RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2323
(509 letters)
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD;
1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Length = 448
Score = 451 bits (1163), Expect = e-156
Identities = 177/507 (34%), Positives = 267/507 (52%), Gaps = 72/507 (14%)
Query: 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGV 60
M KK Y + ++AV+ IK V V P VL+ AM + + V
Sbjct: 1 MDWKKIYED-----RTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNV 53
Query: 61 TVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGY 119
TV + +L + PE + +F SP TR + G +++P+ +++P + +
Sbjct: 54 TVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDI 113
Query: 120 FSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEI 179
F DV ++ VSPPD +GF +G + + I+ +K V+A++ND++P G+ VHVSEI
Sbjct: 114 FHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEI 173
Query: 180 DYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239
D VE S+ L G
Sbjct: 174 ----------------------------------------DKFVETSHPLPEIGLP---- 189
Query: 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQIN 299
++ E+++AI H L+ED +TLQ+G+G IP+A+LS +K + +
Sbjct: 190 ----------------KIGEVEAAIGKHCAS-LIEDGSTLQLGIGAIPDAVLSQLKDKKH 232
Query: 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 359
LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++ T L+G K LYDF NN V++K
Sbjct: 233 LGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVD 292
Query: 360 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKG 419
Y N P+++ Q +M IN CL++D GQ+VSDS+GT+ +SG GGQVDF+RGA +DGKG
Sbjct: 293 YINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKG 352
Query: 420 KAILALPST---DVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAH 476
KAI+A+PS + +SKIVP I GA V SR YVVTEYG A++ KS + RA
Sbjct: 353 KAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRAR 412
Query: 477 ALIRIAHPQHREALEREAYEILKVMPK 503
ALI IAHP ++ L+ E +
Sbjct: 413 ALINIAHPDFKDELKAEFEKRFNAAFS 439
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.05A {Porphyromonas gingivalis}
Length = 434
Score = 445 bits (1146), Expect = e-154
Identities = 163/484 (33%), Positives = 247/484 (51%), Gaps = 66/484 (13%)
Query: 16 LISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMT 75
++S E+AV+ IK V + G P+ ++A+ Q V + + L M
Sbjct: 15 IVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQAD--LFQNVEIYHMLCLGEGKYMA 72
Query: 76 PE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDA 134
PE R ++ FV +RK V A++IP+ ++P + + DVA++ +S PD
Sbjct: 73 PEMAPHFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDE 132
Query: 135 SGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQ 194
+G+ S G + + VI +IN +MP G+ L+H+S++
Sbjct: 133 NGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKL--------------- 177
Query: 195 VYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPAT 254
DY V Y ++S A
Sbjct: 178 -------------------------DYIVMADYPIYSL--------------------AK 192
Query: 255 EEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKL 314
++ E++ AI + + L+ED ATLQ+G+G IP+A L +K + +LG+HTE+ + GV++L
Sbjct: 193 PKIGEVEEAIGRNCAE-LIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVEL 251
Query: 315 FNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMT 374
SGVI KK++ G++ AT L+G + +Y F+ N V++ Y NDP +I QN M
Sbjct: 252 VRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMV 311
Query: 375 AINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGL 434
+IN+C+EID+ GQVVS+ +G++ +SG GGQVD++RGA GK+I+A+PST +
Sbjct: 312 SINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGA--AWSKNGKSIMAIPSTAKNGTA 369
Query: 435 SKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREA 494
S+IVP I GA V R V YVVTEYG A L KS RQRA ALI IAHP RE L +
Sbjct: 370 SRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHL 429
Query: 495 YEIL 498
+
Sbjct: 430 RKRF 433
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: COA; 2.40A {Shewanella oneidensis}
Length = 436
Score = 437 bits (1125), Expect = e-151
Identities = 169/484 (34%), Positives = 251/484 (51%), Gaps = 66/484 (13%)
Query: 18 SKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPE 77
S +AV I+ ++ + TPKVL++A+ H + +T+L + + P
Sbjct: 8 SALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPS 65
Query: 78 -DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASG 136
+R FF TR + +G A+Y+PI L+++P +F G D A+I VSPPD G
Sbjct: 66 LLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHG 125
Query: 137 FVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVY 196
SLG +V L+ + + ++IA IN +MPR+ G
Sbjct: 126 MCSLGISVEATLAACQVAGKIIAHINPQMPRTHG-------------------------- 159
Query: 197 LIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEE 256
+H+ E S L +
Sbjct: 160 --------------DGFIHIDRFAAVYEQSASLPIH--------------------SFAT 185
Query: 257 VTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFN 316
+ AI H+ + L+ D LQ+G+G IP+A+LS + +LGVHTEL + G+++L
Sbjct: 186 GDAVSLAIGQHVAE-LVRDGDCLQMGIGAIPDAVLSCLTGHKDLGVHTELFSDGILQLVE 244
Query: 317 SGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAI 376
GVINN+KK G++ LG + LYD+V +N V ND +IIR+N + AI
Sbjct: 245 KGVINNTKKRFYPGKLVTGFALGSQKLYDYVDDNPAVIFMDIEQVNDTSIIRKNPNVMAI 304
Query: 377 NTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSK 436
N+ L++D+TGQV +DS+GT+IYSG GGQ+DF+RGA GL G++++ALPST +S+
Sbjct: 305 NSALQVDLTGQVCADSIGTKIYSGVGGQMDFIRGA--GLSEGGRSVIALPSTAAGGRISR 362
Query: 437 IVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYE 496
I + PGAGVV +RAHV Y+VTEYG A+L +S R+RA ALI IAHP RE L R+A+E
Sbjct: 363 IASVLSPGAGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSRDAFE 422
Query: 497 ILKV 500
+ +
Sbjct: 423 VWGL 426
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.80A
{Porphyromonas gingivalis}
Length = 439
Score = 429 bits (1106), Expect = e-148
Identities = 150/502 (29%), Positives = 240/502 (47%), Gaps = 72/502 (14%)
Query: 1 MSAKKHYSTTTSSMELISKEQAV-QFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQG 59
M ++ Y + S ++AV +KP + V P AMY + ++
Sbjct: 1 MQWQELYRQ-----RVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQRE--KLEN 53
Query: 60 VTVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRG 118
+TV + ++ PE V F+ +R ++IP +++P +F +G
Sbjct: 54 ITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQG 113
Query: 119 YFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSE 178
+F DVA++ VS P+ G+ S G + + + V+A++N +MP GE L+H+S+
Sbjct: 114 FFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISK 173
Query: 179 IDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWL 238
+ + +EV +
Sbjct: 174 L----------------------------------------THIIEVDEPIAEV------ 187
Query: 239 LFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQI 298
++++ I + L++D TLQ+G+G IP+A+L ++
Sbjct: 188 --------------LPPAGSDLELRIGQNCA-SLIKDGDTLQLGIGGIPDAVLRALEGHK 232
Query: 299 NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRG 358
+LG+HTE+ T GV+++ G+IN KK++ ++ +L+ G K LYDFV+NN +++
Sbjct: 233 DLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPV 292
Query: 359 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 418
Y N+P +I +N RM +IN+CLE+D+ GQ S+S+G +SG GGQVDF+RGA
Sbjct: 293 DYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGA--KRSKG 350
Query: 419 GKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHAL 478
G +I+A PST S+IVP +K GA V R V YVVTEYG A L + RQRA AL
Sbjct: 351 GISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEAL 410
Query: 479 IRIAHPQHREALEREAYEILKV 500
IAHP R ALE E ++
Sbjct: 411 TAIAHPDFRPALEEEIRRRFEL 432
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 418 bits (1077), Expect = e-143
Identities = 134/506 (26%), Positives = 223/506 (44%), Gaps = 80/506 (15%)
Query: 1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGV 60
M + Y +L + E+AV I S + + P L+ A+ D +I +
Sbjct: 16 MDIRALYDE-----KLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDL 70
Query: 61 TV--LDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTRKYVNTGAA-------EYIPIMLND 110
V + + + E ++ ++ S FV+ R + G Y+P +
Sbjct: 71 RVYYFETAKIAGDTILRYELNNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQ 130
Query: 111 LPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLG 170
P + D + +VSP D G+ SLG + R ++R I ++N MPR G
Sbjct: 131 APRLL-AEEIGIDTFMHTVSPMDCHGYFSLGVGNDYSSRIARSARRFIVEVNRYMPRVQG 189
Query: 171 EALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELF 230
EA +H+SE+D VE L
Sbjct: 190 EAAA---------------------------------------IHISEVDAIVENHVPLI 210
Query: 231 SPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAI 290
++I++ I D L+ D A LQ+G+G +P +
Sbjct: 211 EM--------------------PVRSAIPEYTSISHIIAD-LVPDGACLQMGVGALPNLV 249
Query: 291 LSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN 350
+K + +LG+HTE+L PG++ L GV+ N +K++DRG+ T +G + +Y++++++
Sbjct: 250 CGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYEYLNDH 309
Query: 351 ELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRG 410
+ + Y NDP II QN + +IN L+ID+TG S+ + YS GGQ+DF+RG
Sbjct: 310 PAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQLDFVRG 369
Query: 411 ALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKS 470
A G++I+A PST +S+I+P I V R Y+VTE+G +L S
Sbjct: 370 A--YASKGGRSIIATPSTAAKGTVSRIIPRI--DGPVTTPRIDTHYIVTEFGAVNLKGLS 425
Query: 471 TRQRAHALIRIAHPQHREALEREAYE 496
+ +RA +I +AHP R+ L + A +
Sbjct: 426 STERALRIIELAHPDFRDELTQAAKK 451
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein STRU
initiative; 2.70A {Porphyromonas gingivalis}
Length = 506
Score = 373 bits (958), Expect = e-125
Identities = 113/499 (22%), Positives = 195/499 (39%), Gaps = 63/499 (12%)
Query: 16 LISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQG----VTVLDVFSLY 69
I+ E+A +F+ N V G G PKV+ A+ + + +G + + S
Sbjct: 5 FITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTG 64
Query: 70 PY--DNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSP-DVAL 126
+ D R + + R +N G+ Y + L+ L G++ DVA+
Sbjct: 65 ARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAI 124
Query: 127 ISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLS 186
I V+ G + T V L ++ R + R+I ++ND+ P+ + +D +
Sbjct: 125 IEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPAR-- 182
Query: 187 DLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGS 246
+ + R+ V ++I V S
Sbjct: 183 -------RELPVYTPSDRI--GKPYVQVDPAKIVGVVRTSEPNDESD------------- 220
Query: 247 WLLFSPATEEVTEIDSAIANHICDE-----LLEDEATLQIGLGKIPEAI---LSNIKHQI 298
F+P I +A + E + +D LQ G+G + A+ L +
Sbjct: 221 ---FAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIP 277
Query: 299 NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFV-HNNELVQMKR 357
++TE++ VI L G I G + + +Y + + + ++
Sbjct: 278 AFNMYTEVIQDAVIALMKKGRIKF-----ASGCSLSVSRSVIQDIYANLDFFKDKILLRP 332
Query: 358 GTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLD 416
YSN+P I+R + INT LE DI G + S + GTR+ +G GG DF R +
Sbjct: 333 QEYSNNPEIVR-RLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNS----- 386
Query: 417 GKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAH 476
+I PS +S VP + A S V+ +++E+G ADL K+ R+RAH
Sbjct: 387 --YVSIFTTPSVMKDGKISSFVPMV---AHHDHSEHSVKVIISEWGVADLRGKNPRERAH 441
Query: 477 ALI-RIAHPQHREALEREA 494
+I + HP +R L +
Sbjct: 442 EIIDKCVHPDYRPLLRQYL 460
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
c.124.1.2 c.124.1.2
Length = 497
Score = 367 bits (943), Expect = e-122
Identities = 106/499 (21%), Positives = 178/499 (35%), Gaps = 59/499 (11%)
Query: 16 LISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPY-D 72
++S +A I+ V + G G K + A+ K + ++ ++++ SL D
Sbjct: 15 VMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLR-ISLMTGASLGNDLD 73
Query: 73 NMTPEDDCV-RRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYF-SPDVALISVS 130
E + RR+ F V RK +N G +I L++ PD+A+I +
Sbjct: 74 KQLTEAGVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAA 133
Query: 131 PPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIR 190
G + T+V S +K+VI +IN +L +H I I
Sbjct: 134 AITEQGHIVPTTSVGNSASFAIFAKQVIVEINLAHSTNLEG--LHDIYIPTYRPTRTPIP 191
Query: 191 YVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLF 250
I I + +I V
Sbjct: 192 LTRVDDRIGSTAIP---------IPPEKIVAIVINDQPDSPST----------------V 226
Query: 251 SPATEEVTEIDSAIANHICDE-----LLEDEATLQIGLGKIPEAILSNIKHQI--NLGVH 303
P E I + + + E + LQ G+G I A++ + NL ++
Sbjct: 227 LPPDGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIESPFENLTMY 286
Query: 304 TELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFV-HNNELVQMKRGTYSN 362
+E+L L ++G + G + ++ + + + ++ SN
Sbjct: 287 SEVLQDSTFDLIDAGKLRF-----ASGSSITLSPRRNADVFGNLERYKDKLVLRPQEISN 341
Query: 363 DPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKA 421
P ++R + INT LE DI G V S + GT++ +G GG DF R A A
Sbjct: 342 HPEVVR-RLGIIGINTALEFDIYGNVNSTHVGGTKMMNGIGGSGDFARNA-------HLA 393
Query: 422 ILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIR- 480
I S +S +VP + V + V +VTE G ADL + R+RA +I
Sbjct: 394 IFVTKSIAKGGNISSVVPM---VSHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIEN 450
Query: 481 IAHPQHREALEREAYEILK 499
HP ++ L
Sbjct: 451 CVHPSYQAPLLDYFEAACA 469
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest
center for structural genomics, MCSG, structural
genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2
c.124.1.2
Length = 509
Score = 235 bits (600), Expect = 2e-71
Identities = 68/514 (13%), Positives = 134/514 (26%), Gaps = 114/514 (22%)
Query: 16 LISKEQAVQF--IKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDN 73
S E+A++ +K + ++N + + + +T+ SL
Sbjct: 46 CDSLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLA-SSSLIDAHW 104
Query: 74 MTPE----DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLN--DLPMVFDRGYFSPDVALI 127
E + + + + ++ G E + + + G + DVA +
Sbjct: 105 PLIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFL 164
Query: 128 SVSPPDASGFVSLGTNVVELLSV------IRGSKRVIAQINDRMPRSLGEALVHVSEIDY 181
V D G + + S+ + +K V+ + + A + ++D
Sbjct: 165 GVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQVDL 224
Query: 182 KEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFS 241
IV V
Sbjct: 225 ----------------IVQV--------------------------------------DE 230
Query: 242 PGKGSWLLFSPATEEVTEIDSAIANHICD-----ELLEDEATLQIGLGKIPEAILSNIKH 296
G + + IA + D +LQ G G A+ ++
Sbjct: 231 VGDPEKITAGAIRLSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLED 290
Query: 297 QINLGVHTELLTPGVI-----KLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE 351
++ T G I L G+I + N
Sbjct: 291 KMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQS---------FDGDAARSLAQNPH 341
Query: 352 LVQMKRGTYSNDPAIIRQNHRM-TAINTCLEIDITGQVVSDSLG-TRIYSGFGGQVDFMR 409
+++ Y+N + R+ + + LEID+ V + + GG D
Sbjct: 342 HIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDTAA 401
Query: 410 GALTGLDGKGKAILALPSTDVSTGLSKIVPTIKP---------------GAGVVCSRAHV 454
GA I+ P + +V + G V +R +
Sbjct: 402 GA-------DLTIITAPLV--RGRIPCVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDL 452
Query: 455 QYVVTEYGCADLFAKSTRQRAHALIRIAHPQHRE 488
+ G A + + +QRA L P
Sbjct: 453 LDNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFT 486
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein.,
structural genomics, PSI-2, protein STR initiative; HET:
CIT; 2.70A {Streptococcus mutans}
Length = 519
Score = 198 bits (505), Expect = 1e-57
Identities = 58/447 (12%), Positives = 120/447 (26%), Gaps = 97/447 (21%)
Query: 82 RRLSFFVSPYTRKYVNTGAAEYIPIMLN--DLPMVFDRGYFSPDVALISVSPPDASGFVS 139
S + ++ G E I+ + DVA + DA G +
Sbjct: 120 NITSSGLRDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNAN 179
Query: 140 LGTNVVELLSV------IRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVC 193
S+ + + +V+ + +P + +++DY
Sbjct: 180 GTRGKTTCGSLGYAMIDAKYADQVVIVTDTLVPYPNTPISIPQTDVDY------------ 227
Query: 194 QVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPA 253
IV V + G +
Sbjct: 228 ----IVVV--------------------------------------DAIGDPEGIAKGAT 245
Query: 254 TEEVTEIDSAIANHICD-----ELLEDEATLQIGLGKIPEAILSNIK-HQINLGVHTEL- 306
+ IA + ++ + Q G G A+ ++ I +
Sbjct: 246 RYTKNPKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQMIKDDIKANFA 305
Query: 307 ---LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSND 363
+T +++L G+++ D +A L + + ++ Y++
Sbjct: 306 LGGITNAMVELLEEGLVDKILDVQDFDHPSAVSL--------DRNAEKHYEIDANMYASP 357
Query: 364 PAIIRQ-NHRMTAINTCLEIDITGQVVSDSLG-TRIYSGFGGQVDFMRGALTGLDGKGKA 421
+ N + + LE+D V + I GG D A +
Sbjct: 358 LSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAA-------KMS 410
Query: 422 ILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCA-DLFAKSTRQRAHALIR 480
++ P + V V+ V VVTE G A + + ++
Sbjct: 411 LVISPLV--RGRIPTFVDK---VNTVITPGTSVDVVVTEVGIAINPNRPDLIEYFKD-LK 464
Query: 481 IAHPQHREALEREAYEILKVMPKMDTT 507
+ E L+ +AY I+ +
Sbjct: 465 VPQLTIEE-LKEKAYAIVGNPQPIQYG 490
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 60/379 (15%), Positives = 112/379 (29%), Gaps = 118/379 (31%)
Query: 15 ELISK-EQAVQFIKPNSLVFVEGVVGTPK-VLMNAMYDHVKSKNIQGVTVLDVFSLYPYD 72
+ K QA+ ++P V ++GV+G+ K + LDV
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----------------ALDVCL----- 172
Query: 73 NMTPEDDCVRRLSFFVSPYTRKYVNTG---AAEYIPIMLNDLPMVFDRGYFSPDVALISV 129
++ F + ++N + E + ML L D +
Sbjct: 173 ----SYKVQCKMDFKIF-----WLNLKNCNSPETVLEMLQKLLYQIDPNW---------T 214
Query: 130 SPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALV--HVSEIDYKEKLSD 187
S D S + L + S+ +R++ L LV +V +
Sbjct: 215 SRSDHSSNIKLRIH-----SIQAELRRLLKS--KPYENCL---LVLLNVQN-------AK 257
Query: 188 LIRYV---CQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGK 244
C++ L + R + + L + ++ +P + LL
Sbjct: 258 AWNAFNLSCKI-L---LTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----- 307
Query: 245 GSWLLFSPAT--EEVTEIDS-AIANHICDELLEDEAT-----LQIGLGKIPEAILSNIKH 296
+L P EV + ++ I E + D + K+ I S++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 297 QINLGVHTELLTPGVIK-LFNSGVI--NNSKKSIDRGQITATLL--LGDKPLYDFV---- 347
L P + +F+ + ++ I LL + + V
Sbjct: 366 ----------LEPAEYRKMFDRLSVFPPSAH-------IPTILLSLIWFDVIKSDVMVVV 408
Query: 348 ---HNNELV--QMKRGTYS 361
H LV Q K T S
Sbjct: 409 NKLHKYSLVEKQPKESTIS 427
Score = 52.5 bits (125), Expect = 3e-07
Identities = 79/476 (16%), Positives = 138/476 (28%), Gaps = 171/476 (35%)
Query: 97 NTGAAEY-----IPIMLNDLPMVFD--------RGYFSP-DVALISVSPPDASGFVSLGT 142
TG +Y + + + FD + S ++ I +S SG
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG------ 63
Query: 143 NVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDY-----------KEKLSDLIRY 191
+ L + + + Q + + E L I+Y ++ Y
Sbjct: 64 -TLRLFWTLLSKQEEMVQ------KFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 192 VCQV---YLIVCVLIRM--PR-----SLGKALVHVSEIDY-GVEVSYELFSPGKGGWLLF 240
+ Q Y V + R L +AL+ + ++ G G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--------GVLGS--- 161
Query: 241 SPGKGSWLLFSPATEEV---TEIDSAIANHI-------CDELLEDEATLQIGLGKIPEAI 290
GK +W+ +V ++ + I C+ E L++
Sbjct: 162 --GK-TWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEM--------- 201
Query: 291 LSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN 350
L + +QI+ + IKL I++ + + R LL KP + N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRR-------LLKSKP-----YEN 245
Query: 351 EL-----VQMKRGTYSNDPAIIRQNHRMTAIN-TCLEIDIT--GQVVSDSLGTRIYSGFG 402
L VQ + A N +C +I +T + V+D L +
Sbjct: 246 CLLVLLNVQ--------NAKAWN------AFNLSC-KILLTTRFKQVTDFLSAATTTHI- 289
Query: 403 GQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEY 461
+D LT + K++L D L + V T P S
Sbjct: 290 -SLDHHSMTLT--PDEVKSLLLK-YLDCRPQDLPREVLTTNP---RRLS----------- 331
Query: 462 GCADLFAKSTRQRAHALIRIAHPQHR----------EALE----REAYEILKVMPK 503
+ A+S R H LE R+ ++ L V P
Sbjct: 332 ----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Score = 32.5 bits (73), Expect = 0.39
Identities = 36/242 (14%), Positives = 74/242 (30%), Gaps = 76/242 (31%)
Query: 5 KHYSTTTSSMELISKEQAVQFIKPNSL--------VFVEGVVGTPKVL------------ 44
KH + + +I E ++ ++P VF +L
Sbjct: 348 KHVNCDKLT-TII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 45 ---MNAMYDHVKS---KNIQGVTVLDVFSLYP-YDNMTPEDDCVRRL-SFFVSPY--TRK 94
+N + H S K + T S+ Y + + + L V Y +
Sbjct: 405 MVVVNKL--HKYSLVEKQPKEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 95 YVNTGAAEYIPIMLNDLPMVFDRGYFSPDVA--LISVSPPD-ASGFVSL----------- 140
+ + +DL + YF + L ++ P+ + F +
Sbjct: 459 FDS-----------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 141 ---GTN------VVELLSVIRGSKRVIAQ---INDRMPRSLGEALVHVSEIDYKEKLSDL 188
T ++ L ++ K I +R+ ++ + L + E K +DL
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 189 IR 190
+R
Sbjct: 568 LR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 89/549 (16%), Positives = 163/549 (29%), Gaps = 188/549 (34%)
Query: 10 TTSSMELISKEQAVQFIKPNSLVFV-----EGVVGTPKVLMNAMYDHVKSKNIQGVTVLD 64
T+ EL+ K F L +V VG ++N ++ ++G D
Sbjct: 54 PTTPAELVGK-----F-----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN---D 100
Query: 65 VFSL---YPYDNMTPEDDCVRRL-SFFVS------PYTRKY-------VNTGAAEYIPIM 107
+ +L +N T + ++ + P+ +K V G A+ + I
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 108 ---------LNDLPMVFDRGYFSPDVALISVS----------PPDASGFVSLGTNVVELL 148
+L ++ Y LI S DA + G N++E L
Sbjct: 161 GGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 149 S--VIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRM- 205
K + I P S L +I+ Y++ L+
Sbjct: 220 ENPSNTPDKDYLLSI----PISC--------------PLIGVIQLAH--YVVTAKLLGFT 259
Query: 206 PRSLGKALVHVSEIDYGVEVSYELFSPGKGGW------------LLFSPGKGSWLLFSPA 253
P L L + G+ V+ + W +LF G + +
Sbjct: 260 PGELRSYLKGATGHSQGL-VTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 254 TEEVTEIDSAIANHICDELLEDEAT--LQI-GLGKIPEAILSNIKHQINLGVHTELLTPG 310
+ + ++ ++ N+ E + L I L + E + + + N + L P
Sbjct: 318 SLPPSILEDSLENN------EGVPSPMLSISNLTQ--EQVQDYVN-KTN----SHL--PA 362
Query: 311 ----VIKLFNSG---VINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSND 363
I L N V++ +S LY N L + K
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQS----------------LYGL--NLTLRKAKA------ 398
Query: 364 PAIIRQN----------------------HR--MTAINTCLEIDITGQVVS---DSLGTR 396
P+ + Q+ H + + + D+ VS +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 397 IYSGFGGQVDFMRGALTGLDGKG-KAILALP----------STDV-------STGLSKIV 438
+Y F G D +R + + I+ LP +T + ++GL +
Sbjct: 459 VYDTFDGS-D-LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 439 PTIKPGAGV 447
K G GV
Sbjct: 517 HRNKDGTGV 525
Score = 44.7 bits (105), Expect = 8e-05
Identities = 60/364 (16%), Positives = 99/364 (27%), Gaps = 136/364 (37%)
Query: 207 RSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEID--SAI 264
R L L H S +++ + V F F+ L TE D +
Sbjct: 7 RPL--TLSHGS-LEHVLLVPTASFFIASQLQEQFN----KIL--PEPTEGFAADDEPTTP 57
Query: 265 A-------NHICDELLEDEAT-----LQIGLGKIPEAILSNIKHQINLGVHT---ELLTP 309
A ++ + + L + L + L +H +LL
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN------DIHALAAKLLQE 111
Query: 310 GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ 369
L K + + ITA ++ +P ++ A+ R
Sbjct: 112 NDTTL-------VKTKELIKNYITARIMAK-RPF---------------DKKSNSALFR- 147
Query: 370 NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQ------------------------V 405
A+ G ++ + FGGQ +
Sbjct: 148 -----AVGE-------GNA-------QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 406 DFMRGALTGLD----------GKGKAILA-------LPSTD--VSTGLSKIVPTIKPGAG 446
F L+ L +G IL P D +S +S P I
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS--CPLI----- 241
Query: 447 VVCSRAHVQYVVT--EYGC--ADLFA--KSTRQRAHALIR---IAHPQHREALEREAYEI 497
V AH YVVT G +L + K + L+ IA E+ +
Sbjct: 242 GVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 498 LKVM 501
+ V+
Sbjct: 300 ITVL 303
Score = 43.1 bits (101), Expect = 2e-04
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 50/150 (33%)
Query: 168 SLGE--ALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEV 225
SLGE AL ++++ + L+ V R G + D
Sbjct: 1763 SLGEYAALASLADVM---SIESLVEVVFY---------R-----GMTMQVAVPRDELGRS 1805
Query: 226 SYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSA-------IANHICDELLEDEAT 278
+Y + + +PG+ + A + V E I N+
Sbjct: 1806 NYGMIA--------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV-------EN 1850
Query: 279 LQI-------GLGKIPEAILSNIKHQ-INL 300
Q L + +L+ IK Q I++
Sbjct: 1851 QQYVAAGDLRALDTVTN-VLNFIKLQKIDI 1879
Score = 35.0 bits (80), Expect = 0.061
Identities = 47/276 (17%), Positives = 84/276 (30%), Gaps = 81/276 (29%)
Query: 211 KALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWL--LFSPATEEVTEIDSAIANHI 268
+A H + YG + + + + F KG + +S E I
Sbjct: 1648 RADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 269 CDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE-----LLTPG-----VIKLFNSG 318
E+ +E + + +LS T+ L +K + G
Sbjct: 1707 FKEI--NEHSTSYTFRS-EKGLLS----------ATQFTQPALTLMEKAAFEDLK--SKG 1751
Query: 319 VINNSKK----SIDRGQITATLLL----GDKPLYDFVHNNELVQMKRGTYSND--P--AI 366
+I S+ G+ A L + V E+V RG P +
Sbjct: 1752 LIPADATFAGHSL--GEYAA---LASLADVMSIESLV---EVVF-YRGMTMQVAVPRDEL 1802
Query: 367 IRQNHRMTAIN------TCLEIDITGQVVSDSLGTRIYSGF----------GGQ------ 404
R N+ M AIN + + + Q V + +G R +G+ Q
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKR--TGWLVEIVNYNVENQQYVAAGD 1858
Query: 405 ---VDFMRGALTGLDGKGKAILALPSTDVSTGLSKI 437
+D + L + + I+ L S L ++
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQ---KSLSLEEV 1891
Score = 29.2 bits (65), Expect = 3.6
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 19/81 (23%)
Query: 12 SSMELISKEQAVQFI------KPNSLVFV-----EG--VV--GTPK---VLMNAMYDHVK 53
+ ++A+Q++ + LV + E V G + + N + + +K
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL-NFIK 1873
Query: 54 SKNIQGVTVLDVFSLYPYDNM 74
+ I + + SL +
Sbjct: 1874 LQKIDIIELQKSLSLEEVEGH 1894
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast
structural genomi consortium, NESG, PSI-biology, protein
structure initiative function; NMR {Nostoc SP}
Length = 110
Score = 31.4 bits (71), Expect = 0.21
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 148 LSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYV--CQVYLIVCVLIRM 205
+ R ++ Q+ M + L +A ++E +Y+E L + Y+ + V I
Sbjct: 20 VQFRRTQGKIFLQV---MWKYLEQASFPMNETEYQEHLDSVANYLHALGGAVQVKTFITQ 76
Query: 206 PRS---LGKAL 213
+ LGKA+
Sbjct: 77 TKERPRLGKAV 87
>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A
{Bombyx mori}
Length = 216
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 25/97 (25%)
Query: 438 VPTIKPGAGVVC-SRAHVQYVVTEYGCAD-LFAKSTRQRA-------------------- 475
VPT+ V+ SRA Y+ +YG D + K ++RA
Sbjct: 55 VPTLDDNNFVLWESRAIACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAI 114
Query: 476 -HALIRIAHPQHREALEREAYEILKVMPKM--DTTYL 509
++ + + +++L+ + L + + T ++
Sbjct: 115 CFPILFLGETEIKQSLKDDLNSTLSFLNQFLEKTKWV 151
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein
degradation, NUCL excision repair, peptide:N-glycanase;
1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Length = 295
Score = 29.7 bits (66), Expect = 2.5
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 192 VCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSW 247
C + R+LG +V DY V E++SP + WL +
Sbjct: 142 RCGEW--ANCFTLCCRALGFEARYVW--DYTDHVWTEVYSPSQQRWLHCDACEDVC 193
>2qea_A Putative general stress protein 26; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
oxidoreductase; 2.46A {Jannaschia SP}
Length = 160
Score = 28.4 bits (63), Expect = 3.4
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 86 FFVSPYTRKYVN-TGAAEYI--PIMLNDL--PMV---FDRGYFSPDVALISVSPPDASGF 137
Y + G E L++ + FD G PDV L+ +P
Sbjct: 68 VVSDDGEGLYADLDGTLERSTDREALDEFWSFVADAWFDGGQHDPDVCLLKFTPASGEIS 127
Query: 138 VSLGTNVVELLSVIRGS 154
++ G L + +
Sbjct: 128 ITEGGGARFLYEIAKAH 144
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Length = 244
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 438 VPTIKPGAGVVC-SRAHVQYVVTEYGCAD-LFAKSTRQRAH 476
+PT+K G ++ S A + Y+ +Y D + + RA
Sbjct: 54 LPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARAR 94
>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11;
2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_2*
1hrv_2* 1na1_B* 1hri_2* 1r08_2* 1r09_2* 1rmu_2 1ruc_2*
1rud_2* 1rue_2* 1ruf_2 1rug_2* 1ruh_2* 1rui_2* 1ruj_2
1rvf_2 1vrh_2* 2r04_2* 2r06_2* 2r07_2* ...
Length = 262
Score = 28.7 bits (64), Expect = 4.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N P D R +S V P V TGA +PI + PM
Sbjct: 202 PYINSVPIDSMTRHNNVSLMVIPIAPLTVPTGATPSLPITVTIAPM 247
>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification,
transferase-transfera inhibitor complex; HET: GGL CYW;
2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 28.3 bits (64), Expect = 4.6
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 438 VPTIKPGAGVVC-SRAHVQYVVTEYGCADLFAKSTRQRAHAL 478
VP ++ G + SRA +Y + L + + A
Sbjct: 54 VPALQDGDLYLFESRAICKYAARKNKPELLREGNLEEAAMVD 95
>2hkv_A Hypothetical protein; putative member of the DINB family,
structural genomics, JOI for structural genomics, JCSG;
1.70A {Exiguobacterium sibiricum} SCOP: a.213.1.2
Length = 149
Score = 27.7 bits (61), Expect = 5.1
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 146 ELLSVIRGSKRVIAQINDR----MP----RSLGEALVHVSEI---DYKEKLSDLIRYVCQ 194
+ +R ++ +I I P RS+ E VH++ + D + + Q
Sbjct: 12 HVGVGVRTTRDLIRLIQPEDWDKRPISGKRSVYEVAVHLAVLLEADLRIATGATADEMAQ 71
Query: 195 VYLIVCVLIRMPRSLGK---ALVHVSEIDYGVEVSYELFSPGKGGWLL 239
Y + + ++ L + D+ E +Y + GWLL
Sbjct: 72 FYAVPVLPEQLVDRLDQSWQYYQDRLMADFSTETTYWGVTDSTTGWLL 119
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512,
structural genomics, Pro structure initiative, PSI,
CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB:
2q4k_A
Length = 251
Score = 28.2 bits (62), Expect = 5.8
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 245 GSWLLFSPATEEVTEIDSAIANHICDELL 273
G WL+ ++ + IA + + L
Sbjct: 127 GKWLMHLAPGFKLDHAWAGIARAVVEGRL 155
>1qqp_2 FMDV, protein (genome polyprotein); heparan sulphate,
virus-receptor interactions/protein carbohydrate
interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth
disease virus} PDB: 1fod_2 1bbt_2* 1fmd_2 1qgc_2 1zba_2*
1zbe_2 2wzr_2
Length = 218
Score = 27.3 bits (60), Expect = 9.4
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
P+ + D + V VNT A I + N P
Sbjct: 161 PFVGVNRYDQYKVHKPWTLVVMVVAPLTVNTEGAPQIKVYANIAPT 206
>1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD,
uncoating, virus-receptor interaction, WIN compound,
virus/viral protein; HET: MYR W71; 2.90A {Human
coxsackievirus A9} PDB: 2x5i_B* 3iyp_C* 1mqt_B* 1oop_B*
1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B
Length = 261
Score = 27.5 bits (61), Expect = 10.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N P D+ R + V P+ + A+ Y+PI + PM
Sbjct: 203 PYINSVPMDNMFRHYNFTLMVIPFVKLDYADTASTYVPITVTVAPM 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,911,336
Number of extensions: 507696
Number of successful extensions: 1113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 53
Length of query: 509
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 411
Effective length of database: 3,965,535
Effective search space: 1629834885
Effective search space used: 1629834885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)