BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2326
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 102/176 (57%), Gaps = 27/176 (15%)
Query: 1 ITSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKV 60
I S C +I+WHFIGHLQ V K++ VPNL +ET+ +LA +VN++W K P + LKV
Sbjct: 82 ILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKV 141
Query: 61 FCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPN 120
QINTSGE++KHG P A+V H+ SC P+
Sbjct: 142 MVQINTSGEDSKHGLLPSETIAVVEHIKASC---------------------------PS 174
Query: 121 LEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLR 176
LEF GLMTIG +G+D GPNPDF L R+++C+KL + VELSMGMS D +
Sbjct: 175 LEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQ 230
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 103/176 (58%), Gaps = 27/176 (15%)
Query: 1 ITSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKV 60
I S C +I+WHFIGHLQ V K++ VPNL +ET+ +LA +VN++W + ++LKV
Sbjct: 82 ILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGSPERLKV 141
Query: 61 FCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPN 120
QINTSGEE+KHG P A+V H+ CP N
Sbjct: 142 MVQINTSGEESKHGLPPSETIAIVEHINAKCP---------------------------N 174
Query: 121 LEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLR 176
LEF GLMTIG +G+D GPNPDF L R+++CKKLN+ VELSMGMS+D +
Sbjct: 175 LEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQ 230
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 99/176 (56%), Gaps = 27/176 (15%)
Query: 1 ITSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKV 60
I S C +I+WHFIGHLQ V K++ VPNL +ET+ +LA +VN+AW K ++LKV
Sbjct: 82 ILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSAWQKKGSPERLKV 141
Query: 61 FCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPN 120
QINTSGE +KHG P ALV H+ C P+
Sbjct: 142 MVQINTSGEASKHGLPPAEMAALVEHINAKC---------------------------PS 174
Query: 121 LEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLR 176
LEF GLMTIG +G+D GPNPDF L R+++C+KL VELSMGMS D +
Sbjct: 175 LEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQ 230
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 101/176 (57%), Gaps = 27/176 (15%)
Query: 1 ITSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKV 60
I S +I+WHFIGHLQ V K++ VPNL +ET+ +LA +VN++W K ++LKV
Sbjct: 82 ILSLGPEIKWHFIGHLQKQNVNKLMAVPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKV 141
Query: 61 FCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPN 120
QINTSGEE+KHG P A+V H+ CP N
Sbjct: 142 MVQINTSGEESKHGLPPSETIAIVEHINAKCP---------------------------N 174
Query: 121 LEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLR 176
LEF GLMTIG +G+D GPNPDF L R+++CKKLN+ VELSMGMS D +
Sbjct: 175 LEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQ 230
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 30/177 (16%)
Query: 1 ITSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPD-KKLK 59
+ SKC DIRWHFIG +QSNK+ K+ P L +ET+ + A + W+KH + L+
Sbjct: 70 LASKCLDIRWHFIGQVQSNKIGKICNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLR 129
Query: 60 VFCQINTSGEENKHGAHPEHAEALVSHVINSCPNL-EFTDKHGAHPEHAEALVSHVINSC 118
V Q+NTSGE+NK G I P L EF K C
Sbjct: 130 VLVQVNTSGEDNKGGIE-----------IGEAPKLAEFIRKE-----------------C 161
Query: 119 PNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
NL+F G MTIG + G NPDF +L K R+ ++ + +VELSMGMS D
Sbjct: 162 QNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDF 218
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 36/176 (20%)
Query: 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFC--QI 64
DI+WHFIG LQ+NK + KVPNL +ETI + A ++N + AK QPD + C QI
Sbjct: 85 DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCN-PILCNVQI 143
Query: 65 NTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFT 124
NTS E+ K G + E E E + + C ++
Sbjct: 144 NTSHEDQKSGLNNE-------------------------AEIFEVIDFFLSEECKYIKLN 178
Query: 125 GLMTIGKYGY---DTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRE 177
GLMTIG + D+K N DF L + +K + K ++++LSMGMS+D RE
Sbjct: 179 GLMTIGSWNVSHEDSKE--NRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFRE 229
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 78/168 (46%), Gaps = 33/168 (19%)
Query: 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT 66
D++WHFIG LQS+K K+ V NL IETI + A VN+A Q L V+ Q+NT
Sbjct: 67 DVQWHFIGSLQSSKCKKIASVKNLYSIETIDTEKKARLVNSAREALQL--PLNVYIQVNT 124
Query: 67 SGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGL 126
SGEENK G P S V+ C + L GL
Sbjct: 125 SGEENKGGVTP-------SKVLELCKQ---------------------VQDMKYLRLKGL 156
Query: 127 MTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSD 174
MTIG NPDF L+ R+ + +L + ++LSMGMSSD
Sbjct: 157 MTIGSISNSQLSDHNPDFQVLSDLRESLQNELGI---PLQLSMGMSSD 201
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 48/188 (25%)
Query: 3 SKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLK--- 59
S+ +I+WHFIG +QSNK + V NL +ET+ + ++ ++ + ++ +
Sbjct: 74 SELNEIKWHFIGSIQSNKSKILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNN 133
Query: 60 ------VFCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSH 113
+ Q+NTSGEE+K G PE LV H +
Sbjct: 134 NNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLED----------------------- 170
Query: 114 VINSCPN-LEFTGLMTIGKYGYDTKHGPN-----PDFLELAKCRKDVCKKLNLNESNVEL 167
N+C N L F GLMTIG PN PDF L C+ ++ K+LN+ ++EL
Sbjct: 171 --NNCKNSLNFLGLMTIG--------NPNATPDQPDFKCLVDCKNNISKQLNIPLDSIEL 220
Query: 168 SMGMSSDL 175
SMGMS D
Sbjct: 221 SMGMSHDF 228
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 36/169 (21%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS 67
+ WHFIG LQSNK V + + +++ TI ++A +++ + P L+V Q+NTS
Sbjct: 78 LEWHFIGPLQSNKTRLVAE--HFDWVHTIDREKIALRLSEQRPVNMP--PLQVLIQVNTS 133
Query: 68 GEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLM 127
GE +K G P+ FT ++ +I+ PNL GLM
Sbjct: 134 GEASKSGIEPQQL---------------FT-------------LAELISRLPNLTLRGLM 165
Query: 128 TIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLR 176
+I + D F +LA+ ++ + +K ++ LSMGMS D++
Sbjct: 166 SIPENVPDYP-AQLAAFTQLAELQQQLAQKYPQIDT---LSMGMSGDMQ 210
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 35/169 (20%)
Query: 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT 66
D+ WHFIG LQ+NKV ++ L I ++ LA ++ K+ + V ++N
Sbjct: 72 DLEWHFIGRLQTNKVKYLMGKVVL--IHSLDRKNLADEIQKRAFKNNIVQD--VLIEVNV 127
Query: 67 SGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGL 126
GEE K G PE+ + L + + PN++ GL
Sbjct: 128 GGEETKGGVEPENLKELFEYTL----------------------------ELPNVKVLGL 159
Query: 127 MTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
MTI Y + P F +L + R ++ ++ N+ + LSMGMS D
Sbjct: 160 MTIPPY-LENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDF 205
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 40/170 (23%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPD--KKLKVFCQIN 65
I WHFIG +QSNK V + + +++ TI T++A ++N+ +P K L+V Q+N
Sbjct: 78 IEWHFIGPIQSNKSRLVAE--HFDWVHTIDRTKIAQRLND----QRPSELKPLQVLIQVN 131
Query: 66 TSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTG 125
TSGE +K G EA V ++ +I+ PNL G
Sbjct: 132 TSGEASKSGV----TEAEVFE------------------------LAELISRLPNLTLRG 163
Query: 126 LMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
LM+I D + + +F +LA ++ + + ++ LSMGMS D+
Sbjct: 164 LMSIPANVSDYESQLH-EFQKLATLKQTLEAQFPEIDT---LSMGMSGDM 209
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 42/177 (23%)
Query: 3 SKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKK--LKV 60
S+ ++ WHFIG LQSNK V + + ++++T+ ++A ++N + +P K L V
Sbjct: 70 SQGINLEWHFIGPLQSNKTRLVAE--HFDWMQTLDRAKIADRLN----EQRPTNKAPLNV 123
Query: 61 FCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPN 120
QIN S EE+K G PE L H+ N P+
Sbjct: 124 LIQINISDEESKSGIQPEEMLTLAKHIEN----------------------------LPH 155
Query: 121 LEFTGLMTIGKYGYDTKHGPNP--DFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
L GLM I + N LEL + K V N+ LSMGM+ D+
Sbjct: 156 LCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVLP----NQQIDTLSMGMTDDM 208
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 6 KDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQIN 65
+DI WHFIG LQSNK KV++ N YI ++ + +A +++ + +K + QI
Sbjct: 62 QDINWHFIGRLQSNKARKVVE--NFTYIHSVDNLAIAVKLDR--IAEELNKFPQGLLQIK 117
Query: 66 TSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTG 125
+ENK G E + P LE NL+ G
Sbjct: 118 LLPDENKSGWTREELKL-------DLPQLEL---------------------LKNLKICG 149
Query: 126 LMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRE 177
LMTI G + F EL + ++ +L S ELSMGMS D E
Sbjct: 150 LMTILPLGL-SPGDRQLTFGELKNLATAINQQSSL--SLTELSMGMSGDYPE 198
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 36/166 (21%)
Query: 10 WHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE 69
WHFIG LQS K V+ ++ YI ++ LA ++ + + + ++ F Q+NTS E
Sbjct: 74 WHFIGSLQSRKAKSVVN--SVSYIHSLDRLSLAKEI-----EKRAEGTVRCFVQVNTSLE 126
Query: 70 ENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTI 129
+KHG E V I E H++ GLMT+
Sbjct: 127 PSKHGMKKEE----VIPFIQELSGFE-----------------HIL-------VAGLMTM 158
Query: 130 GKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
D + F L + R V K N ELSMGMS+D
Sbjct: 159 APL-TDDQDQIRSCFRSLRELRDQVQKLNQPNAPCTELSMGMSNDF 203
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS 67
+ WHFIG +QSNK + + + +++ ++ ++A +++ P L V Q+N S
Sbjct: 74 LNWHFIGPIQSNKTRPIAE--HFQWVHSVDRLKIAQRLSEQRPAGLP--PLNVCLQVNVS 129
Query: 68 GEENKHGAHPEHAEALVSHVINSCPNLEF 96
GE +K G PE AL + + PNL
Sbjct: 130 GEASKSGCAPEDLPAL-AEAVKQLPNLRL 157
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS 67
+ WHFIG LQSNK V + + ++++T+ ++A ++N ++ K L V QIN S
Sbjct: 75 LEWHFIGPLQSNKTKLVAE--HFDWMQTLDRKKIADRLNEQRPHYK--KPLNVLIQINIS 130
Query: 68 GEENKHGAHPEHAEALVSHVIN 89
E++K G P L + N
Sbjct: 131 DEDSKSGIQPNEMLDLAKQIQN 152
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 4 KCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQ 63
K K+I WHFIG +QSNK K+ N + +T+ ++A +N K+ P + V Q
Sbjct: 46 KYKNITWHFIGKIQSNKTKKI--AQNFSWCQTVDREKIAVLLNKFRPKNLPP--INVLIQ 101
Query: 64 INTSGEENKHGAHPEHAEALVSHVINSCPNLEF 96
IN E + ++ E ++ +I S PNL
Sbjct: 102 INNLKELQNNRYIDQYQE--LAQLILSMPNLNL 132
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 4 KCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKK--LKVF 61
K ++I WHFIG +QSNK I N ++ +TI ++A +N K++ K + V
Sbjct: 71 KYQNIIWHFIGKVQSNKTK--IIAENFDWCQTIDREKIAILLN----KYREKKSFPMNVL 124
Query: 62 CQINTSGEENKHGAHPEHAEALVSHVINSCPNLEF 96
QIN S E K+G ++ + L + I+ PNL F
Sbjct: 125 MQINISNEVTKNGICIKNYKKL-AKTISLMPNLNF 158
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS 67
+ WHFIG LQSNK V + + ++ TI R+AT++N+ P L V QIN S
Sbjct: 77 LEWHFIGPLQSNKSRLVAE--HFDWCHTIDRLRIATRLNDQRPAELP--PLNVLIQINIS 132
Query: 68 GEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLM 127
E +K G + L + V P L +E + + + F GL
Sbjct: 133 DENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLK 191
Query: 128 T 128
T
Sbjct: 192 T 192
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS 67
+ WHFIG LQSNK V + + ++ TI R+AT++N+ P L V QIN S
Sbjct: 77 LEWHFIGPLQSNKSRLVAE--HFDWCHTIDRLRIATRLNDQRPAELP--PLNVLIQINIS 132
Query: 68 GEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLM 127
E +K G + L + V P L +E + + + F GL
Sbjct: 133 DENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLK 191
Query: 128 T 128
T
Sbjct: 192 T 192
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS 67
+ WHFIG LQSNK V + + ++ TI R+AT++N+ P L V QIN S
Sbjct: 77 LEWHFIGPLQSNKSRLVAE--HFDWCHTIDRLRIATRLNDQRPAELP--PLNVLIQINIS 132
Query: 68 GEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLM 127
E +K G + L + V P L +E + + + F GL
Sbjct: 133 DENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLK 191
Query: 128 T 128
T
Sbjct: 192 T 192
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 8 IRWHFIGHLQSNKVPKVIKV-PNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT 66
+ WH IG LQ NK+ ++ + P L + ++ +LA ++ + L Q+N+
Sbjct: 73 LEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN--LNALLQVNS 128
Query: 67 SGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGL 126
+ EE+K G PE A LE + S + +C +L+ GL
Sbjct: 129 AYEESKSGVVPEEA-------------LE--------------IYSQISETCKHLKLKGL 161
Query: 127 MTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
M IG + D K E+ K K + ++ LSMGMS D
Sbjct: 162 MCIGAHTDDEK--------EIEKSFITTKKLFDQIKNASVLSMGMSDDF 202
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 8 IRWHFIGHLQSNKVPKVIKV-PNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT 66
+ WH IG LQ NK+ ++ + P L + ++ +LA ++ + L Q+N+
Sbjct: 73 LEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN--LNALLQVNS 128
Query: 67 SGEENKHGAHPEHAEALVSHVINSCPNLEFTDKH--GAHPE 105
+ EE+K G PE A S + +C L+ GAH +
Sbjct: 129 AYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTD 169
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 38/172 (22%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNN----AWAKHQPDKKLKVFCQ 63
+ WH +G +Q NK + + + + ++ +RL T ++ A A+H+ ++L+V+ Q
Sbjct: 95 VHWHMVGRIQRNKAGSLARWAHTAH--SVDSSRLVTALDRAVVAALAEHRRGERLRVYVQ 152
Query: 64 INTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEF 123
++ G+ ++ G V ++ P D+ A + +E LE
Sbjct: 153 VSLDGDGSRGG------------VDSTTPG--AVDRICAQVQESE-----------GLEL 187
Query: 124 TGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
GLM I +D P+ F L V + + LS GMS+DL
Sbjct: 188 VGLMGIPPLDWD----PDEAFDRLQSEHNRVRA---MFPHAIGLSAGMSNDL 232
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 38/172 (22%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNN----AWAKHQPDKKLKVFCQ 63
+ WH +G +Q NK + + + + ++ +RL T ++ A A+H+ ++L+V+ Q
Sbjct: 95 VHWHMVGRIQRNKAGSLARWAHTAH--SVDSSRLVTALDRAVVAALAEHRRGERLRVYVQ 152
Query: 64 INTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEF 123
++ G+ ++ G V ++ P D+ A + +E LE
Sbjct: 153 VSLDGDGSRGG------------VDSTTPG--AVDRICAQVQESE-----------GLEL 187
Query: 124 TGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
GLM I +D P+ F L V + + LS GMS+DL
Sbjct: 188 VGLMGIPPLDWD----PDEAFDRLQSEHNRVRA---MFPHAIGLSAGMSNDL 232
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 57/165 (34%), Gaps = 45/165 (27%)
Query: 10 WHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE 69
WHFIG LQ NK+ + V + IE + W + V Q +GE
Sbjct: 70 WHFIGPLQRNKIKYLRGVTLVHSIEEPWQAQAIADAAAEWGQAP-----AVLLQ-RHNGE 123
Query: 70 ENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTI 129
KHG P+ A++ V LE GLM +
Sbjct: 124 GQKHGVLPDDLPAVLREV-----------------------------RATGLEVRGLMAM 154
Query: 130 GKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSD 174
YD + F + A+ +D+ VELSMGMS D
Sbjct: 155 AP--YDDEARAAQVFADTARQAQDL--------GLVELSMGMSGD 189
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDK--KLKVFCQI 64
+I WH+IG +QSNK + K N + TI + + A +N K++P KL QI
Sbjct: 71 NIEWHYIGQIQSNKAHIIAK--NFSWCHTITNKKTAVLLN----KYRPYSLPKLNTLIQI 124
Query: 65 NTSGEENKHGAHPEHAEALVSHVINSCPNLEF 96
N E + L + INS NL
Sbjct: 125 NIRDNTINIDDDIETIKQL-AKTINSLDNLNL 155
>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 139 GPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERES 180
G NPDF L CR++V ++L + +S EL+ + ++L ES
Sbjct: 57 GANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLES 98
>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 139 GPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERES 180
G NPDF L CR++V ++L + +S EL+ + ++L ES
Sbjct: 57 GANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLES 98
>sp|D4AX50|SUB8_ARTBC Subtilisin-like protease 8 OS=Arthroderma benhamiae (strain ATCC
MYA-4681 / CBS 112371) GN=SUB8 PE=3 SV=1
Length = 490
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 12 FIGHLQSNKVPKVIKVPNLEYIET---IHDTRLATQVNNAWAKHQPDKKLKVFCQINTSG 68
+ GH + +V + P++EYIE +H + AT+ W + + K+ G
Sbjct: 105 YSGHFDEEVIEQVRRHPDVEYIERDSEVHTLKAATENGAPWGLARISHRDKL-----NFG 159
Query: 69 EENKHGAHPEHAEALVSHVINSCPNLEFTDKHG 101
NK+ + E + ++VI++ N++ D G
Sbjct: 160 TFNKYIYASQGGEGVDAYVIDTGTNIDHVDFEG 192
>sp|D4DKQ4|SUB8_TRIVH Subtilisin-like protease 8 OS=Trichophyton verrucosum (strain HKI
0517) GN=SUB8 PE=3 SV=1
Length = 490
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 12 FIGHLQSNKVPKVIKVPNLEYIET---IHDTRLATQVNNAWAKHQPDKKLKVFCQINTSG 68
+ GH + +V + P++EYIE +H + AT+ W + + K+ G
Sbjct: 105 YSGHFDEEVIEQVRRHPDVEYIERDSEVHTLKAATENGAPWGLARISHRDKL-----NFG 159
Query: 69 EENKHGAHPEHAEALVSHVINSCPNLEFTDKHG 101
NK+ + E + ++VI++ N++ D G
Sbjct: 160 TFNKYIYASQGGEGVDAYVIDTGTNIDHVDFEG 192
>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens
GN=RABGGTA PE=1 SV=2
Length = 567
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 139 GPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERES 180
G NPDF L CR++V ++L +S EL+ + ++L ES
Sbjct: 57 GANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLES 98
>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 139 GPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERES 180
G NPDF L CR++V ++L +S EL+ + ++L ES
Sbjct: 57 GANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLES 98
>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus
GN=Rabggta PE=1 SV=1
Length = 567
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 139 GPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERES 180
G NPDF L CR++V ++L +S EL+ + ++L ES
Sbjct: 57 GANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLES 98
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 40/173 (23%)
Query: 8 IRWHFIGHLQSNKVPKVIKVPNLEY-IETIH----DTRLATQVNNAWAKHQPDKKLKVFC 62
I WH +G +Q NKV + + + + I+++ R + QP L+V+
Sbjct: 94 IHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALAGGRREQP---LQVYV 150
Query: 63 QINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLE 122
QI+ G+ ++ G + A V C +E +LE
Sbjct: 151 QISLDGDISRGGVNVTAPGA----VDRVCAQVE---------------------ESKSLE 185
Query: 123 FTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
GLM I G++ P+ F +L R + + L + + LS GMS+D
Sbjct: 186 LVGLMGIPPLGWN----PDQAFEQL---RLEHRRVLRSHPDAIGLSAGMSNDF 231
>sp|P33295|PEPC_ASPNG Subtilisin-like serine protease pepC OS=Aspergillus niger GN=pepC
PE=3 SV=1
Length = 533
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 12 FIGHLQSNKVPKVIKVPNLEYIET---IHDTRLATQVNNAWAKHQPDKKLKVFCQINTSG 68
+ GH + + +V + P+++YIE +H AT+ N W + + + T G
Sbjct: 106 YSGHFHEDVIEQVRRHPDVDYIERDSEVHTMEGATEKNAPWGLARISHRDSL-----TFG 160
Query: 69 EENKHGAHPEHAEALVSHVINSCPNLEFTDKHG 101
NK+ E E + ++ I++ N++ D G
Sbjct: 161 NFNKYLYASEGGEGVDAYTIDTGINVDHVDFEG 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,832,852
Number of Sequences: 539616
Number of extensions: 2773295
Number of successful extensions: 6185
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6131
Number of HSP's gapped (non-prelim): 49
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)