Query psy2323
Match_columns 509
No_of_seqs 219 out of 1406
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 21:41:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qli_A Coenzyme A transferase; 100.0 3E-112 1E-116 897.3 39.3 425 1-497 16-452 (455)
2 3eh7_A 4-hydroxybutyrate COA-t 100.0 6E-111 2E-115 889.7 37.2 428 1-499 5-434 (434)
3 3gk7_A 4-hydroxybutyrate COA-t 100.0 9E-110 3E-114 881.1 40.8 433 1-502 1-438 (448)
4 2oas_A ATOA, 4-hydroxybutyrate 100.0 5E-108 2E-112 870.0 39.4 419 15-499 5-425 (436)
5 3d3u_A 4-hydroxybutyrate COA-t 100.0 5E-103 2E-107 834.4 37.5 429 1-500 1-432 (439)
6 2g39_A Acetyl-COA hydrolase; c 100.0 2.4E-99 8E-104 813.3 33.9 430 6-498 10-468 (497)
7 2nvv_A Acetyl-COA hydrolase/tr 100.0 5.1E-98 2E-102 804.6 30.3 428 15-497 4-463 (506)
8 4eu9_A Succinyl-COA:acetate co 100.0 2.7E-95 9E-100 787.8 31.0 442 4-499 7-475 (514)
9 1xr4_A Putative citrate lyase 100.0 2.4E-84 8.1E-89 698.8 25.4 404 17-503 47-482 (509)
10 2hj0_A Putative citrate lyase, 100.0 1.1E-83 3.6E-88 694.6 21.6 403 14-503 46-486 (519)
11 2ahu_A Putative enzyme YDIF; C 100.0 8.1E-64 2.8E-68 542.3 13.3 391 15-491 14-506 (531)
12 3k6m_A Succinyl-COA:3-ketoacid 100.0 8.9E-64 3.1E-68 533.6 11.6 403 16-505 4-480 (481)
13 1poi_A Glutaconate coenzyme A- 100.0 4.2E-36 1.5E-40 306.3 3.2 240 15-309 2-317 (317)
14 3rrl_B Succinyl-COA:3-ketoacid 100.0 6.6E-35 2.2E-39 279.6 4.9 192 261-493 2-198 (207)
15 1poi_B Glutaconate coenzyme A- 100.0 2.3E-33 7.7E-38 278.1 5.4 187 260-490 7-229 (260)
16 1k6d_A Acetate COA-transferase 99.9 1.1E-28 3.9E-33 239.3 6.1 158 15-177 4-206 (220)
17 3cdk_A Succinyl-COA:3-ketoacid 99.9 9.8E-28 3.3E-32 235.7 9.2 157 15-175 6-207 (241)
18 3rrl_A Succinyl-COA:3-ketoacid 99.9 1.2E-26 4E-31 226.6 14.1 149 15-168 7-199 (235)
19 1k6d_A Acetate COA-transferase 97.0 0.00097 3.3E-08 63.9 7.2 160 266-458 9-214 (220)
20 3rrl_A Succinyl-COA:3-ketoacid 96.9 0.0016 5.3E-08 63.2 7.5 159 267-458 13-217 (235)
21 3cdk_A Succinyl-COA:3-ketoacid 96.8 0.0073 2.5E-07 58.6 11.3 160 266-458 12-217 (241)
22 1poi_A Glutaconate coenzyme A- 96.5 0.0044 1.5E-07 62.7 7.3 156 270-458 12-238 (317)
23 1vb5_A Translation initiation 96.0 0.033 1.1E-06 55.0 10.7 150 259-466 94-271 (276)
24 2f8m_A Ribose 5-phosphate isom 95.9 0.063 2.1E-06 52.1 11.8 115 15-163 13-130 (244)
25 2hj0_A Putative citrate lyase, 95.7 0.032 1.1E-06 60.0 10.0 160 265-458 52-229 (519)
26 2g39_A Acetyl-COA hydrolase; c 95.7 0.089 3E-06 56.3 13.0 128 266-414 19-160 (497)
27 1xr4_A Putative citrate lyase 95.6 0.027 9.2E-07 60.5 8.8 161 265-458 49-226 (509)
28 2nvv_A Acetyl-COA hydrolase/tr 95.2 0.1 3.4E-06 56.0 11.6 128 266-414 9-155 (506)
29 2pjm_A Ribose-5-phosphate isom 95.2 0.11 3.7E-06 49.9 10.4 110 18-163 10-122 (226)
30 3d3u_A 4-hydroxybutyrate COA-t 95.2 0.013 4.5E-07 61.8 4.4 130 265-413 14-151 (439)
31 1lk5_A D-ribose-5-phosphate is 95.1 0.1 3.5E-06 50.1 10.2 113 17-163 9-123 (229)
32 2ahu_A Putative enzyme YDIF; C 95.0 0.1 3.4E-06 56.3 11.0 166 266-459 19-252 (531)
33 1uj6_A Ribose 5-phosphate isom 94.9 0.071 2.4E-06 51.2 8.5 112 17-163 11-124 (227)
34 3l7o_A Ribose-5-phosphate isom 94.8 0.082 2.8E-06 50.7 8.5 112 17-163 7-120 (225)
35 2oas_A ATOA, 4-hydroxybutyrate 94.7 0.03 1E-06 58.9 5.8 152 266-458 10-172 (436)
36 1xtz_A Ribose-5-phosphate isom 94.0 0.37 1.3E-05 47.2 11.3 113 17-163 24-145 (264)
37 3hhe_A Ribose-5-phosphate isom 93.0 0.35 1.2E-05 47.1 9.2 111 17-163 30-142 (255)
38 1poi_B Glutaconate coenzyme A- 92.3 0.34 1.2E-05 47.4 8.2 120 19-160 12-149 (260)
39 1m0s_A Ribose-5-phosphate isom 92.1 0.4 1.4E-05 45.7 8.1 108 17-163 9-119 (219)
40 4gmk_A Ribose-5-phosphate isom 91.6 0.41 1.4E-05 45.8 7.6 114 15-163 8-123 (228)
41 3kwm_A Ribose-5-phosphate isom 91.4 0.31 1.1E-05 46.6 6.5 108 17-163 15-125 (224)
42 1o8b_A Ribose 5-phosphate isom 91.4 0.15 5.2E-06 48.6 4.3 108 17-163 9-119 (219)
43 3eh7_A 4-hydroxybutyrate COA-t 91.3 0.14 4.7E-06 53.9 4.4 128 266-413 19-154 (434)
44 4eu9_A Succinyl-COA:acetate co 91.2 0.46 1.6E-05 50.9 8.4 129 265-414 17-164 (514)
45 3qli_A Coenzyme A transferase; 89.5 0.45 1.5E-05 50.2 6.3 132 265-414 29-176 (455)
46 3gk7_A 4-hydroxybutyrate COA-t 88.7 1.8 6.2E-05 45.5 10.3 128 266-414 15-151 (448)
47 3rrl_B Succinyl-COA:3-ketoacid 87.1 1.7 5.8E-05 40.9 8.0 119 19-162 6-140 (207)
48 1m0s_A Ribose-5-phosphate isom 84.5 0.84 2.9E-05 43.4 4.5 48 259-307 5-54 (219)
49 1vb5_A Translation initiation 83.3 6 0.00021 38.7 10.3 94 19-139 100-195 (276)
50 1uj6_A Ribose 5-phosphate isom 83.2 1.7 5.9E-05 41.4 6.1 49 258-307 6-60 (227)
51 1lk5_A D-ribose-5-phosphate is 83.2 1.2 3.9E-05 42.7 4.9 48 259-307 5-58 (229)
52 3kwm_A Ribose-5-phosphate isom 78.0 2.8 9.5E-05 40.0 5.6 48 258-306 10-59 (224)
53 2pjm_A Ribose-5-phosphate isom 77.9 2.5 8.5E-05 40.3 5.2 48 259-307 5-57 (226)
54 4evu_A Putative periplasmic pr 77.9 5.2 0.00018 31.2 6.1 51 14-65 6-56 (72)
55 3uw1_A Ribose-5-phosphate isom 76.0 2.7 9.1E-05 40.5 4.9 108 17-163 17-131 (239)
56 3hhe_A Ribose-5-phosphate isom 74.7 2.5 8.4E-05 41.1 4.3 40 257-297 24-63 (255)
57 3k6m_A Succinyl-COA:3-ketoacid 74.3 4.2 0.00014 43.1 6.3 161 266-459 8-232 (481)
58 1o8b_A Ribose 5-phosphate isom 73.4 0.75 2.6E-05 43.8 0.3 43 259-302 5-48 (219)
59 3l7o_A Ribose-5-phosphate isom 73.2 3.9 0.00013 38.9 5.2 39 258-297 2-40 (225)
60 3ixq_A Ribose-5-phosphate isom 71.4 1.8 6.2E-05 41.3 2.4 111 17-163 9-122 (226)
61 3a11_A Translation initiation 69.7 31 0.0011 34.7 11.3 117 259-426 126-250 (338)
62 2yvk_A Methylthioribose-1-phos 69.2 19 0.00066 36.7 9.7 46 259-306 158-215 (374)
63 2f8m_A Ribose 5-phosphate isom 69.0 4.1 0.00014 39.3 4.3 49 258-306 10-64 (244)
64 3ecs_A Translation initiation 65.3 37 0.0013 33.8 10.6 93 20-139 113-207 (315)
65 3ecs_A Translation initiation 60.8 19 0.00064 35.9 7.5 47 259-306 106-155 (315)
66 1t5o_A EIF2BD, translation ini 59.0 54 0.0018 33.1 10.6 46 259-306 131-188 (351)
67 1xtz_A Ribose-5-phosphate isom 58.7 9.6 0.00033 37.1 4.9 41 257-297 18-60 (264)
68 1t9k_A Probable methylthioribo 54.9 64 0.0022 32.5 10.4 46 259-306 133-190 (347)
69 3ixq_A Ribose-5-phosphate isom 44.1 16 0.00056 34.6 3.8 38 258-296 4-41 (226)
70 3uw1_A Ribose-5-phosphate isom 41.6 12 0.00039 36.0 2.3 40 257-297 11-54 (239)
71 4gmk_A Ribose-5-phosphate isom 39.8 19 0.00066 34.2 3.5 38 258-296 5-42 (228)
72 2w48_A Sorbitol operon regulat 35.9 41 0.0014 33.0 5.4 46 259-304 90-141 (315)
73 1t9k_A Probable methylthioribo 29.6 2.9E+02 0.0099 27.6 10.5 95 20-139 140-245 (347)
74 3a11_A Translation initiation 22.4 2.5E+02 0.0084 28.0 8.4 121 20-168 133-259 (338)
75 1t5o_A EIF2BD, translation ini 21.0 4.2E+02 0.014 26.4 9.8 93 20-138 138-241 (351)
76 4gx7_A Cytolysin and hemolysin 20.6 32 0.0011 30.3 1.1 55 370-433 40-105 (152)
No 1
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=100.00 E-value=3.4e-112 Score=897.26 Aligned_cols=425 Identities=32% Similarity=0.546 Sum_probs=404.6
Q ss_pred CCchhhhhhccCCCccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCC--CCCCCC-
Q psy2323 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPY--DNMTPE- 77 (509)
Q Consensus 1 ~~~~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~--~~~~~~- 77 (509)
|+|+++|++| + +|++||+++|+|||+|++||++|+|++|++||++|++++++++||++++++.|+. .++.++
T Consensus 16 m~~~~~y~~K---~--vsaeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~ 90 (455)
T 3qli_A 16 MDIRALYDEK---L--TTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYEL 90 (455)
T ss_dssp CCHHHHHHHH---B--CCHHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGG
T ss_pred cCHHHHHHhc---C--CCHHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhh
Confidence 7899999999 4 8999999999999999999999999999999999987678999999999888753 355554
Q ss_pred CCcEEEeccccCHHHHHHHHcCC-------ceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHH
Q psy2323 78 DDCVRRLSFFVSPYTRKYVNTGA-------AEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSV 150 (509)
Q Consensus 78 ~~~v~~~s~f~~~~~r~~i~~G~-------i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~ 150 (509)
.+++++.+||+++..|+++++|+ ++|+|.|||++|+++++ .+++|||+++|+++|++|||+||++.++++++
T Consensus 91 ~~~~~~~~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~-~~~iDVAli~vs~~D~~G~~s~g~s~~~~~~~ 169 (455)
T 3qli_A 91 NNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAE-EIGIDTFMHTVSPMDCHGYFSLGVGNDYSSRI 169 (455)
T ss_dssp TTTEEEEESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHT-TTCCSEEEEEECCCCTTSEEECTTBCBTHHHH
T ss_pred cCcEEEeeCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHh-cCCCCEEEEEEecCCCCceEEEccCCCchHHH
Confidence 78899999999999999999997 99999999999999986 67999999999999999999999999999999
Q ss_pred HhccCcEEEEecccCCCCCCC-ccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCC
Q psy2323 151 IRGSKRVIAQINDRMPRSLGE-ALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYEL 229 (509)
Q Consensus 151 a~aAk~VIvEVn~~vP~~~g~-~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~ 229 (509)
+++||+||+|||++||++.|+ ..||+++||+| ||++.|+
T Consensus 170 a~~Ak~VI~EVN~~vP~~~g~r~~I~~~~Vd~i----------------------------------------Ve~~~p~ 209 (455)
T 3qli_A 170 ARSARRFIVEVNRYMPRVQGEAAAIHISEVDAI----------------------------------------VENHVPL 209 (455)
T ss_dssp HHHSSEEEEEECTTSCCCCBTTCEEEGGGCSEE----------------------------------------EECCCCC
T ss_pred HhhcCEEEEEecCCCCCCCCCCCcCChHHcEEE----------------------------------------EECCCCC
Confidence 999999999999999999887 77887777666 9999887
Q ss_pred CCCCCCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcch
Q psy2323 230 FSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTP 309 (509)
Q Consensus 230 ~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d 309 (509)
.. .+..++++++++||+|+|+ +|+||+|||+|||+||+||++.|.+++|||+||||++|
T Consensus 210 ~~--------------------~~~~~~~~~~~~Ia~~va~-~i~dG~~lQ~GiG~ip~Av~~~L~~~~~lgi~tE~~~d 268 (455)
T 3qli_A 210 IE--------------------MPVRSAIPEYTSISHIIAD-LVPDGACLQMGVGALPNLVCGVLKDRNDLGIHTEVLNP 268 (455)
T ss_dssp CC--------------------CCCCCCCTHHHHHHHHHHH-TCCTTCEEEECSSHHHHHHHHHGGGCCSBEEBCSEECH
T ss_pred cc--------------------CCCCCCChHHHHHHHHHHH-HhcCCCeEEeccchHHHHHHHhcCcCCCeEEEcCCccc
Confidence 76 6777899999999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCcc
Q psy2323 310 GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVV 389 (509)
Q Consensus 310 ~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn 389 (509)
++++|+|+|++++++|++++|+++++|++|++++|+|+++||+|.|+|++|+|+|++|+++++++|||+|+|||++||||
T Consensus 269 ~~~dLi~aG~i~~~~K~~~~G~~v~~f~~gs~~ly~~~~~np~~~~~~~~y~N~p~~i~~~~~~i~in~a~evd~~G~v~ 348 (455)
T 3qli_A 269 GLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYEYLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACN 348 (455)
T ss_dssp HHHHHHHHTCBCCTTCSSSTTSEEESEECCCHHHHHHHTTCTTEEECBHHHHTCHHHHTTSTTEEEEEECSEEETTSCEE
T ss_pred chHHHHHCCCcccccccccCCceEEEeccchHHHHHHHhhCCCEEEeeccccCCHHHHhCCCCcEEeeeeEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCC
Q psy2323 390 SDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFA 468 (509)
Q Consensus 390 ~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG 468 (509)
+|++|++++||+|||+||++||++|+| ||+|||+|||+ |+| +|||||+|+ .+||++|++|||||||||||+|||
T Consensus 349 ~~~~~~~~~~G~GG~~Df~~gA~~s~g--gk~ii~~~s~~-k~G~is~Iv~~~~--~~vtt~~~~v~~vvTE~Gva~l~G 423 (455)
T 3qli_A 349 SEHMLGHQYSASGGQLDFVRGAYASKG--GRSIIATPSTA-AKGTVSRIIPRID--GPVTTPRIDTHYIVTEFGAVNLKG 423 (455)
T ss_dssp CCCSTTCCCGGGSSHHHHHHHHHHSTT--CEEEEECCSEE-TTTTEESEESCCS--SSCSBCTTTCCEEEETTEEEECTT
T ss_pred eeccCCeeecCcChhHHHHHHHhhcCC--CcEEEEEeCcc-CCCCCCeEeccCC--CCcccCcccccEEEeccEEEECCC
Confidence 999999999999999999999999999 99999999999 999 899999998 479999999999999999999999
Q ss_pred CCHHHHHHHhhccCCCccHHHHHHHHHHH
Q psy2323 469 KSTRQRAHALIRIAHPQHREALEREAYEI 497 (509)
Q Consensus 469 ~~l~ErA~~li~iAhp~fr~~L~~~a~~~ 497 (509)
|+++|||++||+||||||||+|.++|+++
T Consensus 424 ~s~~eRa~~lI~iAHPdfR~~L~~~A~~~ 452 (455)
T 3qli_A 424 LSSTERALRIIELAHPDFRDELTQAAKKM 452 (455)
T ss_dssp CCHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccCcchHHHHHHHHHHc
Confidence 99999999999999999999999999986
No 2
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=100.00 E-value=6.3e-111 Score=889.66 Aligned_cols=428 Identities=39% Similarity=0.659 Sum_probs=381.2
Q ss_pred CCchhhhhhccCCCccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC-CC
Q psy2323 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE-DD 79 (509)
Q Consensus 1 ~~~~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~-~~ 79 (509)
|+|++.|++| + +|++||+++|+|||+|++||++|+|..|++||++|++ ++++|+++++++.++.++..+. .+
T Consensus 5 m~~~~~y~~K---~--~saeEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~--~l~~v~l~~~~~~~~~~~~~~~~~~ 77 (434)
T 3eh7_A 5 KDVLAEYASR---I--VSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQAD--LFQNVEIYHMLCLGEGKYMAPEMAP 77 (434)
T ss_dssp CCTTGGGGGG---E--ECHHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTT--TC--CEEECCBCTTCC---------
T ss_pred HHHHHHHHhc---C--CcHHHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHh--hcCCeEEEEeccCCchhhcChhhhC
Confidence 6899999999 4 8999999999999999999999999999999999987 7899999999888876566555 56
Q ss_pred cEEEeccccCHHHHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEE
Q psy2323 80 CVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIA 159 (509)
Q Consensus 80 ~v~~~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIv 159 (509)
++++.+||+++.+|+++++|+++|+|.|||+++++++++.+++|||+++++++|++|||++|.+.+++++++++|++||+
T Consensus 78 ~~~~~~~~~~~~~r~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~~~~~~~~A~~VI~ 157 (434)
T 3eh7_A 78 HFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIG 157 (434)
T ss_dssp --------------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTBCTTHHHHHHHCSEEEE
T ss_pred eEEEecCcCCHHHHHHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEecCccchHHHHHHhCCeEEE
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccc
Q psy2323 160 QINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239 (509)
Q Consensus 160 EVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~ 239 (509)
|||++||+.+|+..||++.||+| ||++.|+.+
T Consensus 158 eVn~~vP~~~g~~~I~~~~VD~I----------------------------------------Ve~~~p~~~-------- 189 (434)
T 3eh7_A 158 EINRQMPYVHGDNLIHISKLDYI----------------------------------------VMADYPIYS-------- 189 (434)
T ss_dssp EEETTSCCCEESCEEEGGGCSEE----------------------------------------EEECCCCCC--------
T ss_pred EecCCCCCCCCCCeeeeEeeEEE----------------------------------------EECCCCccc--------
Confidence 99999999888766776555544 898887665
Q ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcC
Q psy2323 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGV 319 (509)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~ 319 (509)
.+..++++++++||+|+|+ +|+||++||+|||+||+||+..|.++++||+||||++|++++|+|+|+
T Consensus 190 ------------~~~~~~~~~~~~Ia~~~a~-~i~dG~~lq~GiG~ip~AV~~~L~~~~~lgi~tE~~~d~~~~lie~G~ 256 (434)
T 3eh7_A 190 ------------LAKPKIGEVEEAIGRNCAE-LIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGV 256 (434)
T ss_dssp ------------CCCCCCCHHHHHHHHHHHH-TCCTTCEEECCSSHHHHHHHHTTTTCCSBEEECSEECHHHHHHHHTTS
T ss_pred ------------CCCCCCChHHHHHHHHHHH-hccCCCEEEeccchHHHHHHHHhhhcCCceEEccCcchhHHHHHHCCC
Confidence 5667789999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCcccc
Q psy2323 320 INNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYS 399 (509)
Q Consensus 320 i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~s 399 (509)
+++.+|++++|+++++|+||++++|+|+++||.+.|+|++|+|||++|+++++++|||||+|||++||||+|++|+++++
T Consensus 257 i~~~~k~~~~g~~~~~f~~G~~~~y~~~~~np~~~~~~~~~~n~p~~i~~~d~~i~in~a~evD~~G~vn~~~~g~~~~~ 336 (434)
T 3eh7_A 257 ITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFS 336 (434)
T ss_dssp BCCTTCSSSTTCEEESEECCCHHHHHHHTTCTTEEECCHHHHTCHHHHTTSSSEEEEECCSEEETTCCEECCSTTSCCSB
T ss_pred ccceeecccCCceeEeecchHHHHHHHHHhCCCeEEeccccccCHHHHcCCCCcEEEehhheeccCCCeeeeccCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHHh
Q psy2323 400 GFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHAL 478 (509)
Q Consensus 400 G~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~l 478 (509)
|+|||+||++||++|+| ||||||+|||+ |+| +|||||+|++|+.|||++++|++||||||||+|||++++|||++|
T Consensus 337 G~GG~~Df~~ga~~s~g--gk~ii~~~st~-~~G~is~iv~~~~~g~~v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~l 413 (434)
T 3eh7_A 337 GTGGQVDYVRGAAWSKN--GKSIMAIPSTA-KNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEAL 413 (434)
T ss_dssp CCCTHHHHHHHHHHSTT--CEEEEECCSEE-TTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEECTTCCHHHHHHHH
T ss_pred ccCchHHHhccccccCC--CceEEEEeeec-CCCCCCeEeeCCCCCCCceeCccceeEEEcccEEEECCCCCHHHHHHHH
Confidence 99999999999999999 99999999999 889 899999999888899999999999999999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHhc
Q psy2323 479 IRIAHPQHREALEREAYEILK 499 (509)
Q Consensus 479 i~iAhp~fr~~L~~~a~~~~~ 499 (509)
|+||||+|||+|.++|++.+|
T Consensus 414 i~iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 414 IAIAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp HTTSCHHHHHHHHHHHHHHHC
T ss_pred hcCCCCCcHHHHHHHHHHhhC
Confidence 999999999999999999875
No 3
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=100.00 E-value=8.7e-110 Score=881.09 Aligned_cols=433 Identities=41% Similarity=0.683 Sum_probs=413.2
Q ss_pred CCchhhhhhccCCCccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC-CC
Q psy2323 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE-DD 79 (509)
Q Consensus 1 ~~~~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~-~~ 79 (509)
|+|++.|++| + +|+|||+++|||||||++|+++|+|..|++||+++.. .++++++++++++++.+++++. .+
T Consensus 1 m~~~~~y~~K---l--~saeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~--~l~~v~l~~~~s~~~~~~~~~~~~~ 73 (448)
T 3gk7_A 1 MDWKKIYEDR---T--CTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNVTVSHMVTLGKGEYSKPEYKE 73 (448)
T ss_dssp CHHHHHHHHT---B--CCHHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGG--GCSSEEEEESSCSSCCGGGSGGGTT
T ss_pred CChHHHHHhc---C--CCHHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHH--hhcCeEEEEeeccCCccccChHHhC
Confidence 8999999999 4 8999999999999999999999999999999999987 6899999999998876666665 67
Q ss_pred cEEEeccccCHHHHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEE
Q psy2323 80 CVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIA 159 (509)
Q Consensus 80 ~v~~~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIv 159 (509)
++++.+||+++.+|+++++|+++|+|.|||++++++++|.+++|||+++++++|++|||++|++.+++++++++||+||+
T Consensus 74 ~~~~~~~~~~~~~r~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~~~~~a~~A~~VI~ 153 (448)
T 3gk7_A 74 NFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLA 153 (448)
T ss_dssp TEEEEESSCCTTTHHHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSBCBTHHHHHHHCSEEEE
T ss_pred cEEEecCcCCHHHHhHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEecCCcChHHHHHHhCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccc
Q psy2323 160 QINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239 (509)
Q Consensus 160 EVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~ 239 (509)
|||++||++.|+..||++.||+| ||++.|+..
T Consensus 154 eVn~~vP~~~g~~~I~~~~VD~I----------------------------------------Ve~d~p~~~-------- 185 (448)
T 3gk7_A 154 EVNDQVPVVYGDTFVHVSEIDKF----------------------------------------VETSHPLPE-------- 185 (448)
T ss_dssp EEETTSCCCSBSCEEEGGGCSEE----------------------------------------EEECCCCCC--------
T ss_pred EeeccCCCCCCCCcccccCeEEE----------------------------------------EECCCCCcC--------
Confidence 99999999988777777666655 899888776
Q ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcC
Q psy2323 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGV 319 (509)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~ 319 (509)
.+..++++++++||+|+|+ +|+||++||+|||+||+||+++|.++++||+||||++|++++|+|+|+
T Consensus 186 ------------~~~~~~~~~~~~IA~~~a~-~i~dG~~lqlGIG~ip~aV~~~L~~~~~l~~~tE~~~d~~~~l~e~G~ 252 (448)
T 3gk7_A 186 ------------IGLPKIGEVEAAIGKHCAS-LIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGV 252 (448)
T ss_dssp ------------CCCCCCCHHHHHHHHHHHT-TCCTTCEEEBCSSHHHHHHHHTCTTCCSBEEEEEEECHHHHHHHHTTS
T ss_pred ------------CCCCCCCcHHHHHHHHHHH-HccCCCEEEeccCcHHHHHHHHhhhcCCeeEEcCCChhhhhhhhhCCc
Confidence 6677899999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCcccc
Q psy2323 320 INNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYS 399 (509)
Q Consensus 320 i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~s 399 (509)
+++.+|.+++|+.+++|++|++++|+|+++||+|.|+|++|+|+|++|+++++++|||||+|||++||||+|++|+++++
T Consensus 253 v~~~~k~i~~g~~~~~f~~G~~~~y~~~~~~~~~~~~~~~~~N~p~~i~~l~~~iain~alevD~~G~vns~~~g~~~~~ 332 (448)
T 3gk7_A 253 IDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFS 332 (448)
T ss_dssp BCCTTCSSSTTSEEEEEECSCHHHHHHHTTCTTEEECBHHHHTCHHHHTTSTTEEEEEECSEEETTCCEECSEETTEECS
T ss_pred ccCchhcccCCccEEEEChhHHHHHHHhcCCCCEEEECCcccCCHHHHhccCCcEEEehheeeccCCCeeeeccCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHhcccccCCCCCCcEEEEeecccCCCC----ccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHH
Q psy2323 400 GFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG----LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRA 475 (509)
Q Consensus 400 G~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G----~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA 475 (509)
|+|||+||++||++|+||+||+|||+|||+ |+| +|||||+|++|+.|||+|++||+||||||||+|||++++|||
T Consensus 333 G~GG~~Df~~gA~~s~g~~~k~Ii~~~st~-k~G~g~~is~IV~~~~~g~~v~t~~~~v~~iVTE~Gva~L~G~~~~era 411 (448)
T 3gk7_A 333 GVGGQVDFVRGASMSIDGKGKAIIAMPSVA-KKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRA 411 (448)
T ss_dssp CCTTHHHHHHHHHTCTTSCCEEEEECCSEE-ECTTSCEEESEESSCCTTCCCSBCTTTCCEEEETTEEEECTTCCHHHHH
T ss_pred ccCchHHHhcchhhccCCCCcEEEEEeeee-cCCCCCCCCeEeecCCCCCCceeCcCceEEEEeceEEEEccCCCHHHHH
Confidence 999999999999999999999999999999 777 699999999888899999999999999999999999999999
Q ss_pred HHhhccCCCccHHHHHHHHHHHhcCCC
Q psy2323 476 HALIRIAHPQHREALEREAYEILKVMP 502 (509)
Q Consensus 476 ~~li~iAhp~fr~~L~~~a~~~~~~~~ 502 (509)
++||+||||+|||+|.++|++++++-=
T Consensus 412 ~~li~iAhp~fr~~L~~~~~~~~~~~~ 438 (448)
T 3gk7_A 412 RALINIAHPDFKDELKAEFEKRFNAAF 438 (448)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHSSCS
T ss_pred HHHHhcCCCcCHHHHHHHHHHhhccce
Confidence 999999999999999999999998643
No 4
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=100.00 E-value=5.4e-108 Score=870.01 Aligned_cols=419 Identities=40% Similarity=0.671 Sum_probs=397.3
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC-CCcEEEeccccCHHHH
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTR 93 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~-~~~v~~~s~f~~~~~r 93 (509)
|++|++||+++|+|||||++|||+|.|.+|++||++|++ .++|||++++.+.++.+++.+. .+++++.+||.++.+|
T Consensus 5 K~~saeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr 82 (436)
T 2oas_A 5 VCQSALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTR 82 (436)
T ss_dssp ECSSHHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTH
T ss_pred cCccHHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHH
Confidence 569999999999999999999999999999999999986 5799999998888875555433 6788888999999999
Q ss_pred HHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEEEecccCCCCCCCcc
Q psy2323 94 KYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEAL 173 (509)
Q Consensus 94 ~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIvEVn~~vP~~~g~~~ 173 (509)
+++++|+++|+|.+||+++++++++.+++|||||+++++|++|||+|+.+.+++++++++|++||+|||++||+..|+..
T Consensus 83 ~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~~s~~~~~~~a~aA~~VIveVn~~vP~~~g~~~ 162 (436)
T 2oas_A 83 PLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISVEATLAACQVAGKIIAHINPQMPRTHGDGF 162 (436)
T ss_dssp HHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBCTTHHHHHHHCSEEEEEECTTSCCCEESCE
T ss_pred HHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEecCcCcHHHHHHhcCeEEEEEcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877656
Q ss_pred ccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccccCCCCCCcccCCCC
Q psy2323 174 VHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPA 253 (509)
Q Consensus 174 i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~~~p~~~~~~~~~~~ 253 (509)
||++.||+| ||++.|+.+ .+
T Consensus 163 I~~~~VD~V----------------------------------------Ve~d~p~~~--------------------~~ 182 (436)
T 2oas_A 163 IHIDRFAAV----------------------------------------YEQSASLPI--------------------HS 182 (436)
T ss_dssp EEGGGCSEE----------------------------------------EECCCCCCC--------------------CC
T ss_pred CChHHeEEE----------------------------------------EECCCCccc--------------------CC
Confidence 776666655 898888665 56
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCcee
Q psy2323 254 TEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQIT 333 (509)
Q Consensus 254 ~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~ 333 (509)
..++++++++||+|+|+ +|+||++||+|||+||+||+++|.++++||+||||++|++++|+|+|++++..|++++|+++
T Consensus 183 ~~~~~~~~~~Ia~~~a~-~i~dg~~lqlGiG~ip~av~~~l~~~~~l~i~te~~~d~~~~l~~~G~i~~~~k~~~~g~~~ 261 (436)
T 2oas_A 183 FATGDAVSLAIGQHVAE-LVRDGDCLQMGIGAIPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLV 261 (436)
T ss_dssp CCCCCHHHHHHHHHHHH-HCCTTCEEECCSSHHHHHHHHTCTTCCSBEEBCSEECHHHHHHHHTTSBCCTTCSSSTTSEE
T ss_pred CCCCChHHHHHHHHHHH-hcCCCCEEeecCcHHHHHHHHHHhhcCceeEEeccccHhHHHHHHCCCcccccccccCCcce
Confidence 67789999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhccccc
Q psy2323 334 ATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALT 413 (509)
Q Consensus 334 ~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~ 413 (509)
++|+||++++|+|+++||++.|+|++|+|||++|+++++++|||||+|||++||||+|++|+++++|+|||+||++||++
T Consensus 262 ~~f~~Gs~~~y~~~~~n~~~~~~~~~~~n~~~~i~~~~~~~~i~~a~evD~~G~vn~~~~g~~~~~G~GG~~D~~~gA~~ 341 (436)
T 2oas_A 262 TGFALGSQKLYDYVDDNPAVIFMDIEQVNDTSIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQMDFIRGAGL 341 (436)
T ss_dssp ESEECSCHHHHHHHTTCTTEEECCHHHHTCHHHHTTSTTEEEEECCSEEETTCCEECSEETTEECSCCTTHHHHHHHHHH
T ss_pred eeeccchHHHHHHHhcCCcEEeecccccCCHHHHhCCCCcEEEeccceecCCCCeeeeecCCeeecccccHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHHhhccCCCccHHHHHH
Q psy2323 414 GLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALER 492 (509)
Q Consensus 414 s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~li~iAhp~fr~~L~~ 492 (509)
|+| ||||||++||+ |+| +|||||+|++|++|||+|++||+||||||||+|||++++|||++||+||||+|||+|.+
T Consensus 342 ~~g--gk~ii~~~~t~-k~G~iskiv~~~~~g~~v~t~~~~v~~vvTE~Gva~l~g~~~~era~~li~iAhp~~r~~L~~ 418 (436)
T 2oas_A 342 SEG--GRSVIALPSTA-AGGRISRIASVLSPGAGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSR 418 (436)
T ss_dssp STT--CEEEEECCSEE-TTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEECTTCCHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cCC--CcEEEEEeeec-CCCCCCEEeeccCCCCCcccCcccCCEEECCCEEEECCCCCHHHHHHHhhcCCCcchHHHHHH
Confidence 999 99999999999 889 89999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy2323 493 EAYEILK 499 (509)
Q Consensus 493 ~a~~~~~ 499 (509)
+|+++.+
T Consensus 419 ~a~~~~~ 425 (436)
T 2oas_A 419 DAFEVWG 425 (436)
T ss_dssp HHHHTSC
T ss_pred HHHHhcc
Confidence 9999875
No 5
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=100.00 E-value=4.7e-103 Score=834.35 Aligned_cols=429 Identities=35% Similarity=0.613 Sum_probs=362.8
Q ss_pred CCchhhhhhccCCCccCCHHHHh-hcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC-C
Q psy2323 1 MSAKKHYSTTTSSMELISKEQAV-QFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE-D 78 (509)
Q Consensus 1 ~~~~~~y~~~~~~~Kv~SaeEA~-~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~-~ 78 (509)
|+|+++|++| + +|++||+ ++|+|||+|++|||+|+|.+|++||+++++ +++|||++++++.++.+++.+. .
T Consensus 1 ~~~~~~~~~K---~--~sa~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~--~~~dLtli~~~~~~~~~~~~~~l~ 73 (439)
T 3d3u_A 1 MQWQELYRQR---V--CSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQRE--KLENITVFHMLYFGDAPHLAPEMR 73 (439)
T ss_dssp -CCHHHHHHH---B--CCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTT--TCCSEEEECSCBSSCCTTSSGGGT
T ss_pred CChHHHhhcC---C--CcHHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhC--CCCCEEEEEecCCCcchhccHHhC
Confidence 8999999998 4 8999999 999999999999999999999999999986 6899999999887765566544 6
Q ss_pred CcEEEeccccCHHHHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEE
Q psy2323 79 DCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVI 158 (509)
Q Consensus 79 ~~v~~~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VI 158 (509)
+++++.+||+++.+|+++++|+++|+|.+||+++++++++.+++|||||+++++|++|||+||.+.+++++++++|++||
T Consensus 74 ~~i~~~~~~~g~~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~g~s~~~~~~~~~aA~~VI 153 (439)
T 3d3u_A 74 SHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVV 153 (439)
T ss_dssp TTEEEEC--------------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTTBCBTHHHHHHHCSEEE
T ss_pred CcEEEEECCCChHHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEEeccccchHHHHhhCCeEE
Confidence 78888899999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred EEecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCcc
Q psy2323 159 AQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWL 238 (509)
Q Consensus 159 vEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~ 238 (509)
+|||++||+++|+..||++.||+| ||++.|+..
T Consensus 154 veVn~~vp~~~g~~~I~~~~VD~V----------------------------------------Ve~d~p~~~------- 186 (439)
T 3d3u_A 154 AEVNKQMPFIGGENLIHISKLTHI----------------------------------------IEVDEPIAE------- 186 (439)
T ss_dssp EEEESSSCCCEESCEEEGGGCSEE----------------------------------------EEECCCCCC-------
T ss_pred EEECCCCCCCCCCCcCChhhcEEE----------------------------------------EECCCCccc-------
Confidence 999999998877666666666655 888877655
Q ss_pred ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhc
Q psy2323 239 LFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSG 318 (509)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G 318 (509)
.+..++++++++||+|+|+ +|+||++||+|||++|+||+++|.++++|++||||++|++++|+|+|
T Consensus 187 -------------~~~~~~~~~~~~Ia~~~a~-~i~dg~~lqlGiG~ip~av~~~l~~~~~l~i~te~~~~~~~~l~~~G 252 (439)
T 3d3u_A 187 -------------VLPPAGSDLELRIGQNCAS-LIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKG 252 (439)
T ss_dssp -------------CCC--CCHHHHHHHHHHHT-TCCTTCEEEECSSHHHHHHHHTTTTCCSBEEECSCBCHHHHHHHHHT
T ss_pred -------------CCCCCCChHHHHHHHHHHH-hcCCCCEEEeccchHHHHHHHHHhhCCCceEEEEEecchhHhhccCC
Confidence 4556789999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccc
Q psy2323 319 VINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIY 398 (509)
Q Consensus 319 ~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~ 398 (509)
++++.+|.+++|+.+++|++|++++|+|+++|++|.|++++++|||++|+++++|+|||||+|||++||||+|++|++++
T Consensus 253 ~~~~~~~~~~~g~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~n~p~~i~~~~~dv~i~ga~evD~~G~vn~~~~g~~~~ 332 (439)
T 3d3u_A 253 IINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQF 332 (439)
T ss_dssp CBCCSSCSSSTTSEEESBBCCCHHHHHHHTTCTTEEECBHHHHTCHHHHHHSSSEEEEECCSCEETTSCC----------
T ss_pred cccccccccCCCceeEEEccCchHHHHHhcCCCCEEEEeccccCCHHHhhccCCcEEEehheEecCCCCEeeeccCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHH
Q psy2323 399 SGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHA 477 (509)
Q Consensus 399 sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~ 477 (509)
+|+|||+||++||++|+| ||+|||++||+ |+| +|||||+|++|++||++++++++||||||||+|+|++++|||++
T Consensus 333 ~G~GG~~D~~~~A~~s~~--gk~ii~~~~t~-k~G~~s~iv~~~~~g~~v~~~~~~v~~vVTE~gva~l~g~~l~e~a~~ 409 (439)
T 3d3u_A 333 SGSGGQVDFLRGAKRSKG--GISIMAFPSTA-KKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEA 409 (439)
T ss_dssp ----CHHHHHHHHTTSTT--CEEEEECCSEE-TTTTEESEESSCC------CCSTTCSEEEETTEEEECTTCCHHHHHHH
T ss_pred cccccHHHHhhcccccCC--CeEEEEEeeec-CCCCCCeEeECccCCCCceeCCCcceEEECCCEEEEeCCCCHHHHHHH
Confidence 999999999999999999 99999999999 899 79999999988899999999999999999999999999999999
Q ss_pred hhccCCCccHHHHHHHHHHHhcC
Q psy2323 478 LIRIAHPQHREALEREAYEILKV 500 (509)
Q Consensus 478 li~iAhp~fr~~L~~~a~~~~~~ 500 (509)
||+||||+|||+|.++|+++.++
T Consensus 410 lI~iAhp~fr~~L~~~a~~~~~~ 432 (439)
T 3d3u_A 410 LTAIAHPDFRPALEEEIRRRFEL 432 (439)
T ss_dssp HHHHSCTTHHHHHHHHHHTTC--
T ss_pred HHhhcCCCCHHHHHHHHHHcCch
Confidence 99999999999999999987654
No 6
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=100.00 E-value=2.4e-99 Score=813.31 Aligned_cols=430 Identities=24% Similarity=0.322 Sum_probs=390.0
Q ss_pred hhhhccCCCccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcc--eEEEEeecCCCC---CCCCCCC
Q psy2323 6 HYSTTTSSMELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQG--VTVLDVFSLYPY---DNMTPED 78 (509)
Q Consensus 6 ~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kd--Ltl~~~~~~g~~---~~~~~~~ 78 (509)
.|++| ++|++||+++|+|||||++||| +|.|.+|++||++|.. . ++ ||++++++.|+. .++. .
T Consensus 10 ~~~~K-----v~saeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~--~-~dl~Ltl~~~~~~g~~~~~~l~~--~ 79 (497)
T 2g39_A 10 SLLDK-----VMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAK--E-RPLRISLMTGASLGNDLDKQLTE--A 79 (497)
T ss_dssp GGGGG-----BCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHH--H-SCCCEEEECSSCCCTTHHHHHHH--T
T ss_pred HHhcc-----cCcHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhh--c-CCceEEEEecccccccchHHHhc--C
Confidence 47777 3899999999999999999998 6999999999999976 3 55 888887666642 1111 3
Q ss_pred CcEEE-eccccCHHHHHHHHcCCceeecCCCChHHHHHHccCC-CCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCc
Q psy2323 79 DCVRR-LSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYF-SPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKR 156 (509)
Q Consensus 79 ~~v~~-~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~-~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~ 156 (509)
+.+++ .+||.++.+|+++++|+++|+|.+||+++++++++.+ ++|||||+++++|++|||+|+.+.+++++++++|++
T Consensus 80 g~v~~~~~~~~~~~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~~~~a~aA~~ 159 (497)
T 2g39_A 80 GVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNSASFAIFAKQ 159 (497)
T ss_dssp TCEEEEESCCCCHHHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTHHHHHHHSSE
T ss_pred CceEEEEeeCCCHHHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcccHHHHHHhCCe
Confidence 56655 4789999999999999999999999999999999888 699999999999999999999999999999999999
Q ss_pred EEEEecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeee--cceeEEEEcCCCCCCCCC
Q psy2323 157 VIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHV--SEIDYGVEVSYELFSPGK 234 (509)
Q Consensus 157 VIvEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~--~~vd~vVe~~~p~~~p~~ 234 (509)
||+|||++||+.++. |||++....+|.+.++|+++..||||.+++++ ++||||||++.|+..
T Consensus 160 VIvEVn~~vP~~~~g-------------~hd~~~~~~~P~~~~ip~~~~~~r~G~~~i~i~~~~Vd~IVe~~~p~~~--- 223 (497)
T 2g39_A 160 VIVEINLAHSTNLEG-------------LHDIYIPTYRPTRTPIPLTRVDDRIGSTAIPIPPEKIVAIVINDQPDSP--- 223 (497)
T ss_dssp EEEEEETTSCGGGTT-------------SBCBCCCCCTTSCCCCCCCSTTCCCSBSSBCCCGGGEEEEEEECCCCCC---
T ss_pred EEEEEcCCCCccccc-------------ccccccccCCcccccccccccccccCCccccCChhHEEEEEEcCCCccc---
Confidence 999999999988542 45665556678888899999999999999655 799999999988765
Q ss_pred CCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHh---hcCCC------CeeccccCchHHHHHHhhhcc--CCeeEE
Q psy2323 235 GGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDE---LLEDE------ATLQIGLGKIPEAILSNIKHQ--INLGVH 303 (509)
Q Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~---~i~dg------~~lqlGiG~ip~aV~~~L~~~--~~lgih 303 (509)
.+..++++++++||+|+|+| +++|| ++||+|||+||+||+++|.++ ++|++|
T Consensus 224 -----------------~~~~~~~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~~~~~l~~~ 286 (497)
T 2g39_A 224 -----------------STVLPPDGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIESPFENLTMY 286 (497)
T ss_dssp -----------------CCCCCCCHHHHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSSSCCSEEEE
T ss_pred -----------------cCCCCCChHHHHHHHHHHHHHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhcccccceEE
Confidence 56677899999999999994 35677 999999999999999999998 999999
Q ss_pred eCCcchhHHHHHHhcCcccccccccCCceeeeccCC---ChhhHHHhhc-CCcEEEeeccccCcHHHHhccCccEEeece
Q psy2323 304 TELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLG---DKPLYDFVHN-NELVQMKRGTYSNDPAIIRQNHRMTAINTC 379 (509)
Q Consensus 304 tE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G---~~~ly~~i~~-n~~~~~~~~~~~n~p~~i~~~~~~vain~a 379 (509)
|||++|++++|+|+|++++. ++++|++| ++++|+|+++ ||+|.|+|++|+|||++|+++ +++|||||
T Consensus 287 se~~~d~~~~li~aG~~~~~--------~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~~~N~p~~i~~~-~~iain~a 357 (497)
T 2g39_A 287 SEVLQDSTFDLIDAGKLRFA--------SGSSITLSPRRNADVFGNLERYKDKLVLRPQEISNHPEVVRRL-GIIGINTA 357 (497)
T ss_dssp CSEECHHHHHHHHTTCEEEE--------EESEECCCHHHHHHHHHSGGGTGGGEEECBHHHHTCHHHHHHH-TCEEEEEC
T ss_pred eeccchhHHHHHHCCCCcce--------eeeeeccccccHHHHHHhHHhcCCceeeecccccCCHHHHhCC-CcEEEehh
Confidence 99999999999999999986 47889985 6899999998 799999999999999999999 58999999
Q ss_pred eeeecCCCccccCC-CCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEE
Q psy2323 380 LEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYV 457 (509)
Q Consensus 380 ~EvDl~G~vn~~~~-g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~v 457 (509)
+|||++||||+|++ |+++++|+|||+||++||++| |||+|||+ |+| +|||||+|+ +|||+++++|+|
T Consensus 358 ~evD~~G~vn~~~~~g~~~~~G~GG~~Df~~gA~~s-------ii~~~st~-k~G~iskIv~~~~---~v~t~~~~v~~v 426 (497)
T 2g39_A 358 LEFDIYGNVNSTHVGGTKMMNGIGGSGDFARNAHLA-------IFVTKSIA-KGGNISSVVPMVS---HVDHTEHDVDIL 426 (497)
T ss_dssp SEEETTSCEESSEETTTEECSCCTTHHHHHHHCSEE-------EEECCSEE-GGGTEESEESSCS---SCSBCGGGCCEE
T ss_pred heccCCCceeeeeccCCcEEeccCcchhhhccCCEE-------EEEEcccc-CCCCcCeEeeCCC---CeecCCCceeEE
Confidence 99999999999995 999999999999999999998 99999999 888 899999998 899999999999
Q ss_pred EccceEEEcCCCCHHHHHHHhh-ccCCCccHHHHHHHHHHHh
Q psy2323 458 VTEYGCADLFAKSTRQRAHALI-RIAHPQHREALEREAYEIL 498 (509)
Q Consensus 458 VTE~Gva~LrG~~l~ErA~~li-~iAhp~fr~~L~~~a~~~~ 498 (509)
|||||||||||++++|||++|| +||||+|||+|.++++++.
T Consensus 427 VTE~gva~l~G~~~~era~~lI~~iAhp~fr~~L~~~~~~~~ 468 (497)
T 2g39_A 427 VTEQGLADLRGLAPRERARVIIENCVHPSYQAPLLDYFEAAC 468 (497)
T ss_dssp EETTEEEECTTCCHHHHHHHHHHHTSCTTTHHHHHHHHHHHH
T ss_pred ECCCEEEEccCCCHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 9999999999999999999999 6999999999999999884
No 7
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=100.00 E-value=5.1e-98 Score=804.57 Aligned_cols=428 Identities=26% Similarity=0.383 Sum_probs=388.8
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhc----CCCcceEEEEeecCCCCCCCCCC---CCcEEE-e
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKS----KNIQGVTVLDVFSLYPYDNMTPE---DDCVRR-L 84 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~----~~~kdLtl~~~~~~g~~~~~~~~---~~~v~~-~ 84 (509)
|++|++||+++|+|||||++||| +|.|.+|++||++|+.+ ++..+||++++.+.++. .++. .+.+++ .
T Consensus 4 Kv~SaeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~--~~~~l~~~g~v~~~~ 81 (506)
T 2nvv_A 4 RFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGAR--LDGVLAQADAVKFRT 81 (506)
T ss_dssp CBCCHHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTT--THHHHHHTTCEEEEE
T ss_pred ccCcHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcc--hhHHhccCCceEEEe
Confidence 46999999999999999999998 79999999999999763 23458999998877753 1111 366665 5
Q ss_pred ccccCHHHHHHHHcCCceeecCCCChHHHHHHccCC-CCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEEEecc
Q psy2323 85 SFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYF-SPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 85 s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~-~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIvEVn~ 163 (509)
+||.++.+|+++++|+++|+|.+||+++++++++.+ ++|||||+++++|++|||+|+.+.+++++++++|++||+|||+
T Consensus 82 ~~~~~~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~~~~a~aA~~VIveVn~ 161 (506)
T 2nvv_A 82 PYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELND 161 (506)
T ss_dssp SCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCBTHHHHHHHCSEEEEEEET
T ss_pred eeCCCHHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcCcHHHHHHhCCcEEEEECC
Confidence 689999999999999999999999999999999989 6999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeee--cceeEEEEcCCCCCCCCCCCccccC
Q psy2323 164 RMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHV--SEIDYGVEVSYELFSPGKGGWLLFS 241 (509)
Q Consensus 164 ~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~--~~vd~vVe~~~p~~~p~~~~~~~~~ 241 (509)
+||+.++. |||++....+|.+.++|+++..||||.|++++ ++||||||++.|+..
T Consensus 162 ~vP~~~~g-------------~~d~~~~~~~P~~~~Ip~~~~~~r~G~~~i~i~~~~Vd~VVe~~~p~~~---------- 218 (506)
T 2nvv_A 162 KHPKEIMG-------------MHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDE---------- 218 (506)
T ss_dssp TSCGGGTT-------------SBCBCCCCCTTSCCCCCCSSTTCCCSBSSEECCGGGEEEEEEECCCCCC----------
T ss_pred CCCccccc-------------ccccccccCCcccccccccccccccCCccccCChHHEEEEEEcCCCccc----------
Confidence 99987653 46666667788888999999999999999655 799999999988765
Q ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHh---hcCCC------CeeccccCchHHHHHHhhhccC---CeeEEeCCcch
Q psy2323 242 PGKGSWLLFSPATEEVTEIDSAIANHICDE---LLEDE------ATLQIGLGKIPEAILSNIKHQI---NLGVHTELLTP 309 (509)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~---~i~dg------~~lqlGiG~ip~aV~~~L~~~~---~lgihtE~~~d 309 (509)
.+..++++++++||+|+|+| +++|| ++||+|||+||+||+.+|.+++ +|++||||++|
T Consensus 219 ----------~~~~~~~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~~~~~~l~i~te~~~d 288 (506)
T 2nvv_A 219 ----------SDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQD 288 (506)
T ss_dssp ----------CCCCCCCHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHCTTSCCEEEECSEECH
T ss_pred ----------cCCCCCChHHHHHHHHHHHHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhcCCcccceEEeccccc
Confidence 56677899999999999994 24566 9999999999999999999875 99999999999
Q ss_pred hHHHHHHhcCcccccccccCCceeeeccCC---ChhhHHHhhc-CCcEEEeeccccCcHHHHhccCccEEeeceeeeecC
Q psy2323 310 GVIKLFNSGVINNSKKSIDRGQITATLLLG---DKPLYDFVHN-NELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDIT 385 (509)
Q Consensus 310 ~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G---~~~ly~~i~~-n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~ 385 (509)
++++|+|+|++++. ++++|++| ++++|+|+++ ||+|.|+|++|+|+|++|+++ +++|||||+|||++
T Consensus 289 ~~~~lieaG~i~~~--------~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~~~N~p~~i~~~-~~iain~alevD~~ 359 (506)
T 2nvv_A 289 AVIALMKKGRIKFA--------SGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRL-GVITINTALEADIF 359 (506)
T ss_dssp HHHHHHHTTSEEEE--------EESEECCCHHHHHHHHTCHHHHTTTEEECBHHHHTCHHHHHHH-TCEEEEECSEEETT
T ss_pred chHHHHHCCCCCCe--------eeeEeecccccHHHHHhhHHhcCCceeeecccccCCHHHHhCC-CcEEEehhheecCC
Confidence 99999999999986 47889884 6899999988 799999999999999999999 58999999999999
Q ss_pred CCccccCC-CCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceE
Q psy2323 386 GQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGC 463 (509)
Q Consensus 386 G~vn~~~~-g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gv 463 (509)
||||+|++ |+++++|+|||+||++||++| |||+|||+ |+| +|||||+|+ +|||++++||+|||||||
T Consensus 360 G~vn~~~~~g~~~~~G~GG~~Df~~gA~~s-------i~~~~st~-k~G~is~iV~~~~---~v~~~~~~v~~vVTE~Gv 428 (506)
T 2nvv_A 360 GNINSTHVSGTRMMNGIGGSGDFTRNSYVS-------IFTTPSVM-KDGKISSFVPMVA---HHDHSEHSVKVIISEWGV 428 (506)
T ss_dssp SCEECSEETTTEECSCCTTHHHHHHHSSSE-------EEECCSEE-GGGTEESEESSCS---SCSBCTTTCCEEEETTEE
T ss_pred CceeeeeccCCceEcccCcHHHHhhccCeE-------EEEecccc-CCCCCCeEEeCCC---CcccCCCceeEEECCCEE
Confidence 99999995 999999999999999999988 99999999 888 899999998 899999999999999999
Q ss_pred EEcCCCCHHHHHHHhh-ccCCCccHHHHHHHHHHH
Q psy2323 464 ADLFAKSTRQRAHALI-RIAHPQHREALEREAYEI 497 (509)
Q Consensus 464 a~LrG~~l~ErA~~li-~iAhp~fr~~L~~~a~~~ 497 (509)
|+|||++++|||++|| +||||+|||+|.+++++.
T Consensus 429 a~L~G~~~~era~~iI~~iAhp~fr~~L~~~~~~~ 463 (506)
T 2nvv_A 429 ADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELG 463 (506)
T ss_dssp EECTTCCHHHHHHHHHHHTSCGGGHHHHHHHTTSC
T ss_pred EEccCCCHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 9999999999999999 699999999999999877
No 8
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=100.00 E-value=2.7e-95 Score=787.83 Aligned_cols=442 Identities=24% Similarity=0.288 Sum_probs=384.4
Q ss_pred hhhhhhccCCCccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhc----CCCcceEEEEeecCCCCCCC--C
Q psy2323 4 KKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKS----KNIQGVTVLDVFSLYPYDNM--T 75 (509)
Q Consensus 4 ~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~----~~~kdLtl~~~~~~g~~~~~--~ 75 (509)
.+.|++| + +|++||+++|||||||++||| +|+|..|++||++|+++ +.+.+++++++.+.++.... .
T Consensus 7 ~~~l~~K---l--vSaeEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~ 81 (514)
T 4eu9_A 7 NVALRSK---V--CPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELA 81 (514)
T ss_dssp CTGGGGG---B--CCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHH
T ss_pred CHHHHhC---C--CcHHHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccc
Confidence 4568888 3 899999999999999999997 89999999999999752 45678999988777753211 1
Q ss_pred CCCCcEEEeccccCHHHHHHHHcCCceeecCCCChHHHHHHcc-CCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhcc
Q psy2323 76 PEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRG-YFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGS 154 (509)
Q Consensus 76 ~~~~~v~~~s~f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g-~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aA 154 (509)
+.+..+++.+||+++.+|+++++|+++|+|.+||+++++++++ ..++|||+|++|++|++|||||+.+.+++..++++|
T Consensus 82 ~~g~i~~~~~~~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~~~~~~~A 161 (514)
T 4eu9_A 82 KANGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLNLA 161 (514)
T ss_dssp HTTCEEEEESCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTHHHHHHHC
T ss_pred cCCCEEEEEecCCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchHHHHHHhC
Confidence 1145577889999999999999999999999999999888765 469999999999999999999999999999999999
Q ss_pred CcEEEEecccCCCC-CCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeee--cceeEEEEcCCCCCC
Q psy2323 155 KRVIAQINDRMPRS-LGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHV--SEIDYGVEVSYELFS 231 (509)
Q Consensus 155 k~VIvEVn~~vP~~-~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~--~~vd~vVe~~~p~~~ 231 (509)
++||+|||+.+|.. .|...||..... .-|...+.|+.+.++|||.|.++. ++||++||++.|+..
T Consensus 162 ~~VIvevn~~~~~~~~g~~~i~~~~~~------------~ip~~~v~piv~vd~~ig~~~~~i~~~~i~~ive~~~p~~~ 229 (514)
T 4eu9_A 162 EKVIIEVNEWQNPMLEGIHDIWDGNVS------------GVPTRDIVPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDEN 229 (514)
T ss_dssp SEEEEEEETTSCGGGTTSEEBCCSCSS------------SSSSCCCCCCCSTTCCCSBSSBCCCGGGEEEEEEECCCCCC
T ss_pred CeEEEEEecCcCceeccccccccCCCC------------CCCCcccccEEECCccccCCcceeChhheeEEEecCCCccc
Confidence 99999999977655 555556544432 123444567788899999999766 589999999999887
Q ss_pred CCCCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHh---------hcCCCCeeccccCchHHHHHHhhhcc--CCe
Q psy2323 232 PGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDE---------LLEDEATLQIGLGKIPEAILSNIKHQ--INL 300 (509)
Q Consensus 232 p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~---------~i~dg~~lqlGiG~ip~aV~~~L~~~--~~l 300 (509)
.+..++++++++||+++|+| +++||++||+|||+|||||++.|.++ +||
T Consensus 230 --------------------~~~~~~~~~~~~Ia~~ia~~i~~e~~ag~l~~dG~~lQ~GiG~ip~AV~~~L~~~~~~~l 289 (514)
T 4eu9_A 230 --------------------APFAAPDETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGPFENL 289 (514)
T ss_dssp --------------------CCCCCCCHHHHHHHHHHHHHHHHHHHTTSSCTTCCCEECCCSHHHHHHHHHHHHSSCCSE
T ss_pred --------------------cCCCCCChhhhhHHHHHHHHHHHHHhhccccCCCceeccCCCchHHHHHHHHhhcCCcCc
Confidence 77788999999999999984 46899999999999999999999875 999
Q ss_pred eEEeCCcchhHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCC-cEEEeeccccCcHHHHhccCccEEeece
Q psy2323 301 GVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTYSNDPAIIRQNHRMTAINTC 379 (509)
Q Consensus 301 gihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~-~~~~~~~~~~n~p~~i~~~~~~vain~a 379 (509)
|+||||++|++++|+|+|++++..|+ ..+.+..|++++|+|++.++ ...+++.+|+|+|.++++. +|+|||||
T Consensus 290 ~~~te~~~d~~~~L~e~G~i~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~n~~~i~~~~-~~iain~a 363 (514)
T 4eu9_A 290 VGYSEVIQDGMLAMLDSGRMRIASAS-----SFSLSPEAAEEINNRMDFFRSKIILRQQDVSNSPGIIRRL-GCIAMNGM 363 (514)
T ss_dssp EEESSEECHHHHHHHHHTSEEEEEES-----EECCCHHHHHHHHHTHHHHHTTEEEEBHHHHTCHHHHHHH-TCEEEECC
T ss_pred eEeecCcchhhHhHHhCCceeccccc-----eEEecHHHHHHHHhhHHhCcCcccccchhccCcHHHhccC-CeEEEecc
Confidence 99999999999999999999998653 23444556888999998765 5667778888888888654 89999999
Q ss_pred eeeecCCCccccCC-CCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEE
Q psy2323 380 LEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYV 457 (509)
Q Consensus 380 ~EvDl~G~vn~~~~-g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~v 457 (509)
+|||++|||||+++ |+|++||+|||+||++||++| |||+|||+ |+| +|||||.++ +||++|++||||
T Consensus 364 ~EvDl~GqVns~~~~g~~~~sG~GG~~Df~~gA~~s-------i~~~~st~-k~g~is~ivp~~~---~v~~~~~~v~~v 432 (514)
T 4eu9_A 364 IEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLS-------IFLSPSTA-KGGKISAIVPMAA---HVDHIMQDAQIF 432 (514)
T ss_dssp SEEETTCCEESSEETTTEECSCCTTHHHHHHHSSEE-------EEECCSEE-TTTTEESEESSCS---SCSBCGGGCCEE
T ss_pred eEecccCceeeeeccCcceecCccchHHHhhccCcE-------EEEEeeec-CCCcccccccCCC---CccCCCCcCCEE
Confidence 99999999999996 899999999999999999888 99999999 999 999999987 999999999999
Q ss_pred EccceEEEcCCCCHHHHHHHhhc-cCCCccHHHHHHHHHHHhc
Q psy2323 458 VTEYGCADLFAKSTRQRAHALIR-IAHPQHREALEREAYEILK 499 (509)
Q Consensus 458 VTE~Gva~LrG~~l~ErA~~li~-iAhp~fr~~L~~~a~~~~~ 499 (509)
|||||||+|||||++|||++||+ ||||||||+|++++++.++
T Consensus 433 VTE~Gva~LrG~s~~era~~lI~~iAhp~~r~~L~~~~~~a~~ 475 (514)
T 4eu9_A 433 VTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQDYFDRALK 475 (514)
T ss_dssp EETTEEEECTTCCHHHHHHHHHHHTSCTTTHHHHHHHHHHHHH
T ss_pred EcCCEEEEecCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999987764
No 9
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=100.00 E-value=2.4e-84 Score=698.78 Aligned_cols=404 Identities=17% Similarity=0.153 Sum_probs=357.5
Q ss_pred CCHHHHhhc--CCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCC--CCCCC-CCc-EEEeccccCH
Q psy2323 17 ISKEQAVQF--IKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYD--NMTPE-DDC-VRRLSFFVSP 90 (509)
Q Consensus 17 ~SaeEA~~~--I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~--~~~~~-~~~-v~~~s~f~~~ 90 (509)
.|++||+++ |+|||||++||++|+|..|++||++|+++.+++|||++++ +.++.. +.... .+. .++.+||+++
T Consensus 47 ~SaeEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~-s~g~~~~~l~~~i~~g~v~r~~~~~~g~ 125 (509)
T 1xr4_A 47 DSLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASS-SLIDAHWPLIEHIKNGVVRQIYTSGLRG 125 (509)
T ss_dssp SSHHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEES-CCCGGGTTHHHHHHTTSEEEEEESBCCH
T ss_pred CCHHHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEec-CCcCcchhHHHHhhcCceEEEEEccCCH
Confidence 499999999 9999999999999999999999999988667999999985 666421 11111 344 5578999999
Q ss_pred HHHHHHHcCCceeecCCCCh---HHHHHHccCCCCcEEEEEecCCCCCCcEEe--cc----CcchhHHHHhccCcEEEEe
Q psy2323 91 YTRKYVNTGAAEYIPIMLND---LPMVFDRGYFSPDVALISVSPPDASGFVSL--GT----NVVELLSVIRGSKRVIAQI 161 (509)
Q Consensus 91 ~~r~~i~~G~i~f~P~~ls~---~~~~l~~g~~~iDVAlI~vs~~De~Gn~sl--g~----s~~~~~~~a~aAk~VIvEV 161 (509)
.+|+++++|+++| |.+|+. .+++++++.+++|||||+++++|++|||+| |. +.+++++++++|++||+||
T Consensus 126 ~~r~~i~~G~~~~-P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~A~~VIaEV 204 (509)
T 1xr4_A 126 KLGEEISAGLMEN-PVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLT 204 (509)
T ss_dssp HHHHHHHHTCCSS-CEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEEEE
T ss_pred HHHHHHHcCCCcC-CeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhhCCEEEEEe
Confidence 9999999999888 999995 888998889999999999999999999998 73 7889999999999999999
Q ss_pred cccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccccC
Q psy2323 162 NDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFS 241 (509)
Q Consensus 162 n~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~~~ 241 (509)
|++||+++++..||...||+| ||.+.|. |
T Consensus 205 n~~vP~~~~~~~Ip~~~VD~I----------------------------------------Ve~d~~g-----------d 233 (509)
T 1xr4_A 205 EEWVEFPNYPASIAQDQVDLI----------------------------------------VQVDEVG-----------D 233 (509)
T ss_dssp SCEECSSCSSCSBCGGGCSEE----------------------------------------EECSCSS-----------C
T ss_pred CCCCCCCCCCcccCcEeeEEE----------------------------------------EeCCCCC-----------C
Confidence 999999877666776666655 8876541 1
Q ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHhhc------CCCCeeccccCchHHHHHHhhhcc-CCeeEEeCC----cchh
Q psy2323 242 PGKGSWLLFSPATEEVTEIDSAIANHICDELL------EDEATLQIGLGKIPEAILSNIKHQ-INLGVHTEL----LTPG 310 (509)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i------~dg~~lqlGiG~ip~aV~~~L~~~-~~lgihtE~----~~d~ 310 (509)
|.++.. ..+..++++++++||+|+|+ +| +||++||+|||+||+||+++|.++ ++|++|||+ ++|+
T Consensus 234 p~ki~~---~~~~~~~~~~~~~IA~~~a~-~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~~~~l~i~se~g~~g~~d~ 309 (509)
T 1xr4_A 234 PEKITA---GAIRLSSNPRELLIARQAAN-VIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGT 309 (509)
T ss_dssp HHHHHS---CCCCCCCCHHHHHHHHHHHH-HHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHH
T ss_pred hhhccc---CCCCCCCChHHHHHHHHHHH-HHHhcCcCCCCCEEEeccChHHHHHHHHhhhhcccceeecccccCCcCCc
Confidence 111100 03456788999999999999 99 999999999999999999999998 999999998 9999
Q ss_pred HHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCCc-EEEeeccccCcH---HHHhccCccEEeeceeeeecCC
Q psy2323 311 VIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNEL-VQMKRGTYSNDP---AIIRQNHRMTAINTCLEIDITG 386 (509)
Q Consensus 311 ~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~-~~~~~~~~~n~p---~~i~~~~~~vain~a~EvDl~G 386 (509)
+++|+|+|++++.. .+++|++|++ +|++.||. |.++|++|+|+| .+++++| +|||||+|||++|
T Consensus 310 ~~~l~e~G~i~~~~-------~~~~f~~g~~---~~~~~n~~~~~~~~~~~~n~~~~~~~~~~ld--iai~galevD~~G 377 (509)
T 1xr4_A 310 MVDLHEKGLIKALL-------DTQSFDGDAA---RSLAQNPHHIEISTNQYANPASKGAACERLN--VVMLSALEIDVNF 377 (509)
T ss_dssp HHHHHHTTSBSCEE-------EEEECSHHHH---HHHHHCTTEEECCHHHHTCTTCSCCGGGGCS--EEEECCSEECTTC
T ss_pred cHhHHhCCCccCCc-------ceeEeeccHH---HHHHhCCcceEEeccccccCcchhhhhcCCC--eEEeeeEEEccCC
Confidence 99999999999964 3789999999 68999995 999999999999 8888884 9999999999999
Q ss_pred CccccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEEE
Q psy2323 387 QVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCAD 465 (509)
Q Consensus 387 ~vn~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~ 465 (509)
|||+|+ +|+++++|+|||+||++||++| |||++||+ +++|||||+|+ +|+|++++||+||||||||+
T Consensus 378 ~vn~~~~~~g~~~~G~GG~~D~~~gA~~s-------ii~~~~t~--~~~skIV~~~~---~v~t~~~~V~~iVTE~Gva~ 445 (509)
T 1xr4_A 378 NVNVMTGSNGVLRGASGGHSDTAAGADLT-------IITAPLVR--GRIPCVVEKVL---TTVTPGASVDVLVTDHGIAV 445 (509)
T ss_dssp CEECSBCTTSCBCSBCTTHHHHHHHSSEE-------EEECCSEE--TTEESBCSSCS---SCSBCGGGCCEEEETTEEEE
T ss_pred ceeeeeccCCeEecccccHHHHhhccCeE-------EEEEcccC--CCCCeEeeCCC---CcccCcCeeCEEECCcEEEE
Confidence 999999 8999999999999999999988 99999998 46999999998 99999999999999999999
Q ss_pred -cCCCCHHHHHHHhhccCCCccHHHHHHHHHHHhcCCCC
Q psy2323 466 -LFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPK 503 (509)
Q Consensus 466 -LrG~~l~ErA~~li~iAhp~fr~~L~~~a~~~~~~~~~ 503 (509)
|||++++|||++| +||| .||++|+++|+++++++.+
T Consensus 446 ~l~g~~l~Era~~l-~iAh-~~~e~L~~~a~~~~~~p~~ 482 (509)
T 1xr4_A 446 NPARQDLLDNLRAA-GVAL-MTIEQLQQRAEQLTGKPQP 482 (509)
T ss_dssp CTTCHHHHHHHHHT-TCCC-BCHHHHHHHHHHHHCCCCC
T ss_pred cCCCCCHHHHhhcc-CCCc-CCHHHHHHHHHHhhCCCcc
Confidence 9999999999999 9999 5999999999999998654
No 10
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-83 Score=694.58 Aligned_cols=403 Identities=16% Similarity=0.172 Sum_probs=356.0
Q ss_pred CccC-CHHHHhhc--CCCCCEEEEcCCCCChH----HHHHHHHHhHhcCCCcceEEEEeecCCCCC-CC-CCC-CCc-EE
Q psy2323 14 MELI-SKEQAVQF--IKPNSLVFVEGVVGTPK----VLMNAMYDHVKSKNIQGVTVLDVFSLYPYD-NM-TPE-DDC-VR 82 (509)
Q Consensus 14 ~Kv~-SaeEA~~~--I~dGdtI~~gg~~g~P~----~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~-~~-~~~-~~~-v~ 82 (509)
.|++ |++||+++ |+|||||++|||+|+|+ +|++||+++ +++|||++++ +.|+.. .+ ... .+. .+
T Consensus 46 ~Kv~~saeEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~-s~g~~~~~l~~~~~~g~v~r 120 (519)
T 2hj0_A 46 DKLLSSIHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPS-SIANVHEPLIDHIKNGVVTN 120 (519)
T ss_dssp CCEESCHHHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEES-CCCGGGTTHHHHHHTTSEEE
T ss_pred CeEeCCHHHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEee-cCCCcchhHHhHhhcCcEEE
Confidence 4678 99999999 99999999999999999 888888887 7899999998 666531 11 111 344 45
Q ss_pred EeccccCHHHHHHHHcCCceeecCCCCh---HHHHHHccCCCCcEEEEEecCCCCCCcEEe--ccC----cchhHHHHhc
Q psy2323 83 RLSFFVSPYTRKYVNTGAAEYIPIMLND---LPMVFDRGYFSPDVALISVSPPDASGFVSL--GTN----VVELLSVIRG 153 (509)
Q Consensus 83 ~~s~f~~~~~r~~i~~G~i~f~P~~ls~---~~~~l~~g~~~iDVAlI~vs~~De~Gn~sl--g~s----~~~~~~~a~a 153 (509)
+.+||+++.+|+++++|+ .|+|.+|++ .+++++++.+++|||||+++++|++|||+| |.+ .+++++++++
T Consensus 121 ~~~~~~g~~~r~~i~~G~-~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~ 199 (519)
T 2hj0_A 121 ITSSGLRDKVGAAISEGI-MENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKY 199 (519)
T ss_dssp EEESBCHHHHHHHHHTTC-CSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHH
T ss_pred EEecCCCcHHHHHHHCCC-CCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhh
Confidence 669999999999999999 999999998 788887788999999999999999999995 854 4899999999
Q ss_pred cCcEEEEecccCCCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCC
Q psy2323 154 SKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPG 233 (509)
Q Consensus 154 Ak~VIvEVn~~vP~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~ 233 (509)
|++||+|||++||++.++..||...||+| ||++.|..
T Consensus 200 A~~VIaEVn~~vP~~~~p~~I~~~~VD~I----------------------------------------Ve~d~p~~--- 236 (519)
T 2hj0_A 200 ADQVVIVTDTLVPYPNTPISIPQTDVDYI----------------------------------------VVVDAIGD--- 236 (519)
T ss_dssp CSEEEEEESSBCCSSCSSCSBCGGGCSEE----------------------------------------EECSCSBC---
T ss_pred CCEEEEEeCCCCCCCCCCceeCeEeeEEE----------------------------------------EECCCCCC---
Confidence 99999999999999877766776666655 88776521
Q ss_pred CCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhc------CCCCeeccccCchHHHHHHhhhcc-CCeeEEeCC
Q psy2323 234 KGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELL------EDEATLQIGLGKIPEAILSNIKHQ-INLGVHTEL 306 (509)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i------~dg~~lqlGiG~ip~aV~~~L~~~-~~lgihtE~ 306 (509)
|+++. ++.+..++++++++||+|+|+ +| +||++||+|||+||+||+.+|.++ ++|++|||+
T Consensus 237 --------~~~~~---~g~~~~~~~~~~~~IA~~~a~-~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~~~~l~i~se~ 304 (519)
T 2hj0_A 237 --------PEGIA---KGATRYTKNPKELLIAEYAAK-VITSSPYYKEGFSFQTGTGGASLAVTRFMREQMIKDDIKANF 304 (519)
T ss_dssp --------THHHH---SCCCCCCCCHHHHHHHHHHHH-HHHTSTTCSTTCEEECCSSHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred --------hhhhc---cCCCCCCCChHHHHHHHHHHH-HHHhcccCCCCCEEEeccChHHHHHHHHHhhhcccceeeece
Confidence 11110 013456778999999999999 75 999999999999999999999998 999999998
Q ss_pred ----cchhHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCC--cEEEeeccc---cCcHHHHhccCccEEee
Q psy2323 307 ----LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE--LVQMKRGTY---SNDPAIIRQNHRMTAIN 377 (509)
Q Consensus 307 ----~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~--~~~~~~~~~---~n~p~~i~~~~~~vain 377 (509)
++|++++|+|+|++++.. .+++|++|+ |+|++.|| ++.+++++| +|+|++|+++| ++||
T Consensus 305 g~~g~~~~~~~lieaG~i~~~~-------~~~~f~~G~---~~~~~~n~~~~~~~~~~~~~n~~n~p~~i~~ld--v~il 372 (519)
T 2hj0_A 305 ALGGITNAMVELLEEGLVDKIL-------DVQDFDHPS---AVSLDRNAEKHYEIDANMYASPLSKGSVINQLD--ICVL 372 (519)
T ss_dssp ECSEECHHHHHHHHTTSEEEEE-------ESEESSHHH---HHHHHHTTTTEEECCHHHHHCSSSSCCGGGGCS--EEEE
T ss_pred eccCcChhHHHHHHCCCCCCCc-------cccccccch---HHHHHhCcHhhEEEchHHhhccCCCHHHhccCC--eeee
Confidence 999999999999999752 378999999 99999999 999999999 88899999995 9999
Q ss_pred ceeeeecCCCccccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEE
Q psy2323 378 TCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQY 456 (509)
Q Consensus 378 ~a~EvDl~G~vn~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~ 456 (509)
||+|||++||||+|+ +|+++++|+|||+||++||+++ |||++||+ +++|||||+|+ +|||++++|++
T Consensus 373 ga~eVD~~Gnvn~~~~~gg~~~~G~GG~~D~~~gA~~~-------ii~~~~t~--g~~skiV~~~~---~vtt~~~~V~~ 440 (519)
T 2hj0_A 373 SALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAAKMS-------LVISPLVR--GRIPTFVDKVN---TVITPGTSVDV 440 (519)
T ss_dssp CCSEECTTCCEECSBCTTCCBCCBCTTHHHHHHHSSEE-------EEECCSEE--TTEESBCSSCS---SCSBCGGGCCE
T ss_pred eeEEEccCCceeeeeccCCeEecccccHHHHhhccCeE-------EEEEcccC--CCCCeeccCCC---CcccCCCCCCE
Confidence 999999999999999 9999999999999999999988 99999996 56999999998 99999999999
Q ss_pred EEccceEEE-cCCCCHHHHHHHhhccCCCccHHHHHHHHHHHhcCCCC
Q psy2323 457 VVTEYGCAD-LFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPK 503 (509)
Q Consensus 457 vVTE~Gva~-LrG~~l~ErA~~li~iAhp~fr~~L~~~a~~~~~~~~~ 503 (509)
||||||||+ |+|++++|||++| +||| +||++|+++|+++++++++
T Consensus 441 VVTE~Gva~~l~g~~l~Era~~l-~ia~-~~~~~L~~~a~~~~~~~~~ 486 (519)
T 2hj0_A 441 VVTEVGIAINPNRPDLIEYFKDL-KVPQ-LTIEELKEKAYAIVGNPQP 486 (519)
T ss_dssp EECSSCEEECTTCHHHHHHTTTC-SSCE-ECHHHHHHHHHHHHCSCCC
T ss_pred EECCCEEEECCCCCCHHHHHHHc-CCCc-ccHHHHHHHHHHhhCCCcc
Confidence 999999999 9999999999999 9999 9999999999999998654
No 11
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=100.00 E-value=8.1e-64 Score=542.31 Aligned_cols=391 Identities=16% Similarity=0.138 Sum_probs=297.0
Q ss_pred ccCCHHHHhhcCCCCCEEEEcC---CCCChHHHHHHHHHhHh-cCCCcceEEEEeecCCCCC--CCCCC--CCcEEE---
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEG---VVGTPKVLMNAMYDHVK-SKNIQGVTVLDVFSLYPYD--NMTPE--DDCVRR--- 83 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg---~~g~P~~Ll~AL~~r~~-~~~~kdLtl~~~~~~g~~~--~~~~~--~~~v~~--- 83 (509)
|++|++||+++|+|||+|++|| .+|.|.+|++||++|++ +++++|||++++.+.|+.+ .+... .+.+++
T Consensus 14 K~~sa~eAv~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~~g~~~~~g~~~l~~~g~v~~~~~ 93 (531)
T 2ahu_A 14 PVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALC 93 (531)
T ss_dssp CBCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSCCBSSSSSTTGGGCSTTTEEEEEE
T ss_pred ccCCHHHHHhhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEeccccCcCcCCHHHHhhCCCcCEEEE
Confidence 5699999999999999999999 57999999999999987 4679999999987766411 11111 344332
Q ss_pred eccccCHHHHHHHHcCCcee------------------ecCCCCh------H-------------------------HHH
Q psy2323 84 LSFFVSPYTRKYVNTGAAEY------------------IPIMLND------L-------------------------PMV 114 (509)
Q Consensus 84 ~s~f~~~~~r~~i~~G~i~f------------------~P~~ls~------~-------------------------~~~ 114 (509)
.+|+.+|.+|+++++|++++ +|.+|+. + .+|
T Consensus 94 s~~g~~~~~r~~i~~G~ie~~~~pqg~la~~~ra~~~g~P~~~t~~g~gT~v~pr~~Gg~~~~~~~~~~~~~~~~~G~~~ 173 (531)
T 2ahu_A 94 GHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEY 173 (531)
T ss_dssp SBCTTSHHHHHHHHTTSSEEECCCHHHHHHHHHHHHTTCCEEEECTTTTSTTSTTTTTTBCSSSCCCCCEEEEEETTEEE
T ss_pred ecCCCCHHHHHHHHCCCceEEecchHHHHHHHHHhhcCCCeEEEeeccCccccccccCccccccccCCceEEEEeCCeeE
Confidence 34678899999999999765 2322211 1 134
Q ss_pred HHccCCCCcEEEEEecCCCCCCcEEeccCcchh--HHHHhccC----cEEEEecccCCCC-CCCccccCCcccEEeccch
Q psy2323 115 FDRGYFSPDVALISVSPPDASGFVSLGTNVVEL--LSVIRGSK----RVIAQINDRMPRS-LGEALVHVSEIDYKEKLSD 187 (509)
Q Consensus 115 l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~--~~~a~aAk----~VIvEVn~~vP~~-~g~~~i~~~~Vd~i~~~~~ 187 (509)
+.++.+++|||||+++++|++|||+|+.+..+. +.++++|| +||+|||++||+. +++..+|++
T Consensus 174 l~~~~l~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~~gg~VIveVn~ivp~~~l~p~~v~Ip---------- 243 (531)
T 2ahu_A 174 LYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIP---------- 243 (531)
T ss_dssp EEEECCCCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHTTTCEEEEEESEEECTTCSCGGGEEEC----------
T ss_pred EEecCCCCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhhcCCEEEEEEcCCCCccccCCCceecc----------
Confidence 455678999999999999999999999876543 48999999 9999999999985 444334433
Q ss_pred hhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccccC-CC---CCCcccCCCCCCCCCHHHHH
Q psy2323 188 LIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFS-PG---KGSWLLFSPATEEVTEIDSA 263 (509)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~~~-p~---~~~~~~~~~~~~~~~~~~~~ 263 (509)
...||+||+.+. +. |+..+.|| |. ....+....+ ..+.+.+++
T Consensus 244 ----------------------------g~~VD~vV~~~~--~~--~~~~~~~d~p~~~~~~~~p~~~~~-~~~~~~~~~ 290 (531)
T 2ahu_A 244 ----------------------------GYLVDIVVVDPD--QS--QLYGGAPVNRFISGDFTLDDSTKL-SLPLNQRKL 290 (531)
T ss_dssp ----------------------------GGGCSEEEECTT--CC--SSTTCCCCCHHHHTSSCCC-------CCCCHHHH
T ss_pred ----------------------------hhhCeEEEecCC--cc--ceeeeeccccccccccccCccccC-CCCCCHHHH
Confidence 236777798652 22 55566777 54 1111100011 234566999
Q ss_pred HHHHHHHhhcCCCCeeccccCchHHHHHHhhhc-c--CCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccCCC
Q psy2323 264 IANHICDELLEDEATLQIGLGKIPEAILSNIKH-Q--INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD 340 (509)
Q Consensus 264 Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~-~--~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~ 340 (509)
||+|+|+ +|+||+++|+||| ||++|+++|.+ . ++|++|||+ |.+++..+ .|.. .+++.++
T Consensus 291 Ia~~~A~-~i~dG~~v~lGiG-iP~av~~~l~~~~~~~~l~~~~E~-----------G~~g~~~~---~g~~-~g~~~~~ 353 (531)
T 2ahu_A 291 VARRALF-EMRKGAVGNVGVG-IADGIGLVAREEGCADDFILTVET-----------GPIGGITS---QGIA-FGANVNT 353 (531)
T ss_dssp HHHHHHT-TCCTTCEEEECSS-TTTTHHHHHHHHTCGGGSEEBCTT-----------SEESCBCC---------CCCBSC
T ss_pred HHHHHHH-hccCCCEEEecCc-HHHHHHHHHHhcCCCCCeEEEEcc-----------ceecCccC---CCcc-ceeEECH
Confidence 9999999 9999999999999 99999999988 3 499999995 44444332 1211 2233333
Q ss_pred hhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCc
Q psy2323 341 KPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGK 420 (509)
Q Consensus 341 ~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~ 420 (509)
|+|++.|++|++++++ +.++|||||+|||++||||++++|.+ ++|+|||+||++||+++
T Consensus 354 ---~~~~~~~~~f~~~~~g-----------~vdvailga~eVD~~Gnvn~~~~G~~-~~G~GG~~D~~~gA~~~------ 412 (531)
T 2ahu_A 354 ---RAILDMTSQFDFYHGG-----------GLDVCYLSFAEVDQHGNVGVHKFNGK-IMGTGGFIDISATSKKI------ 412 (531)
T ss_dssp ---SEECCHHHHHHHHHTT-----------CCSEEEEECSEEETTSCEECSEETTE-ECBCTTHHHHHTTCSEE------
T ss_pred ---HHhcchhhhhheecCC-----------CeEEEEeChHHhCCCCcchhhccCCc-eecCCcchhhhcCCCeE------
Confidence 6777777777666654 33599999999999999999999877 79999999999999877
Q ss_pred EEEEeecccCC-------C--------C-ccceeccccCCCccccCC------CceEEEEccceEEEcC--CCCHHHHHH
Q psy2323 421 AILALPSTDVS-------T--------G-LSKIVPTIKPGAGVVCSR------AHVQYVVTEYGCADLF--AKSTRQRAH 476 (509)
Q Consensus 421 ~ii~~~st~~k-------~--------G-~skIV~~~~~g~~vt~~~------~~v~~vVTE~Gva~Lr--G~~l~ErA~ 476 (509)
|||++||+ | + | +|||||+|+ +++++. +++++||||+|||+|+ |++|+||||
T Consensus 413 -i~~~~~t~-~g~~~~~~~g~l~i~~eg~~~kiV~~v~---~v~~~G~~~~~~~~v~~vVTE~gV~~l~~~gl~l~e~ap 487 (531)
T 2ahu_A 413 -IFCGTLTA-GSLKTEIADGKLNIVQEGRVKKFIRELP---EITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAP 487 (531)
T ss_dssp -EEECCSEE-SSCEEEECSSCEEEEECCSEESEESCCS---SCSBCHHHHHHTTCEEEEECSSEEEEEETTEEEEEEECT
T ss_pred -EEEecccc-CCceeeecCCeEEEeccCCCceECCCCc---cCCCCCcccccCCCcEEEECCCEEEEecCCCceeeeeCC
Confidence 99999998 5 2 4 899999999 888886 8999999999999998 799999999
Q ss_pred Hhh---c-cCCCccHHHHH
Q psy2323 477 ALI---R-IAHPQHREALE 491 (509)
Q Consensus 477 ~li---~-iAhp~fr~~L~ 491 (509)
++. | +++++|...+.
T Consensus 488 gv~~e~dv~~~t~~~~~v~ 506 (531)
T 2ahu_A 488 GVDLQKDILDKMDFTPVIS 506 (531)
T ss_dssp TCCHHHHTGGGSSSCCEEE
T ss_pred CCCHHHHHHHhcCCCeeec
Confidence 987 4 68888887664
No 12
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=100.00 E-value=8.9e-64 Score=533.58 Aligned_cols=403 Identities=14% Similarity=0.145 Sum_probs=300.0
Q ss_pred cCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC--CCcEEE---ecccc
Q psy2323 16 LISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE--DDCVRR---LSFFV 88 (509)
Q Consensus 16 v~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~--~~~v~~---~s~f~ 88 (509)
++|++||+++|+|||||++||| +|.|++|++||.++ +++|||++++....+...++.. .+.+++ .+|..
T Consensus 4 ~~s~~eAv~~I~DG~ti~~gGf~~~g~P~~li~al~~~----~~kdLt~v~~~~g~~~~Gl~~L~~~g~v~r~i~s~~g~ 79 (481)
T 3k6m_A 4 YTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKT----GVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGE 79 (481)
T ss_dssp ESCHHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----CCCSEEEECSCCCBTTBTTHHHHHTTCEEEEEESCCCS
T ss_pred eCCHHHHHhhCCCCCEEEECCccccCcHHHHHHHHHHc----CCCceEEEEeCCCCCcchHHHHHhCCCeeEEEecccCC
Confidence 4799999999999999999998 79999999999998 8899999977542221222221 466653 24458
Q ss_pred CHHHHHHHHcCCce-----------------------eecCCCChHH------------------------------HHH
Q psy2323 89 SPYTRKYVNTGAAE-----------------------YIPIMLNDLP------------------------------MVF 115 (509)
Q Consensus 89 ~~~~r~~i~~G~i~-----------------------f~P~~ls~~~------------------------------~~l 115 (509)
+|.+++++.+|+++ |+|..+.... +|+
T Consensus 80 ~p~~~~~~~~g~ie~e~~pqG~la~~~RA~aaG~P~~~t~~glGT~v~~gg~~~~~~~~~~~~~~~~~~e~~~~~G~~~l 159 (481)
T 3k6m_A 80 NAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFI 159 (481)
T ss_dssp CHHHHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTSHHHHSCCEEEECTTSSEEEECCCCCEEEETTEEEE
T ss_pred CHHHHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCceecccccCChhhcCCcccccCccccccccCCceEEEeECCEEEE
Confidence 99999999999975 2333332111 234
Q ss_pred HccCCCCcEEEEEecCCCCCCcEEeccCc-chhHHHHhccCcEEEEecccCCCCC-CCccccCCcccEEeccchhhhhhc
Q psy2323 116 DRGYFSPDVALISVSPPDASGFVSLGTNV-VELLSVIRGSKRVIAQINDRMPRSL-GEALVHVSEIDYKEKLSDLIRYVC 193 (509)
Q Consensus 116 ~~g~~~iDVAlI~vs~~De~Gn~slg~s~-~~~~~~a~aAk~VIvEVn~~vP~~~-g~~~i~~~~Vd~i~~~~~~~~~~~ 193 (509)
.+..+++|||||+++++|++|||+|+.+. ++++.++++||+||+|||++||+.. ++..||+
T Consensus 160 ~~~~~~~DvAli~a~~aD~~GN~~~~~~~~~~~~~~a~AA~~vIveVe~ivp~g~~~p~~v~i----------------- 222 (481)
T 3k6m_A 160 LEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHI----------------- 222 (481)
T ss_dssp EEECCCEEEEEEEEEEEETTCCEECCGGGCTTHHHHTTSEEEEEEEEEEEECTTSSCGGGCSB-----------------
T ss_pred EEeCCCCCEEEEEcCcCCCCceEEEeCccchhhHHHHHhCCeEEEEEeecccccccCCCeEEe-----------------
Confidence 45678999999999999999999999874 5789999999999999999999863 2333443
Q ss_pred ceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhc
Q psy2323 194 QVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELL 273 (509)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i 273 (509)
|++ .||||||.+...+ ......|+|..- ... .+..++.+++++||+|+|+ +|
T Consensus 223 ------------------pgi---~VD~VV~~~~~~~---~i~~~~~~~~~~-~~~--~~~~~~~~~~~~Ia~raA~-el 274 (481)
T 3k6m_A 223 ------------------PKI---YVHRLVKGEKYEK---RIERLSVRKEED-VKT--RSGKLGDNVRERIIKRAAL-EF 274 (481)
T ss_dssp ------------------CGG---GCCEEEECSCCCC---CCSBCCCC------------------CHHHHHHHHGG-GC
T ss_pred ------------------cch---heEEEEECCCcCC---cceeEeeccccc-ccc--cCCCCCCCHHHHHHHHHHH-hc
Confidence 333 6777899764211 112334666521 110 1234567889999999999 99
Q ss_pred CCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeee-----ccCCChhhHHHhh
Q psy2323 274 EDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITAT-----LLLGDKPLYDFVH 348 (509)
Q Consensus 274 ~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~-----~~~G~~~ly~~i~ 348 (509)
+||+++|+||| ||++|+++|.+.++|++|||.-.-++..+-..|.++. +.++.|+.+.+ ..|++..+|+|++
T Consensus 275 ~dG~~vnlGIG-iP~~v~~~~~~~~~l~l~~E~G~~g~~p~~~~~~~d~--~~in~Gk~~~t~~~g~~~~~~~~~F~~~~ 351 (481)
T 3k6m_A 275 EDGMYANLGIG-IPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDA--DLINAGKETVTVLPGASYFSSDESFAMIR 351 (481)
T ss_dssp CTTEEEEECTT-HHHHHGGGCCTTSCEEEEETTTEEEECCCCCGGGCCT--TCBCTTSBBCCEEEEEEECCHHHHHHHHH
T ss_pred CCCCEEEEccC-HHHHHHhhhccCCcEEEEECCcEeCCccCCCCCccCc--ccccCCCceEeccccceecCCHHHeeeec
Confidence 99999999999 9999999999889999999964444433333333322 23556654433 3366888888875
Q ss_pred cCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccc-cCCCCCCcEEEEeec
Q psy2323 349 NNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGAL-TGLDGKGKAILALPS 427 (509)
Q Consensus 349 ~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~-~s~~~~g~~ii~~~s 427 (509)
.. +.++||||++|||++||||+|++++++++|+|||+||++||+ ++ |||++|
T Consensus 352 gG--------------------~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D~~~ga~~k~-------ii~~~~ 404 (481)
T 3k6m_A 352 GG--------------------HVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKV-------VVTMEH 404 (481)
T ss_dssp TT--------------------CCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHHHTCCTTSEE-------EEECCS
T ss_pred CC--------------------CeEEEEechHhccCCCCccccccCCceeecCCcchhhhccCCceE-------EEEEee
Confidence 53 347999999999999999999999999999999999999994 65 999999
Q ss_pred ccCCCCccceeccccCCCccccCCCceEEEEccceEEEc---CCCCHHHHHHHhh--c-cCCCccHHHHHHHHHHHhcCC
Q psy2323 428 TDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADL---FAKSTRQRAHALI--R-IAHPQHREALEREAYEILKVM 501 (509)
Q Consensus 428 t~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~L---rG~~l~ErA~~li--~-iAhp~fr~~L~~~a~~~~~~~ 501 (509)
|+ |+|.||||++|+ .++++++++++||||||||+| +|+.|.|.||++. + +++++|+..+.++ ++.|
T Consensus 405 t~-k~g~~~Iv~~~~---~~~t~~~~v~~vVTE~gV~~l~~~~gl~L~eiapGv~~edv~~~t~~~~~v~~~----l~~m 476 (481)
T 3k6m_A 405 SA-KGNAHKIMEKCT---LPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPK----LIPM 476 (481)
T ss_dssp BC-GGGCBSEESSCS---SCCSBSSCCCEEECSSEEEEEETTTEEEEEEECTTCCHHHHHHTCBSCCEEEEE----EEEC
T ss_pred Ec-CCCceEEecccc---cCCCCCCcceEEEcCcEEEEecCCCcEEEEEeCCCCCHHHHHHhcCCceEeCCC----cccC
Confidence 98 888999999998 778899999999999999999 3788889888886 4 6777777665332 3455
Q ss_pred CCCC
Q psy2323 502 PKMD 505 (509)
Q Consensus 502 ~~~~ 505 (509)
+..+
T Consensus 477 ~~~~ 480 (481)
T 3k6m_A 477 QQVT 480 (481)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 13
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=100.00 E-value=4.2e-36 Score=306.33 Aligned_cols=240 Identities=15% Similarity=0.152 Sum_probs=179.0
Q ss_pred ccCCHHHHh-hcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEee-cCCCCCCCCCCCCcEEE--e----
Q psy2323 15 ELISKEQAV-QFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVF-SLYPYDNMTPEDDCVRR--L---- 84 (509)
Q Consensus 15 Kv~SaeEA~-~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~-~~g~~~~~~~~~~~v~~--~---- 84 (509)
|++|++||+ ++|+|||+|++||| +|.|.+|++||+++ +++|||+++.. +.++..++. .+.+++ .
T Consensus 2 K~~sa~eAv~~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~~dLtlv~~~~g~~~~~l~~--~g~v~~~~~s~~~ 75 (317)
T 1poi_A 2 KVMTLKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ----GITDLTGLGGAAGGDWDMLIG--NGRVKAYINCYTA 75 (317)
T ss_dssp CBCCHHHHHHHHCCTTCEEEECSBTTBSCCHHHHHHHHHT----TCCCEEEECSEECHHHHHHHH--TTCEEEEEESEEC
T ss_pred cccCHHHHHHhhCCCCCEEEECCccccCcHHHHHHHHHhC----CCCCEEEEEECCCCChHHHhc--cCceeEEEccccc
Confidence 468999999 99999999999997 89999999999997 78999999543 333211222 233332 1
Q ss_pred --ccc-cCHHHHHHHHcCCcee------------------ecCCCChH------HH------------------------
Q psy2323 85 --SFF-VSPYTRKYVNTGAAEY------------------IPIMLNDL------PM------------------------ 113 (509)
Q Consensus 85 --s~f-~~~~~r~~i~~G~i~f------------------~P~~ls~~------~~------------------------ 113 (509)
+|+ +++.+|+++++|++++ +|.+|++. ++
T Consensus 76 ~~~~~~~~~~~r~~~~~G~ie~~~~pqg~la~~~ra~a~g~P~~~t~~g~gT~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 155 (317)
T 1poi_A 76 NSGVTNVSRRFRKWFEAGKLTMEDYSQDVIYMMWHAAALGLPFLPVTLMQGSGLTDEWGISKEVRKTLDKVPDDKFKYID 155 (317)
T ss_dssp BTTTBSSCHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHTCSEEEESCSTTSHHHHCCSSCHHHHHTCTTSCSCSCEEEE
T ss_pred ccccccCChHHHHHHHCCCceEEecchHHHHHHHHHHHcCCCEEEeccccCcccccccCcccccccccccccccceeeee
Confidence 444 6799999999999874 45444322 11
Q ss_pred --------HHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEEEecccCCCC-C--CCccccCCcccEE
Q psy2323 114 --------VFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRS-L--GEALVHVSEIDYK 182 (509)
Q Consensus 114 --------~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIvEVn~~vP~~-~--g~~~i~~~~Vd~i 182 (509)
|+.+..+++|||||+++++|++|||+++.+.++++.++++||+||+|||++||+. + ++..+|+
T Consensus 156 ~pf~~g~~~l~~~~l~~DVAlI~a~~aD~~GN~~~~~~~~~~~~~a~aAk~VIveVe~ivp~g~l~~~p~~v~i------ 229 (317)
T 1poi_A 156 NPFKPGEKVVAVPVPQVDVAIIHAQQASPDGTVRIWGGKFQDVDIAEAAKYTIVTCEEIISDEEIRRDPTKNDI------ 229 (317)
T ss_dssp ETTEEEEEEEEEECCCCSEEEEEEEEECTTCCEECCSCCTTHHHHHHHSSEEEEEEEEECCHHHHHSSGGGCCB------
T ss_pred ccccCCceeEeccCCCCcEEEEEeccCCCCceEEEecCCCchHHHHhhCCEEEEEEcCCCCchhhcCCCceEEe------
Confidence 1223457999999999999999999997778889999999999999999999984 4 2223332
Q ss_pred eccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCCCCCCCCCcc-ccCCCCCCcccCCCCCCCCCHHH
Q psy2323 183 EKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWL-LFSPGKGSWLLFSPATEEVTEID 261 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~~~p~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~ 261 (509)
| ...||+|||++.. ..|.|+... .|||.... ....+.+.+
T Consensus 230 -----------------------------p---g~~VD~VV~~~~~-~~p~~~~~~y~~D~~~~~------~~~~~~~~~ 270 (317)
T 1poi_A 230 -----------------------------P---GMCVDAVVLAPYG-AHPSQCYGLYDYDNPFLK------VYDKVSKTQ 270 (317)
T ss_dssp -----------------------------C---GGGCCEEEECTTT-TTTSBBTTTBCCCHHHHH------HHHHHTTSH
T ss_pred -----------------------------C---hHHEEEEEEeCCC-CCccccCCcccCCHHHHh------hhcccCccH
Confidence 2 2367788997632 223344444 47776211 001234568
Q ss_pred HHHHHHHHHhhcC---CCCeeccccCchHHHHHHhhhccCCeeEEeCCcch
Q psy2323 262 SAIANHICDELLE---DEATLQIGLGKIPEAILSNIKHQINLGVHTELLTP 309 (509)
Q Consensus 262 ~~Ia~~va~~~i~---dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d 309 (509)
+.|++++++ +|. ||+++|. +||++++..|+++++||+||||+++
T Consensus 271 ~~~~~~~~~-~v~~~~d~~~~q~---~i~~a~l~~L~~~~~lG~ht~~~~~ 317 (317)
T 1poi_A 271 EDFDAFCKE-WVFDLKDHDEYLN---KLGATRLINLKVVPGLGYHIDMTKE 317 (317)
T ss_dssp HHHHHHHHH-HTTTCSSHHHHHH---HHCHHHHHTTBCCTTTSSCCCGGGC
T ss_pred HHHHHHHHH-HcCcCCCHHHHHH---hChHHHHHHhhcCCCCeecccccCC
Confidence 899999999 998 9999996 5889999999999999999999863
No 14
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=100.00 E-value=6.6e-35 Score=279.64 Aligned_cols=192 Identities=17% Similarity=0.303 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcchhHHHHHHhcCcccccccccCCcee-----ee
Q psy2323 261 DSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQIT-----AT 335 (509)
Q Consensus 261 ~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~-----~~ 335 (509)
+++||+|+|+ +|+||+++|+||| ||++|+++|. .+++.+|||.-.-++...-..|..+ .+.++.|+.. .+
T Consensus 2 r~~Ia~raA~-el~dG~~vnlGIG-iP~~va~~~~-~~~v~l~~E~G~~g~~p~p~~~~~d--~~~in~G~~~~t~~~~~ 76 (207)
T 3rrl_B 2 REAIIKRAAK-ELKEGMYVNLGIG-LPTLVANEVS-GMNIVFQSENGLLGIGAYPLEGSVD--ADLINAGKETITVVPGA 76 (207)
T ss_dssp HHHHHHHHHT-TCCTTCEEEECTT-GGGGGGGGGS-SSCCEEEETTTEEEECCCCCTTCCC--TTCBCTTSBBCCEEEEE
T ss_pred hHHHHHHHHH-hCCCCCEEEECCC-hHHHHHHhcc-CCcEEEEeccceecCcCCCCccccC--HhHeecCCceeeecCCc
Confidence 7899999999 9999999999999 9999999999 8899999995332221111111111 1122333321 12
Q ss_pred ccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCC
Q psy2323 336 LLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGL 415 (509)
Q Consensus 336 ~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~ 415 (509)
..|.+...|+++ ++.+-++||||++|||++||+|+|++++++++|+|||+||++||+++
T Consensus 77 ~~~~~~~~F~~~--------------------~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d~~~~A~~v- 135 (207)
T 3rrl_B 77 SFFNSADSFAMI--------------------RGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGAKKV- 135 (207)
T ss_dssp EECCHHHHHHHH--------------------HTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHHHHHHSSEE-
T ss_pred eeeCCHHHHHHH--------------------hCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHHHHhCCCEE-
Confidence 234555555553 44445899999999999999999999999999999999999999776
Q ss_pred CCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHHhhccCCCccHHHHHHH
Q psy2323 416 DGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALERE 493 (509)
Q Consensus 416 ~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~li~iAhp~fr~~L~~~ 493 (509)
|||++||+ |+|.||||++|+ .+.++++++++||||||||+|++. ...|++++..-..+++++.
T Consensus 136 ------i~~~~~t~-k~G~~kiv~~~~---~~~t~~~~v~~vVTe~gV~~l~~~-----~l~L~eiapGv~~e~v~~~ 198 (207)
T 3rrl_B 136 ------IVIMEHCN-KYGESKVKKECS---LPLTGKGVVHQLITDLAVFEFSNN-----AMKLVELQEGVSLDQVKEK 198 (207)
T ss_dssp ------EEECCSBC-TTSCBSEESSCS---SCCSBSSCCSEEECSSEEEEEETT-----EEEEEEECTTCCHHHHHHH
T ss_pred ------EEEEeeec-CCCcceECcccc---ccCCCCCceEEEECCceEEEEcCC-----eEEEEEeCCCCCHHHHHHh
Confidence 99999999 888999999998 667889999999999999999852 3445567666667766543
No 15
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=99.97 E-value=2.3e-33 Score=278.10 Aligned_cols=187 Identities=19% Similarity=0.183 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhc--cCCeeEEeCCcchhHHHHHHhcCccccccc-----ccCCce
Q psy2323 260 IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKH--QINLGVHTELLTPGVIKLFNSGVINNSKKS-----IDRGQI 332 (509)
Q Consensus 260 ~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~--~~~lgihtE~~~d~~~~l~e~G~i~~~~k~-----~~~g~~ 332 (509)
.+++||+++|+ +|+||+++|+||| ||++|+++|.+ +++|++|+| +|.+++.+|. .+++..
T Consensus 7 ~~e~Ia~~aA~-~i~dG~~v~lGiG-iP~~va~~~~~~~~~~l~l~~E-----------~G~lg~~p~~~~~~~~d~~~~ 73 (260)
T 1poi_B 7 NKEMQAVTIAK-QIKNGQVVTVGTG-LPLIGASVAKRVYAPDCHIIVE-----------SGLMDCSPVEVPRSVGDLRFM 73 (260)
T ss_dssp HHHHHHHHHHT-TCCTTCEEECCSS-HHHHHHHHHHHTTCTTCEEEET-----------TTEEEECCSSCCSSTTCHHHH
T ss_pred HHHHHHHHHHH-hCCCCCEEEeCCC-HHHHHHHHHHHhcCCCEEEEEe-----------CceecCcccCcccCccCCCcE
Confidence 47899999999 9999999999999 99999999988 799999996 5899888763 333443
Q ss_pred e-eeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCC-----ccccccccHHH
Q psy2323 333 T-ATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGT-----RIYSGFGGQVD 406 (509)
Q Consensus 333 ~-~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~-----r~~sG~GG~~D 406 (509)
. +.+.+|+.++|+|+.+ ..+++++.+++||||+|||++||||++++|. ++++|+|||+|
T Consensus 74 ~~a~~~~~~~~~fd~~~~---------------~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D 138 (260)
T 1poi_B 74 AHCGCIWPNVRFVGFEIN---------------EYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG 138 (260)
T ss_dssp TSEEEECCHHHHHHHHHH---------------HHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH
T ss_pred eehhhhcCHHHHhcccch---------------hhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHH
Confidence 4 3388999999999633 1345566799999999999999999988877 77999999999
Q ss_pred HhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCC---------------C-ceEEEEccceEEEcC---
Q psy2323 407 FMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSR---------------A-HVQYVVTEYGCADLF--- 467 (509)
Q Consensus 407 f~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~---------------~-~v~~vVTE~Gva~Lr--- 467 (509)
|++||+++ ||| +++. +|||++|+ +||++. + ++++||||+|||+|+
T Consensus 139 ~~~~A~~~-------iv~-~h~~-----rk~V~~v~---~vt~~G~~~~~~~r~~~~~t~~r~~~~vVTe~gV~~~~~~~ 202 (260)
T 1poi_B 139 IATYSNTI-------IMM-QHEK-----RRFMNKID---YVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKT 202 (260)
T ss_dssp HHHHSCEE-------EEC-CCCT-----TTBCSSCS---CCSBCCSTTSTTHHHHTTCCTTCCEEEEEETTEEEEECTTT
T ss_pred HHhCCCEE-------EEE-ECCC-----CeecccCc---eeeccCcccccccccccccccCCCCCEEEeCceEEEecCCC
Confidence 99999887 999 8776 69999999 555553 2 889999999999996
Q ss_pred -CCCHHHHHHHhh--c-cCCCccHHHH
Q psy2323 468 -AKSTRQRAHALI--R-IAHPQHREAL 490 (509)
Q Consensus 468 -G~~l~ErA~~li--~-iAhp~fr~~L 490 (509)
|+.|.|.+|++. + .++.+|...+
T Consensus 203 ~~l~L~e~~Pgvt~edv~~~t~f~~~v 229 (260)
T 1poi_B 203 KRMYLAAYYPTSSPEDVLENTGFDLDV 229 (260)
T ss_dssp CCEEEEEECTTCCHHHHHHTCSSCCCC
T ss_pred CcEEEEEeCCCCCHHHHHHhcCCCeec
Confidence 467777777665 3 4555555544
No 16
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=99.95 E-value=1.1e-28 Score=239.32 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=123.8
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCC-CCCCC--CCcEEE---ecc
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYD-NMTPE--DDCVRR---LSF 86 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~-~~~~~--~~~v~~---~s~ 86 (509)
|++|++||+++|+|||+|++||| +|.|.+|++||++| +++|||++++.+ |..+ .+... .+.+++ .+|
T Consensus 4 k~~sa~eAv~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~----~~~dLtl~~~~~-g~~~~g~~~l~~~g~v~~~~~s~~ 78 (220)
T 1k6d_A 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES----GVRDLTLIANDT-AFVDTGIGPLIVNGRVRKVIASHI 78 (220)
T ss_dssp SEECHHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSBC-CCTTSTTHHHHHTTCEEEEEESBC
T ss_pred ccCCHHHHHhhCCCCCEEEECCccccCCHHHHHHHHHHC----CCCCEEEEEecC-CCCccCHHHHhhCCCccEEEEcCC
Confidence 46999999999999999999998 89999999999998 689999998876 5422 12111 344332 245
Q ss_pred ccCHHHHHHHHcCCcee------------------ecCCCChH-----------------HHHHHccCCCCcEEEEEecC
Q psy2323 87 FVSPYTRKYVNTGAAEY------------------IPIMLNDL-----------------PMVFDRGYFSPDVALISVSP 131 (509)
Q Consensus 87 f~~~~~r~~i~~G~i~f------------------~P~~ls~~-----------------~~~l~~g~~~iDVAlI~vs~ 131 (509)
+.+|.+|+++++|++++ +|.+|++. .+++.+..+++|||||++++
T Consensus 79 ~~~~~~r~~~~~G~ie~~~~p~g~~~~~~ra~~~g~P~~~t~~g~gt~v~~g~~~~~~~g~~~l~~~~l~~DVAli~a~~ 158 (220)
T 1k6d_A 79 GTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHR 158 (220)
T ss_dssp TTCHHHHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHCCCeEEEecChHHHHHHHHHHhCCCCeEEeecccCceeccCceeEeeCCeEEEEecCCCCcEEEEEeec
Confidence 78999999999999875 44444322 13444567799999999999
Q ss_pred CCCCCcEEeccC-cchhHHHHhccCcEEEEecccCCCC-CCCccccCC
Q psy2323 132 PDASGFVSLGTN-VVELLSVIRGSKRVIAQINDRMPRS-LGEALVHVS 177 (509)
Q Consensus 132 ~De~Gn~slg~s-~~~~~~~a~aAk~VIvEVn~~vP~~-~g~~~i~~~ 177 (509)
+|++|||+|+.+ .+++..++++||+||+|||++||+. +++..+|++
T Consensus 159 aD~~Gn~~~~~~~~~~~~~~a~aA~~VIveVn~~vp~~~l~p~~v~ip 206 (220)
T 1k6d_A 159 CDTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTP 206 (220)
T ss_dssp EETTCCEECCHHHHTTHHHHHHHEEEEEEEEEEEECTTCSCGGGCCBC
T ss_pred CCCCceEEEecCCccccHHHHHhcCEEEEEEccccCccccCCceEEeC
Confidence 999999999854 5678889999999999999999984 555455544
No 17
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=99.94 E-value=9.8e-28 Score=235.67 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=122.5
Q ss_pred ccC-CHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCC--CCcEEE---ecc
Q psy2323 15 ELI-SKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE--DDCVRR---LSF 86 (509)
Q Consensus 15 Kv~-SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~--~~~v~~---~s~ 86 (509)
|++ |++||+++|+|||||++||| +|.|.+|++||++| +++|||++++.+.++...+... .+.+++ .+|
T Consensus 6 K~~~sa~eAv~~IkdG~tV~~ggf~~~g~P~~li~aL~~~----~~~dLtl~~~~~~~~~~gl~~l~~~g~v~~~~~s~~ 81 (241)
T 3cdk_A 6 KVLSSSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQ----GVKDLTVVSNNCGVDDWGLGLLLANKQIKKMIASYV 81 (241)
T ss_dssp CBCSCHHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEEESSCCCSSSTTHHHHHTTCEEEEEESBC
T ss_pred eeeCCHHHHHhhCCCCCEEEECCcCccCcHHHHHHHHHHc----CCCCEEEEEecCCCCCccHHHHhhCCCcCeEEEecc
Confidence 457 99999999999999999997 89999999999999 6899999998777663222111 344332 245
Q ss_pred ccCHHHHHHHHcCCcee-----------------------ecCCCCh------------HHHHHHccCCCCcEEEEEecC
Q psy2323 87 FVSPYTRKYVNTGAAEY-----------------------IPIMLND------------LPMVFDRGYFSPDVALISVSP 131 (509)
Q Consensus 87 f~~~~~r~~i~~G~i~f-----------------------~P~~ls~------------~~~~l~~g~~~iDVAlI~vs~ 131 (509)
+.++.+|+++++|++++ +|..|+. ..+++.+..+++|||||++++
T Consensus 82 g~~~~~r~~~~~G~ie~~~~p~g~l~~~~ra~~~g~P~~~t~~g~gT~v~~g~~~~~~~g~~~l~~~~l~~DVAlI~a~~ 161 (241)
T 3cdk_A 82 GENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWK 161 (241)
T ss_dssp CSCHHHHHHHTTTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTSCEEEETTEEEEEEECCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHCCCceEEEcCHHHHHHHHHHHhcCCCeEEEecccCceeccCceeeccCCceEEEccCCCCcEEEEEecc
Confidence 58899999999999874 3333331 113444566799999999999
Q ss_pred CCCCCcEEeccC-cchhHHHHhccCcEEEEecccCCCC-CCCcccc
Q psy2323 132 PDASGFVSLGTN-VVELLSVIRGSKRVIAQINDRMPRS-LGEALVH 175 (509)
Q Consensus 132 ~De~Gn~slg~s-~~~~~~~a~aAk~VIvEVn~~vP~~-~g~~~i~ 175 (509)
+|++|||+++.+ .++.+.++++||+||+|||++||+. +++..||
T Consensus 162 aD~~Gn~~~~~~~~~~~~~~a~aAk~VIveVn~~vp~g~l~p~~v~ 207 (241)
T 3cdk_A 162 ADTMGNLIFRKTARNFNPIAAMAGKITIAEAEEIVEAGELDPDHIH 207 (241)
T ss_dssp EETTCCEECCGGGCTTHHHHHHHEEEEEEEEEEEECTTSSCTTTCS
T ss_pred CCCCCeEEEecCchhhHHHHHHhCCEEEEEEeCCCCccccCCceEE
Confidence 999999999854 4678999999999999999999985 3433444
No 18
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=99.94 E-value=1.2e-26 Score=226.64 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=121.5
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCC-CCCC--CCCcEEEe---cc
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYD-NMTP--EDDCVRRL---SF 86 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~-~~~~--~~~~v~~~---s~ 86 (509)
|++|++||+++|+|||+|++||| +|.|.+|++||+++ +++|||++++ +.|... .+.. ..+.+++. +|
T Consensus 7 k~~sa~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~kdLtli~~-~~g~~~~g~~~L~~~G~v~r~i~s~~ 81 (235)
T 3rrl_A 7 VITDLDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKK----GIKDLIVVSN-NCGVDDFGLGILLEKKQIKKIIASYV 81 (235)
T ss_dssp EESSTHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECS-CCCCSSSGGGGGGTTTCEEEEEESCC
T ss_pred ccCCHHHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhc----CCCcEEEEEc-CCCCCCcCHHHHHhCCCeeEEEeccc
Confidence 46899999999999999999997 89999999999998 7899999987 344311 1221 14555532 45
Q ss_pred ccCHHHHHHHHcCCceeecCCCChHHHHHHcc-----------------------------------CCCCcEEEEEecC
Q psy2323 87 FVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRG-----------------------------------YFSPDVALISVSP 131 (509)
Q Consensus 87 f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g-----------------------------------~~~iDVAlI~vs~ 131 (509)
+.+|.+|+++++|++++...+.+.+.+.++++ .+++|||||++++
T Consensus 82 g~~~~~~~~~~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~~ 161 (235)
T 3rrl_A 82 GENKIFESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYK 161 (235)
T ss_dssp CSCHHHHHHHHHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECSE
T ss_pred cCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEeee
Confidence 68999999999999988666555555555442 4689999999999
Q ss_pred CCCCCcEEeccCc-chhHHHHhccCcEEEEecccCCCC
Q psy2323 132 PDASGFVSLGTNV-VELLSVIRGSKRVIAQINDRMPRS 168 (509)
Q Consensus 132 ~De~Gn~slg~s~-~~~~~~a~aAk~VIvEVn~~vP~~ 168 (509)
+|++||++++.+. +++..+|++||+||+|||++||+.
T Consensus 162 aD~~GN~~~~~~~~~~~~~~a~aA~~vIveve~iv~~g 199 (235)
T 3rrl_A 162 SDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAG 199 (235)
T ss_dssp EETTCCEECCGGGCTTHHHHHHTEEEEEEEESEEECTT
T ss_pred cCCCceEEEecCcccccHHHHHhcCEEEEEEeeccccC
Confidence 9999999998876 568889999999999999999985
No 19
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=97.04 E-value=0.00097 Score=63.94 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=98.0
Q ss_pred HHHHHhhcCCCCeecccc---CchHHHHHHhhhc--cCCeeEEeCCcc---hhHHHHHHhcCcccccccccCCceeeecc
Q psy2323 266 NHICDELLEDEATLQIGL---GKIPEAILSNIKH--QINLGVHTELLT---PGVIKLFNSGVINNSKKSIDRGQITATLL 337 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlGi---G~ip~aV~~~L~~--~~~lgihtE~~~---d~~~~l~e~G~i~~~~k~~~~g~~~~~~~ 337 (509)
+-++. +|+||++|-+|- -+.|.++...|.+ .+||.+.+-... .++-.|+++|.+... .+++.
T Consensus 9 ~eAv~-~IkdG~tv~~ggf~~~g~P~~l~~aL~~~~~~dLtl~~~~~g~~~~g~~~l~~~g~v~~~---------~~s~~ 78 (220)
T 1k6d_A 9 QDATG-FFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKV---------IASHI 78 (220)
T ss_dssp HHHGG-GCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEECSBCCCTTSTTHHHHHTTCEEEE---------EESBC
T ss_pred HHHHh-hCCCCCEEEECCccccCCHHHHHHHHHHCCCCCEEEEEecCCCCccCHHHHhhCCCccEE---------EEcCC
Confidence 34566 899999998872 2279999999975 489998764432 234678899988663 34442
Q ss_pred CCChhhHHHhhcCC-cEEE----------------eeccccCc------------------HHH-HhccCccEEeeceee
Q psy2323 338 LGDKPLYDFVHNNE-LVQM----------------KRGTYSND------------------PAI-IRQNHRMTAINTCLE 381 (509)
Q Consensus 338 ~G~~~ly~~i~~n~-~~~~----------------~~~~~~n~------------------p~~-i~~~~~~vain~a~E 381 (509)
..+..+-+.+.++. .+++ .|.-|+.- +.+ ...++-++|+.-+-.
T Consensus 79 ~~~~~~r~~~~~G~ie~~~~p~g~~~~~~ra~~~g~P~~~t~~g~gt~v~~g~~~~~~~g~~~l~~~~l~~DVAli~a~~ 158 (220)
T 1k6d_A 79 GTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHR 158 (220)
T ss_dssp TTCHHHHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHCCCeEEEecChHHHHHHHHHHhCCCCeEEeecccCceeccCceeEeeCCeEEEEecCCCCcEEEEEeec
Confidence 33445555555553 3333 22222211 111 112355899999999
Q ss_pred eecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceecc--ccCCCccccCCCceEEEE
Q psy2323 382 IDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPT--IKPGAGVVCSRAHVQYVV 458 (509)
Q Consensus 382 vDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~--~~~g~~vt~~~~~v~~vV 458 (509)
.|.+||++-+.. ++.- -..+++.|++. |+- +-++||. +.+ ..|.+|...||+||
T Consensus 159 aD~~Gn~~~~~~-----~~~~-~~~~a~aA~~V-------Ive---------Vn~~vp~~~l~p-~~v~ipg~~VD~VV 214 (220)
T 1k6d_A 159 CDTLGNLTYQLS-----ARNF-NPLIALAADIT-------LVE---------PDELVETGELQP-DHIVTPGAVIDHII 214 (220)
T ss_dssp EETTCCEECCHH-----HHTT-HHHHHHHEEEE-------EEE---------EEEEECTTCSCG-GGCCBCGGGCCEEE
T ss_pred CCCCceEEEecC-----Cccc-cHHHHHhcCEE-------EEE---------EccccCccccCC-ceEEeChHHeEEEE
Confidence 999999875421 0101 22367777664 442 2556665 322 36888999999998
No 20
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=96.93 E-value=0.0016 Score=63.18 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=97.7
Q ss_pred HHHHhhcCCCCeeccc-cC--chHHHHHHhhhcc--CCeeEEeCCcch---hHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 267 HICDELLEDEATLQIG-LG--KIPEAILSNIKHQ--INLGVHTELLTP---GVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 267 ~va~~~i~dg~~lqlG-iG--~ip~aV~~~L~~~--~~lgihtE~~~d---~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
-++. +|+||++|-+| +| +.|.++...|.++ +||.+.+-.... ++-.|+++|.+... .+++ +
T Consensus 13 eAv~-~IkdG~tV~~gGf~~~g~P~~li~aL~~~~~kdLtli~~~~g~~~~g~~~L~~~G~v~r~---------i~s~-~ 81 (235)
T 3rrl_A 13 KALS-ALKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKI---------IASY-V 81 (235)
T ss_dssp HHHT-TCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEECSCCCCSSSGGGGGGTTTCEEEE---------EESC-C
T ss_pred HHHh-hCCCCCEEEECCcCccCCHHHHHHHHHhcCCCcEEEEEcCCCCCCcCHHHHHhCCCeeEE---------Eecc-c
Confidence 3556 89999999887 22 3899999999763 899987754322 56778899888753 3343 3
Q ss_pred C-ChhhHHHhhcCC-cEEEeeccccCcH---------HH--------------------------HhccCccEEeeceee
Q psy2323 339 G-DKPLYDFVHNNE-LVQMKRGTYSNDP---------AI--------------------------IRQNHRMTAINTCLE 381 (509)
Q Consensus 339 G-~~~ly~~i~~n~-~~~~~~~~~~n~p---------~~--------------------------i~~~~~~vain~a~E 381 (509)
| +..+-+.+.++. .+...|++..-.- .+ ...++-++|+.-+-.
T Consensus 82 g~~~~~~~~~~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~~ 161 (235)
T 3rrl_A 82 GENKIFESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYK 161 (235)
T ss_dssp CSCHHHHHHHHHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECSE
T ss_pred cCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEeee
Confidence 4 444555555553 3444444211000 00 001356899999999
Q ss_pred eecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceecccc-CCCccccCCCceEEEE
Q psy2323 382 IDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIK-PGAGVVCSRAHVQYVV 458 (509)
Q Consensus 382 vDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~-~g~~vt~~~~~v~~vV 458 (509)
+|.+||++-+.-... - ...+++.|++. |+-. -++||... +...|.+|.-.||+||
T Consensus 162 aD~~GN~~~~~~~~~-----~-~~~~a~aA~~v-------Ivev---------e~iv~~g~l~p~~v~ipg~~VD~VV 217 (235)
T 3rrl_A 162 SDTLGNLVFRKTARN-----F-NPLCAMAAKIC-------VAEV---------EEIVPAGELDPDEIHLPGIYVQHIY 217 (235)
T ss_dssp EETTCCEECCGGGCT-----T-HHHHHHTEEEE-------EEEE---------SEEECTTSSCTTTCSBCGGGCSEEE
T ss_pred cCCCceEEEecCccc-----c-cHHHHHhcCEE-------EEEE---------eeccccCccCCceEEeChHHeEEEE
Confidence 999999985432211 1 13477777654 5432 34555421 1236888999999997
No 21
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=96.81 E-value=0.0073 Score=58.63 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=97.2
Q ss_pred HHHHHhhcCCCCeecccc---CchHHHHHHhhhc--cCCeeEEeCCc-ch--hHHHHHHhcCcccccccccCCceeeecc
Q psy2323 266 NHICDELLEDEATLQIGL---GKIPEAILSNIKH--QINLGVHTELL-TP--GVIKLFNSGVINNSKKSIDRGQITATLL 337 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlGi---G~ip~aV~~~L~~--~~~lgihtE~~-~d--~~~~l~e~G~i~~~~k~~~~g~~~~~~~ 337 (509)
+-++. +|+||++|-+|- -+.|.++...|.+ .+||.+.+-.. .+ ++-.|+++|.+... .+++.
T Consensus 12 ~eAv~-~IkdG~tV~~ggf~~~g~P~~li~aL~~~~~~dLtl~~~~~~~~~~gl~~l~~~g~v~~~---------~~s~~ 81 (241)
T 3cdk_A 12 KEAAK-LIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDWGLGLLLANKQIKKM---------IASYV 81 (241)
T ss_dssp HHHHT-TCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEEESSCCCSSSTTHHHHHTTCEEEE---------EESBC
T ss_pred HHHHh-hCCCCCEEEECCcCccCcHHHHHHHHHHcCCCCEEEEEecCCCCCccHHHHhhCCCcCeE---------EEecc
Confidence 34566 999999998873 2389999999975 48999876432 22 34678899988752 33432
Q ss_pred CCChhhHHHhhcCCcEE-----------------------Eeecccc------------C-cHHH-HhccCccEEeecee
Q psy2323 338 LGDKPLYDFVHNNELVQ-----------------------MKRGTYS------------N-DPAI-IRQNHRMTAINTCL 380 (509)
Q Consensus 338 ~G~~~ly~~i~~n~~~~-----------------------~~~~~~~------------n-~p~~-i~~~~~~vain~a~ 380 (509)
.-+..+-+.+.++ .++ +.|..+- + .+.+ -..++-++|+.-+-
T Consensus 82 g~~~~~r~~~~~G-~ie~~~~p~g~l~~~~ra~~~g~P~~~t~~g~gT~v~~g~~~~~~~g~~~l~~~~l~~DVAlI~a~ 160 (241)
T 3cdk_A 82 GENKIFERQFLSG-ELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAW 160 (241)
T ss_dssp CSCHHHHHHHTTT-SSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTSCEEEETTEEEEEEECCCEEEEEEEEE
T ss_pred CCCHHHHHHHHCC-CceEEEcCHHHHHHHHHHHhcCCCeEEEecccCceeccCceeeccCCceEEEccCCCCcEEEEEec
Confidence 2234444554444 222 3332111 0 0111 11235589999999
Q ss_pred eeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceeccccC-CCccccCCCceEEEE
Q psy2323 381 EIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKP-GAGVVCSRAHVQYVV 458 (509)
Q Consensus 381 EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~-g~~vt~~~~~v~~vV 458 (509)
..|.+||++-+...... -..+++.|+++ |+- +-++||..+- ...|.+|...||+||
T Consensus 161 ~aD~~Gn~~~~~~~~~~------~~~~a~aAk~V-------Ive---------Vn~~vp~g~l~p~~v~ipg~~VD~VV 217 (241)
T 3cdk_A 161 KADTMGNLIFRKTARNF------NPIAAMAGKIT-------IAE---------AEEIVEAGELDPDHIHTPGIYVQHVV 217 (241)
T ss_dssp EEETTCCEECCGGGCTT------HHHHHHHEEEE-------EEE---------EEEEECTTSSCTTTCSBCGGGCSEEE
T ss_pred cCCCCCeEEEecCchhh------HHHHHHhCCEE-------EEE---------EeCCCCccccCCceEEeChHHeEEEE
Confidence 99999998764322111 16677777764 543 2455565211 136888999999997
No 22
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=96.47 E-value=0.0044 Score=62.65 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=96.6
Q ss_pred HhhcCCCCeecccc---CchHHHHHHhhhc--cCCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeec----cCC-
Q psy2323 270 DELLEDEATLQIGL---GKIPEAILSNIKH--QINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL----LLG- 339 (509)
Q Consensus 270 ~~~i~dg~~lqlGi---G~ip~aV~~~L~~--~~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~----~~G- 339 (509)
. +|+||++|-+|- -+.|.++...|.+ .+||.+.+-....+.-.|+++|.+... .++| .+|
T Consensus 12 ~-~IkdG~tV~~gGf~~~g~P~~li~aL~~~~~~dLtlv~~~~g~~~~~l~~~g~v~~~---------~~s~~~~~~~~~ 81 (317)
T 1poi_A 12 K-YVHSGDHIALGGFTTDRKPYAAVFEILRQGITDLTGLGGAAGGDWDMLIGNGRVKAY---------INCYTANSGVTN 81 (317)
T ss_dssp H-HCCTTCEEEECSBTTBSCCHHHHHHHHHTTCCCEEEECSEECHHHHHHHHTTCEEEE---------EESEECBTTTBS
T ss_pred h-hCCCCCEEEECCccccCcHHHHHHHHHhCCCCCEEEEEECCCCChHHHhccCceeEE---------Eccccccccccc
Confidence 6 899999999872 2379999999976 489998743323233678899987653 3333 222
Q ss_pred -ChhhHHHhhcCC-cE---------------------EEeecccc----------------Cc----HHH-------Hh-
Q psy2323 340 -DKPLYDFVHNNE-LV---------------------QMKRGTYS----------------ND----PAI-------IR- 368 (509)
Q Consensus 340 -~~~ly~~i~~n~-~~---------------------~~~~~~~~----------------n~----p~~-------i~- 368 (509)
+..+-+.+.++. .+ .+.+..+- |. +.+ +.
T Consensus 82 ~~~~~r~~~~~G~ie~~~~pqg~la~~~ra~a~g~P~~~t~~g~gT~v~~~~~~~~~~~~~~~~~~~~~~~~v~~pf~~g 161 (317)
T 1poi_A 82 VSRRFRKWFEAGKLTMEDYSQDVIYMMWHAAALGLPFLPVTLMQGSGLTDEWGISKEVRKTLDKVPDDKFKYIDNPFKPG 161 (317)
T ss_dssp SCHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHTCSEEEESCSTTSHHHHCCSSCHHHHHTCTTSCSCSCEEEEETTEEE
T ss_pred CChHHHHHHHCCCceEEecchHHHHHHHHHHHcCCCEEEeccccCcccccccCcccccccccccccccceeeeeccccCC
Confidence 244445554442 21 12222220 00 000 11
Q ss_pred -------ccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceecc-
Q psy2323 369 -------QNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPT- 440 (509)
Q Consensus 369 -------~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~- 440 (509)
.++-++|+.-+-..|..||++-+. + .+-...+++.|+++ |+- +-++||.
T Consensus 162 ~~~l~~~~l~~DVAlI~a~~aD~~GN~~~~~------~-~~~~~~~a~aAk~V-------Ive---------Ve~ivp~g 218 (317)
T 1poi_A 162 EKVVAVPVPQVDVAIIHAQQASPDGTVRIWG------G-KFQDVDIAEAAKYT-------IVT---------CEEIISDE 218 (317)
T ss_dssp EEEEEEECCCCSEEEEEEEEECTTCCEECCS------C-CTTHHHHHHHSSEE-------EEE---------EEEECCHH
T ss_pred ceeEeccCCCCcEEEEEeccCCCCceEEEec------C-CCchHHHHhhCCEE-------EEE---------EcCCCCch
Confidence 145689999999999999987543 2 35577888888764 542 3566665
Q ss_pred -cc-CCCccccCCCceEEEE
Q psy2323 441 -IK-PGAGVVCSRAHVQYVV 458 (509)
Q Consensus 441 -~~-~g~~vt~~~~~v~~vV 458 (509)
+. ....|.+|...||+||
T Consensus 219 ~l~~~p~~v~ipg~~VD~VV 238 (317)
T 1poi_A 219 EIRRDPTKNDIPGMCVDAVV 238 (317)
T ss_dssp HHHSSGGGCCBCGGGCCEEE
T ss_pred hhcCCCceEEeChHHEEEEE
Confidence 31 1236888999999997
No 23
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=95.99 E-value=0.033 Score=55.03 Aligned_cols=150 Identities=21% Similarity=0.138 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeec-cccCchHHHHHHhhhc-cCCeeEEe-CCc-----chhHHHHHHhcCcccccccccCC
Q psy2323 259 EIDSAIANHICDELLEDEATLQ-IGLGKIPEAILSNIKH-QINLGVHT-ELL-----TPGVIKLFNSGVINNSKKSIDRG 330 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lq-lGiG~ip~aV~~~L~~-~~~lgiht-E~~-----~d~~~~l~e~G~i~~~~k~~~~g 330 (509)
...++||++++. +|+||++|= ++-++....++..+.+ .+++.+++ |.- ..-...|.+.|+=
T Consensus 94 ~~~~~Ia~~a~~-~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG~~~a~~L~~~gI~---------- 162 (276)
T 1vb5_A 94 EAKRELASIGAQ-LIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE---------- 162 (276)
T ss_dssp HHHHHHHHHHHH-HCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHH-HccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhhHHHHHHHHHCCCC----------
Confidence 568999999999 999998766 8888888888877765 57888876 721 1223455554321
Q ss_pred ceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcc
Q psy2323 331 QITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRG 410 (509)
Q Consensus 331 ~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~g 410 (509)
++- .+......+ +.+. +..|.||=-|...|.+.+- +|..+ ++.-
T Consensus 163 --vtl--i~dsa~~~~--------------------m~~v--d~vivGAd~i~~nG~v~nk-iGt~~---------iA~~ 206 (276)
T 1vb5_A 163 --FEV--ITDAQMGLF--------------------CREA--SIAIVGADMITKDGYVVNK-AGTYL---------LALA 206 (276)
T ss_dssp --EEE--ECGGGHHHH--------------------HTTC--SEEEECCSEECTTSCEEEE-TTHHH---------HHHH
T ss_pred --EEE--EcHHHHHHH--------------------HccC--CEEEEcccEEecCCCEeec-hhHHH---------HHHH
Confidence 111 111111112 2222 6889999999988888654 66654 6666
Q ss_pred cccCCCCCCcEEEEeecccCCCCccceeccccCC--------------------CccccCCCceEEEEccceEEEc
Q psy2323 411 ALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPG--------------------AGVVCSRAHVQYVVTEYGCADL 466 (509)
Q Consensus 411 A~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g--------------------~~vt~~~~~v~~vVTE~Gva~L 466 (509)
|+.. |+.++++.-+. ||.+. ..| ..=.+|...++.||||.|++.-
T Consensus 207 A~~~----~vp~~V~a~~~------K~~~~-~~~~~i~iE~r~~~e~~v~v~np~fD~tP~~lI~~iITe~Gv~~p 271 (276)
T 1vb5_A 207 CHEN----AIPFYVAAETY------KFHPT-LKSGDVMLMERDLIRGNVRIRNVLFDVTPWKYVRGIITELGIVIP 271 (276)
T ss_dssp HHHT----TCCEEEECCGG------GBCSS-CCGGGCCCCBCCCEETTEECCCBCEEEECGGGCSEEEETTEEECT
T ss_pred HHHc----CCCEEEecccc------ccCcc-cCccccccccCCccccCccccCCCeEecCHHHCCEEEeCCCccCc
Confidence 6665 55555543332 22222 101 1113578889999999999853
No 24
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=95.89 E-value=0.063 Score=52.12 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=73.7
Q ss_pred ccCCHHHHhh-cCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHH
Q psy2323 15 ELISKEQAVQ-FIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTR 93 (509)
Q Consensus 15 Kv~SaeEA~~-~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r 93 (509)
|..=++.|++ +|+|||+|++|.++ +...++++|.++.+++++++++++++.. ... .
T Consensus 13 K~~iA~~Aa~~~I~dg~~IgLgsGS-T~~~~~~~L~~~~~~~~l~~itvVTnS~-------------------~~a---~ 69 (244)
T 2f8m_A 13 KKIVAYKAVDEYVQSNMTIGLGTGS-TVFYVLERIDNLLKSGKLKDVVCIPTSI-------------------DTE---L 69 (244)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCST-TTHHHHHHHHHHHHHTSSCSCEEEESSH-------------------HHH---H
T ss_pred HHHHHHHHHHHhCCCCCEEEEcChH-HHHHHHHHHhhhhhccCCCCEEEECCcH-------------------HHH---H
Confidence 3356788999 99999999999875 5788999998764323455788775411 000 1
Q ss_pred HHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccC-cchhH-HHHhccCcEEEEecc
Q psy2323 94 KYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTN-VVELL-SVIRGSKRVIAQIND 163 (509)
Q Consensus 94 ~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s-~~~~~-~~a~aAk~VIvEVn~ 163 (509)
.+.+.| +..+... . ...+|+||.-+...|.+.++.-+.. +..-. .++.+|+++|+-+++
T Consensus 70 ~l~~~g-i~v~~l~---------~-~~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~ 130 (244)
T 2f8m_A 70 KARKLG-IPLTTLE---------K-HSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDE 130 (244)
T ss_dssp HHHHHT-CCBCCCC---------S-SCCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEG
T ss_pred HHHHCC-CeEEEec---------c-cCcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEEC
Confidence 111112 2221110 1 1168999999999999877766543 33333 377899987777765
No 25
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=95.75 E-value=0.032 Score=60.02 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=102.2
Q ss_pred HHHHHHhh--cCCCCeeccc--cCchHH----HHHHhhhc--cCCeeEEeCCcc---hhHHHHHHhcCcccccccccCCc
Q psy2323 265 ANHICDEL--LEDEATLQIG--LGKIPE----AILSNIKH--QINLGVHTELLT---PGVIKLFNSGVINNSKKSIDRGQ 331 (509)
Q Consensus 265 a~~va~~~--i~dg~~lqlG--iG~ip~----aV~~~L~~--~~~lgihtE~~~---d~~~~l~e~G~i~~~~k~~~~g~ 331 (509)
++-++. + |+||++|-+| .| .|. ++...|.+ .+||.+.+-.+. +++.++++.|.+...
T Consensus 52 aeEAv~-~~~IkdG~tV~~gGf~g-~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~-------- 121 (519)
T 2hj0_A 52 IHEAIE-KTRLKDGMTISFHHHFR-EGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNI-------- 121 (519)
T ss_dssp HHHHHH-HTTCCTTCEEEECCTTG-GGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEE--------
T ss_pred HHHHHh-cCCCCCCCEEEECCccC-CchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEE--------
Confidence 445555 6 9999999887 44 888 88888876 379998765443 267788888887652
Q ss_pred eeeeccCCChhhHHHhhcCCcEEEeeccccC---cHHHHh--ccCccEEeeceeeeecCCCccccCCCCccccccccHHH
Q psy2323 332 ITATLLLGDKPLYDFVHNNELVQMKRGTYSN---DPAIIR--QNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVD 406 (509)
Q Consensus 332 ~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n---~p~~i~--~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~D 406 (509)
.++.+| ..+-+.+.++. .+.|..|.. -|.++. .++-++|+..+-..|.+||++-+ +|... -++.|
T Consensus 122 --~~~~~g-~~~r~~i~~G~--~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~-~g~s~----~~s~~ 191 (519)
T 2hj0_A 122 --TSSGLR-DKVGAAISEGI--MENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGT-RGKTT----CGSLG 191 (519)
T ss_dssp --EESBCH-HHHHHHHHTTC--CSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESS-SSSSC----CSCCH
T ss_pred --EecCCC-cHHHHHHHCCC--CCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEe-cCccc----cccch
Confidence 233333 33556665554 566777776 677775 36779999999999999998631 11110 13345
Q ss_pred HhcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEE
Q psy2323 407 FMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVV 458 (509)
Q Consensus 407 f~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vV 458 (509)
|+.-+.+. ++-+|+- +-++||... + ....+...||+||
T Consensus 192 ~~~~~a~~----A~~VIaE--------Vn~~vP~~~-~-p~~I~~~~VD~IV 229 (519)
T 2hj0_A 192 YAMIDAKY----ADQVVIV--------TDTLVPYPN-T-PISIPQTDVDYIV 229 (519)
T ss_dssp HHHHHHHH----CSEEEEE--------ESSBCCSSC-S-SCSBCGGGCSEEE
T ss_pred hhHHHHhh----CCEEEEE--------eCCCCCCCC-C-CceeCeEeeEEEE
Confidence 55555444 4445543 244555432 1 3445667889887
No 26
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=95.65 E-value=0.089 Score=56.28 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=88.1
Q ss_pred HHHHHhhcCCCCeeccc----cCchHHHHHHhhhcc---CC--eeEEeC-CcchhHH-HHHHhcCcccccccccCCceee
Q psy2323 266 NHICDELLEDEATLQIG----LGKIPEAILSNIKHQ---IN--LGVHTE-LLTPGVI-KLFNSGVINNSKKSIDRGQITA 334 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlG----iG~ip~aV~~~L~~~---~~--lgihtE-~~~d~~~-~l~e~G~i~~~~k~~~~g~~~~ 334 (509)
+-++. +|+||++|-+| .| .|.++...|.++ ++ |.+.+. .+.+..- .|+++|.+.. ..
T Consensus 19 eEAv~-~IkdGdtV~~gGf~~~G-~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~----------~~ 86 (497)
T 2g39_A 19 AEAAD-LIQDGMTVGMSGFTRAG-EAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLAR----------RM 86 (497)
T ss_dssp HHHHT-TCCTTCEEEECCBTTBS-CCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEE----------EE
T ss_pred HHHHh-hCCCCCEEEECCCCCCC-CHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEE----------EE
Confidence 34556 99999999987 34 888888888653 67 666664 3333322 6788888764 22
Q ss_pred eccCCChhhHHHhhcCCcEEEeeccccCcHHHHhc--c-CccEEeeceeeeecCCCccccCCCCccccccccHHHHhccc
Q psy2323 335 TLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ--N-HRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGA 411 (509)
Q Consensus 335 ~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~--~-~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA 411 (509)
.| +....+-+.+.++ .+.|.|..++.-|..++. + +-++|+..+-..|..||++-+ ...+-..++++.|
T Consensus 87 ~~-~~~~~~r~~i~~G-~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~-------~s~~~~~~~a~aA 157 (497)
T 2g39_A 87 PF-QVDSTLRKAINAG-EVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPT-------TSVGNSASFAIFA 157 (497)
T ss_dssp SC-CCCHHHHHHHHTT-SSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECC-------SBCBTHHHHHHHS
T ss_pred ee-CCCHHHHHHHHcC-CCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe-------CCcccHHHHHHhC
Confidence 33 3344555666554 478889999888887764 3 468999999999999998652 1224557777776
Q ss_pred ccC
Q psy2323 412 LTG 414 (509)
Q Consensus 412 ~~s 414 (509)
+++
T Consensus 158 ~~V 160 (497)
T 2g39_A 158 KQV 160 (497)
T ss_dssp SEE
T ss_pred CeE
Confidence 654
No 27
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=95.62 E-value=0.027 Score=60.47 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=100.4
Q ss_pred HHHHHHhh--cCCCCeeccccC-chHHHHHHhhhc------cCCeeEEeCCcc---hhHHHHHHhcCcccccccccCCce
Q psy2323 265 ANHICDEL--LEDEATLQIGLG-KIPEAILSNIKH------QINLGVHTELLT---PGVIKLFNSGVINNSKKSIDRGQI 332 (509)
Q Consensus 265 a~~va~~~--i~dg~~lqlGiG-~ip~aV~~~L~~------~~~lgihtE~~~---d~~~~l~e~G~i~~~~k~~~~g~~ 332 (509)
++-++. + |+||++|-+|-+ +.|.++...|.+ .+||.+.+-.+. +.+.++++.|.+...
T Consensus 49 aeEAv~-~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~--------- 118 (509)
T 1xr4_A 49 LEEAIR-RSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQI--------- 118 (509)
T ss_dssp HHHHHH-HTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEE---------
T ss_pred HHHHhc-CCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEE---------
Confidence 666777 7 999999988733 167777777754 379998763333 367788888886542
Q ss_pred eeeccCCChhhHHHhhcCCcEEEeeccccC---cHHHHh--ccCccEEeeceeeeecCCCccccCCCCccccccccHHHH
Q psy2323 333 TATLLLGDKPLYDFVHNNELVQMKRGTYSN---DPAIIR--QNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDF 407 (509)
Q Consensus 333 ~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n---~p~~i~--~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df 407 (509)
.+|.+| ..+-+.+.++. .. +|..|+. -|+++. .++-++|+..+-..|.+||++-+. |..-....|=...+
T Consensus 119 -~~~~~g-~~~r~~i~~G~-~~-~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~-g~~~~~s~~~~~a~ 193 (509)
T 1xr4_A 119 -YTSGLR-GKLGEEISAGL-ME-NPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFS-GKSRCGSLGYAQVD 193 (509)
T ss_dssp -EESBCC-HHHHHHHHHTC-CS-SCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSS-SSSCCCCCTTHHHH
T ss_pred -EEccCC-HHHHHHHHcCC-Cc-CCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeC-CCCcccchHHHHHH
Confidence 345455 44556665443 22 3888885 588875 456789999999999999986421 10000111222444
Q ss_pred hcccccCCCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEE
Q psy2323 408 MRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVV 458 (509)
Q Consensus 408 ~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vV 458 (509)
+..|++ +|+- +-++||... + ....+...||+||
T Consensus 194 a~~A~~--------VIaE--------Vn~~vP~~~-~-~~~Ip~~~VD~IV 226 (509)
T 1xr4_A 194 AQYAKC--------VVLL--------TEEWVEFPN-Y-PASIAQDQVDLIV 226 (509)
T ss_dssp HHHCSE--------EEEE--------ESCEECSSC-S-SCSBCGGGCSEEE
T ss_pred HhhCCE--------EEEE--------eCCCCCCCC-C-CcccCcEeeEEEE
Confidence 444443 4442 345566532 2 3456788899998
No 28
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=95.22 E-value=0.1 Score=56.00 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCCeeccc----cCchHHHHHHhhhcc------C----CeeEEeC-CcchhHH-HHHHhcCcccccccccC
Q psy2323 266 NHICDELLEDEATLQIG----LGKIPEAILSNIKHQ------I----NLGVHTE-LLTPGVI-KLFNSGVINNSKKSIDR 329 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlG----iG~ip~aV~~~L~~~------~----~lgihtE-~~~d~~~-~l~e~G~i~~~~k~~~~ 329 (509)
+-++. +|+||++|-+| .| .|.++...|.++ + +|.+++. .+.+..- .|+++|.+...
T Consensus 9 eEAv~-~IkdGdtV~~gGf~~~G-~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~------ 80 (506)
T 2nvv_A 9 EEAAE-FVHHNDNVGFSGFTPAG-NPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFR------ 80 (506)
T ss_dssp HHHHT-TCCTTCEEEECCSSSTT-CCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEE------
T ss_pred HHHHh-hCCCCCEEEECCCCCCC-CHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEE------
Confidence 34557 99999999987 34 787777777542 2 6777764 2233222 67787877642
Q ss_pred CceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhc--c-CccEEeeceeeeecCCCccccCCCCccccccccHHH
Q psy2323 330 GQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ--N-HRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVD 406 (509)
Q Consensus 330 g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~--~-~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~D 406 (509)
.+| +....+-+.+.++ .+.+.|+.+++-|..++. + +-++|+..+-..|..||++-+ ...+=..+
T Consensus 81 ----~~~-~~~~~~r~~i~~G-~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~-------~s~~~~~~ 147 (506)
T 2nvv_A 81 ----TPY-QSNKDLRNLINNG-STSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPT-------TGVGILPT 147 (506)
T ss_dssp ----ESC-CCCHHHHHHHHTT-SSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECC-------SBCBTHHH
T ss_pred ----eee-CCCHHHHHHHHcC-CCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe-------CCcCcHHH
Confidence 233 3344566666554 478999999998988764 4 468999999999999998653 12245677
Q ss_pred HhcccccC
Q psy2323 407 FMRGALTG 414 (509)
Q Consensus 407 f~~gA~~s 414 (509)
+++.|+++
T Consensus 148 ~a~aA~~V 155 (506)
T 2nvv_A 148 ICRLADRI 155 (506)
T ss_dssp HHHHCSEE
T ss_pred HHHhCCcE
Confidence 77776654
No 29
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=95.17 E-value=0.11 Score=49.90 Aligned_cols=110 Identities=10% Similarity=0.144 Sum_probs=71.3
Q ss_pred CHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHHH
Q psy2323 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVN 97 (509)
Q Consensus 18 SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i~ 97 (509)
=++.|+++|+||++|+++.++ +...++++|.++.+++++ ++|++++. ......+.
T Consensus 10 iA~~A~~~I~~g~~IglgsGS-T~~~~~~~L~~~~~~~~l-~itvVtnS-----------------------~~~a~~l~ 64 (226)
T 2pjm_A 10 VAKEAVKLVKDGMVIGLGTGS-TAALFIRELGNRIREEEL-TVFGIPTS-----------------------FEAKMLAM 64 (226)
T ss_dssp HHHHHGGGCCTTCEEEECCSH-HHHHHHHHHHHHHHHHTC-CCEEEESS-----------------------HHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCCH-HHHHHHHHHHhhhhccCC-cEEEEeCc-----------------------HHHHHHHH
Confidence 477899999999999998774 467889999887432222 67766431 11111122
Q ss_pred cCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCC-CcEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 98 TGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDAS-GFVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 98 ~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~-Gn~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
+..+...+ +. ..++|++|.-+...|.+ +|+.-|.... ....++.+|+++|+-+++
T Consensus 65 ~~gi~v~~---------l~--~~~iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~ 122 (226)
T 2pjm_A 65 QYEIPLVT---------LD--EYDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDE 122 (226)
T ss_dssp HTTCCBCC---------TT--TCCCSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEG
T ss_pred hcCCeEEe---------ec--cccCCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEec
Confidence 22222221 11 23499999999999999 8987664433 245577889988887765
No 30
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=95.15 E-value=0.013 Score=61.76 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHHH-HhhcCCCCeeccccCc-hHHHHHHhhhcc----CCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 265 ANHIC-DELLEDEATLQIGLGK-IPEAILSNIKHQ----INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 265 a~~va-~~~i~dg~~lqlGiG~-ip~aV~~~L~~~----~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
++-++ . +|+||++|-+|-+. .|.++...|.++ +||.+.+-... +--++++.+ +.+. ....++.+
T Consensus 14 a~eAv~~-~IkdG~tV~~ggf~g~P~~Li~AL~~~~~~~~dLtli~~~~~-~~~~~~~~~-l~~~-------i~~~~~~~ 83 (439)
T 3d3u_A 14 ADEAVVD-SLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYF-GDAPHLAPE-MRSH-------VHPTLNFL 83 (439)
T ss_dssp HHHHHHH-HCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBS-SCCTTSSGG-GTTT-------EEEEC---
T ss_pred HHHHHHh-hCCCcCEEEECcccChHHHHHHHHHHhhCCCCCEEEEEecCC-CcchhccHH-hCCc-------EEEEECCC
Confidence 55666 7 89999999888442 899999999776 89998875311 100111111 1110 11223444
Q ss_pred CChhhHHHhhcCCcEEEeeccccCcHHHHhc--cCccEEeeceeeeecCCCccccCCCCccccccccHHHHhccccc
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ--NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALT 413 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~--~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~ 413 (509)
|.. +-+.+.+ ....+.|..++.-|..+.. ++-++|+..+-..|..||++- |. ..+=...+++.|++
T Consensus 84 g~~-~r~~i~~-G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~---g~----s~~~~~~~~~aA~~ 151 (439)
T 3d3u_A 84 EGN-SRPASRD-RRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSF---GV----SCDYTKAAAECAPV 151 (439)
T ss_dssp -------------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEEC---TT----BCBTHHHHHHHCSE
T ss_pred ChH-HHHHHHc-CCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEE---ec----cccchHHHHhhCCe
Confidence 433 3333333 3567888888888888775 667999999999999999854 21 22335555665544
No 31
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=95.12 E-value=0.1 Score=50.14 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.=++.|+++|+|||+|+++.++ +...++++|.++.++..++++|++++.. . .. ..+.
T Consensus 9 ~IA~~Aa~~I~dg~~I~LdsGS-T~~~~a~~L~~~~~~~~l~~itvVTnS~-~------------------~a---~~l~ 65 (229)
T 1lk5_A 9 IAAKEALKFIEDDMVIGLGTGS-TTAYFIKLLGEKLKRGEISDIVGVPTSY-Q------------------AK---LLAI 65 (229)
T ss_dssp HHHHHHGGGCCTTCEEEECCSH-HHHHHHHHHHHHHHTTSSCSCEEEESSH-H------------------HH---HHHH
T ss_pred HHHHHHHHhCCCCCEEEEcChH-HHHHHHHHHhhhhhhccCCCEEEECCcH-H------------------HH---HHHH
Confidence 3467899999999999999774 4788889997764322344788875421 0 00 0011
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhH--HHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELL--SVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~--~~a~aAk~VIvEVn~ 163 (509)
+.| ++.+. +. ....+|+||+-+...|.+.++.-+....... .++.+|+++|+-+++
T Consensus 66 ~~g-i~vi~---------l~-~~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~ 123 (229)
T 1lk5_A 66 EHD-IPIAS---------LD-QVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDE 123 (229)
T ss_dssp HTT-CCBCC---------GG-GCSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEG
T ss_pred hCC-CeEEE---------eC-CcccCCEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEch
Confidence 111 11111 01 1247999999999999887766554333333 355688888777765
No 32
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.03 E-value=0.1 Score=56.33 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=98.8
Q ss_pred HHHHHhhcCCCCeecccc-C---chHHHHHHhhhc-------cCCeeEEeCCc-ch----hHHHHHHhcCcccccccccC
Q psy2323 266 NHICDELLEDEATLQIGL-G---KIPEAILSNIKH-------QINLGVHTELL-TP----GVIKLFNSGVINNSKKSIDR 329 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlGi-G---~ip~aV~~~L~~-------~~~lgihtE~~-~d----~~~~l~e~G~i~~~~k~~~~ 329 (509)
+-++. +|+||++|-+|= | +.|.++...|.+ .+||.+.+-.. .+ ++-.|+++|.+...
T Consensus 19 ~eAv~-~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~~g~~~~~g~~~l~~~g~v~~~------ 91 (531)
T 2ahu_A 19 QEAVN-YIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWA------ 91 (531)
T ss_dssp HHHHT-TCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSCCBSSSSSTTGGGCSTTTEEEE------
T ss_pred HHHHh-hCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEeccccCcCcCCHHHHhhCCCcCEE------
Confidence 34556 899999998863 1 379999888853 47999876543 33 35568888887653
Q ss_pred CceeeeccCCChhhHHHhhcCC-cEE---------------------Eeeccc---c---------C-------------
Q psy2323 330 GQITATLLLGDKPLYDFVHNNE-LVQ---------------------MKRGTY---S---------N------------- 362 (509)
Q Consensus 330 g~~~~~~~~G~~~ly~~i~~n~-~~~---------------------~~~~~~---~---------n------------- 362 (509)
.+++...+..+-+.+.++. .++ +.+..+ + |
T Consensus 92 ---~~s~~g~~~~~r~~i~~G~ie~~~~pqg~la~~~ra~~~g~P~~~t~~g~gT~v~pr~~Gg~~~~~~~~~~~~~~~~ 168 (531)
T 2ahu_A 92 ---LCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEF 168 (531)
T ss_dssp ---EESBCTTSHHHHHHHHTTSSEEECCCHHHHHHHHHHHHTTCCEEEECTTTTSTTSTTTTTTBCSSSCCCCCEEEEEE
T ss_pred ---EEecCCCCHHHHHHHHCCCceEEecchHHHHHHHHHhhcCCCeEEEeeccCccccccccCccccccccCCceEEEEe
Confidence 3343322344545554443 221 222211 0 0
Q ss_pred --cHHH-HhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceec
Q psy2323 363 --DPAI-IRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVP 439 (509)
Q Consensus 363 --~p~~-i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~ 439 (509)
.+.+ ...++-++|+.-+-..|.+||++-+.-... -....+++.|+.+ | |+.|+- +-++||
T Consensus 169 ~G~~~l~~~~l~~DVAlI~a~~aD~~Gn~~~~~~~~~-----~~~~~~a~aAk~~-g--g~VIve---------Vn~ivp 231 (531)
T 2ahu_A 169 DNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMY-----LDALVIAQAVHNN-G--GIVMMQ---------VQKMVK 231 (531)
T ss_dssp TTEEEEEEECCCCSEEEEECSEEETTCCEECTTSSCC-----TTHHHHHHHHHTT-T--CEEEEE---------ESEEEC
T ss_pred CCeeEEEecCCCCeEEEEEcccCCCCceEEEcCcccc-----cCHHHHHHhHhhc-C--CEEEEE---------EcCCCC
Confidence 0111 113456899999999999999875432111 2234688888865 3 454543 245555
Q ss_pred c--ccCCCccccCCCceEEEEc
Q psy2323 440 T--IKPGAGVVCSRAHVQYVVT 459 (509)
Q Consensus 440 ~--~~~g~~vt~~~~~v~~vVT 459 (509)
. +. ...|.+|.-.||+||-
T Consensus 232 ~~~l~-p~~v~Ipg~~VD~vV~ 252 (531)
T 2ahu_A 232 KATLH-PKSVRIPGYLVDIVVV 252 (531)
T ss_dssp TTCSC-GGGEEECGGGCSEEEE
T ss_pred ccccC-CCceecchhhCeEEEe
Confidence 4 22 2367888889999983
No 33
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=94.95 E-value=0.071 Score=51.19 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=70.3
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.=++.|+++|+|||+|+++.++ +...++++|.++.++.+++++|++++. -......
T Consensus 11 ~IA~~Aa~~I~dg~~I~LgsGS-T~~~~~~~L~~~~~~~~l~~itvVTnS-----------------------~~~a~~l 66 (227)
T 1uj6_A 11 EAAHAAIAYVQDGMVVGLGTGS-TARYAVLELARRLREGELKGVVGVPTS-----------------------RATEELA 66 (227)
T ss_dssp HHHHHHHTTCCTTCEEEECCSH-HHHHHHHHHHHHHHTTSSCSCEEEESS-----------------------HHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEcCCH-HHHHHHHHHhhhhhhcCCCCEEEECCc-----------------------HHHHHHH
Confidence 3467888999999999999774 577888999776432233448877541 1111111
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccC-cchhHHHHhc-cCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTN-VVELLSVIRG-SKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s-~~~~~~~a~a-Ak~VIvEVn~ 163 (509)
.+..++.+.. . .+.+|+||+-+...|.++++..+.. +..-..++.+ |+++|+-+++
T Consensus 67 ~~~gi~v~~l----------~-~~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~a~~~ivlaD~ 124 (227)
T 1uj6_A 67 KREGIPLVDL----------P-PEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124 (227)
T ss_dssp HHTTCCBCCC----------C-TTCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEG
T ss_pred HhCCCeEEEc----------C-CCcCCEEEECCCccCccccEECCHHHHHHHHHHHHhccCCEEEEEEc
Confidence 1111221111 2 3679999999999998886555543 4444456666 8877777765
No 34
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=94.81 E-value=0.082 Score=50.66 Aligned_cols=112 Identities=16% Similarity=0.016 Sum_probs=73.5
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.-++.|+++|+|||+|++|.++ +-..++++|.++.+++. .+++++++. +.. ...+.
T Consensus 7 ~iA~~A~~~V~dg~vIgLGsGS-T~~~~i~~L~~~~~~~~-~~i~~VttS-------------------~~t---~~~l~ 62 (225)
T 3l7o_A 7 IAGVRAAQYVEDGMIVGLGTGS-TAYYFVEEVGRRVQEEG-LQVIGVTTS-------------------SRT---TAQAQ 62 (225)
T ss_dssp HHHHHHHTTCCTTCEEEECCST-THHHHHHHHHHHHHHHC-CCCEEEESS-------------------HHH---HHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCcH-HHHHHHHHHHHhhhhcC-CCEEEEcCC-------------------HHH---HHHHh
Confidence 4578899999999999998775 57889999988754222 256665431 100 01111
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcch--hHHHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVE--LLSVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~--~~~~a~aAk~VIvEVn~ 163 (509)
+.| +..++. .....+|++|.-+-..|.+.|+.-|..... ...++.+|+++|+-+++
T Consensus 63 ~~G-i~l~~l----------~~~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~ 120 (225)
T 3l7o_A 63 ALG-IPLKSI----------DEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120 (225)
T ss_dssp HHT-CCBCCG----------GGSSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEG
T ss_pred ccC-ceEEec----------CcccccCEEEEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEec
Confidence 222 221111 113479999999999999999977654333 36677889988877765
No 35
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=94.72 E-value=0.03 Score=58.94 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=98.3
Q ss_pred HHHHHhhcCCCCeeccc--cCchHHHHHHhhhcc----CCeeEEeCC-cchh-HHH-HHHhcCcccccccccCCceeeec
Q psy2323 266 NHICDELLEDEATLQIG--LGKIPEAILSNIKHQ----INLGVHTEL-LTPG-VIK-LFNSGVINNSKKSIDRGQITATL 336 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlG--iG~ip~aV~~~L~~~----~~lgihtE~-~~d~-~~~-l~e~G~i~~~~k~~~~g~~~~~~ 336 (509)
+-++. +|+||++|-+| .| .|.++...|.++ +||.+.+-. ..+. +++ .+ .|.++. ..|
T Consensus 10 eeAv~-~IkdG~tI~~ggf~g-~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~-----------~~~ 75 (436)
T 2oas_A 10 LEAVS-LIRSGETLWTHSMGA-TPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSL-LGHLRH-----------RCF 75 (436)
T ss_dssp HHHHT-TCCTTCEEEECCBTT-CCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGG-TTTEEE-----------EES
T ss_pred HHHHh-hCCCCCEEEECCccC-cHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHh-cCcEEE-----------eec
Confidence 45567 89999999887 56 799999999764 799987743 2222 111 11 222221 123
Q ss_pred cCCChhhHHHhhcCCcEEEeeccccCcHHHHhc--cCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccC
Q psy2323 337 LLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ--NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTG 414 (509)
Q Consensus 337 ~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~--~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s 414 (509)
.+ ...+-+.+..+ ...+.|..+++-|+.++. ++-++|+..+-..|..||++- +. ..+=..++++.|+++
T Consensus 76 ~~-~~~lr~~i~~G-~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~---~~----s~~~~~~~a~aA~~V 146 (436)
T 2oas_A 76 FG-GVPTRPLLQSG-DADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSL---GI----SVEATLAACQVAGKI 146 (436)
T ss_dssp SC-CTTTHHHHHTT-SSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEEC---TT----BCTTHHHHHHHCSEE
T ss_pred CC-CHHHHHHHHcC-CCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEE---ec----CcCcHHHHHHhcCeE
Confidence 33 33466666555 468889999998988764 667899999999999999864 22 225567777777553
Q ss_pred CCCCCcEEEEeecccCCCCccceeccccCCCccccCCCceEEEE
Q psy2323 415 LDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVV 458 (509)
Q Consensus 415 ~~~~g~~ii~~~st~~k~G~skIV~~~~~g~~vt~~~~~v~~vV 458 (509)
|+- +-++||++. | ....+..+||+||
T Consensus 147 -------Ive---------Vn~~vP~~~-g-~~~I~~~~VD~VV 172 (436)
T 2oas_A 147 -------IAH---------INPQMPRTH-G-DGFIHIDRFAAVY 172 (436)
T ss_dssp -------EEE---------ECTTSCCCE-E-SCEEEGGGCSEEE
T ss_pred -------EEE---------EcCCCCCCC-C-CCcCChHHeEEEE
Confidence 432 234566543 2 1235566799887
No 36
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.37 Score=47.18 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCHHHHhh-cCC--CCCEEEEcCCCCChHHHHHHHHHhHhcCCCc----ceEEEEeecCCCCCCCCCCCCcEEEeccccC
Q psy2323 17 ISKEQAVQ-FIK--PNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQ----GVTVLDVFSLYPYDNMTPEDDCVRRLSFFVS 89 (509)
Q Consensus 17 ~SaeEA~~-~I~--dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~k----dLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~ 89 (509)
.=++.|++ +|+ |||+|+++.++ +-..++++|.++.+.+.++ +++++++..
T Consensus 24 ~IA~~Aa~~~I~~~dg~~IgLgsGS-T~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~---------------------- 80 (264)
T 1xtz_A 24 AAAYRAVDENLKFDDHKIIGIGSGS-TVVYVAERIGQYLHDPKFYEVASKFICIPTGF---------------------- 80 (264)
T ss_dssp HHHHHHHHHHCCTTTCCEEEECCCS-STHHHHHHHHHHHTSTTTHHHHTTCEEEESSH----------------------
T ss_pred HHHHHHHHhccCCCCCCEEEEcChH-HHHHHHHHHhHhhhccccccccCCEEEECCcH----------------------
Confidence 34677888 999 99999999875 5788999998764211221 477765311
Q ss_pred HHHHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccC-cchhHH-HHhccCcEEEEecc
Q psy2323 90 PYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTN-VVELLS-VIRGSKRVIAQIND 163 (509)
Q Consensus 90 ~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s-~~~~~~-~a~aAk~VIvEVn~ 163 (509)
.......+..+..+..+ ....+|+||+-+...|.++++.-+.. +..... ++.+|+++|+-+++
T Consensus 81 -~~a~~l~~~gi~v~~l~----------~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~ 145 (264)
T 1xtz_A 81 -QSRNLILDNKLQLGSIE----------QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADS 145 (264)
T ss_dssp -HHHHHHHHTTCEECCTT----------TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEG
T ss_pred -HHHHHHHHCCCeEEEeh----------hcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEc
Confidence 01111111122222210 12468999999999998877766543 333333 56788887777754
No 37
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=93.00 E-value=0.35 Score=47.09 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.-++.|+++|+|||+|++|.++ +-..++++|.++.++ + -+++++++. -..++..
T Consensus 30 ~iA~~A~~~V~dg~vIgLGsGS-T~~~~i~~L~~~~~~-g-l~ItvVttS-----------------------~~ta~~l 83 (255)
T 3hhe_A 30 MAALKALEFVEDDMRLGIGSGS-TVNEFIPLLGERVAN-G-LRVTCVATS-----------------------QYSEQLC 83 (255)
T ss_dssp HHHHHHHTTCCTTEEEEECCSH-HHHHHHHHHHHHHHT-T-CCEEEEESS-----------------------HHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCcH-HHHHHHHHHHHhhcc-C-CcEEEEcCC-----------------------HHHHHHH
Confidence 3467788999999999998764 567899999887542 2 256655331 1112222
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcch--hHHHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVE--LLSVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~--~~~~a~aAk~VIvEVn~ 163 (509)
.+-.+..++. .....+|++|.-+-..|.+.|+.-|..... ...++.+|+++|+-+++
T Consensus 84 ~~~GI~l~~l----------~~~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~ 142 (255)
T 3hhe_A 84 HKFGVPISTL----------EKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADE 142 (255)
T ss_dssp HHTTCCBCCT----------TTCCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEG
T ss_pred HHcCCcEEec----------ccccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeC
Confidence 2222222221 112369999999999999998876554332 46678889988877765
No 38
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=92.33 E-value=0.34 Score=47.39 Aligned_cols=120 Identities=11% Similarity=-0.030 Sum_probs=67.2
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeec-CCCCCCC---CCC-CCcEE-EeccccCHHH
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFS-LYPYDNM---TPE-DDCVR-RLSFFVSPYT 92 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~-~g~~~~~---~~~-~~~v~-~~s~f~~~~~ 92 (509)
+.-|+..|+||++|.+|-+ .|....+.+.+. +-++|++.+-.+ ++..+.. ... .+... ..+++-++..
T Consensus 12 a~~aA~~i~dG~~v~lGiG--iP~~va~~~~~~----~~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~~~a~~~~~~~~~ 85 (260)
T 1poi_B 12 AVTIAKQIKNGQVVTVGTG--LPLIGASVAKRV----YAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVRF 85 (260)
T ss_dssp HHHHHTTCCTTCEEECCSS--HHHHHHHHHHHT----TCTTCEEEETTTEEEECCSSCCSSTTCHHHHTSEEEECCHHHH
T ss_pred HHHHHHhCCCCCEEEeCCC--HHHHHHHHHHHh----cCCCEEEEEeCceecCcccCcccCccCCCcEeehhhhcCHHHH
Confidence 3446678999999999855 787766665443 347888876211 1111110 000 00000 1122222221
Q ss_pred HHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEe---cc---------CcchhHHHHhccCcEEEE
Q psy2323 93 RKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSL---GT---------NVVELLSVIRGSKRVIAQ 160 (509)
Q Consensus 93 r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~sl---g~---------s~~~~~~~a~aAk~VIvE 160 (509)
-....+ .|++. .++|++|+-+...|.+||++. |. ..+=..+++..|+++|+-
T Consensus 86 fd~~~~--------------~~~~~--g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D~~~~A~~~iv~ 149 (260)
T 1poi_B 86 VGFEIN--------------EYLHK--ANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYSNTIIMM 149 (260)
T ss_dssp HHHHHH--------------HHHHT--CCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHHHHHHSCEEEEC
T ss_pred hcccch--------------hhhhc--CCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHHHHhCCCEEEEE
Confidence 111110 23553 478999999999999999972 21 112268889999987765
No 39
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=92.10 E-value=0.4 Score=45.70 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=66.0
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEE-EEeecCCCCCCCCCCCCcEEEeccccCHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTV-LDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKY 95 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl-~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~ 95 (509)
.=++.|+++|+|||+|+++.++ +...++++|.++ . .++|+ +++.. . . ...+
T Consensus 9 ~IA~~Aa~~I~dg~~I~LdsGS-T~~~la~~L~~~-~----~~itv~VTnS~-~------------------~---a~~l 60 (219)
T 1m0s_A 9 LAAQAALQYVKADRIVGVGSGS-TVNCFIEALGTI-K----DKIQGAVAASK-E------------------S---EELL 60 (219)
T ss_dssp HHHHHHGGGCCTTSEEEECCSH-HHHHHHHHHHTT-G----GGSCEEEESSH-H------------------H---HHHH
T ss_pred HHHHHHHHhCCCCCEEEEcChH-HHHHHHHHHhcc-C----CCEEEEECChH-H------------------H---HHHH
Confidence 3467899999999999999764 467788888654 1 16777 65411 0 0 0001
Q ss_pred HHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhH--HHHhccCcEEEEecc
Q psy2323 96 VNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELL--SVIRGSKRVIAQIND 163 (509)
Q Consensus 96 i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~--~~a~aAk~VIvEVn~ 163 (509)
.+.| ++.+. +. ....+|+||+-+...|.+.++.-+....... .++.+|+++|+-+++
T Consensus 61 ~~~g-i~vi~---------l~-~~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~ 119 (219)
T 1m0s_A 61 RKQG-IEVFN---------AN-DVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDS 119 (219)
T ss_dssp HHTT-CCBCC---------GG-GCSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEG
T ss_pred HhCC-CeEEE---------eC-ccccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 1111 11111 01 1247999999999999877666554333333 355688888877765
No 40
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=91.63 E-value=0.41 Score=45.79 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=73.4
Q ss_pred ccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHH
Q psy2323 15 ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRK 94 (509)
Q Consensus 15 Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~ 94 (509)
|..-+++|+++|+|||.|.+|.++ +...++++|+++..+..+ +++.+. .+-..++
T Consensus 8 K~~aa~~A~~~V~~gmvvGlGTGS-Tv~~~i~~L~~~~~~~~l-~i~~V~-----------------------tS~~t~~ 62 (228)
T 4gmk_A 8 KQLVGTKAVEWIKDGMIVGLGTGS-TVKYMVDALGKRVNEEGL-DIVGVT-----------------------TSIRTAE 62 (228)
T ss_dssp HHHHHHHHGGGCCTTCEEEECCSH-HHHHHHHHHHHHHHHHCC-CCEEEE-----------------------SSHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECchH-HHHHHHHHHHHHHhhcCC-cEEEEe-----------------------CcHHHHH
Confidence 446789999999999999999875 478899999998652222 222211 2222333
Q ss_pred HHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 95 YVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 95 ~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
...+--+...+. . ....+|++|=-+-..|.+.|+.=|.... ...-+|.+|++.|+-+++
T Consensus 63 ~a~~~Gi~l~~l---------~-~~~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~ 123 (228)
T 4gmk_A 63 QAKSLGIVIKDI---------D-EVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDE 123 (228)
T ss_dssp HHHHTTCCBCCG---------G-GSSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEG
T ss_pred HHHHcCCceeCh---------H-HCCccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEecc
Confidence 333322222221 1 1236899999999999999988765443 356688888866555554
No 41
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=91.41 E-value=0.31 Score=46.58 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=69.0
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEE-EEeecCCCCCCCCCCCCcEEEeccccCHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTV-LDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKY 95 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl-~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~ 95 (509)
.=++.|+++|+|||+|++|.++ +-..++++|.++ .+++++ +++. + ..++.
T Consensus 15 ~iA~~A~~~V~~g~~IglgsGS-T~~~~i~~L~~~-----~~~itv~VtnS-------------------~----~~a~~ 65 (224)
T 3kwm_A 15 LAATEAAKSITTEITLGVGTGS-TVGFLIEELVNY-----RDKIKTVVSSS-------------------E----DSTRK 65 (224)
T ss_dssp HHHHHHHTTCCSSEEEEECCSH-HHHHHHHHGGGC-----TTTEEEEEESC-------------------H----HHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCcH-HHHHHHHHHHhh-----cCceEEEECCc-------------------H----HHHHH
Confidence 4567888999999999998764 456777777654 246776 4321 1 11111
Q ss_pred HHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcch--hHHHHhccCcEEEEecc
Q psy2323 96 VNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVE--LLSVIRGSKRVIAQIND 163 (509)
Q Consensus 96 i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~--~~~~a~aAk~VIvEVn~ 163 (509)
..+-.+...+ +.+ ...+|+||.-+...|.++++.-|..... ...++.+|+++|+-+++
T Consensus 66 l~~~gi~l~~-----l~~-----~~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~ 125 (224)
T 3kwm_A 66 LKALGFDVVD-----LNY-----AGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDE 125 (224)
T ss_dssp HHHTTCCBCC-----HHH-----HCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEG
T ss_pred HHHcCCeEEe-----cCc-----cccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeC
Confidence 1111121111 111 1468999999999999999877654433 46677889988877765
No 42
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=91.38 E-value=0.15 Score=48.61 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=43.9
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEE-EEeecCCCCCCCCCCCCcEEEeccccCHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTV-LDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKY 95 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl-~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~ 95 (509)
.=++.|+++|+|||+|+++.++ +...++++|.++ . .++|+ +++. ..-...+.. . .+.....
T Consensus 9 ~IA~~Aa~lI~dg~~I~LdsGS-T~~~la~~L~~~-~----~~itv~VTnS-~~~a~~l~~-~-gi~vi~l--------- 70 (219)
T 1o8b_A 9 AVGWAALQYVQPGTIVGVGTGS-TAAHFIDALGTM-K----GQIEGAVSSS-DASTEKLKS-L-GIHVFDL--------- 70 (219)
T ss_dssp --------------CEEECCSC-C--------------------CCEEESC-CC--------------CCG---------
T ss_pred HHHHHHHHhCCCCCEEEEcChH-HHHHHHHHHhcc-C----CCEEEEECCc-HHHHHHHHh-C-CCeEEEe---------
Confidence 4578899999999999999775 467778888654 1 16777 6542 111111110 0 1111110
Q ss_pred HHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhH--HHHhccCcEEEEecc
Q psy2323 96 VNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELL--SVIRGSKRVIAQIND 163 (509)
Q Consensus 96 i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~--~~a~aAk~VIvEVn~ 163 (509)
.....+|+||+-+...|.++++..+....... .++.+|+++|+-+++
T Consensus 71 ---------------------~~~~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~ 119 (219)
T 1o8b_A 71 ---------------------NEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADA 119 (219)
T ss_dssp ---------------------GGCSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEG
T ss_pred ---------------------CccCcCCEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 01137899999999999888877654433333 356688888877765
No 43
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=91.34 E-value=0.14 Score=53.85 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHhhcCCCCeeccc--cCchHHHHHHhhhcc----CCeeEEeCCcchhHHHHHHhcCcccccccccCCceeeeccCC
Q psy2323 266 NHICDELLEDEATLQIG--LGKIPEAILSNIKHQ----INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLG 339 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlG--iG~ip~aV~~~L~~~----~~lgihtE~~~d~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G 339 (509)
+-++. +|+||++|-+| .| -|.++...|.++ +||.+++-.-. +-..+.+.|...... ..++.+|
T Consensus 19 eEAv~-~IkdGd~V~~~g~~g-~P~~L~~ALa~r~~~l~~v~l~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~ 87 (434)
T 3eh7_A 19 EEAVK-HIKNGERVALSHAAG-VPQSCVDALVQQADLFQNVEIYHMLCL-GEGKYMAPEMAPHFR--------HITNFVG 87 (434)
T ss_dssp HHHHT-TCCTTCEEEECCGGG-CCHHHHHHHHHSTTTC--CEEECCBCT-TCC---------------------------
T ss_pred HHHHH-hCCCcCEEEECCccC-CHHHHHHHHHHhHhhcCCeEEEEeccC-CchhhcChhhhCeEE--------EecCcCC
Confidence 34567 99999998886 55 688888888764 68888774322 112345555443211 1223333
Q ss_pred ChhhHHHhhcCCcEEEeeccccCcHHHHhc--cCccEEeeceeeeecCCCccccCCCCccccccccHHHHhccccc
Q psy2323 340 DKPLYDFVHNNELVQMKRGTYSNDPAIIRQ--NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALT 413 (509)
Q Consensus 340 ~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~--~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~ 413 (509)
..+-+.++++ .+.+.|+-+..-|..++. ++-++|+..+...|..||++- |. ..+=..++++.|++
T Consensus 88 -~~~r~~i~~G-~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~---g~----s~~~~~~~~~~A~~ 154 (434)
T 3eh7_A 88 -GNSRKAVEEN-RADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF---GV----SCDYSKPAAESAHL 154 (434)
T ss_dssp ------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC---TT----BCTTHHHHHHHCSE
T ss_pred -HHHHHHHHCC-CccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe---cC----ccchHHHHHHhCCe
Confidence 3344444433 456778888888988876 567999999999999999963 32 23445566666554
No 44
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=91.25 E-value=0.46 Score=50.95 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=84.4
Q ss_pred HHHHHHhhcCCCCeeccc----cCchHHHHHHhhhcc----------CCeeEEeCCc-ch-hHHHHHHhcCccccccccc
Q psy2323 265 ANHICDELLEDEATLQIG----LGKIPEAILSNIKHQ----------INLGVHTELL-TP-GVIKLFNSGVINNSKKSID 328 (509)
Q Consensus 265 a~~va~~~i~dg~~lqlG----iG~ip~aV~~~L~~~----------~~lgihtE~~-~d-~~~~l~e~G~i~~~~k~~~ 328 (509)
|+-++. +|+||++|-+| .| .|.++..+|.++ .+|.+++... .+ ....+.+.|.+...
T Consensus 17 aeEAv~-~IkdGd~V~~~Gf~~~G-~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~----- 89 (514)
T 4eu9_A 17 AETASE-LIKHGDVVGTSGFTGAG-YPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFR----- 89 (514)
T ss_dssp HHHHHT-TCCTTCEEEECCBTTBS-CCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEE-----
T ss_pred HHHHHH-hCCCCCEEEECCCCCCc-CHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEE-----
Confidence 344567 99999999875 45 677777777532 4577766443 22 34567788877542
Q ss_pred CCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhc---cCccEEeeceeeeecCCCccccCCCCccccccccHH
Q psy2323 329 RGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ---NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 405 (509)
Q Consensus 329 ~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~---~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~ 405 (509)
.+|.+| ..+-+.++. ..+++.|.-++.-|..++. ++-++|+..+...|..||++-. . .+|=..
T Consensus 90 -----~~~~~~-~~~R~~i~~-G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g---~----sv~~~~ 155 (514)
T 4eu9_A 90 -----SPFNTD-ATMRNRINA-GETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPT---S----SVGNSQ 155 (514)
T ss_dssp -----ESCCCC-HHHHHHHHT-TSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEEC---S----BCBTHH
T ss_pred -----EecCCC-HHHHHHHHc-CCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEec---C----CcchHH
Confidence 244444 333344444 4688999999998976654 3568999999999999998632 1 224455
Q ss_pred HHhcccccC
Q psy2323 406 DFMRGALTG 414 (509)
Q Consensus 406 Df~~gA~~s 414 (509)
.+++.|++.
T Consensus 156 ~~~~~A~~V 164 (514)
T 4eu9_A 156 TFLNLAEKV 164 (514)
T ss_dssp HHHHHCSEE
T ss_pred HHHHhCCeE
Confidence 566666664
No 45
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=89.48 E-value=0.45 Score=50.17 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=85.9
Q ss_pred HHHHHHhhcCCCCeeccc--cCchHHHHHHhhhc------cCCeeEEeCCcchhHHH-HHHhcCcccccccccCCceeee
Q psy2323 265 ANHICDELLEDEATLQIG--LGKIPEAILSNIKH------QINLGVHTELLTPGVIK-LFNSGVINNSKKSIDRGQITAT 335 (509)
Q Consensus 265 a~~va~~~i~dg~~lqlG--iG~ip~aV~~~L~~------~~~lgihtE~~~d~~~~-l~e~G~i~~~~k~~~~g~~~~~ 335 (509)
|+-++. +|+||++|=+| .| .|.++...|.+ .++|.+++-.-.-...+ ..+...-.. ....+
T Consensus 29 aeEAv~-lIkdGdtV~~gG~~g-~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~--------~~~~~ 98 (455)
T 3qli_A 29 PEEAVS-SIASGSHLSMGMFAA-EPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNR--------IKPYS 98 (455)
T ss_dssp HHHHTT-TCCTTCEEEECSGGG-SCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTT--------EEEEE
T ss_pred HHHHHH-hCCCCCEEEECCccc-CHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCc--------EEEee
Confidence 556778 99999998877 55 78888888854 36888877442221221 111111111 11345
Q ss_pred ccCCChhhHHHhhcC------CcEEEeeccccCcHHHHhc-cCccEEeeceeeeecCCCccccCCCCccccccccHHHHh
Q psy2323 336 LLLGDKPLYDFVHNN------ELVQMKRGTYSNDPAIIRQ-NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFM 408 (509)
Q Consensus 336 ~~~G~~~ly~~i~~n------~~~~~~~~~~~n~p~~i~~-~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~ 408 (509)
|.+| ...-+.++.. ..+++.|.-|++-|..++. ++-++++..+...|..||++- |. ..|=..+++
T Consensus 99 ~f~~-~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~---g~----s~~~~~~~a 170 (455)
T 3qli_A 99 MFVT-AVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSL---GV----GNDYSSRIA 170 (455)
T ss_dssp SSCC-HHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEEC---TT----BCBTHHHHH
T ss_pred CcCC-hhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEE---cc----CCCchHHHH
Confidence 6565 4344455433 2488999999999999865 455899999999999999863 32 225567888
Q ss_pred cccccC
Q psy2323 409 RGALTG 414 (509)
Q Consensus 409 ~gA~~s 414 (509)
+.|++.
T Consensus 171 ~~Ak~V 176 (455)
T 3qli_A 171 RSARRF 176 (455)
T ss_dssp HHSSEE
T ss_pred hhcCEE
Confidence 887764
No 46
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=88.73 E-value=1.8 Score=45.50 Aligned_cols=128 Identities=10% Similarity=0.028 Sum_probs=80.7
Q ss_pred HHHHHhhcCCCCeeccccCc-hHHHHHHhhhc----cCCeeEEeCCcc-h-hHHHHHHhcCcccccccccCCceeeeccC
Q psy2323 266 NHICDELLEDEATLQIGLGK-IPEAILSNIKH----QINLGVHTELLT-P-GVIKLFNSGVINNSKKSIDRGQITATLLL 338 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlGiG~-ip~aV~~~L~~----~~~lgihtE~~~-d-~~~~l~e~G~i~~~~k~~~~g~~~~~~~~ 338 (509)
+-++. +|++|++|-+|-+. -|.++...|.+ .+|+.+++-... + ...+---++.+. ..++.+
T Consensus 15 eeA~~-~ik~G~~v~~~~~~~~p~~l~~al~~~~~~l~~v~l~~~~s~~~~~~~~~~~~~~~~-----------~~~~~~ 82 (448)
T 3gk7_A 15 DEAVK-SIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFT-----------FEGWFT 82 (448)
T ss_dssp HHHGG-GCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEE-----------EEESSC
T ss_pred HHHHH-hCCCcCEEEECCCCCCHHHHHHHHHHHHHhhcCeEEEEeeccCCccccChHHhCcEE-----------EecCcC
Confidence 34566 99999998876431 56677777654 378988875321 1 000000011121 123334
Q ss_pred CChhhHHHhhcCCcEEEeeccccCcHHHHhc--cCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccC
Q psy2323 339 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ--NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTG 414 (509)
Q Consensus 339 G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~--~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s 414 (509)
| ..+-+.+++ ..+++.|.-+++-|..++. ++-++|+..+-..|..||++ +|. ..|=..++++.|++.
T Consensus 83 ~-~~~r~~i~~-G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s---~g~----s~~~~~~~a~~A~~V 151 (448)
T 3gk7_A 83 S-PSTRGSIAE-GHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCC---VGV----SSDYTMQAIKSAKIV 151 (448)
T ss_dssp C-TTTHHHHHH-TSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEE---CCS----BCBTHHHHHHHCSEE
T ss_pred C-HHHHhHHhC-CCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEE---ecC----CcChHHHHHHhCCeE
Confidence 3 334455543 3678889999999999886 56799999999999999994 332 235577788877764
No 47
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=87.07 E-value=1.7 Score=40.90 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=65.5
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeec---CCCCCCCCCCCCcEEEeccccCHHHHHH
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFS---LYPYDNMTPEDDCVRRLSFFVSPYTRKY 95 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~---~g~~~~~~~~~~~v~~~s~f~~~~~r~~ 95 (509)
+..|+..|+||++|.+|-+ .|..+.+.+. . .++++.+-.+ .++.+..... ..+.
T Consensus 6 a~raA~el~dG~~vnlGIG--iP~~va~~~~---~----~~v~l~~E~G~~g~~p~p~~~~~--------------d~~~ 62 (207)
T 3rrl_B 6 IKRAAKELKEGMYVNLGIG--LPTLVANEVS---G----MNIVFQSENGLLGIGAYPLEGSV--------------DADL 62 (207)
T ss_dssp HHHHHTTCCTTCEEEECTT--GGGGGGGGGS---S----SCCEEEETTTEEEECCCCCTTCC--------------CTTC
T ss_pred HHHHHHhCCCCCEEEECCC--hHHHHHHhcc---C----CcEEEEeccceecCcCCCCcccc--------------CHhH
Confidence 4568889999999999844 6776555443 1 3677765321 1121100000 0011
Q ss_pred HHcCCc--eeec--CCCChHH--HHHHccCCCCcEEEEEecCCCCCCcEEec---cC----cchhHHHHhccCcEEEEec
Q psy2323 96 VNTGAA--EYIP--IMLNDLP--MVFDRGYFSPDVALISVSPPDASGFVSLG---TN----VVELLSVIRGSKRVIAQIN 162 (509)
Q Consensus 96 i~~G~i--~f~P--~~ls~~~--~~l~~g~~~iDVAlI~vs~~De~Gn~slg---~s----~~~~~~~a~aAk~VIvEVn 162 (509)
++.|+. .+.| ..+++.. .+++ ..++|++++-+...|++||++-. .- .+=..++++.|+++|+-..
T Consensus 63 in~G~~~~t~~~~~~~~~~~~~F~~~~--gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d~~~~A~~vi~~~~ 140 (207)
T 3rrl_B 63 INAGKETITVVPGASFFNSADSFAMIR--GGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGAKKVIVIME 140 (207)
T ss_dssp BCTTSBBCCEEEEEEECCHHHHHHHHH--TTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHHHHHHSSEEEEECC
T ss_pred eecCCceeeecCCceeeCCHHHHHHHh--CCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHHHHhCCCEEEEEEe
Confidence 111211 0111 0112111 2344 34689999999999999998632 11 1225789999999887543
No 48
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=84.51 E-value=0.84 Score=43.40 Aligned_cols=48 Identities=8% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccC-CeeE-EeCCc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQI-NLGV-HTELL 307 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~-~lgi-htE~~ 307 (509)
+..++||+.+++ +|+||++|=+|-|+....++..|.+++ ++.+ -|-.+
T Consensus 5 ~~K~~IA~~Aa~-~I~dg~~I~LdsGST~~~la~~L~~~~~~itv~VTnS~ 54 (219)
T 1m0s_A 5 EMKKLAAQAALQ-YVKADRIVGVGSGSTVNCFIEALGTIKDKIQGAVAASK 54 (219)
T ss_dssp HHHHHHHHHHGG-GCCTTSEEEECCSHHHHHHHHHHHTTGGGSCEEEESSH
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEcChHHHHHHHHHHhccCCCEEEEECChH
Confidence 568999999999 999999999999999999999998654 6766 55444
No 49
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=83.31 E-value=6 Score=38.69 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred HHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHH-HHHHHH
Q psy2323 19 KEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPY-TRKYVN 97 (509)
Q Consensus 19 aeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~-~r~~i~ 97 (509)
++.++++|+||++|.+.+.++....+++++.++ -++++++..-+ .| ++.+.. .+++.+
T Consensus 100 a~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~-----~~~~~V~v~et-------rP---------~~qG~~~a~~L~~ 158 (276)
T 1vb5_A 100 ASIGAQLIDDGDVIITHSFSSTVLEIIRTAKER-----KKRFKVILTES-------SP---------DYEGLHLARELEF 158 (276)
T ss_dssp HHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHT-----TCCEEEEEECC-------TT---------TTHHHHHHHHHHH
T ss_pred HHHHHHHccCCCEEEEeCCChHHHHHHHHHHHc-----CCeEEEEEeCC-------Cc---------chhhHHHHHHHHH
Confidence 455778999999999888887777777776554 25688886422 12 111222 233334
Q ss_pred cC-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEE
Q psy2323 98 TG-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVS 139 (509)
Q Consensus 98 ~G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~s 139 (509)
.| .+.+++ -+.+..++. ++|.+|+-+....++|.+.
T Consensus 159 ~gI~vtli~--dsa~~~~m~----~vd~vivGAd~i~~nG~v~ 195 (276)
T 1vb5_A 159 SGIEFEVIT--DAQMGLFCR----EASIAIVGADMITKDGYVV 195 (276)
T ss_dssp TTCCEEEEC--GGGHHHHHT----TCSEEEECCSEECTTSCEE
T ss_pred CCCCEEEEc--HHHHHHHHc----cCCEEEEcccEEecCCCEe
Confidence 44 244544 233444442 5999999999999999764
No 50
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=83.21 E-value=1.7 Score=41.44 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc---C--C-eeEEeCCc
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ---I--N-LGVHTELL 307 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~---~--~-lgihtE~~ 307 (509)
.+..++||+.+++ +|+||++|=+|-|+....++..|.++ + + +.+-|..+
T Consensus 6 ~~~K~~IA~~Aa~-~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~ 60 (227)
T 1uj6_A 6 ESYKKEAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSR 60 (227)
T ss_dssp HHHHHHHHHHHHT-TCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSH
T ss_pred HHHHHHHHHHHHH-HCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcH
Confidence 4678999999999 99999999999999999999999764 2 3 77666554
No 51
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=83.18 E-value=1.2 Score=42.74 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc---C---CeeEEeCCc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ---I---NLGVHTELL 307 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~---~---~lgihtE~~ 307 (509)
+..++||+.+++ +|+||++|=+|-|+....++..|.++ + ++.+-|-.+
T Consensus 5 ~~K~~IA~~Aa~-~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~ 58 (229)
T 1lk5_A 5 EMKKIAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSY 58 (229)
T ss_dssp HHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSH
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcH
Confidence 568999999999 99999999999999999999999764 4 666655443
No 52
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=77.99 E-value=2.8 Score=39.96 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc-CCeeE-EeCC
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ-INLGV-HTEL 306 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~-~~lgi-htE~ 306 (509)
++..++||+.+++ +++||++|=+|-|+....++..|.++ +++.+ -|-.
T Consensus 10 ~~~K~~iA~~A~~-~V~~g~~IglgsGST~~~~i~~L~~~~~~itv~VtnS 59 (224)
T 3kwm_A 10 DELKKLAATEAAK-SITTEITLGVGTGSTVGFLIEELVNYRDKIKTVVSSS 59 (224)
T ss_dssp HHHHHHHHHHHHT-TCCSSEEEEECCSHHHHHHHHHGGGCTTTEEEEEESC
T ss_pred HHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHhhcCceEEEECCc
Confidence 4678899999999 99999999999999999999999886 46765 4433
No 53
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=77.89 E-value=2.5 Score=40.33 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccC-----CeeEEeCCc
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQI-----NLGVHTELL 307 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~-----~lgihtE~~ 307 (509)
+..++||+.+++ +|+||++|=+|-|+....++..|.++. ++.+-|-.+
T Consensus 5 ~~K~~iA~~A~~-~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l~itvVtnS~ 57 (226)
T 2pjm_A 5 DLKLKVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSF 57 (226)
T ss_dssp HHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSH
T ss_pred HHHHHHHHHHHH-HCCCCCEEEECCCHHHHHHHHHHHhhhhccCCcEEEEeCcH
Confidence 567899999999 999999999999999999999997742 566555443
No 54
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=77.85 E-value=5.2 Score=31.18 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=40.8
Q ss_pred CccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEe
Q psy2323 14 MELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDV 65 (509)
Q Consensus 14 ~Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~ 65 (509)
+|.++.+||.. +++=++|.++|+.+.|..+-++|.+++++++-+-..|+..
T Consensus 6 v~ei~~~qA~~-lq~~gtVsvsg~~~sp~D~~~~lskkAdekGA~~y~Ii~~ 56 (72)
T 4evu_A 6 VEELNKATAAM-MVPFDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQ 56 (72)
T ss_dssp CEECCHHHHTT-SCCSEEEEEEECCSSHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred eEEeCHHHHhh-CeeccEEEECCccCChHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 55689999975 5555699999999999999999999998666666666643
No 55
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=76.05 E-value=2.7 Score=40.47 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=68.5
Q ss_pred CCHHHHhhcCCC----CCEEEEcCCCCChHHHHHHHHHhHhcCCCcceE-EEEeecCCCCCCCCCCCCcEEEeccccCHH
Q psy2323 17 ISKEQAVQFIKP----NSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVT-VLDVFSLYPYDNMTPEDDCVRRLSFFVSPY 91 (509)
Q Consensus 17 ~SaeEA~~~I~d----GdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLt-l~~~~~~g~~~~~~~~~~~v~~~s~f~~~~ 91 (509)
.-++.|+++|+| ||+|++|.++ +-..++++|.++. ++++ ++++ +-.
T Consensus 17 ~aA~~A~~~V~d~~~~g~vIGLGtGS-T~~~~i~~L~~~~-----~~i~~~V~t-----------------------S~~ 67 (239)
T 3uw1_A 17 LVGEAAARYVTDNVPQGAVIGVGTGS-TANCFIDALAAVK-----DRYRGAVSS-----------------------SVA 67 (239)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSH-HHHHHHHHHHTTG-----GGSCEEEES-----------------------SHH
T ss_pred HHHHHHHHHhhccCcCCCEEEECccH-HHHHHHHHHHhhh-----ccceEEeCC-----------------------cHH
Confidence 456778888888 9999998764 4678888887762 2333 1211 111
Q ss_pred HHHHHHcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 92 TRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 92 ~r~~i~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
.++.+.+-.+...+ +. ....+|++|.-+-..|.+.|+.=|.... ...-++.+|++.|+-+++
T Consensus 68 t~~~~~~~Gi~l~~---------l~-~~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~ 131 (239)
T 3uw1_A 68 TTERLKSHGIRVFD---------LN-EIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADA 131 (239)
T ss_dssp HHHHHHHTTCCBCC---------GG-GCSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEG
T ss_pred HHHHHHHcCCcEEe---------cc-cccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEec
Confidence 22222222222221 11 1347999999999999999987765433 356677889977777755
No 56
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=74.74 E-value=2.5 Score=41.10 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc
Q psy2323 257 VTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 257 ~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~ 297 (509)
.++..++||+.+++ +|+||++|=+|-|+.-..++..|.++
T Consensus 24 ~~e~K~~iA~~A~~-~V~dg~vIgLGsGST~~~~i~~L~~~ 63 (255)
T 3hhe_A 24 VQQLKKMAALKALE-FVEDDMRLGIGSGSTVNEFIPLLGER 63 (255)
T ss_dssp HHHHHHHHHHHHHT-TCCTTEEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 34678899999999 99999999999999999999999774
No 57
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=74.28 E-value=4.2 Score=43.08 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=93.3
Q ss_pred HHHHHhhcCCCCeeccc-cC--chHHHHHHhhhc--cCCeeEEeCCcc-h--hHHHHHHhcCcccccccccCCceeeecc
Q psy2323 266 NHICDELLEDEATLQIG-LG--KIPEAILSNIKH--QINLGVHTELLT-P--GVIKLFNSGVINNSKKSIDRGQITATLL 337 (509)
Q Consensus 266 ~~va~~~i~dg~~lqlG-iG--~ip~aV~~~L~~--~~~lgihtE~~~-d--~~~~l~e~G~i~~~~k~~~~g~~~~~~~ 337 (509)
+-++. +|+||+||-+| +| ++|.++...|.+ .+||.+.+-.-. | ++=.|+.+|.+... ++++
T Consensus 8 ~eAv~-~I~DG~ti~~gGf~~~g~P~~li~al~~~~~kdLt~v~~~~g~~~~Gl~~L~~~g~v~r~---------i~s~- 76 (481)
T 3k6m_A 8 VEAVK-DIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRM---------ISSY- 76 (481)
T ss_dssp HHHHT-TCCTTCEEEECCBTTBTCCHHHHHHHHHHCCCSEEEECSCCCBTTBTTHHHHHTTCEEEE---------EESC-
T ss_pred HHHHh-hCCCCCEEEECCccccCcHHHHHHHHHHcCCCceEEEEeCCCCCcchHHHHHhCCCeeEE---------Eecc-
Confidence 34566 89999999876 22 389999999976 389997543211 2 47788899998753 3444
Q ss_pred CC-ChhhHHHhhcCC-cEEEeeccccCc---------H----------HHH-----------------------------
Q psy2323 338 LG-DKPLYDFVHNNE-LVQMKRGTYSND---------P----------AII----------------------------- 367 (509)
Q Consensus 338 ~G-~~~ly~~i~~n~-~~~~~~~~~~n~---------p----------~~i----------------------------- 367 (509)
+| +.++-+.+.++. .+++.|++..-. | .+-
T Consensus 77 ~g~~p~~~~~~~~g~ie~e~~pqG~la~~~RA~aaG~P~~~t~~glGT~v~~gg~~~~~~~~~~~~~~~~~~e~~~~~G~ 156 (481)
T 3k6m_A 77 VGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQ 156 (481)
T ss_dssp CCSCHHHHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTSHHHHSCCEEEECTTSSEEEECCCCCEEEETTE
T ss_pred cCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCceecccccCChhhcCCcccccCccccccccCCceEEEeECCE
Confidence 35 333434444443 344444331000 0 000
Q ss_pred -----hccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCCccceecccc
Q psy2323 368 -----RQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIK 442 (509)
Q Consensus 368 -----~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G~skIV~~~~ 442 (509)
..++-++|+.-+-..|.+||++-+.-... -...++..|+++ |+- +-+|||...
T Consensus 157 ~~l~~~~~~~DvAli~a~~aD~~GN~~~~~~~~~------~~~~~a~AA~~v-------Ive---------Ve~ivp~g~ 214 (481)
T 3k6m_A 157 HFILEEAIRGDFALVKAWKADQAGNVTFRKSARN------FNLPMCKAAETT-------VVE---------VEEIVDIGS 214 (481)
T ss_dssp EEEEEECCCEEEEEEEEEEEETTCCEECCGGGCT------THHHHTTSEEEE-------EEE---------EEEEECTTS
T ss_pred EEEEEeCCCCCEEEEEcCcCCCCceEEEeCccch------hhHHHHHhCCeE-------EEE---------Eeecccccc
Confidence 01223688888888999999875432111 124566655543 432 245666532
Q ss_pred C-CCccccCCCceEEEEc
Q psy2323 443 P-GAGVVCSRAHVQYVVT 459 (509)
Q Consensus 443 ~-g~~vt~~~~~v~~vVT 459 (509)
- ...|.+|.-.||+||-
T Consensus 215 ~~p~~v~ipgi~VD~VV~ 232 (481)
T 3k6m_A 215 FAPEDIHIPKIYVHRLVK 232 (481)
T ss_dssp SCGGGCSBCGGGCCEEEE
T ss_pred cCCCeEEecchheEEEEE
Confidence 1 1367788889999974
No 58
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=73.42 E-value=0.75 Score=43.76 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccC-CeeE
Q psy2323 259 EIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQI-NLGV 302 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~-~lgi 302 (509)
+..++||+.+++ +|+||++|=+|-|+....++..|.+++ ++.+
T Consensus 5 ~~K~~IA~~Aa~-lI~dg~~I~LdsGST~~~la~~L~~~~~~itv 48 (219)
T 1o8b_A 5 ELKKAVGWAALQ-YVQPGTIVGVGTGSTAAHFIDALGTMKGQIEG 48 (219)
T ss_dssp -------------------CEEECCSCC---------------CC
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEcChHHHHHHHHHHhccCCCEEE
Confidence 467999999999 999999999999999999999997643 4443
No 59
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=73.15 E-value=3.9 Score=38.94 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~ 297 (509)
++..++||+.+++ +++||++|=+|-|+....++..|.++
T Consensus 2 ~~~K~~iA~~A~~-~V~dg~vIgLGsGST~~~~i~~L~~~ 40 (225)
T 3l7o_A 2 EELKKIAGVRAAQ-YVEDGMIVGLGTGSTAYYFVEEVGRR 40 (225)
T ss_dssp CHHHHHHHHHHHT-TCCTTCEEEECCSTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 3567899999999 99999999999999999999999763
No 60
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=71.44 E-value=1.8 Score=41.27 Aligned_cols=111 Identities=12% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHHHHHH
Q psy2323 17 ISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYV 96 (509)
Q Consensus 17 ~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~r~~i 96 (509)
.-+++|+++|+|||.|++|.++ +...++++|+++.++. ++++... -.+-..+...
T Consensus 9 ~aa~~A~~~V~~gmvvGlGTGS-Tv~~~I~~L~~~~~~~---~l~i~~v---------------------~tS~~t~~~a 63 (226)
T 3ixq_A 9 KVAKEAVKLVKDGMVIGLGTGS-TAALFIRELGNRIREE---ELTVFGI---------------------PTSFEAKMLA 63 (226)
T ss_dssp HHHHHHGGGCCTTCEEEECCSH-HHHHHHHHHHHHHHHH---TCCCEEE---------------------ESSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEeCcHH-HHHHHHHHHHHhhhhc---CCeeEee---------------------cccHHHHHHH
Confidence 5688999999999999999875 5788999999886521 2222211 0122233333
Q ss_pred HcCCceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCC-cEEeccCcc--hhHHHHhccCcEEEEecc
Q psy2323 97 NTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASG-FVSLGTNVV--ELLSVIRGSKRVIAQIND 163 (509)
Q Consensus 97 ~~G~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~G-n~slg~s~~--~~~~~a~aAk~VIvEVn~ 163 (509)
.+..+...+. . ..++|++|=-+-..|+.+ |+.=|.... ...-+|.+|++.|+-+++
T Consensus 64 ~~~gi~l~~l---------~--~~~iDl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~ 122 (226)
T 3ixq_A 64 MQYEIPLVTL---------D--EYDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDE 122 (226)
T ss_dssp HHTTCCBCCT---------T--TCCCSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEG
T ss_pred HhcCCCcccc---------c--cccccEEEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEecc
Confidence 3322322221 1 124899987766665433 555454333 456688889976666554
No 61
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=69.75 E-value=31 Score=34.65 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhcCCCCee-ccccCchHHHHHHhhhc-cCCeeE-EeCCcc--hh---HHHHHHhcCcccccccccCC
Q psy2323 259 EIDSAIANHICDELLEDEATL-QIGLGKIPEAILSNIKH-QINLGV-HTELLT--PG---VIKLFNSGVINNSKKSIDRG 330 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~l-qlGiG~ip~aV~~~L~~-~~~lgi-htE~~~--d~---~~~l~e~G~i~~~~k~~~~g 330 (509)
...++||++.+. +|+||++| -.|--+...+++..+.+ .+.+.+ .+|.-. .| ...|.+.|+=.-
T Consensus 126 ~~~~~I~~~g~~-~I~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vt-------- 196 (338)
T 3a11_A 126 KALERIGEFGAK-RIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVI-------- 196 (338)
T ss_dssp HHHHHHHHHHHT-TCCTTCEEEECSCCHHHHHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEE--------
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEE--------
Confidence 457899999999 99999754 33443344444444433 356664 355422 12 345555543110
Q ss_pred ceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCCCCccccccccHHHHhcc
Q psy2323 331 QITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRG 410 (509)
Q Consensus 331 ~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~~Df~~g 410 (509)
.++-.+.|. ++.+. +..|.||=-|=..|.+.+ ++|+.+ .+.-
T Consensus 197 -lI~Dsa~~~-------------------------~M~~V--d~VivGAd~V~anG~v~N-KiGT~~---------lAl~ 238 (338)
T 3a11_A 197 -YVVDSAARH-------------------------YMKMT--DKVVMGADSITVNGAVIN-KIGTAL---------IALT 238 (338)
T ss_dssp -EECGGGTTT-------------------------TGGGC--SEEEECCSEECTTSCEEE-ETTHHH---------HHHH
T ss_pred -EEehHHHHH-------------------------HHHhC--CEEEECccEEecCCCEee-cccHHH---------HHHH
Confidence 001111111 11122 567778777777887753 566665 6666
Q ss_pred cccCCCCCCcEEEEee
Q psy2323 411 ALTGLDGKGKAILALP 426 (509)
Q Consensus 411 A~~s~~~~g~~ii~~~ 426 (509)
|+.- |+.++++.
T Consensus 239 Ak~~----~vPfyV~a 250 (338)
T 3a11_A 239 AKEH----RVWTMIAA 250 (338)
T ss_dssp HHHT----TCEEEEEC
T ss_pred HHHc----CCCEEEec
Confidence 6666 67776653
No 62
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=69.23 E-value=19 Score=36.72 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeec----c------ccCchHHHHHHhhhcc-CCeeE-EeCC
Q psy2323 259 EIDSAIANHICDELLEDEATLQ----I------GLGKIPEAILSNIKHQ-INLGV-HTEL 306 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lq----l------GiG~ip~aV~~~L~~~-~~lgi-htE~ 306 (509)
...++||++.++ +|+||++|= . |.| ...++...+.++ +.+.+ .+|.
T Consensus 158 ~~~~~I~~~g~~-~I~~g~~ILThcnsg~Lat~g~g-Tal~~l~~A~~~gk~~~V~v~Et 215 (374)
T 2yvk_A 158 ETCRLIGQNALQ-LFKKGDRIMTICNAGSIATSRYG-TALAPFYLAKQKDLGLHIYACET 215 (374)
T ss_dssp HHHHHHHHHHGG-GCCTTCEEEECSCCSTTTSSSSC-STTHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEecCCCccccCCCc-HHHHHHHHHHHcCCEEEEEEeCC
Confidence 457889999999 999997542 2 566 344555555443 56664 3553
No 63
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=68.96 E-value=4.1 Score=39.28 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhcc---C---CeeEEeCC
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ---I---NLGVHTEL 306 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~---~---~lgihtE~ 306 (509)
++..++||+.+++.+|+||++|=+|-|+....++..|.++ + +|.+-|-.
T Consensus 10 ~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS 64 (244)
T 2f8m_A 10 DSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTS 64 (244)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCc
Confidence 4567899999987678999999999999999999999764 4 55554433
No 64
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=65.29 E-value=37 Score=33.81 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=55.3
Q ss_pred HHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHHH-HHHHHc
Q psy2323 20 EQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYT-RKYVNT 98 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~~-r~~i~~ 98 (509)
+.++++|+||++|.+.++++.-..++....++ -++++++..-+ .| ++.|..+ +++.+.
T Consensus 113 ~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~-----gk~~~V~v~Es-------rP---------~~qG~~la~~L~~~ 171 (315)
T 3ecs_A 113 DLCHTFIKDGATILTHAYSRVVLRVLEAAVAA-----KKRFSVYVTES-------QP---------DLSGKKMAKALCHL 171 (315)
T ss_dssp HHHGGGCCTTEEEEECSCCHHHHHHHHHHHTT-----TCCEEEEEECC-------TT---------TTHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHc-----CCeEEEEEecC-------CC---------cchHHHHHHHHHHc
Confidence 44668999999999998887555555443332 25677774422 11 1222223 334444
Q ss_pred C-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEE
Q psy2323 99 G-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVS 139 (509)
Q Consensus 99 G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~s 139 (509)
| .+.+++- +.+..++ . ++|.+++-+...-++|.+.
T Consensus 172 gI~vtli~D--sa~~~~m-~---~vd~VivGAd~i~~nG~v~ 207 (315)
T 3ecs_A 172 NVPVTVVLD--AAVGYIM-E---KADLVIVGAEGVVENGGII 207 (315)
T ss_dssp TCCEEEECG--GGHHHHG-G---GCSEEEEECSEECTTSCEE
T ss_pred CCCEEEEeh--hHHHHHH-H---hCCEEEECceEEecCCCee
Confidence 4 2334443 3333333 2 5899999999999999864
No 65
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=60.76 E-value=19 Score=35.93 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcCCCCee-ccccCchHHHHHHhhhc-cCCeeEE-eCC
Q psy2323 259 EIDSAIANHICDELLEDEATL-QIGLGKIPEAILSNIKH-QINLGVH-TEL 306 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~l-qlGiG~ip~aV~~~L~~-~~~lgih-tE~ 306 (509)
..+++||++.++ +|+||++| -.|-.+.-.+++..+.+ .+++.++ +|.
T Consensus 106 ~a~~~I~~~~~~-~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~Es 155 (315)
T 3ecs_A 106 LSRNKIADLCHT-FIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTES 155 (315)
T ss_dssp THHHHHHHHHGG-GCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred HHHHHHHHHHHH-HcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 458999999999 99999754 44555444444443333 3566643 443
No 66
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=58.97 E-value=54 Score=33.10 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeec----c------ccCchHHHHHHhhhcc-CCeeE-EeCC
Q psy2323 259 EIDSAIANHICDELLEDEATLQ----I------GLGKIPEAILSNIKHQ-INLGV-HTEL 306 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lq----l------GiG~ip~aV~~~L~~~-~~lgi-htE~ 306 (509)
..+++||++.++ +|+||++|= . |.| ...++...+.++ +.+.+ .+|.
T Consensus 131 ~~~~~I~~~g~~-~I~~g~~ILThcnsg~lat~g~g-tal~~l~~A~~~gk~~~V~v~Et 188 (351)
T 1t5o_A 131 ERNRKMGEYGAE-LLEDGDVVLTYCNAGRLATVDWG-TALGVVRSAVEQGKEIRVIACET 188 (351)
T ss_dssp HHHHHHHHHHHT-TCCTTCEEEECSCCSSSSSSSSC-SHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEecCCccccccCCC-hHHHHHHHHHHCCCEEEEEEeCC
Confidence 457899999999 999997643 2 567 444555554443 66664 3553
No 67
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=58.73 E-value=9.6 Score=37.09 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhhcC--CCCeeccccCchHHHHHHhhhcc
Q psy2323 257 VTEIDSAIANHICDELLE--DEATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 257 ~~~~~~~Ia~~va~~~i~--dg~~lqlGiG~ip~aV~~~L~~~ 297 (509)
..+..++||+.+++++|+ ||++|=+|-|+....++..|.++
T Consensus 18 ~~~~K~~IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~ 60 (264)
T 1xtz_A 18 LEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQY 60 (264)
T ss_dssp -CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHh
Confidence 467899999999965889 99999999999999999999764
No 68
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=54.87 E-value=64 Score=32.45 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeec----------cccCchHHHHHHhhhc-cCCeeE-EeCC
Q psy2323 259 EIDSAIANHICDELLEDEATLQ----------IGLGKIPEAILSNIKH-QINLGV-HTEL 306 (509)
Q Consensus 259 ~~~~~Ia~~va~~~i~dg~~lq----------lGiG~ip~aV~~~L~~-~~~lgi-htE~ 306 (509)
...++|+++.++ +|+||++|= .|.| ...++...+.+ .+.+.+ .+|.
T Consensus 133 ~~~~~I~~~g~~-~I~~g~~ILThcns~~lat~~~g-tvl~~l~~A~~~gk~~~V~v~Et 190 (347)
T 1t9k_A 133 EVNKAIGKNGAQ-LIKDGSTILTHCNAGALATVDYG-TALGVIRAAVESGKRIRVFADET 190 (347)
T ss_dssp HHHHHHHHHHHT-TSCTTEEEEECSCCSGGGSSSSC-SHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEecCCCccccCCcc-HHHHHHHHHHHCCCeEEEEEeCC
Confidence 457889999999 999997531 2466 44455555544 366664 3553
No 69
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=44.14 E-value=16 Score=34.61 Aligned_cols=38 Identities=13% Similarity=0.374 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhc
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKH 296 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~ 296 (509)
++..++.|+.+++ +++||++|-+|-|+..+.....|.+
T Consensus 4 d~~K~~aa~~A~~-~V~~gmvvGlGTGSTv~~~I~~L~~ 41 (226)
T 3ixq_A 4 EDLKLKVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGN 41 (226)
T ss_dssp HHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCCCCEEEeCcHHHHHHHHHHHHH
Confidence 4667888999999 9999999999999999888888865
No 70
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=41.59 E-value=12 Score=36.00 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhhcCC----CCeeccccCchHHHHHHhhhcc
Q psy2323 257 VTEIDSAIANHICDELLED----EATLQIGLGKIPEAILSNIKHQ 297 (509)
Q Consensus 257 ~~~~~~~Ia~~va~~~i~d----g~~lqlGiG~ip~aV~~~L~~~ 297 (509)
.++..++||+.+++ +++| |++|=+|-|+.-..+...|.++
T Consensus 11 ~~~~K~~aA~~A~~-~V~d~~~~g~vIGLGtGST~~~~i~~L~~~ 54 (239)
T 3uw1_A 11 QDELKRLVGEAAAR-YVTDNVPQGAVIGVGTGSTANCFIDALAAV 54 (239)
T ss_dssp HHHHHHHHHHHHHH-HHHHHSCTTCEEEECCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HhhccCcCCCEEEECccHHHHHHHHHHHhh
Confidence 34678899999999 9999 9999999999999999999874
No 71
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=39.78 E-value=19 Score=34.21 Aligned_cols=38 Identities=11% Similarity=0.330 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhc
Q psy2323 258 TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKH 296 (509)
Q Consensus 258 ~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~ 296 (509)
++..++.|+.+++ +++||++|-+|-|+..+.+...|.+
T Consensus 5 d~~K~~aa~~A~~-~V~~gmvvGlGTGSTv~~~i~~L~~ 42 (228)
T 4gmk_A 5 DELKQLVGTKAVE-WIKDGMIVGLGTGSTVKYMVDALGK 42 (228)
T ss_dssp HHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCCCCEEEECchHHHHHHHHHHHH
Confidence 4667788888998 9999999999999999888888865
No 72
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=35.88 E-value=41 Score=32.95 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHh---hcCCCCeeccccCchHHHHHHhhhcc---CCeeEEe
Q psy2323 259 EIDSAIANHICDE---LLEDEATLQIGLGKIPEAILSNIKHQ---INLGVHT 304 (509)
Q Consensus 259 ~~~~~Ia~~va~~---~i~dg~~lqlGiG~ip~aV~~~L~~~---~~lgiht 304 (509)
+..+.||+.+|.+ +|++|++|=++-|+.|.++...|.+. +++.+.+
T Consensus 90 ~~k~~ia~~AA~~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~~~~~~~vv~ 141 (315)
T 2w48_A 90 EQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRSQSRQVICVP 141 (315)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhhccccCCCCcEEEE
Confidence 3567899988882 38999999999999999999999653 6777655
No 73
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=29.60 E-value=2.9e+02 Score=27.60 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHhhcCCCCCEEEEcCCCC--------ChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCH-
Q psy2323 20 EQAVQFIKPNSLVFVEGVVG--------TPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSP- 90 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~g--------~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~- 90 (509)
+-++++|++|++|.+.+++| ....+++...++. +.++++..-+ .| ++.+.
T Consensus 140 ~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~g-----k~~~V~v~Et-------RP---------~~qG~r 198 (347)
T 1t9k_A 140 KNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESG-----KRIRVFADET-------RP---------YLQGAR 198 (347)
T ss_dssp HHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTT-----CCEEEEEECC-------TT---------TTHHHH
T ss_pred HHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHCC-----CeEEEEEeCC-------CC---------ccccHH
Confidence 34668999999999988766 7777777766542 4677774421 11 22222
Q ss_pred -HHHHHHHcCC-ceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEE
Q psy2323 91 -YTRKYVNTGA-AEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVS 139 (509)
Q Consensus 91 -~~r~~i~~G~-i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~s 139 (509)
..+++.+.|- +.+++- +.+..++..+ .+|.+|+-+...-++|.+.
T Consensus 199 lta~eL~~~GI~vtlI~D--sa~~~~M~~~--~Vd~VivGAd~V~aNG~v~ 245 (347)
T 1t9k_A 199 LTAWELMKDGIEVYVITD--NMAGWLMKRG--LIDAVVVGADRIALNGDTA 245 (347)
T ss_dssp THHHHHHTTTCEEEEECG--GGHHHHHHTT--CCSEEEECCSEEETTSCEE
T ss_pred HHHHHHHhCCCCEEEEeh--hHHHHHhhcC--CCCEEEECccEEecCCCEE
Confidence 2345555552 344443 3444445433 5899999999888899763
No 74
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=22.44 E-value=2.5e+02 Score=27.98 Aligned_cols=121 Identities=11% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCHH-HHHHHHc
Q psy2323 20 EQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPY-TRKYVNT 98 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~~-~r~~i~~ 98 (509)
+-++++|++|++|.+.+++|....+++...++. +.++++..-+ .| ++.|.. .+++.+.
T Consensus 133 ~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~g-----k~~~V~v~Et-------RP---------~~qGrltA~eL~~~ 191 (338)
T 3a11_A 133 EFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQG-----KDIKVIVTET-------RP---------KWQGKITAKELASY 191 (338)
T ss_dssp HHHHTTCCTTCEEEECSCCHHHHHHHHHHHHTT-----CCCEEEEECC-------TT---------TTHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHCC-----CeEEEEEeCC-------CC---------chhhHHHHHHHHhC
Confidence 446689999999999999887777777665542 4567764421 12 111211 2445555
Q ss_pred C-CceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHHH-hccC---cEEEEecccCCCC
Q psy2323 99 G-AAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVI-RGSK---RVIAQINDRMPRS 168 (509)
Q Consensus 99 G-~i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a-~aAk---~VIvEVn~~vP~~ 168 (509)
| .+.+++-. .+..++ ..+|.+|+-+-..-++|.+.=-. ..|..+++ +..+ .|.++.-+..|..
T Consensus 192 GI~vtlI~Ds--a~~~~M----~~Vd~VivGAd~V~anG~v~NKi-GT~~lAl~Ak~~~vPfyV~a~~~k~d~~~ 259 (338)
T 3a11_A 192 GIPVIYVVDS--AARHYM----KMTDKVVMGADSITVNGAVINKI-GTALIALTAKEHRVWTMIAAETYKFHPET 259 (338)
T ss_dssp TCCEEEECGG--GTTTTG----GGCSEEEECCSEECTTSCEEEET-THHHHHHHHHHTTCEEEEECCGGGBCSCC
T ss_pred CCCEEEEehH--HHHHHH----HhCCEEEECccEEecCCCEeecc-cHHHHHHHHHHcCCCEEEecccceecccC
Confidence 5 24454432 111222 24899999999998999763211 11233222 2222 3555666555543
No 75
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=20.99 E-value=4.2e+02 Score=26.42 Aligned_cols=93 Identities=13% Similarity=0.202 Sum_probs=56.4
Q ss_pred HHHhhcCCCCCEEEEcCCC--------CChHHHHHHHHHhHhcCCCcceEEEEeecCCCCCCCCCCCCcEEEeccccCH-
Q psy2323 20 EQAVQFIKPNSLVFVEGVV--------GTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSP- 90 (509)
Q Consensus 20 eEA~~~I~dGdtI~~gg~~--------g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~~~~~~~~~~v~~~s~f~~~- 90 (509)
+-++++|+||++|.+.+.+ |....+++...++ -+.+++|..-+ .| ++.+.
T Consensus 138 ~~g~~~I~~g~~ILThcnsg~lat~g~gtal~~l~~A~~~-----gk~~~V~v~Et-------RP---------~~qG~r 196 (351)
T 1t5o_A 138 EYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQ-----GKEIRVIACET-------RP---------LNQGSR 196 (351)
T ss_dssp HHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHT-----TCCCEEEEECC-------TT---------TTHHHH
T ss_pred HHHHHHhCCCCEEEEecCCccccccCCChHHHHHHHHHHC-----CCEEEEEEeCC-------Cc---------ccccHH
Confidence 3466799999999997643 5566666655443 14567764421 11 22222
Q ss_pred -HHHHHHHcCC-ceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcE
Q psy2323 91 -YTRKYVNTGA-AEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFV 138 (509)
Q Consensus 91 -~~r~~i~~G~-i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~ 138 (509)
..+++.+.|- +.+++- +.+..++..| .+|.+|+-+-..-++| +
T Consensus 197 lta~eL~~~GI~vtlI~D--sa~~~~M~~~--~Vd~VivGAd~V~aNG-v 241 (351)
T 1t5o_A 197 LTCWELMEDGIDVTLITD--SMVGIVMQKG--MVDKVIVGADRIVRDA-V 241 (351)
T ss_dssp THHHHHHHTTCCEEEECG--GGHHHHHHTT--CCSEEEECCSEEETTE-E
T ss_pred HHHHHHHhCCCCEEEEeh--hHHHHHhhcC--CCCEEEECccchhhcC-c
Confidence 2355666662 455553 3344445433 5899999999988999 5
No 76
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae}
Probab=20.61 E-value=32 Score=30.31 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=39.8
Q ss_pred cCccEEeeceeeeecCCCccccCCCCccccccccH-----------HHHhcccccCCCCCCcEEEEeecccCCCC
Q psy2323 370 NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQ-----------VDFMRGALTGLDGKGKAILALPSTDVSTG 433 (509)
Q Consensus 370 ~~~~vain~a~EvDl~G~vn~~~~g~r~~sG~GG~-----------~Df~~gA~~s~~~~g~~ii~~~st~~k~G 433 (509)
.++-..|.+..-||..|--+...+| |.||. +|.+.|-+. -| |+-|++|+||- ++|
T Consensus 40 ~d~~LyVRSGaaIDAIGt~~~~lvG-----G~GGsL~~IDls~V~sI~vT~G~f~-~g--g~hilaltF~~-~dG 105 (152)
T 4gx7_A 40 QDNRLYVRAGAAIDALGSASDLLVG-----GNGGSLSSVDLSGVKSITATSGDFQ-YG--GQQLVALTFTY-QDG 105 (152)
T ss_dssp TTCEEEEEESSSEEEEESSTTCCEE-----CSCSEEEEEECTTEEEEEEEEEEET-TS--SEEEEEEEEEE-TTS
T ss_pred CCCeEEEeeCceeeeccCCcccccc-----cCCCcccEeehhhcEEEEEEeeeee-cc--CceEEEEEEEE-cCC
Confidence 3457899999999999976555444 45774 455556553 34 88899999998 777
Done!