RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2324
         (170 letters)



>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 274

 Score =  104 bits (261), Expect = 1e-28
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 1   KIPEAILSNI--KHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKP 58
            I  A++  +      NL +++E+L      L ++G +         G         +  
Sbjct: 43  SIANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRF-----ASGSSITLSPRRNAD 97

Query: 59  LYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGF 117
           ++  +   +   + R    ++   + +   +  INT LE DI G V S  + GT++ +G 
Sbjct: 98  VFGNLERYKDKLVLRPQEISNHPEVVRRLGIIGINTALEFDIYGNVNSTHVGGTKMMNGI 157

Query: 118 GGQVDFMRGA 127
           GG  DF R A
Sbjct: 158 GGSGDFARNA 167


>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 269

 Score = 98.0 bits (244), Expect = 5e-26
 Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 16/133 (12%)

Query: 2   IPEAILSNIK-HQINLGVHTE----LLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD 56
              A+   ++       +        +T  ++ L   G+I              T     
Sbjct: 41  ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLD---------TQSFDG 91

Query: 57  KPLYDFVHNNELVQMKRGTYSNDP-AIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIY 114
                   N   +++    Y+N              + + LEID+   V   +     + 
Sbjct: 92  DAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLR 151

Query: 115 SGFGGQVDFMRGA 127
              GG  D   GA
Sbjct: 152 GASGGHSDTAAGA 164


>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 221

 Score = 62.8 bits (152), Expect = 3e-13
 Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 17/126 (13%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP    + I   + + + +E           +G++      +        +  G     +
Sbjct: 26  IPLLASNFISPNMTVHLQSE-----------NGILGLGPYPLQNEVDADLINAG----KE 70

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
            V                 A+IR  H    +   +++   G + +  +  ++  G GG +
Sbjct: 71  TVTVLPGASYFSSD--ESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAM 128

Query: 122 DFMRGA 127
           D +  A
Sbjct: 129 DLVSSA 134


>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain
           {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 152

 Score = 24.8 bits (53), Expect = 4.4
 Identities = 8/61 (13%), Positives = 14/61 (22%)

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
               N  +   R   + D                   D+T   +       ++  F G  
Sbjct: 88  LHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYE 147

Query: 122 D 122
           D
Sbjct: 148 D 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,998
Number of extensions: 26248
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)