888887 456777777766632 2222444443
Q ss_pred hcccccCCCCCCcEEEEeecccCCCCccceeccccC--CCccccCCCceE-EEEccceEEEc---CCCCHHHHHHHhhc-
Q psy2323 408 MRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKP--GAGVVCSRAHVQ-YVVTEYGCADL---FAKSTRQRAHALIR- 480 (509)
Q Consensus 408 ~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~--g~~vt~~~~~v~-~vVTE~Gva~L---rG~~l~ErA~~li~- 480 (509)
|+=+.|.++=+ =.-+.|-... -+.|-|+|..-+ .+.+-.||.=. -|.+-.+-++.+.+
T Consensus 132 --------------IvNmsSv~GL~-P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~ 196 (261)
T KOG4169|consen 132 --------------IVNMSSVAGLD-PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDAS 196 (261)
T ss_pred --------------EEEeccccccC-ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhc
Confidence 55566654100 1112222211 014445554221 22355666533 29999999999986
Q ss_pred cCCCccHHHHHHHHHHHhcCCC
Q psy2323 481 IAHPQHREALEREAYEILKVMP 502 (509)
Q Consensus 481 iAhp~fr~~L~~~a~~~~~~~~ 502 (509)
..-+++.+...+..+..-+.+|
T Consensus 197 ~~~~e~~~~~~~~l~~~~~q~~ 218 (261)
T KOG4169|consen 197 GGYLEYSDSIKEALERAPKQSP 218 (261)
T ss_pred CCcccccHHHHHHHHHcccCCH
Confidence 8888888888776665544444
No 68
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=36.80 E-value=38 Score=33.49 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc
Q psy2323 260 IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 260 ~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~ 297 (509)
..+..|+.+++ +++||++|-||-|+....+...|.++
T Consensus 7 ~K~~aa~~A~~-~V~~gmvvGLGTGSTv~~~i~~L~~~ 43 (228)
T PRK13978 7 LKLMTLNDVLS-QINGDMTLGIGTGSTMELLLPQMAQL 43 (228)
T ss_pred HHHHHHHHHHH-hCCCCCEEEeCchHHHHHHHHHHHHH
Confidence 45678888898 99999999999998888888888763
No 69
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=36.55 E-value=2.7e+02 Score=28.73 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHH-HHHHHH
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPY-TRKYVN 97 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~-~r~~i~ 97 (509)
++.|.++|+||++|.+.+.++.-..++....++ -++.+++..-+ .| .+.+.. .+++.+
T Consensus 111 ~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~-----~k~~~V~v~Es-------rP---------~~~G~~~a~~L~~ 169 (310)
T PRK08535 111 GEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQ-----GKDIEVIATET-------RP---------RNQGHITAKELAE 169 (310)
T ss_pred HHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHC-----CCeEEEEEecC-------Cc---------hhhHHHHHHHHHH
Confidence 355668999999999988887666666555443 24567764321 12 111222 234444
Q ss_pred cC-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHH-hccC---cEEEEecccCCCC
Q psy2323 98 TG-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVI-RGSK---RVIAQINDRMPRS 168 (509)
Q Consensus 98 ~G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a-~aAk---~VIvEVn~~vP~~ 168 (509)
.| .+.+++- +.+...+. ++|.+|+-+...-++|.+.=- ...+..+++ +..+ .|.++.-+..|..
T Consensus 170 ~GI~vtlI~D--sav~~~m~----~vd~VivGAd~v~~nG~v~nk-iGT~~~A~~Ak~~~vPv~V~a~~~K~~~~~ 238 (310)
T PRK08535 170 YGIPVTLIVD--SAVRYFMK----DVDKVVVGADAITANGAVINK-IGTSQIALAAHEARVPFMVAAETYKFSPKT 238 (310)
T ss_pred CCCCEEEEeh--hHHHHHHH----hCCEEEECccEEecCCCEEeH-HhHHHHHHHHHHhCCCEEEecccceecCCC
Confidence 55 2344443 33433443 389999999988889975411 111222222 2222 3555666666654
No 70
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=34.13 E-value=1.3e+02 Score=33.18 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=88.0
Q ss_pred HHHHHHhhcCCCCeeccc--cCchHHHHHHhhhcc--------CCee--EEeCCcc--hhHHHHHHhcCcccccccccCC
Q psy2323 265 ANHICDELLEDEATLQIG--LGKIPEAILSNIKHQ--------INLG--VHTELLT--PGVIKLFNSGVINNSKKSIDRG 330 (509)
Q Consensus 265 a~~va~~~i~dg~~lqlG--iG~ip~aV~~~L~~~--------~~lg--ihtE~~~--d~~~~l~e~G~i~~~~k~~~~g 330 (509)
+.-++. +|++|++|-+| .++-|-++...|+++ ++|. +.++.=. |....+.++|.+--..
T Consensus 19 ~~Eaa~-~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l~i~~~~gas~~~~~~~~~~~a~~~~~r~------ 91 (501)
T COG0427 19 PEEAAS-LIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGADEDLKLAEAGEVIRRA------ 91 (501)
T ss_pred HHHHHH-hhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCceEEEEEeccccCcchhhhhhcccchhhhC------
Confidence 445677 99999999887 233677777777652 2443 4454321 3456777776654421
Q ss_pred ceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccC---ccEEeeceeeeecCCCccccCCCCccccccccHHHH
Q psy2323 331 QITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNH---RMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDF 407 (509)
Q Consensus 331 ~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~---~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df 407 (509)
.+..+ ...-..++. ..+.|.|.-++.-|+..+... -++|+.-+.-+|-.|-++.. +|+|...-+
T Consensus 92 ----p~q~~-~~~Rk~iN~-g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~~G~~i~g-------~svg~~~~~ 158 (501)
T COG0427 92 ----PYQVY-SPVRKAINE-GGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDEHGYIIPG-------TSVGNSKSW 158 (501)
T ss_pred ----ccccC-HHHHHHHhc-cCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccCCceEeec-------cccCCcHHH
Confidence 12222 112222222 134466666666666554432 27999999999999887764 667888889
Q ss_pred hcccccCCCCCCcEEEEeecccC-CCCccceec
Q psy2323 408 MRGALTGLDGKGKAILALPSTDV-STGLSKIVP 439 (509)
Q Consensus 408 ~~gA~~s~~~~g~~ii~~~st~~-k~G~skIV~ 439 (509)
+++|.++ |+-.-..-. -+|.+.|+.
T Consensus 159 ~~~A~kV-------IveVN~~~p~~~~~hdi~~ 184 (501)
T COG0427 159 AEGAEKV-------IVEVNKYMPALEGLHDIVR 184 (501)
T ss_pred HhhccEE-------EEEhhccCcchhhccceee
Confidence 9999987 765433320 234555553
No 71
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=30.15 E-value=2.9e+02 Score=27.64 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=61.5
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHH-HHHHH
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYT-RKYVN 97 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~-r~~i~ 97 (509)
++.+.++|++|++|.+-|.+..-.. .|.+..+ .-++++++..-+ .| .+-+..+ +++.+
T Consensus 98 ~~~~~~~I~~~~~ILT~~~S~~v~~---~l~~a~~--~~~~~~V~v~es-------~P---------~~eG~~~a~~L~~ 156 (282)
T PF01008_consen 98 ADHASELINDGDTILTHGYSSTVER---FLLSAKK--KGKKFRVIVLES-------RP---------YNEGRLMAKELAE 156 (282)
T ss_dssp HHHHHCCC-TTEEEEEES--SHHHH---HHHHHHH--TTEEEEEEEE---------TT---------TTHHHTHHHHHHH
T ss_pred HHHHHHhccCCeEEEEeCCchHHHH---HHHHHHH--cCCeEEEEEccC-------Cc---------chhhhhHHHHhhh
Confidence 3557789999999999988665444 4433222 225677764422 11 1111122 33334
Q ss_pred cC-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccC------cEEEEecccCCCC
Q psy2323 98 TG-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSK------RVIAQINDRMPRS 168 (509)
Q Consensus 98 ~G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk------~VIvEVn~~vP~~ 168 (509)
.| .+.|+|. +.+...+.. .+|.+++.+...-++|.+.=... +..+|.+|+ .|++|.-+..|+.
T Consensus 157 ~gi~v~~i~d--~~~~~~m~~---~vd~VliGad~v~~nG~v~nk~G---t~~~a~~Ak~~~vPv~v~~~~~K~~~~~ 226 (282)
T PF01008_consen 157 AGIPVTLIPD--SAVGYVMPR---DVDKVLIGADAVLANGGVVNKVG---TLQLALAAKEFNVPVYVLAESYKFSPRY 226 (282)
T ss_dssp TT-EEEEE-G--GGHHHHHHC---TESEEEEE-SEEETTS-EEEETT---HHHHHHHHHHTT-EEEEE--GGGBETTC
T ss_pred cceeEEEEec--hHHHHHHHH---hCCeeEEeeeEEecCCCEeehhh---HHHHHHHHHhhCCCEEEEcccccccccc
Confidence 44 2455553 444445542 58999999999999997642211 122333333 4666776666653
No 72
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=27.03 E-value=7.2e+02 Score=26.14 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHHhhcCCCCCEEEEcCCCC--------ChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHH
Q psy2323 20 EQAVQFIKPNSLVFVEGVVG--------TPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPY 91 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~g--------~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~ 91 (509)
+.++++|+||++|.+.+.+| +...++++..++ -++.+++..-+ .| ++.+..
T Consensus 138 ~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~-----gk~~~V~v~Es-------RP---------~~qG~~ 196 (344)
T PRK05720 138 EHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEK-----GIDIHVYADET-------RP---------RLQGAR 196 (344)
T ss_pred HHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHc-----CCceEEEEcCC-------CC---------hhhhHH
Confidence 34678999999999876543 445566655443 24566664311 11 222321
Q ss_pred --HHHHHHcC-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEE
Q psy2323 92 --TRKYVNTG-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVS 139 (509)
Q Consensus 92 --~r~~i~~G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~s 139 (509)
..++.+.| .+.+++- +.+..++.. ..+|.+++-+-..-++|.+.
T Consensus 197 lta~eL~~~GI~vtlI~D--sa~~~~M~~--~~vd~VivGAd~I~~nG~v~ 243 (344)
T PRK05720 197 LTAWELYQAGIDVTVITD--NMAAHLMQT--GKIDAVIVGADRIAANGDVA 243 (344)
T ss_pred HHHHHHHHCCCCEEEEcc--cHHHHHhcc--cCCCEEEEcccEEecCCCEe
Confidence 24455555 2344432 233333432 35899999999888899764
No 73
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=23.29 E-value=66 Score=25.55 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=19.8
Q ss_pred CccCCHHHHh--hcCCCCCEEEEcCC
Q psy2323 14 MELISKEQAV--QFIKPNSLVFVEGV 37 (509)
Q Consensus 14 ~Kv~SaeEA~--~~I~dGdtI~~gg~ 37 (509)
||.+-.++|+ +.+++||+|.++++
T Consensus 40 L~~~Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 40 LKKLGVEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHCCHHHHHHHcCCCCCCEEEEccE
Confidence 5567889988 46999999999874
No 74
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=22.97 E-value=78 Score=33.14 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=49.9
Q ss_pred EEEeecccCCCC-ccceeccccCCCccccCCCceEEEEc--cceEEEcCCCCHHHHHHHhhc-cCCCccHHHHHHHHHHH
Q psy2323 422 ILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVT--EYGCADLFAKSTRQRAHALIR-IAHPQHREALEREAYEI 497 (509)
Q Consensus 422 ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVT--E~Gva~LrG~~l~ErA~~li~-iAhp~fr~~L~~~a~~~ 497 (509)
++++||.. .+| -.|++.....|-+|-++.....-++. +.|+.- -.+..+-|.+|.. +.+|+.|.++.+++++.
T Consensus 300 v~v~Ps~~-~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv--~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 300 VAVAPLRI-ARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLV--AADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred EEEecccc-cCCcccHHHHHHHcCCCEEecCcccccccccCCcceEe--CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 78888864 467 45788887777766665432222322 334332 2588999999987 78899899998888764
No 75
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=22.53 E-value=8e+02 Score=25.68 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=65.3
Q ss_pred HHHhhcCCCCC----EEEEcCCC--------CChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccc
Q psy2323 20 EQAVQFIKPNS----LVFVEGVV--------GTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFF 87 (509)
Q Consensus 20 eEA~~~I~dGd----tI~~gg~~--------g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f 87 (509)
+.++++|+||+ +|.+.+.+ |....+++..+++ + +..+++..-+ .| ++
T Consensus 134 ~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~----g-~~~~V~v~Es-------rP---------~~ 192 (331)
T TIGR00512 134 ENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK----G-RLEHVYADET-------RP---------RL 192 (331)
T ss_pred HHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc----C-CceEEEECCC-------Cc---------hh
Confidence 45778899999 99886543 4455555555443 1 4566664311 11 22
Q ss_pred cCHH--HHHHHHcCC-ceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhc-cC---cEEEE
Q psy2323 88 VSPY--TRKYVNTGA-AEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRG-SK---RVIAQ 160 (509)
Q Consensus 88 ~~~~--~r~~i~~G~-i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~a-Ak---~VIvE 160 (509)
.+.. .+++.+.|- +.+++- +.+..++. ...+|.+++-+...-++|.+. .....+..+++.+ .+ .|.++
T Consensus 193 qG~rlta~~L~~~GI~vtlI~D--sav~~~m~--~~~vd~VivGAd~v~~nG~v~-nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 193 QGARLTAWELVQEGIPATLITD--SMAAHLMK--HGEVDAVIVGADRIAANGDTA-NKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred hHHHHHHHHHHHCCCCEEEEcc--cHHHHHhc--ccCCCEEEEcccEEecCCCEe-ehhhHHHHHHHHHHhCCCEEEecc
Confidence 2221 245556662 444443 23333333 236899999999998999763 2112233333322 22 35556
Q ss_pred ecccCCC
Q psy2323 161 INDRMPR 167 (509)
Q Consensus 161 Vn~~vP~ 167 (509)
.-+.-|.
T Consensus 268 ~~kfd~~ 274 (331)
T TIGR00512 268 TSTIDLE 274 (331)
T ss_pred ccccccC
Confidence 5555544
Done!