BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2324
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 153 bits (386), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 100/134 (74%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A+LS +K + +LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++ T L+G K LYD
Sbjct: 219 IPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYD 278
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
F NN V++K Y N P+++ Q +M IN CL++D GQ+VSDS+GT+ +SG GGQV
Sbjct: 279 FAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQV 338
Query: 122 DFMRGALTGLDGKG 135
DF+RGA +DGKG
Sbjct: 339 DFVRGASMSIDGKG 352
>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
(Abft-2) From Porphyromonas Gingivalis. Northeast
Structural Genomics Consortium Target Pgr26
Length = 439
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 88/126 (69%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A+L ++ +LG+HTE+ T GV+++ G+IN KK++ ++ +L+ G K LYD
Sbjct: 220 IPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYD 279
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
FV+NN +++ Y N+P +I +N RM +IN+CLE+D+ GQ S+S+G +SG GGQV
Sbjct: 280 FVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQV 339
Query: 122 DFMRGA 127
DF+RGA
Sbjct: 340 DFLRGA 345
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 86/126 (68%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A+LS + +LGVHTEL + G+++L GVINN+KK G++ LG + LYD
Sbjct: 214 IPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYD 273
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
+V +N V ND +IIR+N + AIN+ L++D+TGQV +DS+GT+IYSG GGQ
Sbjct: 274 YVDDNPAVIFXDIEQVNDTSIIRKNPNVXAINSALQVDLTGQVCADSIGTKIYSGVGGQX 333
Query: 122 DFMRGA 127
DF+RGA
Sbjct: 334 DFIRGA 339
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 89/135 (65%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A L +K + +LG+HTE + GV++L SGVI KK++ G+ AT L G + +Y
Sbjct: 223 IPDAALLFLKDKKDLGIHTEXFSDGVVELVRSGVITGKKKTLHPGKXVATFLXGSEDVYH 282
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
F+ N V++ Y NDP +I QN +IN+C+EID+ GQVVS+ +G++ +SG GGQV
Sbjct: 283 FIDKNPDVELYPVDYVNDPRVIAQNDNXVSINSCIEIDLXGQVVSECIGSKQFSGTGGQV 342
Query: 122 DFMRGALTGLDGKGL 136
D++RGA +GK +
Sbjct: 343 DYVRGAAWSKNGKSI 357
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 83/135 (61%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
+P + +K + +LG+HTE+L PG++ L GV+ N +K++DRG+ T +G + +Y+
Sbjct: 245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYE 304
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
+++++ + + Y NDP II QN + +IN L+ID+TG S+ + YS GGQ+
Sbjct: 305 YLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQL 364
Query: 122 DFMRGALTGLDGKGL 136
DF+RGA G+ +
Sbjct: 365 DFVRGAYASKGGRSI 379
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3S8D|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 80/135 (59%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
+P + +K + +LG+HTE+L PG++ L GV+ N +K++DRG+ T G + Y+
Sbjct: 245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAXGQQEXYE 304
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
+++++ + + Y NDP II QN + +IN L+ID+TG S+ YS GGQ+
Sbjct: 305 YLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHXLGHQYSASGGQL 364
Query: 122 DFMRGALTGLDGKGL 136
DF+RGA G+ +
Sbjct: 365 DFVRGAYASKGGRSI 379
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 19 HTELLTPGVIKLFNSGVI---NNSKKSIDRG---QITATLLLGDKPLYDFVHNNELVQMK 72
+TE++ VI L G I + S+ R I A L DF + L++ +
Sbjct: 282 YTEVIQDAVIALXKKGRIKFASGCSLSVSRSVIQDIYANL--------DFFKDKILLRPQ 333
Query: 73 RGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGL 131
YSN+P I+R+ +T INT LE DI G + S + GTR +G GG DF R + +
Sbjct: 334 E--YSNNPEIVRRLGVIT-INTALEADIFGNINSTHVSGTRXXNGIGGSGDFTRNSYVSI 390
>pdb|2G39|A Chain A, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
pdb|2G39|B Chain B, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
Length = 497
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 15 NLGVHTELLTPGVIKLFNSGVIN-NSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKR 73
NL ++E+L L ++G + S SI + G+ Y ++LV ++
Sbjct: 282 NLTXYSEVLQDSTFDLIDAGKLRFASGSSITLSPRRNADVFGNLERY----KDKLV-LRP 336
Query: 74 GTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGA 127
SN P ++R+ + INT LE DI G V S + GT+ +G GG DF R A
Sbjct: 337 QEISNHPEVVRR-LGIIGINTALEFDIYGNVNSTHVGGTKXXNGIGGSGDFARNA 390
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 2 IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
+ A+L +K NL ++E++ G++ + +SG + + S A + ++
Sbjct: 273 VANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNR-- 330
Query: 60 YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFG 118
DF + + +++ SN P IIR+ A+N +E DI G V S +G+++ +G G
Sbjct: 331 MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIG 387
Query: 119 GQVDFMRGA 127
G DF R +
Sbjct: 388 GSGDFARSS 396
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
Length = 505
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 2 IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
+ A+L +K NL ++E++ G++ + +SG + + S A + ++
Sbjct: 273 VANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNR-- 330
Query: 60 YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFG 118
DF + + +++ SN P IIR+ A+N +E DI G V S +G+++ +G G
Sbjct: 331 MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIG 387
Query: 119 GQVDFMRGA 127
G DF R +
Sbjct: 388 GSGDFARSS 396
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 2 IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
+ A+L +K NL ++E++ G++ + +SG + + S A + ++
Sbjct: 273 VANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNR-- 330
Query: 60 YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFG 118
DF + + +++ SN P IIR+ A+N +E DI G V S +G+++ +G G
Sbjct: 331 MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIG 387
Query: 119 GQVDFMRGA 127
G DF R +
Sbjct: 388 GSGDFARSS 396
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 2 IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
+ A+L +K NL ++E++ G++ + +SG + + S A + ++
Sbjct: 273 VANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNR-- 330
Query: 60 YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFG 118
DF + + +++ SN P IIR+ A+N +E DI G V S +G+++ +G G
Sbjct: 331 MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIG 387
Query: 119 GQVDFMRGA 127
G DF R +
Sbjct: 388 GSGDFARSS 396
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 2 IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
+ A+L +K NL ++ ++ G++ + +SG + + S A + ++
Sbjct: 273 VANAVLEGLKEGPFENLVGYSAVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNR-- 330
Query: 60 YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFG 118
DF + + +++ SN P IIR+ A+N +E DI G V S +G+++ +G G
Sbjct: 331 MDFFRSK--IILRQQDVSNSPGIIRR-LGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIG 387
Query: 119 GQVDFMRGA 127
G DF R +
Sbjct: 388 GSGDFARSS 396
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 31 FNSGVINNSKKSIDRGQITATLLLGDKPLYDFV---HNNELVQMKRGTYSNDPAIIRQNH 87
FN IN +SID T T G K YD++ +LV G N +I H
Sbjct: 69 FNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEH 128
Query: 88 RMTAINTCLEIDIT-GQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN 146
+ E+ G VV ++ S FG +F L +G++Y++ +
Sbjct: 129 ALETQKKLQELYANPGPVVIGAIPG--VSXFGPAYEFALMLHYELKKRGIRYKVPMTFIT 186
Query: 147 SMPLLG 152
S P LG
Sbjct: 187 SEPYLG 192
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 31 FNSGVINNSKKSIDRGQITATLLLGDKPLYDFV---HNNELVQMKRGTYSNDPAIIRQNH 87
FN IN +SID T T G K YD++ +LV G N +I H
Sbjct: 69 FNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEH 128
Query: 88 RMTAINTCLEIDIT-GQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN 146
+ E+ G VV ++ S FG +F L +G++Y++ +
Sbjct: 129 ALETQKKLQELYANPGPVVIGAIPG--VSXFGPAYEFALMLHYELKKRGIRYKVPMTFIT 186
Query: 147 SMPLLG 152
S P LG
Sbjct: 187 SEPYLG 192
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 90 TAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMP 149
T T D G V S SL +Y+ GG+ DF +T L +G+ ++ EDNS+
Sbjct: 294 TGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTN--VTSL--RGVYITSVLSEDNSIQ 349
Query: 150 LL 151
+
Sbjct: 350 TM 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,464,303
Number of Sequences: 62578
Number of extensions: 222764
Number of successful extensions: 411
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 19
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)