Query psy2324
Match_columns 170
No_of_seqs 128 out of 801
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 21:42:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03458 YgfH_subfam succinat 100.0 1.6E-55 3.4E-60 402.7 14.2 154 1-170 258-427 (485)
2 KOG2828|consensus 100.0 3.1E-52 6.7E-57 370.2 7.3 168 1-170 237-415 (454)
3 COG0427 ACH1 Acetyl-CoA hydrol 100.0 2.5E-51 5.4E-56 373.3 11.8 158 1-170 268-437 (501)
4 PF13336 AcetylCoA_hyd_C: Acet 100.0 1.1E-50 2.4E-55 323.8 7.9 114 55-170 1-126 (154)
5 TIGR01110 mdcA malonate decarb 100.0 7.6E-44 1.6E-48 326.7 8.0 149 1-169 251-459 (543)
6 TIGR01584 citF citrate lyase, 100.0 8.6E-42 1.9E-46 311.6 9.9 150 1-168 261-426 (492)
7 TIGR02428 pcaJ_scoB_fam 3-oxoa 99.9 2.6E-25 5.6E-30 184.1 7.6 132 1-169 25-177 (207)
8 PF04223 CitF: Citrate lyase, 98.5 7.5E-08 1.6E-12 88.1 4.3 147 3-169 240-404 (466)
9 COG2057 AtoA Acyl CoA:acetate/ 97.7 0.00015 3.2E-09 61.8 8.1 80 82-168 94-181 (225)
10 COG3051 CitF Citrate lyase, al 97.4 0.00017 3.7E-09 65.9 4.2 149 4-169 286-449 (513)
11 PF14553 YqbF: YqbF, hypotheti 59.9 5.3 0.00012 26.0 1.2 18 56-73 22-39 (43)
12 TIGR01110 mdcA malonate decarb 53.3 87 0.0019 30.3 8.5 141 2-162 53-202 (543)
13 COG4670 Acyl CoA:acetate/3-ket 53.3 2.8 6.1E-05 39.8 -1.3 40 90-129 365-404 (527)
14 KOG3822|consensus 51.4 15 0.00032 34.2 3.0 72 90-167 392-471 (516)
15 smart00592 BRK domain in trans 47.2 13 0.00028 24.1 1.4 29 46-74 14-43 (45)
16 COG1788 AtoD Acyl CoA:acetate/ 47.1 39 0.00084 29.0 4.7 66 1-75 30-101 (220)
17 PF07533 BRK: BRK domain; Int 41.3 9.8 0.00021 24.8 0.2 28 46-73 16-44 (46)
18 PF13278 DUF4066: Putative ami 38.6 29 0.00062 26.6 2.5 66 3-80 79-146 (166)
19 TIGR03458 YgfH_subfam succinat 38.2 64 0.0014 30.4 5.2 119 2-149 28-161 (485)
20 TIGR03473 HpnK hopanoid biosyn 37.6 20 0.00043 31.0 1.6 28 12-40 7-34 (283)
21 COG4989 Predicted oxidoreducta 35.9 33 0.00071 30.6 2.7 68 18-86 185-272 (298)
22 PRK09920 acetyl-CoA:acetoacety 32.3 86 0.0019 26.5 4.6 57 1-66 30-91 (219)
23 PF04794 YdjC: YdjC-like prote 27.7 31 0.00067 29.0 1.1 44 14-68 8-53 (261)
24 COG4837 Uncharacterized protei 27.5 30 0.00065 26.4 0.9 33 49-81 15-57 (106)
25 PF01144 CoA_trans: Coenzyme A 25.8 73 0.0016 25.8 3.0 91 1-110 27-123 (217)
26 PF03562 MltA: MltA specific i 25.6 51 0.0011 26.7 2.0 41 29-91 116-156 (158)
27 cd08486 PBP2_CbnR The C-termin 25.1 96 0.0021 23.1 3.4 37 2-38 16-53 (198)
28 TIGR01584 citF citrate lyase, 24.1 70 0.0015 30.5 2.9 134 3-163 59-209 (492)
29 PRK10333 5-formyltetrahydrofol 20.3 1.9E+02 0.004 23.2 4.3 58 106-167 120-179 (182)
30 COG2832 Uncharacterized protei 20.3 25 0.00055 27.5 -0.7 20 50-69 37-56 (119)
No 1
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=100.00 E-value=1.6e-55 Score=402.67 Aligned_cols=154 Identities=27% Similarity=0.413 Sum_probs=142.1
Q ss_pred CchHHHHHhcccC--CCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhccc----CCceeeecc
Q psy2324 1 KIPEAILSNIKHQ--INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHN----NELVQMKRG 74 (170)
Q Consensus 1 ~ipnAV~~~L~~~--kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~----np~v~~~p~ 74 (170)
+|||||+.+|+++ ||||||||||+|++++|+|+|+|||+ ++++|++|++.||+|+|+ ||.|+|+|+
T Consensus 258 ~ipnAv~~~L~~~~~kdLgihtem~~d~~~~L~~~G~i~~~--------~v~~~~~g~~~~~~~~~~~d~~n~~~~~~p~ 329 (485)
T TIGR03458 258 NIANAVLAGLGDSPFENLTMYTEVIQDSMLDLIDSGKLTFA--------SATSLTLSPEALERFYANIDFYRDKIVLRPQ 329 (485)
T ss_pred hHHHHHHHHHhcCCCCCceEEeeechHhHHHHHHCCCcccc--------eEEEEEecHHHHHHHHhhhhhcCCcEEEecc
Confidence 5899999999988 99999999999999999999999987 599999999888888887 999999999
Q ss_pred ceeccHHHHHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------
Q psy2324 75 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------ 147 (170)
Q Consensus 75 ~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------ 147 (170)
+|||||++|+|+ +|+|||||||||||||||||+ +|+|++||+|||+||+|||++| |||||||+++
T Consensus 330 ~~tn~p~vi~~~-~~vsiNsaievDL~Gqv~se~~~g~~~~sG~GGq~DF~rgA~~S-------iial~st~~~g~~S~I 401 (485)
T TIGR03458 330 EISNHPEIIRRL-GVIAINTAIEADIYGNVNSTHVMGTKMMNGIGGSGDFARNAYLS-------IFMTPSIAKGGKISSI 401 (485)
T ss_pred ceeCCHHHHhhC-CeEEEehheEeccCceeeeecccCceEEecCccHHHHHHHHhhh-------hEEeeeecCCCceeeE
Confidence 999999999999 999999999999999999998 7999999999999999999988 8999999986
Q ss_pred CCCCC---CCCCCCceEEeeeeeccC
Q psy2324 148 MPLLG---SNPGPPDYQASAWKIGLI 170 (170)
Q Consensus 148 ~~~l~---s~~~~~~~~~te~gia~~ 170 (170)
.|.|. +.-..+||||||||||++
T Consensus 402 vp~l~~vt~~r~dv~~vVTE~G~A~L 427 (485)
T TIGR03458 402 VPMVSHVDHTEHDVMVIVTEQGLADL 427 (485)
T ss_pred eecCCCcCCchhhCCEEEecCEEEEe
Confidence 45553 222489999999999974
No 2
>KOG2828|consensus
Probab=100.00 E-value=3.1e-52 Score=370.24 Aligned_cols=168 Identities=41% Similarity=0.730 Sum_probs=162.1
Q ss_pred CchHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccH
Q psy2324 1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDP 80 (170)
Q Consensus 1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P 80 (170)
+||||++++|.+|||||||||||+|++++|++.|+++|++|++++| +.+|..|++.||+|+++||+|+|+|++++|+|
T Consensus 237 ~Ipdavl~A~~~hKdLgvhtem~~d~vl~l~~~~~~~~s~~~~~~g--~~s~~~~~k~f~~~~nnn~~i~~~~~~~~n~~ 314 (454)
T KOG2828|consen 237 NIPDAVLAALSNHKDLGVHTEMFQDGVLDLFEKGCLTNSKKTSHRG--VSSFKGGDKAFYNYLNNNPRIELRPQVFSNNP 314 (454)
T ss_pred cchHHHHHhccccccceehHHHhhcchHHHHHhccchhhhhhhccC--ccccchhhHHHHhhhcCCceeeeccccccCCH
Confidence 5899999999999999999999999999999999999999999999 88899999999999999999999999999999
Q ss_pred HHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-----CCCCCCCCC
Q psy2324 81 AIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-----SMPLLGSNP 155 (170)
Q Consensus 81 ~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-----~~~~l~s~~ 155 (170)
++++|+++|+||||++|+|||||+||+++|.|++||.|||+||+|||.++.+|.|++||+|||+++ ..|+|.-+.
T Consensus 315 ~ivrr~~~~~ains~ve~dl~~~~~s~~vg~r~lsG~GGqvDFlr~a~~g~dglgkpiialps~t~kGqskIVP~l~~gs 394 (454)
T KOG2828|consen 315 EIVRRNPKVTAINSPVEVDLTGQANSDSVGSRFLSGFGGQVDFLRNAKLGFDGLGKPIIALPSRTPKGQSKIVPTLKMGS 394 (454)
T ss_pred HHHhhcccceeeccceeeeccccccccchhhHHhhccCcchhhhhcCcccccccCCceeecCccCCCCceeecccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999886 389998888
Q ss_pred C------CCceEEeeeeeccC
Q psy2324 156 G------PPDYQASAWKIGLI 170 (170)
Q Consensus 156 ~------~~~~~~te~gia~~ 170 (170)
| ..||+|||+|||+.
T Consensus 395 gVvttrah~~y~VTEhGiA~L 415 (454)
T KOG2828|consen 395 GVVTTRAHLDYLVTEHGIADL 415 (454)
T ss_pred ceeeeccceeEEEecccHHHH
Confidence 7 67899999999973
No 3
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=100.00 E-value=2.5e-51 Score=373.29 Aligned_cols=158 Identities=32% Similarity=0.584 Sum_probs=147.7
Q ss_pred CchHHHHHhccc--CCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceec
Q psy2324 1 KIPEAILSNIKH--QINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSN 78 (170)
Q Consensus 1 ~ipnAV~~~L~~--~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN 78 (170)
+|||||+.+|++ ++||++||||+||++++|+++|++++++|+ +.+.+|++|++.||+|.++||+|.+||++|+|
T Consensus 268 ~i~naV~~gL~~~~~~~l~~~tEVlqDg~~~L~~~G~~~~as~t----s~~ls~~~~~r~~~~~~~~~~~i~lrP~~~sN 343 (501)
T COG0427 268 NIPNAVMGGLKESPFKDLGVHTEVLQDGLVDLIEEGKVTNASKT----SFVLSFAMGSRKLYDYLNYNPRIVLRPQDYSN 343 (501)
T ss_pred chHHHHHHHHhcCCcccceEEEEecChhHHHHHHcCCccccccc----eEEEcHhHhhhHHHHHhhcCcceeeccccccC
Confidence 589999999998 899999999999999999999999999998 78999999999999999999999999999999
Q ss_pred cHHHHHhcCCceEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------CCCC
Q psy2324 79 DPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------MPLL 151 (170)
Q Consensus 79 ~P~~Iar~~~~vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------~~~l 151 (170)
+|++|+|++ |+|||+++|+|||||||||++ |+||+||+|||+||+|||++| |+++|||+++ .|.+
T Consensus 344 ~PeiIrrlg-~iaiNsa~evDl~G~~NSt~v~g~r~~nGiGGs~DF~RnA~~S-------I~~~pSta~~G~IS~IVP~~ 415 (501)
T COG0427 344 NPEIIRRLG-VIAINSALEVDLYGAVNSTHVGGSRQMNGIGGSGDFVRNAYLS-------IFATPSTAKGGTISRIVPML 415 (501)
T ss_pred CHHHHHhcC-eeEeccceEEEeecccccccccCceeeecCCchHhhhhcceee-------eEecccccCCCceeEEEecC
Confidence 999999996 999999999999999999998 778999999999999999999 9999999553 4444
Q ss_pred C---CCCCCCceEEeeeeeccC
Q psy2324 152 G---SNPGPPDYQASAWKIGLI 170 (170)
Q Consensus 152 ~---s~~~~~~~~~te~gia~~ 170 (170)
+ +.-+++|||||||||||.
T Consensus 416 ~hVd~~rhdvdvvVTE~GiAdL 437 (501)
T COG0427 416 SHVDHTRHDVDVVVTEYGIADL 437 (501)
T ss_pred CCccccccceeEEEEeechhhh
Confidence 4 444699999999999984
No 4
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=100.00 E-value=1.1e-50 Score=323.82 Aligned_cols=114 Identities=35% Similarity=0.633 Sum_probs=97.2
Q ss_pred CchHHHHhcccCCceeeeccceeccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCC
Q psy2324 55 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 134 (170)
Q Consensus 55 Gs~~LY~~~d~np~v~~~p~~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~ 134 (170)
|+++||||+|+||.|+|+|++|||||.+|+|+++|+|||+||||||+||||||++|+|++||+|||.||+|||++|+|
T Consensus 1 Gs~~lY~~~d~np~i~~~p~~~~n~p~~ia~~~~~vsINsaievDL~Gqv~se~ig~~~~sG~GGq~DF~~gA~~s~g-- 78 (154)
T PF13336_consen 1 GSQRLYDWLDDNPSIEFRPVDYVNDPEVIARNDNMVSINSAIEVDLTGQVNSESIGGRQVSGIGGQLDFVRGAYLSKG-- 78 (154)
T ss_dssp S-HHHHHHHTTCTTEEE-BHHHHT-HHHHTTSTTEEEEEE-SEEETTS-EESSEETTEESSGGTTHHHHHHHHHHSTT--
T ss_pred CcHHHHHHHhcCCCeEEeCcceeCCHHHHhCcCCcEEEecceEEecCcceeecccCCceEecCccHHHHHHHHHhCCC--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeeeccCC------CCCCCCCC------CCCceEEeeeeeccC
Q psy2324 135 GLKYQILVHEDNS------MPLLGSNP------GPPDYQASAWKIGLI 170 (170)
Q Consensus 135 G~sIial~St~~~------~~~l~s~~------~~~~~~~te~gia~~ 170 (170)
||||||||||+++ .|.|+.+. +.+||||||||||++
T Consensus 79 G~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVTEyGvA~L 126 (154)
T PF13336_consen 79 GKSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVTEYGVADL 126 (154)
T ss_dssp -EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEETTEEEE-
T ss_pred CceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEcCCEEEEe
Confidence 9999999999974 45666443 389999999999974
No 5
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=100.00 E-value=7.6e-44 Score=326.74 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=140.2
Q ss_pred CchHHHHHhcccC-CCceEEecccch-------HHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeee
Q psy2324 1 KIPEAILSNIKHQ-INLGVHTELLTP-------GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMK 72 (170)
Q Consensus 1 ~ipnAV~~~L~~~-kdLgvhTEm~~D-------~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~ 72 (170)
.+||||...|.++ ||||+||||++| ++++|+|+|+|+|. ++++|++ +||||+|+||.|+|+
T Consensus 251 ~~p~AI~~~L~~~~kdLGlhtem~~~~~~np~p~li~lieaG~V~~~--------~v~gf~~---~mydyi~~nP~v~f~ 319 (543)
T TIGR01110 251 FNTAAIELLLPTYGESLGLKGKICKNWALNPHPTLIPAIESGWVESV--------HSFGGEL---GMEDYIEARPDVFFT 319 (543)
T ss_pred cCHHHHHHHhcccCcCCccCceeecCcccccCccHHHHHHcCCccce--------EeehhHh---HHHHHHhcCCCEEEe
Confidence 4799999999999 999999999999 99999999999987 5899999 999999999999999
Q ss_pred ccceeccHHHHHhcCCc----------eEeccceEeeecccccccCCCCeeeeccCchHHHH-----------------H
Q psy2324 73 RGTYSNDPAIIRQNHRM----------TAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFM-----------------R 125 (170)
Q Consensus 73 p~~~tN~P~~Iar~~~~----------vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~-----------------r 125 (170)
|++ .+|++|++| +|||+||||||+||+|+|++ +++||+|||+||+ |
T Consensus 320 ~~d-----~~i~~N~~~~q~ag~y~~dv~InstlqiDl~Gq~sset~--~~~SG~GGq~df~~~~~grrh~~~~w~~~~r 392 (543)
T TIGR01110 320 GPD-----GSMRSNRAFSQTAGQYAVDMFIGSTLQIDGYGNSSTATR--GRLAGFGGAPNMGHDPHGRRHATPAWLKMGA 392 (543)
T ss_pred cch-----hhhhhCcchhhhhcccccceeecceeEEecCCccchhhh--ceeccccCccccccCcccccccchhhhhhcc
Confidence 999 999999999 99999999999999999999 9999999999999 9
Q ss_pred HH---hhCCCCCCcEEEEeeeccCC------CCCCCC----------CCC------CCceEEeeeeecc
Q psy2324 126 GA---LTGLDGKGLKYQILVHEDNS------MPLLGS----------NPG------PPDYQASAWKIGL 169 (170)
Q Consensus 126 gA---~~S~gg~G~sIial~St~~~------~~~l~s----------~~~------~~~~~~te~gia~ 169 (170)
|| ++|+| ||+||||+||.++ .|.|.. ++. .++|||||||||.
T Consensus 393 gA~~~~~s~G--gK~iI~l~st~~~g~~s~iV~~L~~~~~~~~~~~~g~pVt~~r~Dv~~VVTE~GiA~ 459 (543)
T TIGR01110 393 EFTDGDLPRG--RKLVVQMVETYQEGMKPTFVETLDAWELAKKAGMPLAPVMIYGDDVTHIVTEEGIAY 459 (543)
T ss_pred cccccccCCC--CeEEEEeecccCCCCCceeecccchhhhhhhccCCCCceEeccCCcCEEeccHhHhH
Confidence 99 99999 9999999999885 466654 442 8999999999986
No 6
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=100.00 E-value=8.6e-42 Score=311.58 Aligned_cols=150 Identities=20% Similarity=0.207 Sum_probs=136.7
Q ss_pred CchHHHHHhcccC-CCceEEe----cccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccc
Q psy2324 1 KIPEAILSNIKHQ-INLGVHT----ELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 75 (170)
Q Consensus 1 ~ipnAV~~~L~~~-kdLgvhT----Em~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~ 75 (170)
++|+||+..|+++ ||||||| |||+|++++|+|+|++++.. + |++|++|++ +|+++||.+.+.|.+
T Consensus 261 gip~AV~~~L~~~mkdlGIht~f~~g~iTd~~vdL~e~G~vt~~~---d----V~~F~lGs~---~~i~~Np~~~~~~a~ 330 (492)
T TIGR01584 261 GAALAVTRFLKEKMIDHNIKASFGLGGITKQMVDLHEEGLIDKLF---D----VQSFDLGAA---ESIALNPNHQEIDAS 330 (492)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCccccHHHHHHHHCCCcccce---e----EEEeecchH---HHHhcCCCeEEeccc
Confidence 4899999999999 9999999 99999999999999999873 2 999999999 688999999999999
Q ss_pred eeccHHH---HHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC----
Q psy2324 76 YSNDPAI---IRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS---- 147 (170)
Q Consensus 76 ~tN~P~~---Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~---- 147 (170)
|+|||.. |+++++ +|||+|+||||+||||+|+ .+++++||+|||.||+|||++| ||++||+...
T Consensus 331 ~y~nP~~~~~i~~~~d-vsInsAlEVDl~gqVnv~t~s~G~~~sg~GGq~Dfa~GA~~S-------II~~ps~~Gris~I 402 (492)
T TIGR01584 331 WYANPANKGAMVNKLD-VVILSALEIDTKFNVNVMTGSDGVIRGASGGHQDTAAGAKLS-------IIVAPLVRGRIPTV 402 (492)
T ss_pred cccCCCchHHHhhCCC-eEEEeeEEEecCCeeeEeecCCCeEEecCchHHHHHhhhcce-------EEEEEcCCCCcCeE
Confidence 9999988 999999 9999999999999999999 8999999999999999999995 9999998422
Q ss_pred CCCCC--CCCC-CCceEEeeeeec
Q psy2324 148 MPLLG--SNPG-PPDYQASAWKIG 168 (170)
Q Consensus 148 ~~~l~--s~~~-~~~~~~te~gia 168 (170)
.|.|. +++| .+||||||||||
T Consensus 403 V~~v~~VtTpr~~Vd~VVTEyGIA 426 (492)
T TIGR01584 403 VEKVTTVITPGESIDVLVTEIGIA 426 (492)
T ss_pred eCCCCCEECChhhCCEEEccCEEe
Confidence 44443 3333 999999999999
No 7
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=99.92 E-value=2.6e-25 Score=184.09 Aligned_cols=132 Identities=18% Similarity=0.290 Sum_probs=115.9
Q ss_pred CchHHHHHhcccCCCceEEecccchHHH-------------HHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC
Q psy2324 1 KIPEAILSNIKHQINLGVHTELLTPGVI-------------KLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE 67 (170)
Q Consensus 1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~-------------~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np 67 (170)
+||++++..|++++||++||| +|++ +|+++|++ .|++++|+.+ ++.++
T Consensus 25 GiP~~va~~l~~~~~l~l~~E---~G~~g~~p~p~~~~~~~~l~~~g~~---~~~~~~g~~~-------------~~~~~ 85 (207)
T TIGR02428 25 GIPTLVANYLPEGIEVFLQSE---NGILGMGPAPEPGEEDPDLINAGKQ---PVTLLPGASY-------------FDSAD 85 (207)
T ss_pred cHHHHHHHHHhcCCeEEEEEe---CceecCccCCCCCCcCHHHHhCCCC---ceeeccCcEE-------------ecChh
Confidence 489999999999999999999 6887 79999999 7788888875 88888
Q ss_pred ceeeeccceeccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC
Q psy2324 68 LVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS 147 (170)
Q Consensus 68 ~v~~~p~~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~ 147 (170)
.+.+++..+++ ++||+++|||++||||++..++++++|+|||.||+++| +|+|++++||+++
T Consensus 86 ~f~~~~~G~~d-----------v~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d~~~~a-------~~~i~~~~~t~~~ 147 (207)
T TIGR02428 86 SFAMIRGGHVD-----------VAVLGALQVSENGDLANWMIPGKLVPGMGGAMDLVAGA-------KRVIVAMEHTTKD 147 (207)
T ss_pred heeeEcCCcee-----------EEEechHHhCCCCcccccccCCccccccCchhhhhcCC-------CEEEEEEeeECCC
Confidence 89999998887 99999999999999999999999999999999999997 7889999998873
Q ss_pred -----CCCCC---CCCCCCceEEeeeeecc
Q psy2324 148 -----MPLLG---SNPGPPDYQASAWKIGL 169 (170)
Q Consensus 148 -----~~~l~---s~~~~~~~~~te~gia~ 169 (170)
.|.+. +..+.+++|||||||++
T Consensus 148 g~~~iv~~~~~~~t~~~~v~~vVTe~gV~~ 177 (207)
T TIGR02428 148 GESKILKECTLPLTGAGCVDRIVTELAVFE 177 (207)
T ss_pred CceEEcccCCCccCCCCcccEEECCCEEEE
Confidence 33332 34456899999999975
No 8
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=98.53 E-value=7.5e-08 Score=88.09 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=90.2
Q ss_pred hHHHHHhcccC---CC--ceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC-ceeeeccce
Q psy2324 3 PEAILSNIKHQ---IN--LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTY 76 (170)
Q Consensus 3 pnAV~~~L~~~---kd--LgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np-~v~~~p~~~ 76 (170)
+=|+...|+++ |+ -+.--+=++-.|++|.|+|.+..- .-.-+|-....-. +.+|| .+++-...|
T Consensus 240 SLAv~~~l~~~M~~~~Ik~sFa~GGIT~~~v~mleeGL~~~l---------~DvQ~FDl~Av~S-~~~np~H~eisas~Y 309 (466)
T PF04223_consen 240 SLAVARFLREKMREKGIKGSFALGGITGYMVDMLEEGLFRKL---------LDVQCFDLDAVES-IRENPNHQEISASEY 309 (466)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEECEE-HHHHHHHHTTSECEE---------EECEESSHHHHHH-HHHTTTEEE--HHHH
T ss_pred HHHHHHHHHHHHHHcCcEEEEECCcccHHHHHHHHcccchhh---------eecccCCHHHHHH-HHhCCCcEEEcHHHh
Confidence 44677777643 32 233345578899999999998532 2233343333333 33454 455555555
Q ss_pred eccHH----HHHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCC
Q psy2324 77 SNDPA----IIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLL 151 (170)
Q Consensus 77 tN~P~----~Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l 151 (170)
-| |. ..-++| +.|-+|+|||+-=+||--+ -.+....|+||..|-+.||.++ ||..|.+....|.+
T Consensus 310 An-P~nkg~~vn~LD--~viLgAlEvD~dFNVNV~TgSdG~i~Ga~GGH~DtAagAklt-------Iiv~PL~rgRip~v 379 (466)
T PF04223_consen 310 AN-PHNKGAVVNQLD--VVILGALEVDTDFNVNVLTGSDGVIRGASGGHPDTAAGAKLT-------IIVAPLVRGRIPTV 379 (466)
T ss_dssp C--TTSS--GGGG-S--EEEE--SEEETT--EE-SB-TTS-B-CE-CTHHHHHHHSSEE-------EEE--SEETTEESE
T ss_pred cC-CCCCCccccccc--EEEEeeeeeccccceeEEECCCceEecCCCCCcchhhhcCeE-------EEEchhhcCCCCEE
Confidence 44 43 333332 7789999999999999887 5899999999999999999888 99999999988877
Q ss_pred C------CCCC-CCceEEeeeeecc
Q psy2324 152 G------SNPG-PPDYQASAWKIGL 169 (170)
Q Consensus 152 ~------s~~~-~~~~~~te~gia~ 169 (170)
. .++| -+|++|||||||-
T Consensus 380 ~d~V~tv~TPGetVDVlVTe~GIAV 404 (466)
T PF04223_consen 380 VDKVTTVTTPGETVDVLVTERGIAV 404 (466)
T ss_dssp ESS-SS-SB-GGG--EEEETTEEEE
T ss_pred eCceeEEcCCCCceeEEEecCceee
Confidence 6 4455 8999999999983
No 9
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=97.73 E-value=0.00015 Score=61.78 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=66.7
Q ss_pred HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-CCC-CCC------C
Q psy2324 82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-SMP-LLG------S 153 (170)
Q Consensus 82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-~~~-~l~------s 153 (170)
.|+--+-.++|-.++|||=+|++|...+|++++-|+||..|.+.||. |.||.|.-+.+ +.| .++ .
T Consensus 94 ~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gak-------kvii~m~H~~k~g~~ki~~~ctlplt 166 (225)
T COG2057 94 MIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAK-------KVIVVMEHTKKSGVGKILKECTLPLT 166 (225)
T ss_pred HHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCc-------EEEEEeeeecccCCCcccCccccccc
Confidence 56666677999999999999999999999999999999999998874 45999988888 444 222 3
Q ss_pred CCCCCceEEeeeeec
Q psy2324 154 NPGPPDYQASAWKIG 168 (170)
Q Consensus 154 ~~~~~~~~~te~gia 168 (170)
..+.+|-||||-||=
T Consensus 167 ~~~~v~~iiTdl~V~ 181 (225)
T COG2057 167 GNGCVDRVITDLAVF 181 (225)
T ss_pred CCCCceEEEeccEEE
Confidence 445899999999874
No 10
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=97.39 E-value=0.00017 Score=65.88 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=97.3
Q ss_pred HHHHHhcccC---CCce--EEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC-ceeeecccee
Q psy2324 4 EAILSNIKHQ---INLG--VHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTYS 77 (170)
Q Consensus 4 nAV~~~L~~~---kdLg--vhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np-~v~~~p~~~t 77 (170)
-||...|+++ +|.. .--+=++-.|++|.|.|.++.--- +-+|-..+. .-+.+|| .++.-.-.|.
T Consensus 286 LaVtrfl~ekM~~~nI~AsfaLGGIT~~mVdLhE~gLi~kllD-------vQsFD~~aa---~Sla~np~h~EIsAn~YA 355 (513)
T COG3051 286 LAVTRFLEEKMRRRNIKASFALGGITATMVDLHEEGLIDKLLD-------VQSFDSDAA---QSLARNPNHIEISANQYA 355 (513)
T ss_pred HHHHHHHHHHHHhhccceeeecccchHHHHHHHHHHHHHHHhc-------ccccCcHHH---HHHhcCCccEEechhhhc
Confidence 3666777653 2221 112346778889999888863211 223333322 1244454 3455555555
Q ss_pred ccHHHHHhcCCc-eEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCCCCCC
Q psy2324 78 NDPAIIRQNHRM-TAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNP 155 (170)
Q Consensus 78 N~P~~Iar~~~~-vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l~s~~ 155 (170)
|-..-=+..+++ +.|-||||||--=+||--+ ..+-.-..+||..|-+.+|.+| ||.-|=...-.|.+..+-
T Consensus 356 np~skGa~vdrLdvviLSALEiDt~FNVNVmTgSdGvirgAsGGHcDTA~~A~ls-------iI~aPLvRgRIptvVd~V 428 (513)
T COG3051 356 NPGSKGASVDRLDVVILSALEIDTQFNVNVMTGSDGVIRGASGGHCDTAAAAALS-------IIVAPLVRGRIPTVVDNV 428 (513)
T ss_pred CCCCCCceeceeeEEEEEeeeeccccceEEEecCCceeecccCCccchhhhhcee-------EEeehhhcCccceeeccc
Confidence 543333334444 7789999999988888655 3566667899999999999988 888777777788887554
Q ss_pred ------C-CCceEEeeeeecc
Q psy2324 156 ------G-PPDYQASAWKIGL 169 (170)
Q Consensus 156 ------~-~~~~~~te~gia~ 169 (170)
| -+|+.|||+|||-
T Consensus 429 ~tviTPG~svDvlvTd~GIav 449 (513)
T COG3051 429 TTVITPGSSVDVLVTDHGIAV 449 (513)
T ss_pred eeEecCCCceeEEEeccceee
Confidence 3 7899999999983
No 11
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=59.92 E-value=5.3 Score=25.98 Aligned_cols=18 Identities=22% Similarity=0.822 Sum_probs=15.5
Q ss_pred chHHHHhcccCCceeeec
Q psy2324 56 DKPLYDFVHNNELVQMKR 73 (170)
Q Consensus 56 s~~LY~~~d~np~v~~~p 73 (170)
++++|+|+.+|+.++++-
T Consensus 22 ~kk~y~YL~~ne~F~v~k 39 (43)
T PF14553_consen 22 SKKIYNYLNDNEFFEVRK 39 (43)
T ss_dssp -HHHHHHHHHSTTEEEEE
T ss_pred hHHHHHHHhcCCcEEEEe
Confidence 899999999999998864
No 12
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=53.32 E-value=87 Score=30.29 Aligned_cols=141 Identities=9% Similarity=0.110 Sum_probs=81.6
Q ss_pred chHHHHHhccc-----CCCceEEec-ccchHHHHHHHcCCccccccccCCCceEEEeecC-chHHHHhcccCCceeeecc
Q psy2324 2 IPEAILSNIKH-----QINLGVHTE-LLTPGVIKLFNSGVINNSKKSIDRGQITATLLLG-DKPLYDFVHNNELVQMKRG 74 (170)
Q Consensus 2 ipnAV~~~L~~-----~kdLgvhTE-m~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~G-s~~LY~~~d~np~v~~~p~ 74 (170)
.|+++...|.+ .+||.+--- +----.++|+++|++. |..++|+-| +.+|-+.+++. .+++-|+
T Consensus 53 ~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~G~a~---------kl~fs~~g~~~~R~~~av~~G-~id~iPi 122 (543)
T TIGR01110 53 QADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEKGIAR---------KLDFSFAGPQSLRIAQLLEDG-KLEIGAI 122 (543)
T ss_pred chHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhcCcee---------eEEEeecCcchHHHHHHHHcC-CeeEeeh
Confidence 57788886642 388876544 4455678999999984 456777665 45555655555 6889998
Q ss_pred ce--eccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCCC
Q psy2324 75 TY--SNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLG 152 (170)
Q Consensus 75 ~~--tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l~ 152 (170)
.+ ..-|..+..++-=|++=.+=..|=.|++. . |.. .--...+++.|..+ + |+.|+=.---....|.+.
T Consensus 123 h~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s-l--G~s----~~~~~aaaeAAk~~-a--giVIVEVNeIVd~~PrV~ 192 (543)
T TIGR01110 123 HTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY-T--GPN----TEDTPAIVEATAFR-D--GIVIAQVNELVDKLPRVD 192 (543)
T ss_pred hchHhhhhhhhhccCCcEEEEECCcCCCCCeEE-e--cCc----ccchHHHHHhhhhc-C--CEEEEEECccCCCCCcEE
Confidence 88 77776655443335665666667777772 2 210 11223455555544 4 555553322122344442
Q ss_pred CCCCCCceEE
Q psy2324 153 SNPGPPDYQA 162 (170)
Q Consensus 153 s~~~~~~~~~ 162 (170)
=.+-.+|+||
T Consensus 193 IP~s~VD~VV 202 (543)
T TIGR01110 193 IPASWVDFVI 202 (543)
T ss_pred cChhheEEEE
Confidence 2222667766
No 13
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=53.28 E-value=2.8 Score=39.81 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=36.0
Q ss_pred eEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhh
Q psy2324 90 TAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALT 129 (170)
Q Consensus 90 vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~ 129 (170)
+|+-+-+|||=+|+||...++.+...|.||-.|..++|..
T Consensus 365 ~a~LgfaqvD~~GNVNvS~f~~~~~aG~GGFi~It~~a~~ 404 (527)
T COG4670 365 AAYLGFAQVDRHGNVNVSKFGGSVIAGCGGFIDITQGAKK 404 (527)
T ss_pred hhhhhhhhccCCCcccHhhcCCccccCCCCceehhcCcce
Confidence 5666788999999999999999999999999999988865
No 14
>KOG3822|consensus
Probab=51.41 E-value=15 Score=34.20 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=59.3
Q ss_pred eEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC-------CCCCC-CCCCCCceE
Q psy2324 90 TAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS-------MPLLG-SNPGPPDYQ 161 (170)
Q Consensus 90 vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~-------~~~l~-s~~~~~~~~ 161 (170)
+.|-.|+||.-||..+-=++.++.+-|+||..|.+. |++ -|-|+.|.-.+++ .-+|+ ++-+..|-+
T Consensus 392 lT~LGAmqvS~~GDLANWMIPGKlVKGMGGAMDLVs----s~~--trVvvtMeH~ak~~~pKIme~C~lPLTGK~~v~rI 465 (516)
T KOG3822|consen 392 LTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVS----SPK--TRVVVTMEHCAKDNTPKIMEKCTLPLTGKGCVDRI 465 (516)
T ss_pred eEeeeeeehhhccchhhhcccchhhccccccchhhh----CCC--ceEEEEEeecccCCCchhhhhccccccCcchHhhh
Confidence 678899999999999999999999999999999985 667 8899999887775 22344 566788888
Q ss_pred Eeeeee
Q psy2324 162 ASAWKI 167 (170)
Q Consensus 162 ~te~gi 167 (170)
+||.-|
T Consensus 466 ItekAV 471 (516)
T KOG3822|consen 466 ITEKAV 471 (516)
T ss_pred hhhhee
Confidence 888655
No 15
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=47.15 E-value=13 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=22.6
Q ss_pred CceE-EEeecCchHHHHhcccCCceeeecc
Q psy2324 46 GQIT-ATLLLGDKPLYDFVHNNELVQMKRG 74 (170)
Q Consensus 46 g~~v-~~fa~Gs~~LY~~~d~np~v~~~p~ 74 (170)
|+.+ +..+-=.++|.+|++.||..+..|-
T Consensus 14 G~~l~g~~aP~~~~l~~WL~~~p~yev~p~ 43 (45)
T smart00592 14 GKKLTGDDAPKAKDLERWLEENPEYEVAPR 43 (45)
T ss_pred ccEeccccCCcHHHHHHHHhcCCCcccCCC
Confidence 5554 3456679999999999999887764
No 16
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=47.09 E-value=39 Score=29.01 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=47.9
Q ss_pred CchHHHHHhcccC--CCceEEeccc--ch-HHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccC-Cceeeecc
Q psy2324 1 KIPEAILSNIKHQ--INLGVHTELL--TP-GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN-ELVQMKRG 74 (170)
Q Consensus 1 ~ipnAV~~~L~~~--kdLgvhTEm~--~D-~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~n-p~v~~~p~ 74 (170)
++|.|+..+|.++ |||.+.+-=- -| ++-.|+..|.+. |.++|+.-.++++-+.+..- -.+++.|+
T Consensus 30 g~P~alI~ali~~GvkdLt~I~n~~g~~d~glg~li~~~~vk---------k~i~S~ig~n~~~~r~~~~geleve~~pq 100 (220)
T COG1788 30 GIPEALIHALIRQGVKDLTVISNNAGFPDLGLGKLIGNGQVK---------KMIASYIGSNPEFGRQMLAGELEVELVPQ 100 (220)
T ss_pred CChHHHHHHHHHcCCcceEEEecCCCCCcccHHHHhhcCcEE---------EEEEeccCCCHHHHHHhhcceEEEEECCc
Confidence 4799999999654 9999998773 46 799999998884 45777777776666666553 34556665
Q ss_pred c
Q psy2324 75 T 75 (170)
Q Consensus 75 ~ 75 (170)
.
T Consensus 101 g 101 (220)
T COG1788 101 G 101 (220)
T ss_pred h
Confidence 4
No 17
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=41.30 E-value=9.8 Score=24.80 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=19.4
Q ss_pred CceEEE-eecCchHHHHhcccCCceeeec
Q psy2324 46 GQITAT-LLLGDKPLYDFVHNNELVQMKR 73 (170)
Q Consensus 46 g~~v~~-fa~Gs~~LY~~~d~np~v~~~p 73 (170)
|+..++ .|=-.++|.+|++.||.++..|
T Consensus 16 Gk~l~G~~AP~~~~L~~WL~~~P~y~V~P 44 (46)
T PF07533_consen 16 GKRLTGDEAPKLKELEEWLEEHPGYEVAP 44 (46)
T ss_dssp TEEE-CCCS-BCCCHHHHHHH-TTEEESH
T ss_pred CCCcccccCcCHHHHHHHHHHCcCceeCC
Confidence 555433 5556899999999999988765
No 18
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=38.59 E-value=29 Score=26.58 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=41.9
Q ss_pred hHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhccc-CCceeee-ccceeccH
Q psy2324 3 PEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHN-NELVQMK-RGTYSNDP 80 (170)
Q Consensus 3 pnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~-np~v~~~-p~~~tN~P 80 (170)
++.+...|+....-+.+---+..|.+-|.++|.+++++ +++ ...+.+++.+ -|.+.+. ...++.|-
T Consensus 79 ~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~--------~tt----~~~~~~~l~~~~p~~~~~~~~~~v~dg 146 (166)
T PF13278_consen 79 DPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRR--------ATT----HWSLAEALRERFPNVNVVSDQLFVDDG 146 (166)
T ss_dssp -HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSE--------E-------GGGHHHHHHCTTCEEE-TSSSEEEET
T ss_pred CHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCccc--------ccc----hHHHHHHHHHhCCCccccCCCEEEECC
Confidence 35566777654444466667889999999999999875 333 4556666665 5777666 55566554
No 19
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=38.17 E-value=64 Score=30.43 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=72.5
Q ss_pred chHHHHHhcccC----------CCceEEecccc-h-HHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCce
Q psy2324 2 IPEAILSNIKHQ----------INLGVHTELLT-P-GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELV 69 (170)
Q Consensus 2 ipnAV~~~L~~~----------kdLgvhTEm~~-D-~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v 69 (170)
.|.+++.+|.++ ++|.+.+.+-. + ....+..+|.++. ..+ ..++..+-+.+.++ .+
T Consensus 28 ~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~----------~is-~~~sp~~Rkai~~G-~i 95 (485)
T TIGR03458 28 YPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIAR----------RLP-YQSDPTLRKKINAG-EV 95 (485)
T ss_pred CHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEE----------Eec-ccCCHHHHHHHHcC-CC
Confidence 588888888532 37777774443 1 1122344444431 112 23455666666666 57
Q ss_pred eeeccceeccHHHHHhcC--C-ceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC
Q psy2324 70 QMKRGTYSNDPAIIRQNH--R-MTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN 146 (170)
Q Consensus 70 ~~~p~~~tN~P~~Iar~~--~-~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~ 146 (170)
.+.|..+..-|+.+++.. + =|+|=.+=..|-.|.++ +|++.|+.+.+... .+-+|+- ..+
T Consensus 96 ~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~s-----------lg~s~~~~~~aa~a----Ak~VIvE--VN~ 158 (485)
T TIGR03458 96 MYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRII-----------PTSSVGNNPTFLEL----ADKVIVE--VNT 158 (485)
T ss_pred EEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEE-----------EecccchHHHHHHh----CCEEEEE--ECC
Confidence 899999999999997542 1 25665666667777654 35788888888776 4446654 344
Q ss_pred CCC
Q psy2324 147 SMP 149 (170)
Q Consensus 147 ~~~ 149 (170)
.+|
T Consensus 159 ~mP 161 (485)
T TIGR03458 159 WQP 161 (485)
T ss_pred CCC
Confidence 455
No 20
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=37.57 E-value=20 Score=31.03 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=22.8
Q ss_pred cCCCceEEecccchHHHHHHHcCCccccc
Q psy2324 12 HQINLGVHTELLTPGVIKLFNSGVINNSK 40 (170)
Q Consensus 12 ~~kdLgvhTEm~~D~~~~L~~~G~vt~~~ 40 (170)
+-.|+|++ +=+..|++++++.|+|+..+
T Consensus 7 nADDfG~s-~~vn~gI~~~~~~G~v~sts 34 (283)
T TIGR03473 7 TADDFGLS-LEVNEAVEKAHRDGILTAAS 34 (283)
T ss_pred ecccCCCC-HHHHHHHHHHHHcCceeeee
Confidence 34677765 77899999999999998754
No 21
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=35.89 E-value=33 Score=30.59 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=49.0
Q ss_pred EEecccchHHHHHHHcCCccccccccCCCceEEEee----------------cC----chHHHHhcccCCceeeecccee
Q psy2324 18 VHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLL----------------LG----DKPLYDFVHNNELVQMKRGTYS 77 (170)
Q Consensus 18 vhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa----------------~G----s~~LY~~~d~np~v~~~p~~~t 77 (170)
+||+|++||.++..+.-.|+---++-..|-.+++=. .| ++=.|.|+-+.|. .+.|+==|
T Consensus 185 ~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa-~~~PiiGt 263 (298)
T COG4989 185 LHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPA-KPQPIIGT 263 (298)
T ss_pred ccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcC-cccceecC
Confidence 599999999999999888876555443333222200 12 3456889988887 68899999
Q ss_pred ccHHHHHhc
Q psy2324 78 NDPAIIRQN 86 (170)
Q Consensus 78 N~P~~Iar~ 86 (170)
.+|+.|+..
T Consensus 264 ~~~eRi~~a 272 (298)
T COG4989 264 GNLERIRAA 272 (298)
T ss_pred CCHHHHHHH
Confidence 999998875
No 22
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=32.27 E-value=86 Score=26.46 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=35.8
Q ss_pred CchHHHHHhcc--cCCCceEEec-cc--chHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccC
Q psy2324 1 KIPEAILSNIK--HQINLGVHTE-LL--TPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN 66 (170)
Q Consensus 1 ~ipnAV~~~L~--~~kdLgvhTE-m~--~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~n 66 (170)
..|.|++.+|. +.|||.+.+. .= .-++=.|+.+|.|.. .++++.--.+++-+-+.+|
T Consensus 30 ~~P~ali~al~r~~~~dLtli~~~~g~~~~g~~~L~~~G~Vkr---------~i~s~~g~~p~~~~~~~~g 91 (219)
T PRK09920 30 GTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVKK---------VIASHIGTNPETGRRMISG 91 (219)
T ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCCcchhhHhhCCCEeE---------EEeccccCCHHHHHHHHcC
Confidence 36999999985 3499999872 21 224777899999953 3566532234444444444
No 23
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=27.74 E-value=31 Score=28.99 Aligned_cols=44 Identities=16% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCceEEecccchHHHHHHHcCCccccccccCCCceEEEeec--CchHHHHhcccCCc
Q psy2324 14 INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL--GDKPLYDFVHNNEL 68 (170)
Q Consensus 14 kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~--Gs~~LY~~~d~np~ 68 (170)
.|+|+ |+=.+.|++++++.|+|+..+ .++- ..++-.+++.++|.
T Consensus 8 DDfG~-s~~vn~gI~~~~~~G~vtsts----------lM~n~p~~~~a~~~~k~~~~ 53 (261)
T PF04794_consen 8 DDFGL-SPGVNRGIIEAFENGIVTSTS----------LMVNMPAFEEAAALAKNNPG 53 (261)
T ss_dssp EEETS-SHHHHHHHHHHHHCCT-SEEE----------EETTSTTHHHHHHHHHH-TT
T ss_pred CCCCC-CHHHHHHHHHHHHcCCceEee----------eccCChhHHHHHHHHHhCCC
Confidence 35554 467799999999999998643 2322 25555666666653
No 24
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.49 E-value=30 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=26.1
Q ss_pred EEEeec---CchHHHHhccc-------CCceeeeccceeccHH
Q psy2324 49 TATLLL---GDKPLYDFVHN-------NELVQMKRGTYSNDPA 81 (170)
Q Consensus 49 v~~fa~---Gs~~LY~~~d~-------np~v~~~p~~~tN~P~ 81 (170)
+++.|. .+++-|+|+.- |..|.++-+|++|.|.
T Consensus 15 iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~ 57 (106)
T COG4837 15 ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPL 57 (106)
T ss_pred hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCcc
Confidence 344455 48999999975 6778999999999885
No 25
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=25.82 E-value=73 Score=25.77 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=52.8
Q ss_pred CchHHHHHhccc--CCCceEEecccch-HHHHHHHcCCccccccccCCCceEEEeecC---chHHHHhcccCCceeeecc
Q psy2324 1 KIPEAILSNIKH--QINLGVHTELLTP-GVIKLFNSGVINNSKKSIDRGQITATLLLG---DKPLYDFVHNNELVQMKRG 74 (170)
Q Consensus 1 ~ipnAV~~~L~~--~kdLgvhTEm~~D-~~~~L~~~G~vt~~~k~~~~g~~v~~fa~G---s~~LY~~~d~np~v~~~p~ 74 (170)
++|.|++..|.. +++|-+.+..-.. ++-.|...|.+... ..+| .| +..+-+-+.++ .++++-.
T Consensus 27 ~~P~al~~~l~r~~~~~l~~~~~~~g~~~~~~l~~~g~v~~~---------~~~~-~~~~~~~~~~~~~~~g-~~~~~~~ 95 (217)
T PF01144_consen 27 GIPMALVRELARQGHRDLTLVISEAGILGLDPLIAAGCVKRV---------EISF-GGEEASPRFRRAVEDG-EIEFEEW 95 (217)
T ss_dssp THHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEE---------EESC-TTBBCEHHHHHHHHTT-SSEEEEH
T ss_pred CcHHHHHHHHHhcCCCCcEEEEeCCccccccccccCCCcceE---------EEec-cccccchhhhhhccCC-ceehhhh
Confidence 368888888854 5888877666554 66678888888543 4444 33 33443333333 3344311
Q ss_pred ceeccHHHHHhcCCceEeccceEeeecccccccCCC
Q psy2324 75 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLG 110 (170)
Q Consensus 75 ~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG 110 (170)
.--. .+.++ .=.+.++|.+|..|...+|
T Consensus 96 ~~~~---~~~~~-----~aga~gip~~g~~~~~g~g 123 (217)
T PF01144_consen 96 SQGG---IIDRL-----RAGAAGIPFYGNLNPTGIG 123 (217)
T ss_dssp HHHH---HHHHH-----HHHHSTEETTEEEESTTTT
T ss_pred hcch---HHHHH-----HHhhccCCCCceeeeeecC
Confidence 1111 11111 2257789999999988776
No 26
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=25.60 E-value=51 Score=26.72 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=25.7
Q ss_pred HHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccHHHHHhcCCceE
Q psy2324 29 KLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTA 91 (170)
Q Consensus 29 ~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P~~Iar~~~~vs 91 (170)
.|++.|.++.. .+.-+.+-+|+++||. + -.+++.+|+.+|.
T Consensus 116 ~Li~~G~i~~~-------------~~Smq~Ir~wl~~~P~-~--------~~~ll~~N~syVF 156 (158)
T PF03562_consen 116 LLIDRGEIPRE-------------QMSMQAIRAWLRAHPE-E--------ADELLNQNPSYVF 156 (158)
T ss_dssp HHHHTTSS-TT-------------S-SHHHHHHHHHHTGG-G--------HHHHHTTS---EE
T ss_pred HHHHcCCcChh-------------hCCHHHHHHHHHHCHH-H--------HHHHHHhCCCceE
Confidence 47788887644 4567889999999986 2 2456777776654
No 27
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of LysR-type regulator CbnR which is involved in the regulation of chlorocatechol breakdown. The chlorocatechol-degradative pathway is often found in bacteria that can use chlorinated aromatic compounds as carbon and energy sources. CbnR is found in the 3-chlorobenzoate degradative bacterium Ralstonia eutropha NH9 and forms a tetramer. CbnR activates the expression of the cbnABCD genes, which are responsible for the degradation of chlorocatechol converted from 3-chlorobenzoate and are transcribed divergently from cbnR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccha
Probab=25.13 E-value=96 Score=23.09 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=28.9
Q ss_pred chHHHHHhcccCCCceEE-ecccchHHHHHHHcCCccc
Q psy2324 2 IPEAILSNIKHQINLGVH-TELLTPGVIKLFNSGVINN 38 (170)
Q Consensus 2 ipnAV~~~L~~~kdLgvh-TEm~~D~~~~L~~~G~vt~ 38 (170)
+|.++.+..+.++++.+. .+.-++.+++..+.|.++-
T Consensus 16 l~~~l~~f~~~~P~v~i~i~~~~~~~l~~~l~~g~~D~ 53 (198)
T cd08486 16 LPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHV 53 (198)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHcCCceE
Confidence 466666666778988876 4567889999999998875
No 28
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=24.08 E-value=70 Score=30.53 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=79.7
Q ss_pred hHHHHHhccc--CCCceEEeccc---chHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcc----cCCceeeec
Q psy2324 3 PEAILSNIKH--QINLGVHTELL---TPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVH----NNELVQMKR 73 (170)
Q Consensus 3 pnAV~~~L~~--~kdLgvhTEm~---~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d----~np~v~~~p 73 (170)
-|-|++.+.+ .|||.+-.--+ .|.+++.+|+|+||+-.-+-.||+. =+.+- ++|- .+|.
T Consensus 59 ~n~v~~~~~~~g~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~~-----------~~~is~g~l~~p~-~~~s 126 (492)
T TIGR01584 59 VNMVMRIIADMGFKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGTL-----------GDEISKGILKKPV-IIRS 126 (492)
T ss_pred HHHHHHHHHHcCcCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCchH-----------HHHHhcCCCCCCe-EEec
Confidence 3667777754 59999987654 5789999999999986544444442 22222 2453 2442
Q ss_pred cceeccHHHHHh--cCCceEeccceEeeecccccccCCCCeeeec--cCchHHHHHHHhhCCCCCCcEEEEeeeccCCCC
Q psy2324 74 GTYSNDPAIIRQ--NHRMTAINTCLEIDITGQVVSDSLGTRIYSG--FGGQVDFMRGALTGLDGKGLKYQILVHEDNSMP 149 (170)
Q Consensus 74 ~~~tN~P~~Iar--~~~~vsINsaleVDL~GQvnse~iG~r~~sG--~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~ 149 (170)
.=..+..|.. ++-=+|+=.+=..|=+|+++- +.| .||+.+|..-+... .+-+|+. +.+..|
T Consensus 127 --hggr~r~i~~g~l~iDVAfI~Vsp~D~~Gn~sg-------~~G~s~~gslgya~~dA~~----A~kVIae--vn~~vP 191 (492)
T TIGR01584 127 --HGGRARAIETGELHIDVAFLGVPCCDEMGNANG-------MTGKSPCGSLGYAIVDAQY----ADKVVAI--TDSLVP 191 (492)
T ss_pred --CCcHHHHHhcCCCCCCEEEEeCCCcccCCCCcc-------cCCCcccCccchhHHHHHh----CCEEEEE--ECCCCC
Confidence 1234556632 211255555556677777652 223 67788888776655 3447766 555555
Q ss_pred CC--CCCCC--CCceEEe
Q psy2324 150 LL--GSNPG--PPDYQAS 163 (170)
Q Consensus 150 ~l--~s~~~--~~~~~~t 163 (170)
.. ..-++ .+||||-
T Consensus 192 ~p~g~~~Ih~s~VD~VVE 209 (492)
T TIGR01584 192 YPNTPASIKQTQVDYVVK 209 (492)
T ss_pred CCCCCCccChhheEEEEE
Confidence 32 23333 7788775
No 29
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=20.31 E-value=1.9e+02 Score=23.21 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=38.3
Q ss_pred ccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCCCCCCC--CCceEEeeeee
Q psy2324 106 SDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNPG--PPDYQASAWKI 167 (170)
Q Consensus 106 se~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l~s~~~--~~~~~~te~gi 167 (170)
-+.-|.|.==| ||-.|-.-... +.. +.-.|++.-...-.+.++...+ ..|+++||-||
T Consensus 120 FD~~G~RLG~G-gGyYDR~L~~~-~~~--~~~~igla~~~Q~~~~ip~e~hD~~ld~iiTe~~~ 179 (182)
T PRK10333 120 FDEYGQRLGMG-GGFYDRTLQNW-QHY--KTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKV 179 (182)
T ss_pred ECCCCCcccCC-cchHHHHHHHh-ccc--CCcEEEEeeeeEEeCCcCCCcccCcCCEEEeCCeE
Confidence 33334454444 88999776643 322 2235777666666777777776 88999999886
No 30
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=25 Score=27.48 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=17.1
Q ss_pred EEeecCchHHHHhcccCCce
Q psy2324 50 ATLLLGDKPLYDFVHNNELV 69 (170)
Q Consensus 50 ~~fa~Gs~~LY~~~d~np~v 69 (170)
++|+-+|+++|+|+.++|.+
T Consensus 37 ~cFaRsSpRf~~WLl~~~~f 56 (119)
T COG2832 37 ACFARSSPRFHAWLLRHKYF 56 (119)
T ss_pred HHHHcCCcHHHHHHHcCchh
Confidence 46777999999999998864
Done!