RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2323
(509 letters)
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 213 bits (545), Expect = 1e-66
Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 28/255 (10%)
Query: 258 TEIDSAIANHICD---------ELLEDEATLQIGLGKIPEAILSNI--KHQINLGVHTEL 306
AIANH+ D + LQ G+G I A++ + NL +++E+
Sbjct: 7 DGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIESPFENLTMYSEV 66
Query: 307 LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAI 366
L L ++G + G + ++ + + + R ++
Sbjct: 67 LQDSTFDLIDAGKLRF-----ASGSSITLSPRRNADVFGNLERYKDKLVLRPQEISNHPE 121
Query: 367 IRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKAILAL 425
+ + + INT LE DI G V S + GT++ +G GG DF R A AI
Sbjct: 122 VVRRLGIIGINTALEFDIYGNVNSTHVGGTKMMNGIGGSGDFARNA-------HLAIFVT 174
Query: 426 PSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIR-IAHP 484
S +S +VP + V + V +VTE G ADL + R+RA +I HP
Sbjct: 175 KSIAKGGNISSVVPM---VSHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIENCVHP 231
Query: 485 QHREALEREAYEILK 499
++ L
Sbjct: 232 SYQAPLLDYFEAACA 246
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 269
Score = 176 bits (448), Expect = 2e-52
Identities = 42/269 (15%), Positives = 75/269 (27%), Gaps = 33/269 (12%)
Query: 259 EIDSAIANHICDEL-----LEDEATLQIGLGKIPEAILSNIK-HQINLGVHTE----LLT 308
+ IA + + D +LQ G G A+ ++ + +T
Sbjct: 9 PRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGIT 68
Query: 309 PGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDP-AII 367
++ L G+I T N +++ Y+N
Sbjct: 69 GTMVDLHEKGLIKALLD---------TQSFDGDAARSLAQNPHHIEISTNQYANPASKGA 119
Query: 368 RQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGA-----LTGLDGKGKA 421
+ + LEID+ V + + GG D GA L
Sbjct: 120 ACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDTAAGADLTIITAPLVRGRIP 179
Query: 422 ILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIR 480
+ T S V G V +R + + G A + + +QRA L
Sbjct: 180 CVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLTG 239
Query: 481 IAHPQHREALEREAYEILKVMPKMDTTYL 509
P ++ V+ D + +
Sbjct: 240 KPQPIEFTD------RVVAVVRYRDGSVI 262
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 221
Score = 123 bits (310), Expect = 3e-33
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 6/160 (3%)
Query: 16 LISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPY-- 71
++S +A I+ V + G G K + A+ K + ++ ++++ SL
Sbjct: 13 VMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLR-ISLMTGASLGNDLD 71
Query: 72 DNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLP-MVFDRGYFSPDVALISVS 130
+T RR+ F V RK +N G +I L++ + + PD+A+I +
Sbjct: 72 KQLTEAGVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAA 131
Query: 131 PPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLG 170
G + T+V S +K+VI +IN +L
Sbjct: 132 AITEQGHIVPTTSVGNSASFAIFAKQVIVEINLAHSTNLE 171
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 221
Score = 91.7 bits (227), Expect = 7e-22
Identities = 35/254 (13%), Positives = 82/254 (32%), Gaps = 41/254 (16%)
Query: 260 IDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGV 319
+ I E ED +G+G IP + I + + + +E +G+
Sbjct: 2 VRERIIKRAALEF-EDGMYANLGIG-IPLLASNFISPNMTVHLQSE-----------NGI 48
Query: 320 INNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTC 379
+ + + G + V A+IR H +
Sbjct: 49 LGLGPYPLQNEVDADLINAG----KETVTVLPGASYFSSD--ESFAMIRGGHVNLTMLGA 102
Query: 380 LEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVP 439
+++ G + + + ++ G GG +D + A K K ++ + +
Sbjct: 103 MQVSKYGDLANWMIPGKLVKGMGGAMDLVSSA------KTKVVVTMEHSAK----GNAHK 152
Query: 440 TIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEI-- 497
++ + + V ++TE D+ R++ LI + + + +++
Sbjct: 153 IMEKCTLPLTGKQCVNRIITEKAVFDV----DRKKGLTLIELWEGLTVDDI-KKSTGCDF 207
Query: 498 -----LKVMPKMDT 506
L M ++ T
Sbjct: 208 AVSPKLIPMQQVTT 221
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 33.3 bits (75), Expect = 0.046
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 246 SWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTE 305
+++L T V +D + A I D L G+ IL+ H + G + E
Sbjct: 14 AYILHDEDTGTVGVVDPSEAEPIIDSLKR--------SGRNLTYILNTHHHYDHTGGNLE 65
Query: 306 LLTPGVIKLFNSGVINNSKKSIDR 329
L K+ S + + ID
Sbjct: 66 LKDRYGAKVIGSAMDKDRIPGIDM 89
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 29.4 bits (66), Expect = 0.94
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N P D+ R + V P+ + A+ Y+PI + PM
Sbjct: 262 PYINSVPMDNMFRHYNFTLMVIPFVKLDYADTASTYVPITVTVAPM 307
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 28.6 bits (64), Expect = 1.8
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N D V+ + P + ++ IPI + PM
Sbjct: 273 PYVNALAIDSMVKHNNWGIAILPLSPLDFAQDSSVEIPITVTIAPM 318
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 107
Score = 27.0 bits (60), Expect = 2.1
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 144 VVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQ 194
+VE L + ++ +I D +P L + + + E +++ V +
Sbjct: 55 LVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRK 105
>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Length = 295
Score = 28.2 bits (63), Expect = 2.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N P D R +S V P V TGA +PI + PM
Sbjct: 235 PYINSVPIDSMTRHNNVSLMVIPIAPLTVPTGATPSLPITVTIAPM 280
>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 280
Score = 27.8 bits (62), Expect = 3.3
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N+ P + + V+ ++ +G++ + I + P+
Sbjct: 221 PYVNIAPTSSWTQHANWTLVVAVFSPLQYASGSSSDVQITASIQPV 266
>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 307
Score = 27.5 bits (61), Expect = 3.8
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 70 PYDNMTPEDDCVRR--LSFFVSPYTRKYVNTGAAEYIPIMLNDLPM 113
PY N+ P + + ++ +TGA+ + I + P+
Sbjct: 247 PYVNIAPTSSWTQHASWTLVIAVVAPLTYSTGASTSLDITASIQPV 292
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 26.7 bits (59), Expect = 4.2
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 144 VVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYK---EKLSDLIRYV 192
V LL + K +A + + P + E+ + ++ + E+L ++ +
Sbjct: 70 VRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDI 121
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 26.0 bits (57), Expect = 8.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 113 MVFDRGYFSP 122
M FD+GY S
Sbjct: 2 MRFDKGYISG 11
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId:
274]}
Length = 145
Score = 25.8 bits (57), Expect = 8.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 113 MVFDRGYFSP 122
FD+GY SP
Sbjct: 2 YQFDKGYISP 11
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,878,127
Number of extensions: 90724
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 21
Length of query: 509
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 420
Effective length of database: 1,185,626
Effective search space: 497962920
Effective search space used: 497962920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)