RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2324
(170 letters)
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD;
1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Length = 448
Score = 169 bits (430), Expect = 2e-51
Identities = 67/134 (50%), Positives = 100/134 (74%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A+LS +K + +LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++ T L+G K LYD
Sbjct: 219 IPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYD 278
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
F NN V++K Y N P+++ Q +M IN CL++D GQ+VSDS+GT+ +SG GGQV
Sbjct: 279 FAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQV 338
Query: 122 DFMRGALTGLDGKG 135
DF+RGA +DGKG
Sbjct: 339 DFVRGASMSIDGKG 352
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.05A {Porphyromonas gingivalis}
Length = 434
Score = 166 bits (422), Expect = 2e-50
Identities = 60/135 (44%), Positives = 93/135 (68%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A L +K + +LG+HTE+ + GV++L SGVI KK++ G++ AT L+G + +Y
Sbjct: 223 IPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYH 282
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
F+ N V++ Y NDP +I QN M +IN+C+EID+ GQVVS+ +G++ +SG GGQV
Sbjct: 283 FIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQV 342
Query: 122 DFMRGALTGLDGKGL 136
D++RGA +GK +
Sbjct: 343 DYVRGAAWSKNGKSI 357
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.80A
{Porphyromonas gingivalis}
Length = 439
Score = 165 bits (419), Expect = 5e-50
Identities = 57/133 (42%), Positives = 89/133 (66%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A+L ++ +LG+HTE+ T GV+++ G+IN KK++ ++ +L+ G K LYD
Sbjct: 220 IPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYD 279
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
FV+NN +++ Y N+P +I +N RM +IN+CLE+D+ GQ S+S+G +SG GGQV
Sbjct: 280 FVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQV 339
Query: 122 DFMRGALTGLDGK 134
DF+RGA G
Sbjct: 340 DFLRGAKRSKGGI 352
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 164 bits (418), Expect = 9e-50
Identities = 48/133 (36%), Positives = 82/133 (61%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
+P + +K + +LG+HTE+L PG++ L GV+ N +K++DRG+ T +G + +Y+
Sbjct: 245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYE 304
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
+++++ + + Y NDP II QN + +IN L+ID+TG S+ + YS GGQ+
Sbjct: 305 YLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQL 364
Query: 122 DFMRGALTGLDGK 134
DF+RGA G+
Sbjct: 365 DFVRGAYASKGGR 377
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: COA; 2.40A {Shewanella oneidensis}
Length = 436
Score = 162 bits (412), Expect = 6e-49
Identities = 62/135 (45%), Positives = 90/135 (66%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
IP+A+LS + +LGVHTEL + G+++L GVINN+KK G++ LG + LYD
Sbjct: 214 IPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYD 273
Query: 62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
+V +N V ND +IIR+N + AIN+ L++D+TGQV +DS+GT+IYSG GGQ+
Sbjct: 274 YVDDNPAVIFMDIEQVNDTSIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQM 333
Query: 122 DFMRGALTGLDGKGL 136
DF+RGA G+ +
Sbjct: 334 DFIRGAGLSEGGRSV 348
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein STRU
initiative; 2.70A {Porphyromonas gingivalis}
Length = 506
Score = 134 bits (339), Expect = 6e-38
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 2 IPEAI---LSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKP 58
+ A+ L + ++TE++ VI L G I G + +
Sbjct: 262 VANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKF-----ASGCSLSVSRSVIQD 316
Query: 59 LYDFV-HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSG 116
+Y + + + ++ YSN+P I+R + INT LE DI G + S + GTR+ +G
Sbjct: 317 IYANLDFFKDKILLRPQEYSNNPEIVR-RLGVITINTALEADIFGNINSTHVSGTRMMNG 375
Query: 117 FGGQVDFMRGA 127
GG DF R +
Sbjct: 376 IGGSGDFTRNS 386
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
c.124.1.2 c.124.1.2
Length = 497
Score = 129 bits (325), Expect = 6e-36
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 2 IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
I A++ + NL +++E+L L ++G + G + +
Sbjct: 267 IANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRF-----ASGSSITLSPRRNADV 321
Query: 60 YDFV-HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGF 117
+ + + + ++ SN P ++R + INT LE DI G V S + GT++ +G
Sbjct: 322 FGNLERYKDKLVLRPQEISNHPEVVR-RLGIIGINTALEFDIYGNVNSTHVGGTKMMNGI 380
Query: 118 GGQVDFMRGA 127
GG DF R A
Sbjct: 381 GGSGDFARNA 390
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest
center for structural genomics, MCSG, structural
genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2
c.124.1.2
Length = 509
Score = 109 bits (273), Expect = 1e-28
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 16/133 (12%)
Query: 2 IPEAILSNIKHQINLGVHTELLTPGVI-----KLFNSGVINNSKKSIDRGQITATLLLGD 56
A+ ++ ++ T G I L G+I +
Sbjct: 280 ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQS---------FDG 330
Query: 57 KPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRM-TAINTCLEIDITGQVVSDSLG-TRIY 114
N +++ Y+N + R+ + + LEID+ V + +
Sbjct: 331 DAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLR 390
Query: 115 SGFGGQVDFMRGA 127
GG D GA
Sbjct: 391 GASGGHSDTAAGA 403
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein.,
structural genomics, PSI-2, protein STR initiative; HET:
CIT; 2.70A {Streptococcus mutans}
Length = 519
Score = 80.8 bits (199), Expect = 1e-18
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 15/133 (11%)
Query: 2 IPEAILSNIK-HQINLGVHTEL----LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD 56
A+ ++ I + +T +++L G+++ D +A L
Sbjct: 283 ASLAVTRFMREQMIKDDIKANFALGGITNAMVELLEEGLVDKILDVQDFDHPSAVSL--- 339
Query: 57 KPLYDFVHNNELVQMKRGTYSNDPAIIRQ-NHRMTAINTCLEIDITGQVVSDSLG-TRIY 114
+ + ++ Y++ + N + + LE+D V + I
Sbjct: 340 -----DRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIR 394
Query: 115 SGFGGQVDFMRGA 127
GG D A
Sbjct: 395 GASGGHCDTAFAA 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.002
Identities = 24/163 (14%), Positives = 42/163 (25%), Gaps = 65/163 (39%)
Query: 61 DFVHNNE-------LVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL---- 109
++ N+ L+Q T +I+ I + S+S
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIK-----NYITARIMAKRPFDKKSNSALFRA 148
Query: 110 ----GTRIYSGFGGQ------------------------VDFMRGALTGLD--------- 132
++ + FGGQ + F L+ L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 133 -GKGLKYQILVHEDNSMPLLGSNPGPPDYQASA---WK-IGLI 170
+GL + ++ P DY S IG+I
Sbjct: 209 FTQGLNILEWLENPSNTP-------DKDYLLSIPISCPLIGVI 244
Score = 33.5 bits (76), Expect = 0.033
Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 46/151 (30%)
Query: 19 HTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSN 78
H+ LL P + + + S + I P+YD ++L R +
Sbjct: 428 HSHLLVPASDLINKD--LVKNNVSFNAKDIQI-------PVYDTFDGSDL----RVLSGS 474
Query: 79 -DPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGL------ 131
I+ I L + + T I +DF G +GL
Sbjct: 475 ISERIVDC------I-IRLPVKWETTTQFKA--THI-------LDFGPGGASGLGVLTHR 518
Query: 132 --DGKGLKYQILVHEDNSMPLLGSNPGPPDY 160
DG G+ +++V L NP DY
Sbjct: 519 NKDGTGV--RVIVAGT-----LDINP-DDDY 541
Score = 27.7 bits (61), Expect = 2.7
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 36/120 (30%)
Query: 58 PLYDFVHNNELVQMKRGTYSND--P--AIIRQNHRMTAIN------TCLEIDITGQVVSD 107
+ V E+V RG P + R N+ M AIN + + + Q V +
Sbjct: 1778 SIESLV---EVVF-YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVE 1831
Query: 108 SLGTRIYSGF----------GGQVDFMRGALTGLD--GKGLKY----QI-LVHEDNSMPL 150
+G R +G+ Q G L LD L + +I ++ S+ L
Sbjct: 1832 RVGKR--TGWLVEIVNYNVENQQY-VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 125 RGALTGLDGKGLKYQILVHEDNSMPLLGSN 154
+ AL L LK ++ D+S P L
Sbjct: 19 KQALKKLQAS-LK----LYADDSAPALAIK 43
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 2.7
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 17/82 (20%)
Query: 70 QMKRG----TYSNDPAIIRQNHRMT---------AINTC---LEIDITGQVVSDSLGTRI 113
Q+ G TY II Q +T A ++ V +G
Sbjct: 989 QIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCS 1048
Query: 114 YSGFGGQVDFMRGALTGLDGKG 135
SG GG V +RG
Sbjct: 1049 GSGMGG-VSALRGMFKDRFKDE 1069
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.404
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,602,817
Number of extensions: 148195
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 21
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)