RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2323
(509 letters)
>gnl|CDD|223504 COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and
conversion].
Length = 501
Score = 283 bits (727), Expect = 5e-90
Identities = 142/496 (28%), Positives = 224/496 (45%), Gaps = 63/496 (12%)
Query: 16 LISKEQAVQFIKPNSLVFV-EGVVGTPKVLMNAMYDHVKSKNIQG----VTVLDVFSLYP 70
LI+ E+A IK + + G PK L A+ ++ + + V + S+
Sbjct: 16 LITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGA 75
Query: 71 --YDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYF-SPDVALI 127
+ + +RR + V RK +N G +++ L+++P + +G+ D+ALI
Sbjct: 76 DEDLKLAEAGEVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALI 135
Query: 128 SVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSD 187
S D G++ GT+V S G+++VI ++N MP AL + +I +
Sbjct: 136 EASAIDEHGYIIPGTSVGNSKSWAEGAEKVIVEVNKYMP-----ALEGLHDIVRVPGMRV 190
Query: 188 LIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSW 247
I I I + +ID VE + E +P
Sbjct: 191 PIPIHRPGDRIGAPYIP---------IDPEKIDAIVE-TDEPDAP--------------- 225
Query: 248 LLFSPATEEVTEIDSAIANHIC------DELLEDEATLQIGLGKIPEAILSNIKHQI--N 299
LL P I + L+ D LQ G+G IP A++ +K +
Sbjct: 226 LLERPPDPTTQAIAIHL-LGFLASEVAHGRLIPDGLPLQSGIGNIPNAVMGGLKESPFKD 284
Query: 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 359
LGVHTE+L G++ L G + N+ K+ + +G + LYD+++ N + ++
Sbjct: 285 LGVHTEVLQDGLVDLIEEGKVTNASKT----SFVLSFAMGSRKLYDYLNYNPRIVLRPQD 340
Query: 360 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGK 418
YSN+P IIR+ + AIN+ LE+D+ G V S + G+R +G GG DF+R A
Sbjct: 341 YSNNPEIIRRLG-VIAINSALEVDLYGAVNSTHVGGSRQMNGIGGSGDFVRNAYL----- 394
Query: 419 GKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHAL 478
+I A PST +S+IVP + + V +R V VVTEYG ADL S R+RA A+
Sbjct: 395 --SIFATPSTAKGGTISRIVPML---SHVDHTRHDVDVVVTEYGIADLRGLSPRERAAAI 449
Query: 479 IRIAHPQHREALEREA 494
I AHP +R LE A
Sbjct: 450 IECAHPDYRPWLEEYA 465
>gnl|CDD|205516 pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/transferase
C-terminal domain. This family contains several enzymes
which take part in pathways involving acetyl-CoA.
Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
of acetate from acetyl-CoA, CoA transferase (CAT1)
EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
form acetyl-CoA.
Length = 152
Score = 245 bits (627), Expect = 1e-79
Identities = 82/154 (53%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 339 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIY 398
G + LYDF+ +N ++M+ Y NDP +I QN M +IN+ LE+D+TGQV S+S+G R Y
Sbjct: 1 GSQRLYDFLDDNPKIEMRPVDYVNDPEVIAQNDNMVSINSALEVDLTGQVNSESIGGRQY 60
Query: 399 SGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVV 458
SG GGQ+DF+RGA GK+I+ALPST +S+IVPT+ PGA V R V YVV
Sbjct: 61 SGVGGQLDFVRGAYLSKG--GKSIIALPSTAKDGTISRIVPTLSPGAHVTTPRHDVDYVV 118
Query: 459 TEYGCADLFAKSTRQRAHALIRIAHPQHREALER 492
TEYG ADL KS R+RA ALI IAHP R+ L
Sbjct: 119 TEYGIADLRGKSLRERARALISIAHPDFRDELLE 152
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 230 bits (587), Expect = 6e-70
Identities = 149/488 (30%), Positives = 230/488 (47%), Gaps = 70/488 (14%)
Query: 15 ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAM---YDHVKSKNIQGVTVLDVFSLYPY 71
+L++ ++AV+ +K V GTP L A+ ++ NI+G ++ ++
Sbjct: 9 KLVTADEAVKVVKSGDWVDYGWTTGTPVALDAALAKRMPELEDVNIRGGILMWPPEIFKI 68
Query: 72 DNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSP 131
+N P + S+ + RK + G A Y PI ++LP + DVA+ V+P
Sbjct: 69 EN--PAEHFTWN-SWHMGGIERKAIAKGFAFYSPIRYSELPRYYRESNTPVDVAMFQVAP 125
Query: 132 PDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRY 191
D G+ + G + L +V +K++I ++N+ MPR LG
Sbjct: 126 MDEHGYFNFGPSASHLGAVCEKAKKIIVEVNENMPRCLGGF------------------- 166
Query: 192 VCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFS 251
+ VH+S++D VE +P G
Sbjct: 167 -------------------EEGVHISKVDMIVEGD--------------NPAIGELGAGG 193
Query: 252 PATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQ--INLGVHTELLTP 309
ATE +D A+A I +E+ + A LQ+G+G +P A+ S I +LGVHTE+
Sbjct: 194 AATE----VDKAVAKLIVEEI-PNGACLQLGIGGMPNAVGSLIAESDLKDLGVHTEMYVD 248
Query: 310 GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ 369
+ + +G IN SKK+IDRG+ G K +YD++ +N Y+ND I
Sbjct: 249 AFVDIAKAGKINGSKKNIDRGRQVYAFGAGTKKMYDYLDDNPECMSAPVDYTNDIRSISA 308
Query: 370 NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPST- 428
+IN ++ID+ GQV ++S G + SG GGQ+DF+ GA L GK+ + L ST
Sbjct: 309 LDNFISINNAVDIDLFGQVNAESAGIKQISGAGGQLDFVLGAY--LSKGGKSFICLSSTF 366
Query: 429 DVSTGL--SKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQH 486
G S+I PT+ G+ V +RA+ YVVTEYG +L ST Q+A ALI IAHP
Sbjct: 367 TDKDGQLHSRIRPTLHNGSIVTDTRANTHYVVTEYGKVNLKGLSTWQKAEALISIAHPDF 426
Query: 487 REALEREA 494
R+ L +EA
Sbjct: 427 RDELIKEA 434
>gnl|CDD|234217 TIGR03458, YgfH_subfam, succinate CoA transferase. This family of
CoA transferases includes enzymes catalyzing at least
two related but distinct activities. The E. coli YgfH
protein has been characterized as a
propionyl-CoA:succinate CoA transferase where it appears
to be involved in a pathway for the decarboxylation of
succinate to propionate. The Clostridium kluyveri CAT1
protein has been characterized as a acetyl-CoA:succinate
CoA transferase and is believed to be involved in
anaerobic succinate degradation. The
propionate:succinate transferase activity has been
reported in the propionic acid fermentation of
propionibacterium species where it is distinct from the
coupled activities of distinct nucleotide-triphosphate
dependent succinate and propionate/acetate CoA
transferases (as inferred from activity in the absence
of NTPs). The family represented by this model includes
a member from Propionibacterium acnes KPA171202 which is
likely to be responsible for this activity. A closely
related clade not included in this family are the Ach1p
proteins of fungi which are acetyl-CoA hydrolases. This
name has been applied to many of the proteins modeled by
This model, possibly erroneously.
Length = 485
Score = 125 bits (316), Expect = 4e-31
Identities = 130/509 (25%), Positives = 205/509 (40%), Gaps = 90/509 (17%)
Query: 17 ISKEQAVQFIKPNSLVFVEGVV--GTPKVLMNAMYDHVKSKNIQG----VTVLDVFSLYP 70
+S ++A IK V + G G PK + A+ K+ + G +T+L S P
Sbjct: 3 MSADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGP 62
Query: 71 -YDNMTPEDDCV-RRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSP-DVALI 127
D + E D + RRL + P RK +N G Y+ + L+ + G+ DVA+I
Sbjct: 63 ELDGVLAEADAIARRLPYQSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVI 122
Query: 128 SVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSD 187
+ G + ++V + + + +VI ++N P L E + D
Sbjct: 123 EAAAITEDGRIIPTSSVGNNPTFLELADKVIVEVNTWQPLEL-------------EGMHD 169
Query: 188 LIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSW 247
+ P + + + Y P K ++ +
Sbjct: 170 -----------IYEPGDPPHRRPIPITTPGDR---IGTPYIQIDPDKIVAVVETNAPDRN 215
Query: 248 LLFSPATEEVTEIDSAIANHICDELLEDEAT---------LQIGLGKIPEAILSNIKHQI 298
F+P +EV++ IA H+ D L + LQ G+G I A+L+ +
Sbjct: 216 SPFTP-PDEVSQ---KIAGHLIDFLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDSP 271
Query: 299 --NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQIT---ATLLLGDKPLYDFVHNN--- 350
NL ++TE++ ++ L ID G++T AT L + + N
Sbjct: 272 FENLTMYTEVIQDSMLDL------------IDSGKLTFASATSLTLSPEALERFYANIDF 319
Query: 351 --ELVQMKRGTYSNDPAIIRQNHRM--TAINTCLEIDITGQVVSDS-LGTRIYSGFGGQV 405
+ + ++ SN P IIR R+ AINT +E DI G V S +GT++ +G GG
Sbjct: 320 YRDKIVLRPQEISNHPEIIR---RLGVIAINTAIEADIYGNVNSTHVMGTKMMNGIGGSG 376
Query: 406 DFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAH-VQYVVTEYGCA 464
DF R A +I PS +S IVP V H V +VTE G A
Sbjct: 377 DFARNAYL-------SIFMTPSIAKGGKISSIVPM----VSHVDHTEHDVMVIVTEQGLA 425
Query: 465 DLFAKSTRQRAHALI-RIAHPQHREALER 492
DL S R+RA A+I AHP +R+ L
Sbjct: 426 DLRGLSPRERARAIIDNCAHPDYRDLLRD 454
>gnl|CDD|217098 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/transferase
N-terminal domain. This family contains several enzymes
which take part in pathways involving acetyl-CoA.
Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
of acetate from acetyl-CoA, CoA transferase (CAT1)
EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
form acetyl-CoA.
Length = 198
Score = 92.6 bits (230), Expect = 1e-21
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)
Query: 16 LISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAM-YDHVKSKNIQGVTVLDVF-----S 67
LIS E+A ++ + G GT K + + V+ N + T +D+ S
Sbjct: 9 LISPEEAASLVEIGMHIERGGFTFAGTAKAIPKYLAKRKVELVNAKVKTFIDLAVGAFLS 68
Query: 68 LYPYDNMTPEDDCV--RRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVA 125
P +T D R RK +N G A ++ L+++P +F+ G+ DVA
Sbjct: 69 AGPEAEVTDWKDAFLYRPAPKQSGELGRKAINQGLASFVDKHLSEVPQLFEYGFVPIDVA 128
Query: 126 LISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLG-EALVHVSEIDY 181
LI + D G+ + G + +I ++ V + PR G + + + ++DY
Sbjct: 129 LIETTAMDDHGYFNFGVGCDIVKVIIEVAELVDIVMPSNPPRRNGYDEFIAIDKVDY 185
>gnl|CDD|217708 pfam03743, TrbI, Bacterial conjugation TrbI-like protein. Although
not essential for conjugation, the TrbI protein greatly
increase the conjugational efficiency.
Length = 186
Score = 30.6 bits (70), Expect = 1.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 382 IDITGQVVSDSLGTRIYSGFGGQVD---FMR----GALTGLDGKGKAILALPSTDVSTG 433
ID+ G +D LG +G G+VD R L+ L G G+A A S+ G
Sbjct: 79 IDLPGSPGADELG---RAGIRGRVDNHFGQRFGGALLLSLLSGGGQAAAASASSTSGNG 134
>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
Length = 131
Score = 29.2 bits (66), Expect = 2.0
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 20 EQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLD 64
EQA++ ++P V V G+ G V +K I G
Sbjct: 74 EQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGG 118
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA
modification enzyme. Catalyzes the first step in the
modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 30.4 bits (69), Expect = 2.2
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 23/108 (21%)
Query: 270 DELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDR 329
EL D +QIGL E + I+ +++ + + LL V L+
Sbjct: 180 IELFYD--IVQIGLASSREPLHQRIEQRVHDMLESGLL-AEVKALYAQYD---------- 226
Query: 330 GQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAI--IRQNHRMTA 375
L D P + E + GT S + AI I+ N R A
Sbjct: 227 --------LCDLPSIQAIGYKEFLLYLEGTVSLEDAIERIKCNTRQYA 266
>gnl|CDD|233342 TIGR01285, nifN, nitrogenase molybdenum-iron cofactor biosynthesis
protein NifN. This protein forms a complex with NifE,
and appears as a NifEN in some species. NifEN is a
required for producing the molybdenum-iron cofactor of
molybdenum-requiring nitrogenases. NifN is closely
related to the nitrogenase molybdenum-iron protein beta
chain NifK. This model describes most examples of NifN
but excludes some cases, such as the putative NifN of
Chlorobium tepidum, for which a separate model may be
created [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 432
Score = 30.1 bits (68), Expect = 3.3
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 132 PDASGFVSLGTNVVELLSVIRGS--KRVIAQINDRMPRSLGEALVHVSEIDYKEKLSD 187
P A G +S G L+ RG RV+ Q ++ P+ G A+V V+ D+K L D
Sbjct: 92 PKAIGLLSTG------LTETRGEDIARVVRQFREKHPQHKGTAVVTVNTPDFKGSLED 143
>gnl|CDD|143621 cd07470, CYTH-like_mRNA_RTPase, CYTH-like mRNA triphosphatase
(RTPase) component of the mRNA capping apparatus. This
subgroup includes fungal and protozoal RTPases. RTPase
catalyzes the first step in the mRNA cap formation
process, the removal of the gamma-phosphate of
triphosphate terminated pre-mRNA. This activity is
metal-dependent. The 5'-end of the resulting mRNA
diphosphate is subsequently capped with GMP by RNA
guanylytransferase, and then further modified by one or
more methyltransferases. The mRNA cap-forming activity
is an essential step in mRNA processing. The RTPases are
not conserved among eukarya. The structure and mechanism
of this fungal RTPase domain group is different from
that of higher eukaryotes. This subgroup belongs to the
CYTH/triphosphate tunnel metalloenzyme (TTM)-like
superfamily, whose enzymes have a unique active site
located within an eight-stranded beta barrel. The RTPase
domain of the mimivirus RTPase-GTase fusion mRNA capping
enzyme also belongs to this subgroup.
Length = 243
Score = 29.3 bits (66), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 362 NDPAIIRQNHRMTAINTCLEIDITGQVVS 390
N P + R+ R++ + ID+T +V S
Sbjct: 166 NGPILTRRKDRLSYTHNAFRIDLT-KVTS 193
>gnl|CDD|217775 pfam03874, RNA_pol_Rpb4, RNA polymerase Rpb4. This family includes
the Rpb4 protein. This family also includes C17 (aka
CGRP-RCP) is an essential subunit of RNA polymerase III.
C17 forms a subcomplex with C25 which is likely to be
the counterpart of subcomplex Rpb4/7 in Pol II.
Length = 110
Score = 27.9 bits (63), Expect = 5.0
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 144 VVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYK---EKLSDLIRYVCQV 195
+VE L +K QI + +P + E + ++ + E+L +++ + +
Sbjct: 55 LVEELKEFELTKFEALQIVNLLPETADELRAIIESLESRFSEEQLEEILDILSKY 109
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 29.7 bits (67), Expect = 5.3
Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 22/233 (9%)
Query: 156 RVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYL--IVCVLIRMPRSLGKAL 213
RV+A + P LG ++Y E L L + YL + V + +L +
Sbjct: 169 RVLALLRKYGPELLGNYEEDG--LNYSEVLEFLAELINGGYLQPVPLVGGLLDDALETSR 226
Query: 214 VHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEV------TEIDSAIANH 267
V G+E+ + + + A + T+ I+
Sbjct: 227 VVFG--KDGIEIRTPKGEKYALLISIKEYPWSTRFITLDALLALPFEFIITQSFLFISKQ 284
Query: 268 ICDELLEDEATLQIGLGKIPEAILSNIKHQINLG--VHTELLTPGVIKLFNSGVINNSKK 325
+ LE Q K S + + ++ G + V K+
Sbjct: 285 VAISKLE----FQKRRAKSSGDAKSQAAELDEARDLLGSNRVSFGYHH-LSILVFAKDKE 339
Query: 326 SIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINT 378
++D +L +K FV E + ++ S P I N R +++
Sbjct: 340 ALDEKLAMVLNILTNK---GFVAVRETINIEPAFLSQLPGNIYYNVRKRLLSS 389
>gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon
recognition domain of the type found in Saccharomyces
cerevisiae and human cytoplasmic aspartyl-tRNA
synthetase (AspRS). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. The enzymes in this group are homodimeric
class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs
catalyze the specific attachment of amino acids (AAs)
to their cognate tRNAs during protein biosynthesis.
This 2-step reaction involves i) the activation of the
AA by ATP in the presence of magnesium ions, followed
by ii) the transfer of the activated AA to the
terminal ribose of tRNA. In the case of the class2b
aaRSs, the activated AA is attached to the 3'OH of the
terminal ribose. Eukaryotes contain 2 sets of aaRSs,
both of which are encoded by the nuclear genome. One
set concerns with cytoplasmic protein synthesis,
whereas the other exclusively with mitochondrial
protein synthesis.
Length = 102
Score = 27.1 bits (61), Expect = 7.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 15 ELISKEQAVQFIK---PNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGV 60
E +SK Q V++ S+V VEG V P+ +KS Q V
Sbjct: 39 EGVSK-QMVKWAGSLSKESIVDVEGTVKKPEEP-------IKSCTQQDV 79
>gnl|CDD|147305 pfam05054, DUF673, Protein of unknown function (DUF673). Family
of uncharacterized viral proteins.
Length = 354
Score = 28.8 bits (65), Expect = 7.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 56 NIQGVTVLDVFSLYPYDNMTPEDDC----VRRLSFFVSPYT-RKYVNT 98
NI+ V + D F +PY+ + P+ D V L+ +V +YV+
Sbjct: 6 NIK-VYISDRFVAFPYEYVIPQPDVGGAPVTNLTVYVPTEEDVQYVDK 52
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 28.5 bits (64), Expect = 9.3
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 348 HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDF 407
E V++ G+ D + AI E +V++ SLG
Sbjct: 72 AKLESVKVLPGSGGTDSELAG------AIEWAAERPNDIRVINMSLGPVDGPPSSWSSAI 125
Query: 408 MRGALTGLDGKG 419
A+ G D KG
Sbjct: 126 DELAVNGADNKG 137
>gnl|CDD|235934 PRK07101, PRK07101, hypothetical protein; Provisional.
Length = 187
Score = 28.0 bits (63), Expect = 9.6
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 145 VELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKL-------SDLIR----YVC 193
E +++ G + ++ R R+L E + D E + L+R Y
Sbjct: 6 FETIAIEDGEIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTELQEGLVRCRIDYNA 65
Query: 194 QVYLIVCV--LIRMPRSLGKALVHVSEIDYG 222
++Y + R RS V+ +IDY
Sbjct: 66 EIYQVQYFPYQRRPIRSF--QPVYCDDIDYS 94
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0892 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,290,876
Number of extensions: 2648262
Number of successful extensions: 2185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2161
Number of HSP's successfully gapped: 25
Length of query: 509
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 408
Effective length of database: 6,457,848
Effective search space: 2634801984
Effective search space used: 2634801984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)