Query psy2326
Match_columns 181
No_of_seqs 195 out of 1013
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:46:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sy1_A UPF0001 protein YGGS; e 100.0 6.3E-39 2.1E-43 271.4 12.7 140 5-180 75-214 (245)
2 3r79_A Uncharacterized protein 100.0 1.7E-36 6E-41 257.2 14.0 133 5-181 75-207 (244)
3 1ct5_A Protein (yeast hypothet 100.0 7.6E-34 2.6E-38 240.9 15.8 143 7-181 84-232 (256)
4 3cpg_A Uncharacterized protein 99.9 3.6E-27 1.2E-31 200.6 14.0 141 7-180 114-255 (282)
5 3gwq_A D-serine deaminase; str 99.9 7.4E-22 2.5E-26 177.2 12.1 138 9-180 120-260 (426)
6 1vfs_A Alanine racemase; TIM-b 99.7 1.4E-16 4.8E-21 139.8 13.3 134 10-179 81-216 (386)
7 1xfc_A Alanine racemase; alpha 99.7 1.4E-16 4.6E-21 139.6 13.0 132 9-179 84-220 (384)
8 1rcq_A Catabolic alanine racem 99.7 6E-16 2.1E-20 134.1 11.5 127 7-179 74-200 (357)
9 2rjg_A Alanine racemase; alpha 99.6 1.4E-15 4.6E-20 133.8 10.5 124 11-179 97-221 (379)
10 2j66_A BTRK, decarboxylase; bu 99.6 2E-15 6.8E-20 133.5 11.5 129 8-172 86-228 (428)
11 2dy3_A Alanine racemase; alpha 99.6 2.3E-15 7.7E-20 130.4 9.8 130 9-179 76-206 (361)
12 1bd0_A Alanine racemase; isome 99.6 1.4E-14 4.7E-19 127.8 13.2 129 10-179 82-211 (388)
13 2vd8_A Alanine racemase; pyrid 99.6 1.1E-14 3.9E-19 128.0 12.6 127 11-177 87-216 (391)
14 4ecl_A Serine racemase, vantg; 99.5 1.2E-14 4E-19 128.7 9.1 129 7-178 78-210 (374)
15 1twi_A Diaminopimelate decarbo 99.5 1.9E-14 6.3E-19 127.5 10.2 128 8-172 106-250 (434)
16 3llx_A Predicted amino acid al 99.5 9.5E-14 3.2E-18 121.6 13.2 127 14-180 90-226 (376)
17 2qgh_A Diaminopimelate decarbo 99.5 5.8E-14 2E-18 124.6 11.6 129 8-172 103-245 (425)
18 3co8_A Alanine racemase; prote 99.5 7.4E-14 2.5E-18 122.4 10.9 127 10-179 83-211 (380)
19 3anu_A D-serine dehydratase; P 99.5 2.2E-13 7.6E-18 118.1 10.6 129 12-177 86-228 (376)
20 2p3e_A Diaminopimelate decarbo 99.5 5.3E-13 1.8E-17 117.5 12.6 128 9-172 103-244 (420)
21 3e5p_A Alanine racemase; ALR, 99.4 2.4E-13 8.2E-18 120.4 9.8 129 7-175 80-210 (371)
22 3kw3_A Alanine racemase; niaid 99.4 2.3E-13 7.9E-18 121.0 9.7 127 7-175 92-218 (376)
23 3mub_A Alanine racemase; alpha 99.4 8.3E-13 2.8E-17 116.8 12.6 127 7-175 79-206 (367)
24 2o0t_A Diaminopimelate decarbo 99.4 3.6E-13 1.2E-17 121.3 9.5 129 8-171 111-259 (467)
25 4a3q_A Alanine racemase 1; iso 99.4 7.5E-13 2.6E-17 117.9 8.4 128 7-175 79-207 (382)
26 3hur_A Alanine racemase; struc 99.2 1.2E-11 4E-16 111.0 7.7 90 7-135 81-171 (395)
27 3vab_A Diaminopimelate decarbo 99.1 6.1E-10 2.1E-14 100.2 11.2 126 10-171 121-260 (443)
28 3n2b_A Diaminopimelate decarbo 99.1 6.7E-10 2.3E-14 99.9 10.6 127 10-171 124-263 (441)
29 2nva_A Arginine decarboxylase, 98.8 3.6E-08 1.2E-12 85.5 10.8 124 9-172 86-216 (372)
30 2plj_A Lysine/ornithine decarb 98.6 1.1E-07 3.6E-12 84.7 8.9 125 9-172 124-255 (419)
31 3n2o_A ADC, biosynthetic argin 98.4 1E-06 3.5E-11 83.7 10.4 107 30-170 174-293 (648)
32 3nzq_A ADC, biosynthetic argin 98.4 1.2E-06 4.3E-11 83.4 11.0 108 30-171 191-311 (666)
33 3nzp_A Arginine decarboxylase; 98.4 1.7E-06 5.7E-11 81.8 10.5 108 30-170 151-272 (619)
34 7odc_A Protein (ornithine deca 98.4 2.4E-06 8.3E-11 76.2 11.0 123 9-171 107-236 (424)
35 3btn_A Antizyme inhibitor 1; T 98.0 4.4E-05 1.5E-09 68.4 10.6 120 12-172 110-237 (448)
36 1f3t_A ODC, ornithine decarbox 98.0 4.2E-05 1.4E-09 67.8 10.2 121 12-172 110-237 (425)
37 2oo0_A ODC, ornithine decarbox 97.9 9.5E-05 3.3E-09 66.9 10.9 121 12-172 120-247 (471)
38 2yxx_A Diaminopimelate decarbo 97.7 0.00013 4.3E-09 63.4 8.5 84 11-133 86-183 (386)
39 1knw_A Diaminopimelate decarbo 97.6 0.00024 8.3E-09 62.9 9.3 114 12-170 99-225 (425)
40 3n29_A Carboxynorspermidine de 96.8 0.0036 1.2E-07 55.9 8.0 65 8-81 112-189 (418)
41 3mt1_A Putative carboxynorsper 96.5 0.0083 2.8E-07 52.1 8.3 65 8-81 72-149 (365)
42 4h08_A Putative hydrolase; GDS 30.5 1.6E+02 0.0054 21.5 8.8 91 39-160 60-154 (200)
43 2xtk_A CHIA1, class III chitin 29.5 81 0.0028 26.7 5.4 46 57-130 239-286 (310)
44 1q7z_A 5-methyltetrahydrofolat 26.9 2.5E+02 0.0086 25.7 8.6 84 30-120 142-226 (566)
45 3ebv_A Chinitase A; chitinase 20.0 1.1E+02 0.0039 25.5 4.5 25 57-81 216-241 (302)
No 1
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=6.3e-39 Score=271.43 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=128.0
Q ss_pred CCCceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhh
Q psy2326 5 CKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALV 84 (181)
Q Consensus 5 ~~di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~ 84 (181)
||+|.|||||++|+||++.++. ++++++||||.++|+.|++++.+.++ +++|+||||||+|.+|+|+.|+++.
T Consensus 75 ~~~i~w~~iG~lq~nk~~~~~~--~~~~i~sVds~~~a~~l~~~a~~~~~--~~~V~lqVntG~e~~R~G~~~ee~~--- 147 (245)
T 3sy1_A 75 VTGLEWNFAGPLQSNKSRLVAE--HFDWCITIDRLRIATRLNDQRPAELP--PLNVLIQINISDENSKSGIQLAELD--- 147 (245)
T ss_dssp CCSCEEEECSCCCGGGHHHHHH--HCSEEEEECCHHHHHHHHHHSCTTSC--CEEEEEEBCCSCTTCCSSBCGGGHH---
T ss_pred CCCeEEeecCCCChHHHHHHHH--HCCEEEecCCHHHHHHHHHHHHHcCC--CceEEEEEECCCCcCCcCCCHHHHH---
Confidence 4689999999999999999986 68999999999999999999988887 9999999999999999999999988
Q ss_pred hhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q psy2326 85 SHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESN 164 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~ 164 (181)
++++.+ .++|+|+++|||||+|..++ .+..++.|++|++++++|+++++ ..
T Consensus 148 ------------------------~l~~~i-~~~~~l~l~Glmt~~~~~~d-~~~~~~~f~~l~~l~~~l~~~~~---~~ 198 (245)
T 3sy1_A 148 ------------------------ELAAAV-AELPRLRLRGLSAIPAPESE-YVRQFEVARQMAVAFAGLKTRYP---HI 198 (245)
T ss_dssp ------------------------HHHHHH-TTCTTEEEEEEECCCCCCSC-HHHHHHHHHHHHHHHHHHHTTST---TC
T ss_pred ------------------------HHHHHH-HcCCCCeEEEEEEeCCCCCC-HHHHHHHHHHHHHHHHHHHHhCC---CC
Confidence 899998 68999999999999999876 34568899999999999987643 37
Q ss_pred CEEeeCCcchHHHHhc
Q psy2326 165 VELSMGMSSDLRERES 180 (181)
Q Consensus 165 ~~LSMGMS~D~~~AI~ 180 (181)
.+||||||+||+.||+
T Consensus 199 ~~LSmGmS~d~~~Ai~ 214 (245)
T 3sy1_A 199 DTLALGQSDDMEAAIA 214 (245)
T ss_dssp CEEECCCSTTHHHHHH
T ss_pred CEEeccCcHhHHHHHH
Confidence 8999999999999986
No 2
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.7e-36 Score=257.21 Aligned_cols=133 Identities=32% Similarity=0.458 Sum_probs=121.0
Q ss_pred CCCceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhh
Q psy2326 5 CKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALV 84 (181)
Q Consensus 5 ~~di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~ 84 (181)
+|+|.|||||++|+||++.+++ ++++++||||.++|+.|++++.+.++ +++|+||||||+|.+|+|+.|+++.
T Consensus 75 ~~~i~wh~iG~lq~nk~~~~v~--~~~~i~sVds~~~a~~L~~~a~~~g~--~~~V~LqVdtG~e~~R~Gv~~ee~~--- 147 (244)
T 3r79_A 75 TSDIELHLIGPLQSNKAADAVA--LFDVVESIDREKIARALSEECARQGR--SLRFYVQVNTGLEPQKAGIDPRETV--- 147 (244)
T ss_dssp STTCEEEECSCCCGGGHHHHHH--HCSEEEEECSHHHHHHHHHHHHHHTC--CCEEEEEBCTTCCTTSCSBCHHHHH---
T ss_pred CCCeEEEecCCCCHHHHHHHHH--HCCEEEeeCCHHHHHHHHHHHHHcCC--CceEEEEEECCCCcCCCCCCHHHHH---
Confidence 4689999999999999999986 68999999999999999999999888 9999999999999999999999988
Q ss_pred hhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q psy2326 85 SHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESN 164 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~ 164 (181)
++++.| .+||+|+++|||||+|..++ +.+.|+.|+++++.+ + .
T Consensus 148 ------------------------~l~~~i-~~l~~L~l~GlmTh~a~~dd----~~~~f~~l~~l~~~l----~----~ 190 (244)
T 3r79_A 148 ------------------------AFVAFC-RDELKLPVEGLMCIPPAEEN----PGPHFALLAKLAGQC----G----L 190 (244)
T ss_dssp ------------------------HHHHHH-HHTSCCCCCEEECCCCTTSC----SHHHHHHHHHHHHHH----T----C
T ss_pred ------------------------HHHHHH-HcCCCCEEEEEEecCCCCCC----HHHHHHHHHHHHHhC----C----C
Confidence 899998 67999999999999998765 238899999998765 2 5
Q ss_pred CEEeeCCcchHHHHhcC
Q psy2326 165 VELSMGMSSDLRERESS 181 (181)
Q Consensus 165 ~~LSMGMS~D~~~AI~~ 181 (181)
.+||||||+||+.||+.
T Consensus 191 ~~lSmGmS~d~~~Ai~~ 207 (244)
T 3r79_A 191 EKLSMGMSGDFETAVEF 207 (244)
T ss_dssp CEEECCCTTTHHHHHHT
T ss_pred CEEEeecchhHHHHHHc
Confidence 69999999999999973
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=7.6e-34 Score=240.89 Aligned_cols=143 Identities=38% Similarity=0.600 Sum_probs=118.1
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCC-CCCceEEEEEeCCCCCccCCCCc-cchhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQP-DKKLKVFCQINTSGEENKHGAHP-EHAEALV 84 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~-~~~l~VliQVN~s~E~~K~Gv~p-~~~~~~~ 84 (181)
++.|||||++|+||++.+++++++++++||||.++|+.|++++.+.++ ..+++|+||||||+|.+|+|+.| +++.
T Consensus 84 ~l~~h~iG~lq~nk~~~~~~~~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~--- 160 (256)
T 1ct5_A 84 DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIF--- 160 (256)
T ss_dssp TCEEEECSCCCGGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHH---
T ss_pred CeeEeecCCCCHHHHHHHhcccccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHH---
Confidence 599999999999999999333379999999999999999999988763 11699999999999999999999 8888
Q ss_pred hhhccCCCCCcccCCCCCCchhHHHHHHHHHh--hCCCceEeeeeecC--CCCCCCCCCccHHHHHHHHHHHHHHHhcCC
Q psy2326 85 SHVINSCPNLEFTDKHGAHPEHAEALVSHVIN--SCPNLEFTGLMTIG--KYGYDTKHGPNPDFLELAKCRKDVCKKLNL 160 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~p~L~l~GLMTi~--~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~ 160 (181)
++++.| . .||+|+++|||||+ +..++ ++..++.|+.++++++.|++.+
T Consensus 161 ------------------------~l~~~i-~~~~~~~L~l~Glmth~~~~~ad~-~~~~~~~f~~~~~~~~~l~~~~-- 212 (256)
T 1ct5_A 161 ------------------------EVIDFF-LSEECKYIKLNGLMTIGSWNVSHE-DSKENRDFATLVEWKKKIDAKF-- 212 (256)
T ss_dssp ------------------------HHHHHH-HSTTCCSEEEEEEECCCCCC----------HHHHHHHHHHHHHHHHH--
T ss_pred ------------------------HHHHHH-HHccCCCeeEEEEEEECCcCCCCC-HHHHHHHHHHHHHHHHHHHhcC--
Confidence 899998 6 79999999999999 76654 3347889999999999998733
Q ss_pred CCCCCEEeeCCcchHHHHhcC
Q psy2326 161 NESNVELSMGMSSDLRERESS 181 (181)
Q Consensus 161 ~~~~~~LSMGMS~D~~~AI~~ 181 (181)
+ ...+||||||+||+.||+.
T Consensus 213 ~-~~~~lS~Gms~d~~~ai~~ 232 (256)
T 1ct5_A 213 G-TSLKLSMGMSADFREAIRQ 232 (256)
T ss_dssp C-CCCEEECCCTTTHHHHHHT
T ss_pred C-CCCEEEecccHhHHHHHHc
Confidence 2 3678999999999999863
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.95 E-value=3.6e-27 Score=200.57 Aligned_cols=141 Identities=32% Similarity=0.462 Sum_probs=122.9
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSH 86 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~ 86 (181)
.|.|||||++|+||++.+++ +++++++|||.+.++.|++++.+.++ +++|+|+||+|.|++|+|+.|+++.
T Consensus 114 ~i~~~~iG~~~~~~~~~~~~--~~~l~~~Vds~~~l~~L~~~a~~~~~--~~~V~lkVdtGme~~R~G~~~ee~~----- 184 (282)
T 3cpg_A 114 HIPFHLIGQLQSNKIGKVLP--VVDTIESVDSIDLAEKISRRAVARGI--TVGVLLEVNESGEESKSGCDPAHAI----- 184 (282)
T ss_dssp EECEEECSCCCGGGHHHHTT--TCSEEEEECCHHHHHHHHHHHHHHTC--CEEEEEEBCCSSCTTSSSBCGGGHH-----
T ss_pred ceeeeecChhHHHHHHHHHH--hCCEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEEECCCCCCCCCcCHHHHH-----
Confidence 58999999999999999976 67899999999999999999988887 8999999999999999999999988
Q ss_pred hccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCC-CCCC
Q psy2326 87 VINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLN-ESNV 165 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~-~~~~ 165 (181)
++++.+ .++|+|++.||||+.+..++ .+..+..|+.+.++++.+++.++++ ....
T Consensus 185 ----------------------~l~~~i-~~~~~l~l~Gl~th~~~~~~-~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~ 240 (282)
T 3cpg_A 185 ----------------------RIAQKI-GTLDGIELQGLMTIGAHVHD-ETVIRRGFSHLRKTRDLILASGEPGTDRCR 240 (282)
T ss_dssp ----------------------HHHHHH-HTCTTEEEEEEECCCCCSSC-HHHHHHHHHHHHHHHHHHHHHCCTTCTTCC
T ss_pred ----------------------HHHHHH-HhCCCceEEeEEEECCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 889998 57999999999999997754 2234568999999999998754543 2367
Q ss_pred EEeeCCcchHHHHhc
Q psy2326 166 ELSMGMSSDLRERES 180 (181)
Q Consensus 166 ~LSMGMS~D~~~AI~ 180 (181)
.+|||||+||..+++
T Consensus 241 ~lS~g~S~~~~~~~~ 255 (282)
T 3cpg_A 241 ELSMGMTGDMELAIA 255 (282)
T ss_dssp EEECCCTTTHHHHHH
T ss_pred EEEecCcHhHHHHHH
Confidence 899999999998875
No 5
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.86 E-value=7.4e-22 Score=177.21 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=112.9
Q ss_pred eeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCc-cchhhhhhhh
Q psy2326 9 RWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHP-EHAEALVSHV 87 (181)
Q Consensus 9 ~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p-~~~~~~~~~~ 87 (181)
.|+++|+-+.+++..+++.+.++++++|||.+.++.|++.+.+.++ +++|+||||++ .+|+|+.| +++.
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~--~~~V~l~VdtG--~~R~Gv~~~~e~~------ 189 (426)
T 3gwq_A 120 ANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK--QLQVLLELGVP--GGRTGVRDAAQRN------ 189 (426)
T ss_dssp CSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC--CEEEEEEECCT--TSSSSBCSHHHHH------
T ss_pred ECCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCC--eeEEEEEeCCC--CCcCCCCCHHHHH------
Confidence 5677776555554444432346899999999999999999999887 99999999998 78999985 7887
Q ss_pred ccCCCCCcccCCCCCCchhHHHHHHHHHhhCC-CceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCC-CCCCC
Q psy2326 88 INSCPNLEFTDKHGAHPEHAEALVSHVINSCP-NLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNL-NESNV 165 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~-~~~~~ 165 (181)
++++.+ .++| +|++.|||||.+..++ .+..+..|+++++++++|++. ++ +....
T Consensus 190 ---------------------~l~~~i-~~~~~~l~l~Gl~th~g~~~~-~~~~~~~~~~l~~l~~~L~~~-g~~~~~~~ 245 (426)
T 3gwq_A 190 ---------------------AVLEAI-TRYPDTLKLAGVELYEGVLKE-EHEVREFLQSAVAVTRELVEQ-ERFARAPA 245 (426)
T ss_dssp ---------------------HHHHHH-HTSTTTEEEEEEEECGGGCCS-HHHHHHHHHHHHHHHHHHHHH-TCCSSSSE
T ss_pred ---------------------HHHHHH-HcCCCCEEEEeEEEEccccCC-HHHHHHHHHHHHHHHHHHHHc-CCCCCCCC
Confidence 889998 5799 9999999999998765 334678899999999999875 42 22368
Q ss_pred EEeeCCcchHHHHhc
Q psy2326 166 ELSMGMSSDLRERES 180 (181)
Q Consensus 166 ~LSMGMS~D~~~AI~ 180 (181)
.||||||+||+.|++
T Consensus 246 ~lS~G~S~~~~~a~~ 260 (426)
T 3gwq_A 246 VLSGAGSAWYDVVAE 260 (426)
T ss_dssp EEEECCSTTHHHHHH
T ss_pred EEEecCChhHHHHHh
Confidence 999999999999986
No 6
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.70 E-value=1.4e-16 Score=139.82 Aligned_cols=134 Identities=8% Similarity=-0.024 Sum_probs=108.4
Q ss_pred eeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhhhcc
Q psy2326 10 WHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSHVIN 89 (181)
Q Consensus 10 WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~~~~ 89 (181)
.-++|++|.++++.+++ ..++++|||.+.++.|++.+.+.++ +++|+|+||++ .+|+|+.|+++.++
T Consensus 81 il~~~~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~~a~~~~~--~~~V~l~vdtG--~~R~G~~~~e~~~~------ 147 (386)
T 1vfs_A 81 IMCWLWTPGGPWREAIE---TDIDVSVSGMWALDEVRAAARAAGR--TARIQLKADTG--LGRNGCQPADWAEL------ 147 (386)
T ss_dssp EEECCCCTTCCHHHHHH---TTCEEEECSHHHHHHHHHHHHHHTS--CEEEEEEBCSS--CCSSSBCHHHHHHH------
T ss_pred EEEECCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHHHHhcCC--ceEEEEEEcCC--CCCCCCCHhHHHHH------
Confidence 45889999999999987 4678999999999999999988887 89999999998 59999999887511
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCC--ccHHHHHHHHHHHHHHHhcCCCCCCCEE
Q psy2326 90 SCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHG--PNPDFLELAKCRKDVCKKLNLNESNVEL 167 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~--~~~~F~~L~~l~~~l~~~~~~~~~~~~L 167 (181)
.++++.+ .++|+|++.||||+.+...+ .+. .+..|+.+.++++.+++ .|++ ...+
T Consensus 148 ------------------~~~~~~i-~~~~~l~l~Gl~tH~~~~~~-~~~~~~~~~~~~f~~~~~~l~~-~g~~--~~~~ 204 (386)
T 1vfs_A 148 ------------------VGAAVAA-QAEGTVQVTGVWSHFACADE-PGHPSIRLQLDAFRDMLAYAEK-EGVD--PEVR 204 (386)
T ss_dssp ------------------HHHHHHH-HHTTSEEEEEEECCCSSTTS-TTCHHHHHHHHHHHHHHHHHHH-TTCC--CSEE
T ss_pred ------------------HHHHHHH-HhCCCceEEEEEecCCCCCC-CCcHHHHHHHHHHHHHHHHHHh-cCCC--CCeE
Confidence 1558888 57999999999999886543 222 24567788888888875 4654 5689
Q ss_pred eeCCcchHHHHh
Q psy2326 168 SMGMSSDLRERE 179 (181)
Q Consensus 168 SMGMS~D~~~AI 179 (181)
|||||.++..+.
T Consensus 205 ~~g~s~g~~~~~ 216 (386)
T 1vfs_A 205 HIANSPATLTLP 216 (386)
T ss_dssp EEECHHHHHHCG
T ss_pred EecCCHHHHcCc
Confidence 999999998654
No 7
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1.4e-16 Score=139.58 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=107.5
Q ss_pred eeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCc---cchhhhhh
Q psy2326 9 RWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHP---EHAEALVS 85 (181)
Q Consensus 9 ~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p---~~~~~~~~ 85 (181)
...|+|+.|.++++.+++ ..++++|||.+.++.|++.+.+.++ +++|+|+||+| .+|+|+.| +++.
T Consensus 84 ~Il~~g~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~~a~~~~~--~~~V~l~vdtG--~~R~G~~~~~~~~~~---- 152 (384)
T 1xfc_A 84 PVLAWLHPPGIDFGPALL---ADVQVAVSSLRQLDELLHAVRRTGR--TATVTVKVDTG--LNRNGVGPAQFPAML---- 152 (384)
T ss_dssp CEEECCCCTTCCCHHHHH---TTCEEEECSHHHHHHHHHHHHHHCC--CEEEEEEBCSS--CCSSSBCTTTHHHHH----
T ss_pred CEEEEcCCCHHHHHHHHH---cCcEEEECCHHHHHHHHHHHHhcCC--ceEEEEEEECC--CCccCCCcCcHHHHH----
Confidence 467999999999999987 4678999999999999999988887 89999999998 69999999 7777
Q ss_pred hhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCC--ccHHHHHHHHHHHHHHHhcCCCCC
Q psy2326 86 HVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHG--PNPDFLELAKCRKDVCKKLNLNES 163 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~--~~~~F~~L~~l~~~l~~~~~~~~~ 163 (181)
++++.+ .++|+|++.||||+.+...+ .+. .+..|+.+.++.+.+++ .|++
T Consensus 153 -----------------------~~~~~i-~~~~~l~l~Gl~tH~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~g~~-- 204 (384)
T 1xfc_A 153 -----------------------TALRQA-MAEDAVRLRGLMSHMVYADK-PDDSINDVQAQRFTAFLAQARE-QGVR-- 204 (384)
T ss_dssp -----------------------HHHHHH-HHTTSEEEEEEECCC------CCSHHHHHHHHHHHHHHHHHHH-TTCC--
T ss_pred -----------------------HHHHHH-HhCCCCcEEEEEecCCCcCC-CCcHHHHHHHHHHHHHHHHHHh-cCCC--
Confidence 888888 57999999999999886543 222 34567888888888865 4654
Q ss_pred CCEEeeCCcchHHHHh
Q psy2326 164 NVELSMGMSSDLRERE 179 (181)
Q Consensus 164 ~~~LSMGMS~D~~~AI 179 (181)
...+|||||.++..+.
T Consensus 205 ~~~l~~g~s~~~~~~~ 220 (384)
T 1xfc_A 205 FEVAHLSNSSATMARP 220 (384)
T ss_dssp CSEEECBCHHHHHHCG
T ss_pred CCeEEEecCHHHhcCc
Confidence 5689999999998654
No 8
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.65 E-value=6e-16 Score=134.05 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=99.4
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSH 86 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~ 86 (181)
+|- ||+|++|.++++.+++ ..++++|||.+.++.|++ + +.++ +++|+++||+| .+|+|+.|+++.
T Consensus 74 ~Il-~~~g~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~-a-~~~~--~~~V~l~vdtG--~~R~G~~~~~~~----- 138 (357)
T 1rcq_A 74 PIL-LLEGFFEASELELIVA---HDFWCVVHCAWQLEAIER-A-SLAR--PLNVWLKMDSG--MHRVGFFPEDFR----- 138 (357)
T ss_dssp CEE-ETTCCSSGGGHHHHHH---TTEEEEECSHHHHHHHHH-C-CCSS--CEEEEEEBCSS--SCSSSBCHHHHH-----
T ss_pred CEE-EEeCCCCHHHHHHHHH---cCCEEEECCHHHHHHHHh-h-ccCC--CeEEEEEEcCC--CCCCCCCHHHHH-----
Confidence 454 6999999999999987 368999999999999999 6 6665 89999999998 699999999888
Q ss_pred hccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCE
Q psy2326 87 VINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVE 166 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~ 166 (181)
++++.+ .++|+|++.||||+.+...+ .+ .+.+....+.+.++.+.+. . .
T Consensus 139 ----------------------~~~~~i-~~~~~l~l~Gl~th~~~~~~-~~--~~~~~~~~~~f~~~~~~l~----~-~ 187 (357)
T 1rcq_A 139 ----------------------AAHERL-RASGKVAKIVMMSHFSRADE-LD--CPRTEEQLAAFSAASQGLE----G-E 187 (357)
T ss_dssp ----------------------HHHHHH-HHTTCEEEEEEECCCSSTTC-TT--CTHHHHHHHHHHHHHTTCC----S-C
T ss_pred ----------------------HHHHHH-HhCCCCcEEEEEEcccCCCC-CC--cHHHHHHHHHHHHHHhccC----C-C
Confidence 888888 57999999999999876543 21 1334444444445544332 1 2
Q ss_pred EeeCCcchHHHHh
Q psy2326 167 LSMGMSSDLRERE 179 (181)
Q Consensus 167 LSMGMS~D~~~AI 179 (181)
+|||||+++..+.
T Consensus 188 ~s~~ns~~~~~~~ 200 (357)
T 1rcq_A 188 ISLRNSPAVLGWP 200 (357)
T ss_dssp EECCCHHHHHHCT
T ss_pred eEEEeCHHhhcCc
Confidence 9999999987654
No 9
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.62 E-value=1.4e-15 Score=133.84 Aligned_cols=124 Identities=13% Similarity=0.215 Sum_probs=99.6
Q ss_pred eeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhhhccC
Q psy2326 11 HFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSHVINS 90 (181)
Q Consensus 11 HfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~~~~~ 90 (181)
+|+|++|.++++.+++ ..++++|||.+.++.|++ + +.++ +++|+|+||++ .+|.|+.|+++.
T Consensus 97 ~~~g~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~-a-~~~~--~~~V~l~vdtG--m~R~G~~~~e~~--------- 158 (379)
T 2rjg_A 97 LLEGFFDARDLPTISA---QHFHTAVHNEEQLAALEE-A-SLDE--PVTVWMKLDTG--MHRLGVRPEQAE--------- 158 (379)
T ss_dssp ETTCCSCGGGHHHHHH---TTEEEEECSHHHHHHHHH-C-CCSS--CBCEEEEBCSS--CCSSSBCHHHHH---------
T ss_pred EEECCCCHHHHHHHHH---cCcEEEECCHHHHHHHHh-h-CCCC--CeEEEEEECCC--CCccCCCHHHHH---------
Confidence 5999999999999987 478999999999999999 5 5555 89999999998 689999999988
Q ss_pred CCCCcccCCCCCCchhHHHHHHHHHhhCCC-ceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCEEee
Q psy2326 91 CPNLEFTDKHGAHPEHAEALVSHVINSCPN-LEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSM 169 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~-L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~LSM 169 (181)
++++.+ .++|+ |++.||||+.+..++ .+ .+.|....+.+.++.+.+ . .. +||
T Consensus 159 ------------------~~~~~i-~~~~~~l~l~Gl~tH~~~~d~-~~--~~~~~~q~~~f~~~~~~l--~--~~-~s~ 211 (379)
T 2rjg_A 159 ------------------AFYHRL-TQCKNVRQPVNIVSHFARADE-PK--CGATEKQLAIFNTFCEGK--P--GQ-RSI 211 (379)
T ss_dssp ------------------HHHHHH-TTCSSBCSSCEEECCCSSTTC-TT--STHHHHHHHHHHHHHTTC--C--SC-EEC
T ss_pred ------------------HHHHHH-HhCCCcEEEEEEEEECCccCC-CC--cHHHHHHHHHHHHHHhcc--C--CC-eEE
Confidence 888888 67999 999999999886543 21 234555555555555433 2 13 999
Q ss_pred CCcchHHHHh
Q psy2326 170 GMSSDLRERE 179 (181)
Q Consensus 170 GMS~D~~~AI 179 (181)
|||+++..+.
T Consensus 212 gnS~~~~~~~ 221 (379)
T 2rjg_A 212 AASGGILLWP 221 (379)
T ss_dssp CCHHHHHHCG
T ss_pred EECcchhcCc
Confidence 9999998764
No 10
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.62 E-value=2e-15 Score=133.46 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=105.5
Q ss_pred ceeeeeccccc-ccHHhhhcCCCccE-EEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCC-----------CCCccCC
Q psy2326 8 IRWHFIGHLQS-NKVPKVIKVPNLEY-IETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS-----------GEENKHG 74 (181)
Q Consensus 8 i~WHfIG~LQs-NKvk~l~~~~~~~~-I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s-----------~E~~K~G 74 (181)
-+|||+|+.|+ ++++.+++ ..+ +.+|||.+.++.|++.+.+.++ +++|+|+||++ ++.+|+|
T Consensus 86 ~~I~~~g~~k~~~~i~~a~~---~~v~~~~vds~~el~~l~~~a~~~~~--~~~V~lrvn~g~~~~~~~~~~~~~~srfG 160 (428)
T 2j66_A 86 ENIIFSGPGKKRSELEIAVQ---SGIYCIIAESVEELFYIEELAEKENK--TARVAIRINPDKSFGSTAIKMGGVPRQFG 160 (428)
T ss_dssp GGEEECCSCCCHHHHHHHHH---HTCSEEEECSHHHHHHHHHHHHHHTC--CEEEEEEEECSSCC--CCCSSSCCCCSSS
T ss_pred CeEEEeCCCCCHHHHHHHHH---CCCCEEEECCHHHHHHHHHHHHhhCC--CceEEEEEcCCCCCCCCccccCCCCCCCC
Confidence 46999999987 68998886 344 8999999999999999988887 89999999998 5679999
Q ss_pred CCccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeec-CCCCCCCCCCccHHHHHHHHHHHH
Q psy2326 75 AHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTI-GKYGYDTKHGPNPDFLELAKCRKD 153 (181)
Q Consensus 75 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi-~~~~~d~~~~~~~~F~~L~~l~~~ 153 (181)
++++++. ++++.+ .++|+|++.||||+ |+...+ .+..+..|+.+.+++++
T Consensus 161 ~~~~e~~---------------------------~~~~~~-~~~~~l~l~Gl~~H~gs~~~~-~~~~~~~~~~~~~~~~~ 211 (428)
T 2j66_A 161 MDESMLD---------------------------AVMDAV-RSLQFTKFIGIHVYTGTQNLN-TDSIIESMKYTVDLGRN 211 (428)
T ss_dssp EEGGGHH---------------------------HHHHHH-HHCTTEEEEEEECCCCSCBCC-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH---------------------------HHHHHH-HhCCCCCEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHH
Confidence 9999888 888888 57999999999999 554332 22234568888888988
Q ss_pred HHHhcCCCCCCCEEeeCCc
Q psy2326 154 VCKKLNLNESNVELSMGMS 172 (181)
Q Consensus 154 l~~~~~~~~~~~~LSMGMS 172 (181)
+++++|.+ ...||||-+
T Consensus 212 l~~~~g~~--~~~l~~GGG 228 (428)
T 2j66_A 212 IYERYGIV--CECINLGGG 228 (428)
T ss_dssp HHHHHCCC--CSEEECCCC
T ss_pred HHHHhCCC--CCEEEeCCC
Confidence 86666764 678999875
No 11
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.60 E-value=2.3e-15 Score=130.41 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=103.4
Q ss_pred eeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhhhc
Q psy2326 9 RWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSHVI 88 (181)
Q Consensus 9 ~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~~~ 88 (181)
..+++|+.|.++++.+++ ..++.+|||.+.++.|++.+.+ +++|+++||++ .+|+|++|+++.
T Consensus 76 ~il~~~~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~~a~~-----~~~v~l~vdtG--~~R~G~~~~~~~------- 138 (361)
T 2dy3_A 76 EVLCWIWTPEQDFRAAID---RNIDLAVISPAHAKALIETDAE-----HIRVSIKIDSG--LHRSGVDEQEWE------- 138 (361)
T ss_dssp EEEECCCCTTSCHHHHHT---TTCEEEECSHHHHHHHHTSCCS-----CEEEEEEBCCS--SCSSSBCHHHHH-------
T ss_pred CEEEECCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHhCcc-----CCEEEEEEeCC--CCCCCCCHHHHH-------
Confidence 468999999999999986 4578999999999999986543 58999999998 689999999888
Q ss_pred cCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCC-CccHHHHHHHHHHHHHHHhcCCCCCCCEE
Q psy2326 89 NSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKH-GPNPDFLELAKCRKDVCKKLNLNESNVEL 167 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~-~~~~~F~~L~~l~~~l~~~~~~~~~~~~L 167 (181)
++++.+ .++|+|++.|+||+.+...+... ..+..|+.+.++.+.+++ .|++ ...+
T Consensus 139 --------------------~~~~~~-~~~~~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~--~~~~ 194 (361)
T 2dy3_A 139 --------------------GVFSAL-AAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARK-HGLE--CPVN 194 (361)
T ss_dssp --------------------HHHHHH-HTCTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHH-TTCC--CCSC
T ss_pred --------------------HHHHHH-HhCCCCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCC--CCeE
Confidence 888888 57999999999999876543111 135678888888888875 4654 4679
Q ss_pred eeCCcchHHHHh
Q psy2326 168 SMGMSSDLRERE 179 (181)
Q Consensus 168 SMGMS~D~~~AI 179 (181)
|||||.++..+.
T Consensus 195 ~~g~s~~~~~~~ 206 (361)
T 2dy3_A 195 HVCNSPAFLTRS 206 (361)
T ss_dssp BCCCHHHHHHCG
T ss_pred EEeCCHHHhcCc
Confidence 999999987654
No 12
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.58 E-value=1.4e-14 Score=127.78 Aligned_cols=129 Identities=10% Similarity=0.061 Sum_probs=103.1
Q ss_pred eeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCc-cchhhhhhhhc
Q psy2326 10 WHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHP-EHAEALVSHVI 88 (181)
Q Consensus 10 WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p-~~~~~~~~~~~ 88 (181)
..++|+.|.++++.+++ ..++.+|||.+.++.|++.+ +.++ +++|+++||++ .+|+|+.| +++.
T Consensus 82 Il~~g~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~~a-~~~~--~~~V~lkvdtG--m~R~G~~~~~e~~------- 146 (388)
T 1bd0_A 82 ILVLGASRPADAALAAQ---QRIALTVFRSDWLEEASALY-SGPF--PIHFHLKMDTG--MGRLGVKDEEETK------- 146 (388)
T ss_dssp EEECSCCCGGGHHHHHH---TTEEEEECCHHHHHHHHHHC-CCSS--CEEEEEEBCSS--SCSSSBCSHHHHH-------
T ss_pred EEEECCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHHh-ccCC--CeEEEEEEcCC--CCcCCCCCHHHHH-------
Confidence 34779999999999987 46789999999999999988 6666 89999999998 68999997 7877
Q ss_pred cCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCEEe
Q psy2326 89 NSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELS 168 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~LS 168 (181)
++++.+ .++|+|++.|+||+.+...+ .+ .+.|....+.++++++.++++ ...+|
T Consensus 147 --------------------~~~~~i-~~~~~l~l~Gl~tH~~~~~~-~~--~~~~~~q~~~f~~l~~~~g~~--~~~~~ 200 (388)
T 1bd0_A 147 --------------------RIVALI-ERHPHFVLEGLYTHFATADE-VN--TDYFSYQYTRFLHMLEWLPSR--PPLVH 200 (388)
T ss_dssp --------------------HHHHHH-HHSTTEEEEEEECCCSSTTS-SC--CHHHHHHHHHHHHHHTTCSSC--CSEEE
T ss_pred --------------------HHHHHH-HhCCCceEEEEEEccCCCCC-CC--cHHHHHHHHHHHHHHhhcCCC--CCeEE
Confidence 888888 57999999999999876543 22 244555555666676543543 56899
Q ss_pred eCCcchHHHHh
Q psy2326 169 MGMSSDLRERE 179 (181)
Q Consensus 169 MGMS~D~~~AI 179 (181)
||||.++..+.
T Consensus 201 ~g~S~~~~~~~ 211 (388)
T 1bd0_A 201 CANSAASLRFP 211 (388)
T ss_dssp CCCHHHHHHCT
T ss_pred ecCCHHHhcCc
Confidence 99999987653
No 13
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.58 E-value=1.1e-14 Score=128.04 Aligned_cols=127 Identities=7% Similarity=0.077 Sum_probs=102.2
Q ss_pred eeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCc-cchhhhhhhhcc
Q psy2326 11 HFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHP-EHAEALVSHVIN 89 (181)
Q Consensus 11 HfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p-~~~~~~~~~~~~ 89 (181)
-++|+.|.++++.+++ ..++.+|||.+.++.|++ +.+.++ +++|+|+|||+ .+|+|+.| +++.
T Consensus 87 l~~g~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~-a~~~~~--~~~V~lkvdtG--m~R~G~~~~~e~~-------- 150 (391)
T 2vd8_A 87 LVLGPSPPRDINVAAE---NDVALTVFQXEWVDEAIX-LWDGSS--TMXYHINFDSG--MGRIGIRERXELX-------- 150 (391)
T ss_dssp EECSCCCGGGHHHHHH---TTEEEECCCHHHHHHHHH-HCCSSC--CEEEEEEBCSS--CCSSSBCCHHHHH--------
T ss_pred EEecCCChHHHHHHHH---CCeEEEEcCHHHHHHHHH-HHhcCC--ceEEEEEEeCC--CCCCCCCchhhHH--------
Confidence 3679999999999986 467899999999999999 776666 89999999998 68999997 7887
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCC--ccHHHHHHHHHHHHHHHhcCCCCCCCEE
Q psy2326 90 SCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHG--PNPDFLELAKCRKDVCKKLNLNESNVEL 167 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~--~~~~F~~L~~l~~~l~~~~~~~~~~~~L 167 (181)
++++.+ .++|+|++.|+||+.+...+ .+. .+..|+.+.++.+.+++ .|++ ...+
T Consensus 151 -------------------~~~~~i-~~~~~l~l~Gl~tH~~~~d~-~~~~~~~~q~~~f~~~~~~l~~-~g~~--~~~~ 206 (391)
T 2vd8_A 151 -------------------GFLXSL-EGAPFLELEGVYTHFATADE-VETSYFDXQYNTFLEQLSWLXE-FGVD--PXFV 206 (391)
T ss_dssp -------------------HHHHHH-TTCTTEEEEEEECCCSSTTS-SSCHHHHHHHHHHHHHHHHHHH-TTCC--CCSE
T ss_pred -------------------HHHHHH-hhcCCceEEEeeeccccccC-CCcHHHHHHHHHHHHHHHHHHh-ccCC--cceE
Confidence 888888 67999999999999875543 222 23456677777777765 3654 4579
Q ss_pred eeCCcchHHH
Q psy2326 168 SMGMSSDLRE 177 (181)
Q Consensus 168 SMGMS~D~~~ 177 (181)
|||+|.++..
T Consensus 207 ~~gnS~g~~~ 216 (391)
T 2vd8_A 207 HTANSAATLR 216 (391)
T ss_dssp ECCCHHHHTT
T ss_pred EecchhHhhc
Confidence 9999998754
No 14
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.54 E-value=1.2e-14 Score=128.68 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=101.7
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSH 86 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~ 86 (181)
+..++++|++|.++++.+++ ..++++|||.+.++.|++. ++ +++|+|+||+| .+|.|+. +++.
T Consensus 78 ~~~ilvlg~~~~~~~~~~~~---~~i~~~v~s~~~l~~l~~~----~~--~~~v~lkvdtG--m~R~G~~-~e~~----- 140 (374)
T 4ecl_A 78 SSEILILGYTSPSRAKELCK---YELTQTLIDYRYSLLLNKQ----GY--DIKAHIKIDTG--MHRLGFS-TEDK----- 140 (374)
T ss_dssp CSEEEECSCCCGGGHHHHHH---TTCEEEECCHHHHHHHHTT----CC--CEEEEEEEESS--SCSSSEE-SSCH-----
T ss_pred CCCEEEEeCCCHHHHHHHHH---CCCEEEECCHHHHHHHHhc----CC--CccEEEEEcCC--CCcCccC-HHHH-----
Confidence 34678889999999999987 4788999999999999886 55 89999999998 6899999 8877
Q ss_pred hccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCC--CC--CccHHHHHHHHHHHHHHHhcCCCC
Q psy2326 87 VINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDT--KH--GPNPDFLELAKCRKDVCKKLNLNE 162 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~--~~--~~~~~F~~L~~l~~~l~~~~~~~~ 162 (181)
++++.+ .++|+|++.|+||+.+..++. .+ .....++.+.++.+.|++ .|+.
T Consensus 141 ----------------------~~~~~i-~~~~~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~~- 195 (374)
T 4ecl_A 141 ----------------------DKILAA-FSLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKS-SGLN- 195 (374)
T ss_dssp ----------------------HHHHHH-TTCTTEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCC-
T ss_pred ----------------------HHHHHH-HhCCCceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHH-cCCC-
Confidence 888888 679999999999998865431 00 012345566666666764 3554
Q ss_pred CCCEEeeCCcchHHHH
Q psy2326 163 SNVELSMGMSSDLRER 178 (181)
Q Consensus 163 ~~~~LSMGMS~D~~~A 178 (181)
...+|||+|+++...
T Consensus 196 -~~~~~~~nSa~~~~~ 210 (374)
T 4ecl_A 196 -IPKVHIQSSYGLLNY 210 (374)
T ss_dssp -CCEEECCCHHHHHHC
T ss_pred -CCeEEecCCchhhcC
Confidence 578999999998754
No 15
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.54 E-value=1.9e-14 Score=127.47 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=103.8
Q ss_pred ceeeeeccccc-ccHHhhhcCCCccE-EEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCC------------CCccC
Q psy2326 8 IRWHFIGHLQS-NKVPKVIKVPNLEY-IETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSG------------EENKH 73 (181)
Q Consensus 8 i~WHfIG~LQs-NKvk~l~~~~~~~~-I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~------------E~~K~ 73 (181)
.+|||+|+.++ +.++.+++ ..+ +.+|||.+.++.|++.+.+.++ +++|+|+||++. +.+|+
T Consensus 106 ~~I~~~g~~k~~~~i~~a~~---~~i~~~~vds~~el~~l~~~a~~~~~--~~~v~lrvn~g~~~~~~~~~~tG~~~~rf 180 (434)
T 1twi_A 106 KKIVFNGNCKTKEEIIMGIE---ANIRAFNVDSISELILINETAKELGE--TANVAFRINPNVNPKTHPKISTGLKKNKF 180 (434)
T ss_dssp GGEEECCSSCCHHHHHHHHH---TTCSEEEECSHHHHHHHHHHHHHHTC--CEEEEEEEECCCCTTTCHHHHHHHHHSSC
T ss_pred CcEEEECCCCCHHHHHHHHH---CCCCEEEECCHHHHHHHHHHHHhcCC--CCeEEEEECCCCCCCCCcccccCCCCCCc
Confidence 57999999875 67877765 245 7999999999999999988887 899999999874 36899
Q ss_pred CCCccc--hhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeec-CCCCCCCCCCccHHHHHHHHH
Q psy2326 74 GAHPEH--AEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTI-GKYGYDTKHGPNPDFLELAKC 150 (181)
Q Consensus 74 Gv~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi-~~~~~d~~~~~~~~F~~L~~l 150 (181)
|+++++ +. ++++.+ .++|+|++.||||+ |+...+ .+.....|+.+.++
T Consensus 181 G~~~~~~~~~---------------------------~~~~~~-~~~~~l~l~Gl~~H~gs~~~~-~~~~~~~~~~~~~~ 231 (434)
T 1twi_A 181 GLDVESGIAM---------------------------KAIKMA-LEMEYVNVVGVHCHIGSQLTD-ISPFIEETRKVMDF 231 (434)
T ss_dssp SEESTTSHHH---------------------------HHHHHH-HHCSSEEEEEEECCCCSSBCC-SHHHHHHHHHHHHH
T ss_pred cCChhhhHHH---------------------------HHHHHH-HhCCCCCEEEEEEECCCCCCC-HHHHHHHHHHHHHH
Confidence 999988 77 888888 57999999999997 655433 22235678999999
Q ss_pred HHHHHHhcCCCCCCCEEeeCCc
Q psy2326 151 RKDVCKKLNLNESNVELSMGMS 172 (181)
Q Consensus 151 ~~~l~~~~~~~~~~~~LSMGMS 172 (181)
++.+++. |.+ ...||||-+
T Consensus 232 ~~~l~~~-g~~--~~~l~~GGg 250 (434)
T 1twi_A 232 VVELKEE-GIE--IEDVNLGGG 250 (434)
T ss_dssp HHHHHHT-TCC--CSEEECCCC
T ss_pred HHHHHhc-CCC--CCEEEECCC
Confidence 9998874 654 678999876
No 16
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.52 E-value=9.5e-14 Score=121.60 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=97.0
Q ss_pred cccccccHHhhhcC--CCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccc--hhhhhhhhcc
Q psy2326 14 GHLQSNKVPKVIKV--PNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEH--AEALVSHVIN 89 (181)
Q Consensus 14 G~LQsNKvk~l~~~--~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~--~~~~~~~~~~ 89 (181)
|.. .++++.+++. +..+++.+|||.+.++.|++.+.+.++ +++|+|+||+| .+|.|+.|++ +.
T Consensus 90 ~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~--~~~V~l~vdtG--~~R~G~~~~~~~l~-------- 156 (376)
T 3llx_A 90 GIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ--DFSVFIEIDSD--DHRGGIKPSDSKLL-------- 156 (376)
T ss_dssp ECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTC--CCEEEEEBCSS--SSSSCBCTTCTHHH--------
T ss_pred CCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEEECCC--CCCCCCCCchHHHH--------
Confidence 445 7899888721 135789999999999999999998887 99999999999 5899999987 34
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCC------CccHHHHHHHHHHHHHHHhcCCCCC
Q psy2326 90 SCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKH------GPNPDFLELAKCRKDVCKKLNLNES 163 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~------~~~~~F~~L~~l~~~l~~~~~~~~~ 163 (181)
++++.+ +|++.|+||+.+..++... ..+..|+.+.++.+.+++ .|++
T Consensus 157 -------------------~~~~~l-----~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~-- 209 (376)
T 3llx_A 157 -------------------TIAKTL-----GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLET-AGIH-- 209 (376)
T ss_dssp -------------------HHHHHH-----GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCC--
T ss_pred -------------------HHHHHh-----CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--
Confidence 555433 8999999999987765211 023456677777777764 3553
Q ss_pred CCEEeeCCcchHHHHhc
Q psy2326 164 NVELSMGMSSDLRERES 180 (181)
Q Consensus 164 ~~~LSMGMS~D~~~AI~ 180 (181)
...+|||||+++..+.+
T Consensus 210 ~~~vs~g~S~~~~~~~~ 226 (376)
T 3llx_A 210 CAITSVGSTPTAHFGED 226 (376)
T ss_dssp CCEEEECCHHHHHHCSC
T ss_pred CCEEEEcCChhhhhhhh
Confidence 67899999999987643
No 17
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.52 E-value=5.8e-14 Score=124.56 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=103.9
Q ss_pred ceeeeeccc-ccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCC------------CCCccCC
Q psy2326 8 IRWHFIGHL-QSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS------------GEENKHG 74 (181)
Q Consensus 8 i~WHfIG~L-QsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s------------~E~~K~G 74 (181)
-.|+|.|+. +.++++.+++. .+.++ +|||.+.++.|++.+.+.++ +++|+|+||++ ++.+|+|
T Consensus 103 ~~i~~~g~~k~~~~i~~a~~~-gv~~i-~vds~~el~~l~~~a~~~~~--~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG 178 (425)
T 2qgh_A 103 YRIVFSGVGKSAFEIEQALKL-NILFL-NVESFMELKTIETIAQSLGI--KARISIRINPNIDAKTHPYISTGLKENKFG 178 (425)
T ss_dssp GGEEECCTTCCHHHHHHHHHT-TCSEE-EECSHHHHHHHHHHHHHHTC--CEEEEEEBCCCCCCCSCGGGBCCSTTSSSS
T ss_pred hHEEEcCCCCCHHHHHHHHHC-CCCEE-EeCCHHHHHHHHHHHHhcCC--CceEEEEEeCCCCCCCCcccccCCCCCCCc
Confidence 469999986 66999999873 24444 99999999999999988887 89999999986 5689999
Q ss_pred CCccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeec-CCCCCCCCCCccHHHHHHHHHHHH
Q psy2326 75 AHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTI-GKYGYDTKHGPNPDFLELAKCRKD 153 (181)
Q Consensus 75 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi-~~~~~d~~~~~~~~F~~L~~l~~~ 153 (181)
++++++. ++++.+ .++|+|++.||||+ |+...+ .+..+..|+.+.++++.
T Consensus 179 ~~~~e~~---------------------------~l~~~~-~~~~~l~l~Gl~~H~gs~~~~-~~~~~~~~~~~~~~~~~ 229 (425)
T 2qgh_A 179 VGEKEAL---------------------------EMFLWA-KKSAFLEPVSVHFHIGSQLLD-LEPIIEASQKVAKIAKS 229 (425)
T ss_dssp BCHHHHH---------------------------HHHHHH-HHCSSEEEEEEECCCBSSBCC-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH---------------------------HHHHHH-HhCCCccEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHH
Confidence 9999888 888888 57999999999999 544323 22345678888888888
Q ss_pred HHHhcCCCCCCCEEeeCCc
Q psy2326 154 VCKKLNLNESNVELSMGMS 172 (181)
Q Consensus 154 l~~~~~~~~~~~~LSMGMS 172 (181)
+++ .|++ ...||||-.
T Consensus 230 l~~-~g~~--~~~l~~GGG 245 (425)
T 2qgh_A 230 LIA-LGID--LRFFDVGGG 245 (425)
T ss_dssp HHH-TTCC--CCEEECCCC
T ss_pred HHh-cCCC--CCEEEECCC
Confidence 876 4654 678999855
No 18
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.50 E-value=7.4e-14 Score=122.42 Aligned_cols=127 Identities=11% Similarity=0.149 Sum_probs=94.2
Q ss_pred eeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCC-ccchhhhhhhhc
Q psy2326 10 WHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAH-PEHAEALVSHVI 88 (181)
Q Consensus 10 WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~-p~~~~~~~~~~~ 88 (181)
.-++|++|.++++.+++ ..++.+|||.+.++.|++.+. .+ +++|+++|||| .+|+|+. |+++.
T Consensus 83 il~~g~~~~~~~~~~~~---~~i~~~vds~~~l~~l~~~a~-~~---~~~V~l~vdtG--~~R~G~~~~ee~~------- 146 (380)
T 3co8_A 83 ILILGPIDVKYAPIASK---YHFLTTVSSLDWLKSADKILG-KE---KLSVNLAVDTG--MNRIGVRSKKDLK------- 146 (380)
T ss_dssp EEECSCCCGGGHHHHHH---TTCEEEECCHHHHHHHHHHCT-TC---CEEEEEEBCSS--SCSSSBCSHHHHH-------
T ss_pred EEEECCCCHHHHHHHHH---CCCEEEECCHHHHHHHHHhcc-cC---CceEEEEEcCC--CCCCCCCCHHHHH-------
Confidence 44779999999999987 367899999999999999876 43 68999999998 6999999 88888
Q ss_pred cCCCCCcccCCCCCCchhHHHHHHHHHhh-CCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCEE
Q psy2326 89 NSCPNLEFTDKHGAHPEHAEALVSHVINS-CPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVEL 167 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~L 167 (181)
++++.+ .+ +|+|++.||||+.+...+ .+ .+.|....+.+.++.+. .. ....+
T Consensus 147 --------------------~~~~~i-~~~~~~l~l~Gl~tH~~~~~~-~~--~~~~~~q~~~f~~~~~~-~~--~~~~~ 199 (380)
T 3co8_A 147 --------------------DEIEFL-QEHSDHFSYDGIFTHFASSDN-PD--DHYFQRQKNRWYELIDG-LI--MPRYV 199 (380)
T ss_dssp --------------------HHHHHH-HHCTTTEEEEEEECCCC------------CHHHHHHHHHHHTT-SC--CCSEE
T ss_pred --------------------HHHHHH-HhhCCCceEEEEEEcCCCCCC-CC--cHHHHHHHHHHHHHHhc-cC--CCCcE
Confidence 888888 67 999999999999886543 21 12233334444444442 22 24579
Q ss_pred eeCCcchHHHHh
Q psy2326 168 SMGMSSDLRERE 179 (181)
Q Consensus 168 SMGMS~D~~~AI 179 (181)
|||||+++..+.
T Consensus 200 ~~~nS~g~~~~~ 211 (380)
T 3co8_A 200 HVMNSGAAMYHS 211 (380)
T ss_dssp ECBCHHHHHHCG
T ss_pred EEeCCHHHhcCc
Confidence 999999987643
No 19
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.46 E-value=2.2e-13 Score=118.05 Aligned_cols=129 Identities=8% Similarity=0.117 Sum_probs=98.2
Q ss_pred eecccccccHHhhhcCCC--ccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccc--hhhhhhhh
Q psy2326 12 FIGHLQSNKVPKVIKVPN--LEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEH--AEALVSHV 87 (181)
Q Consensus 12 fIG~LQsNKvk~l~~~~~--~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~--~~~~~~~~ 87 (181)
+.|.. .++++.+++... ..++.+|||.+.++.|++.+.+.++ +++|+|+||++ .+|+|+.|++ +.
T Consensus 86 ~~~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~--~~~V~l~vd~g--~~R~G~~~~~~~~~------ 154 (376)
T 3anu_A 86 AYPVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGK--RWLVWLKLDCG--NGRAGVRPTDPAAL------ 154 (376)
T ss_dssp EEECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTC--CEEEEEEECCC----CSSBCTTSHHHH------
T ss_pred ECCCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCC--ceEEEEEECCC--CCcCCCCCCchhHH------
Confidence 56888 899998875110 4678999999999999998877776 89999999999 5899999987 77
Q ss_pred ccCCCCCcccCCCCCCchhHHHHHHHHHhhCC---CceEeeeeecCCCCCCCCCC------ccHHHHHHHHHHHHHHHhc
Q psy2326 88 INSCPNLEFTDKHGAHPEHAEALVSHVINSCP---NLEFTGLMTIGKYGYDTKHG------PNPDFLELAKCRKDVCKKL 158 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p---~L~l~GLMTi~~~~~d~~~~------~~~~F~~L~~l~~~l~~~~ 158 (181)
++++.+ .+ | +|++.|+||+.+..+...+. .+..|+.+.++.+.+++ .
T Consensus 155 ---------------------~l~~~i-~~-~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~ 210 (376)
T 3anu_A 155 ---------------------ELAQAI-AN-DAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQ-A 210 (376)
T ss_dssp ---------------------HHHHHH-HH-SCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred ---------------------HHHHHH-hC-CCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 889988 56 8 99999999998753321111 12356777777777765 3
Q ss_pred CCCCCCCEEeeCCcch-HHH
Q psy2326 159 NLNESNVELSMGMSSD-LRE 177 (181)
Q Consensus 159 ~~~~~~~~LSMGMS~D-~~~ 177 (181)
|++ ...+|||+|.+ +..
T Consensus 211 g~~--~~~vs~Ggs~~~~~~ 228 (376)
T 3anu_A 211 GVP--CPQASIGSTPSCSHP 228 (376)
T ss_dssp TCC--CCEEEECCHHHHHSC
T ss_pred CCC--CCEEEEccCHHHhhh
Confidence 654 57899999998 753
No 20
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.45 E-value=5.3e-13 Score=117.46 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=99.5
Q ss_pred eeeeecc-cccccHHhhhcCCCccE-EEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCC------------CCccCC
Q psy2326 9 RWHFIGH-LQSNKVPKVIKVPNLEY-IETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSG------------EENKHG 74 (181)
Q Consensus 9 ~WHfIG~-LQsNKvk~l~~~~~~~~-I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~------------E~~K~G 74 (181)
+|+|.|+ .|.++++.+++ ..+ +.+|||.+.++.|++.+.+.++ +++|+|+||.+. +.+|+|
T Consensus 103 ~Il~~g~~~~~~~l~~a~~---~~i~~~~vds~~~l~~l~~~a~~~~~--~~~v~lRvn~~~~~~~~~~idtG~~~~R~G 177 (420)
T 2p3e_A 103 RIVYAGVGKTEKELTDAVD---SEILMFNVESRQELDVLNEIAGKLGK--KARIAIRVNPDVDPKTHPYIATGMQKSKFG 177 (420)
T ss_dssp GEEECSSCCCHHHHHHHHH---TTCSEEEECCHHHHHHHHHHHHHHTC--CEEEEEEEEC----------------CCSC
T ss_pred HEEEeCCCCCHHHHHHHHH---cCCCEEEeCCHHHHHHHHHHHHhcCC--CCcEEEEECCCCCCCCCcccccCCCCCCCC
Confidence 6999999 58999999987 245 7999999999999999888877 899988888654 569999
Q ss_pred CCccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHH
Q psy2326 75 AHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDV 154 (181)
Q Consensus 75 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l 154 (181)
++++++. ++++.+ .++|+|++.|+||+-+......+.....|+.+.++.+.+
T Consensus 178 ~~~~e~~---------------------------~~~~~~-~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l 229 (420)
T 2p3e_A 178 VDIREAQ---------------------------KEYEYA-SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESL 229 (420)
T ss_dssp EEGGGHH---------------------------HHHHHH-HTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH---------------------------HHHHHH-HhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999888 888888 579999999999996643321222356788888888888
Q ss_pred HHhcCCCCCCCEEeeCCc
Q psy2326 155 CKKLNLNESNVELSMGMS 172 (181)
Q Consensus 155 ~~~~~~~~~~~~LSMGMS 172 (181)
++. |++ ...+++|-|
T Consensus 230 ~~~-g~~--~~~l~~Ggg 244 (420)
T 2p3e_A 230 TQK-GFD--IKYLDIGGG 244 (420)
T ss_dssp HHT-TCC--CCEEECCCC
T ss_pred Hhc-CCC--CCEEEECCC
Confidence 764 554 568899833
No 21
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.45 E-value=2.4e-13 Score=120.42 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=98.5
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHH-HHHHHhcCCCCCceEEEEEeCCCCCccCCCCc-cchhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQV-NNAWAKHQPDKKLKVFCQINTSGEENKHGAHP-EHAEALV 84 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L-~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p-~~~~~~~ 84 (181)
+..++++|++|.++++.+++ ..++++|||.+.++.| ++.+.+.++ +++|+|+||+| .+|.|+.| +++.
T Consensus 80 ~~~Ilvlg~~~~~~~~~~~~---~~i~~~V~s~~~l~~l~~~~a~~~~~--~~~V~lkvdtG--m~R~G~~~~ee~~--- 149 (371)
T 3e5p_A 80 QDPILILSVVDLAYVPLLIQ---YDLSVTVATQEWLEAALQQLTPESNT--PLRVHLKVDTG--MGRIGFLTPEETK--- 149 (371)
T ss_dssp CSCEEEEEECCGGGHHHHHH---HTCEEEECCHHHHHHHHHHHCSCCSC--CBCEEEEBCSS--SCSSSBCSSHHHH---
T ss_pred CCCEEEEcCCCHHHHHHHHH---CCCEEEECCHHHHHHHHHHHHHHcCC--ceEEEEEECCC--CCcCCCCCHHHHH---
Confidence 34688999999999999886 4789999999999999 999888777 89999999998 68999999 8888
Q ss_pred hhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q psy2326 85 SHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESN 164 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~ 164 (181)
++++.+ .++|+|++.|+||+.+..++ .+ .+.+.+-.+.++++.+.+ ....
T Consensus 150 ------------------------~~~~~i-~~~~~l~l~Gl~tH~a~ad~-~~--~~~~~~Q~~~F~~~~~~l--~~~~ 199 (371)
T 3e5p_A 150 ------------------------QAVRFV-QSHKEFLWEGIFTHFSTADE-ID--TSYFEKQAGRFKAVLAVL--EELP 199 (371)
T ss_dssp ------------------------HHHHHH-HHSTTBCCCEEECCCSCTTS-SC--CHHHHHHHHHHHTTSSSC--SCCC
T ss_pred ------------------------HHHHHH-HhCCCccEEEEEEEcCCCCC-CC--cHHHHHHHHHHHHHHHHh--hhcC
Confidence 888888 57999999999999986544 21 233322222333333322 1113
Q ss_pred CEEeeCCcchH
Q psy2326 165 VELSMGMSSDL 175 (181)
Q Consensus 165 ~~LSMGMS~D~ 175 (181)
..+|++.|..+
T Consensus 200 ~~~h~~NSa~~ 210 (371)
T 3e5p_A 200 RYVHVSNSATA 210 (371)
T ss_dssp SEEECBCHHHH
T ss_pred CeEEEecChhH
Confidence 56899888754
No 22
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.45 E-value=2.3e-13 Score=120.97 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=97.9
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSH 86 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~ 86 (181)
+..++++|++|.++++.+++ ..++++|||.+.++.|++++.+.++ +++|+|+|||| .+|.|+.|+++.
T Consensus 92 ~~~ilvl~~~~~~~~~~~~~---~~i~~~V~s~~~l~~l~~~a~~~~~--~~~V~lkVdtG--m~R~G~~~~e~~----- 159 (376)
T 3kw3_A 92 NVMIALLNGFPHKAEEFVAQ---SGIIPLLNSWSTIEDWQTLCQKKNK--KFPAIIQVDTN--MSRLGLDKKELQ----- 159 (376)
T ss_dssp SCEEEETTCCCTTCHHHHHH---TTCEEEECSHHHHHHHHHHHHHHTC--CCEEEEEBCSS--CCSSSBCHHHHH-----
T ss_pred CCCEEEEeCCCHHHHHHHHH---CCCEEEECCHHHHHHHHHHHHHcCC--CeEEEEEECCC--CCcccCCHHHHH-----
Confidence 45789999999999998876 4789999999999999999998887 99999999998 689999999888
Q ss_pred hccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCE
Q psy2326 87 VINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVE 166 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~ 166 (181)
++++.+ .++|+|++.|+||+.+..++ .+ .+.+.+=.+.++++.+.+. ...
T Consensus 160 ----------------------~l~~~i-~~~~~l~l~Gl~tH~a~ad~-~~--~~~~~~Q~~~F~~~~~~l~---~~~- 209 (376)
T 3kw3_A 160 ----------------------KLIKNP-TIFEKAEIKYILSHLANGED-AS--HSSNNKQLAAFKRVLAQLP---TCK- 209 (376)
T ss_dssp ----------------------HHHHCC-THHHHSEEEEEECCCSSTTC-TT--CHHHHHHHHHHHHHHTTSC---CCC-
T ss_pred ----------------------HHHHHH-HhCCCCcEEEEEEECCCCCC-CC--cHHHHHHHHHHHHHHhhcc---CCC-
Confidence 888887 56899999999999886544 21 2223322233344444332 122
Q ss_pred EeeCCcchH
Q psy2326 167 LSMGMSSDL 175 (181)
Q Consensus 167 LSMGMS~D~ 175 (181)
.|++.|.-.
T Consensus 210 ~h~aNSa~~ 218 (376)
T 3kw3_A 210 VSFANSGGI 218 (376)
T ss_dssp EECCCHHHH
T ss_pred EEEEeChhh
Confidence 788888643
No 23
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.44 E-value=8.3e-13 Score=116.80 Aligned_cols=127 Identities=10% Similarity=0.061 Sum_probs=96.1
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCc-cchhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHP-EHAEALVS 85 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p-~~~~~~~~ 85 (181)
+..++++|++|.++++.+++ ..++++|||.+.++.|++.+.+. + +++|+|+|||| .+|.|+.| +++.
T Consensus 79 ~~~ilvlg~~~~~~~~~~~~---~~l~~~V~s~~~l~~l~~~a~~~-~--~~~V~lkvdtG--m~R~G~~~~ee~~---- 146 (367)
T 3mub_A 79 SKPILILGVSEIEAVALAKE---YDFTLTVAGLEWIQALLDKEVDL-T--GLTVHLKIDSG--MGRIGFREASEVE---- 146 (367)
T ss_dssp CSCEEEEEECCGGGHHHHHH---TTEEEEECCHHHHHHHHHTTCCC-T--TCEEEEEECSS--CCSSSBCSHHHHH----
T ss_pred CCCEEEEcCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHHHHhc-C--CeeEEEEECCC--CCcCCCCcHHHHH----
Confidence 44688999999999999986 47899999999999999988766 5 89999999998 68999999 8888
Q ss_pred hhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCC
Q psy2326 86 HVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNV 165 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~ 165 (181)
++++.+ .+ |+|++.|+||+.+..++ .+ .+.+.+=.+.++++.+.+.. ...
T Consensus 147 -----------------------~~~~~i-~~-~~l~l~Gl~tH~a~ad~-~~--~~~~~~Q~~~F~~~~~~l~~--~~~ 196 (367)
T 3mub_A 147 -----------------------QAQDLL-QQ-HGVCVEGIFTHFATADE-ES--DDYFNAQLERFKTILASMKE--VPE 196 (367)
T ss_dssp -----------------------HHHHHH-HH-TTCEEEEEEECCSSTTS-SC--CHHHHHHHHHHHHHHHTCSS--CCS
T ss_pred -----------------------HHHHHH-cc-CCcEEEEEEEEccCCCC-CC--CHHHHHHHHHHHHHHHHhhh--cCC
Confidence 888888 57 99999999999986544 21 22222222233344433321 135
Q ss_pred EEeeCCcchH
Q psy2326 166 ELSMGMSSDL 175 (181)
Q Consensus 166 ~LSMGMS~D~ 175 (181)
..|++.|.-.
T Consensus 197 ~~h~~NSa~~ 206 (367)
T 3mub_A 197 LVHASNSATT 206 (367)
T ss_dssp EEEEECHHHH
T ss_pred eEEEecChHH
Confidence 6888888654
No 24
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.42 E-value=3.6e-13 Score=121.32 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=102.8
Q ss_pred ceeeeeccccc-ccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCC------------CCCccCC
Q psy2326 8 IRWHFIGHLQS-NKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS------------GEENKHG 74 (181)
Q Consensus 8 i~WHfIG~LQs-NKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s------------~E~~K~G 74 (181)
-+|||.|+.|+ ++++.+++. ++. ..+|||.+.++.|++.+.+.++ +++|+|+||++ ++.+|+|
T Consensus 111 ~~I~~~g~~k~~~~i~~a~~~-gv~-~i~vds~~el~~l~~~a~~~~~--~~~v~lrvn~g~~~~~~~~~~~~~~~srfG 186 (467)
T 2o0t_A 111 ERITLHGNNKSVSELTAAVKA-GVG-HIVVDSMTEIERLDAIAGEAGI--VQDVLVRLTVGVEAHTHEFISTAHEDQKFG 186 (467)
T ss_dssp GGEEECCTTCCHHHHHHHHHH-TCS-EEEECSHHHHHHHHHHHHHHTC--CEEEEEEEECSEEEEETEEEEESSCCSSSS
T ss_pred ccEEEeCCCCCHHHHHHHHHC-CCC-EEEECCHHHHHHHHHHHHhhCC--CCeEEEEEcCCCCCCCCcccccCCCCCCcC
Confidence 57999999987 889998862 244 4599999999999999988877 89999999985 6689999
Q ss_pred CCc--cchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeec-CCCCCCCCCCccHHHHHHHHHH
Q psy2326 75 AHP--EHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTI-GKYGYDTKHGPNPDFLELAKCR 151 (181)
Q Consensus 75 v~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi-~~~~~d~~~~~~~~F~~L~~l~ 151 (181)
+++ +++. ++++.+ .++|+|++.|||++ |+...+ .+..+..|+.+.++.
T Consensus 187 ~~~~~~e~~---------------------------~~~~~~-~~~~~l~l~Gl~~H~gs~~~~-~~~~~~~~~~~~~~~ 237 (467)
T 2o0t_A 187 LSVASGAAM---------------------------AAVRRV-FATDHLRLVGLHSHIGSQIFD-VDGFELAAHRVIGLL 237 (467)
T ss_dssp EETTTTHHH---------------------------HHHHHH-HHCSSEEEEEEECCCEEEECC-SHHHHHHHHHHHHHH
T ss_pred CcCCHHHHH---------------------------HHHHHH-HhCCCCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHHH
Confidence 987 4666 788887 57999999999999 544333 223456788899999
Q ss_pred HHHHHhcC----CCCCCCEEeeCC
Q psy2326 152 KDVCKKLN----LNESNVELSMGM 171 (181)
Q Consensus 152 ~~l~~~~~----~~~~~~~LSMGM 171 (181)
+++++++| .+ +..|+||-
T Consensus 238 ~~l~~~~G~~~~~~--~~~ln~GG 259 (467)
T 2o0t_A 238 RDVVGEFGPEKTAQ--IATVDLGG 259 (467)
T ss_dssp HHHHHHHHHHHSTT--CCEEECCC
T ss_pred HHHHHHcCCCcccC--CCEEEeCC
Confidence 88875666 54 67899874
No 25
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.38 E-value=7.5e-13 Score=117.89 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=93.2
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccc-hhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEH-AEALVS 85 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~-~~~~~~ 85 (181)
+..++++|++|.++++.+++ ..++++|||.+.++.|++.+.+.++ ++++|+|+|||| .+|.|+.|++ +.
T Consensus 79 ~~~ilvlg~~~~~~~~~~~~---~~i~~~V~s~~~l~~l~~~a~~~~~-~~~~V~lkvDtG--m~R~G~~~~e~~~---- 148 (382)
T 4a3q_A 79 TAKILVLGVLPAKDIDKAIQ---HRVALTVPSKQWLKEAIKNISGEQE-KKLWLHIKLDTG--MGRLGIKDTNTYQ---- 148 (382)
T ss_dssp CSEEEECSCCCGGGHHHHHH---TTCBEEECCHHHHHHHHHTCCTTCC-SCEEEEEEBCSS--SSSSSBCCHHHHH----
T ss_pred CCCEEEEeCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHHHHHcCC-CceeEEEEECCC--CCcCCCChHHHHH----
Confidence 45688889999999999986 4678999999999999998876552 169999999998 6899999986 77
Q ss_pred hhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCC
Q psy2326 86 HVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNV 165 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~ 165 (181)
++++.+ .++|+|++.|+||+.+..++ .+. +...++..+ +++.+.+ . ...
T Consensus 149 -----------------------~~~~~i-~~~~~l~l~Gl~tH~a~ad~-~~~--~~~~Q~~~F-~~~~~~l-~--~~~ 197 (382)
T 4a3q_A 149 -----------------------EVIEII-QQYEQLVFEGVFTHFACADE-PGD--MTTEQYQRF-KDMVNEA-I--KPE 197 (382)
T ss_dssp -----------------------HHHHHH-HHCTTEEEEEEECCC--------C--HHHHHHHHH-HHHHTTS-C--CCS
T ss_pred -----------------------HHHHHH-HhCCCceEEEEEEECcCCCC-CCc--hHHHHHHHH-HHHHHhh-C--CCC
Confidence 888888 57999999999999886554 211 222333333 3333333 1 245
Q ss_pred EEeeCCcchH
Q psy2326 166 ELSMGMSSDL 175 (181)
Q Consensus 166 ~LSMGMS~D~ 175 (181)
..|++.|...
T Consensus 198 ~~h~aNSa~~ 207 (382)
T 4a3q_A 198 YIHCQNSAGS 207 (382)
T ss_dssp EEECCCHHHH
T ss_pred cEEEEcChhh
Confidence 7899888754
No 26
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.24 E-value=1.2e-11 Score=110.96 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=78.8
Q ss_pred CceeeeecccccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccc-hhhhhh
Q psy2326 7 DIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEH-AEALVS 85 (181)
Q Consensus 7 di~WHfIG~LQsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~-~~~~~~ 85 (181)
+..++++|++|.++++.+++ ..++++|||.+.++.|+++ . + +++|+|+|||| .+|.|+.|++ +.
T Consensus 81 ~~~Ilvlg~~~~~~~~~~~~---~~l~~~V~s~~~l~~l~~~-~--~---~~~V~lkvDtG--m~R~G~~~~e~~~---- 145 (395)
T 3hur_A 81 TLPIWVLGAWDYSDLKLFID---HDIVITIPSLAWLQNLPDF-E--G---TLKVSLAIDTG--MTRIGFDKADEIS---- 145 (395)
T ss_dssp CSCEEESSCCCGGGHHHHHH---TTEEEEECCHHHHHTCCCC-S--S---CEEEEEEBCCS--SCSSSBCCHHHHH----
T ss_pred CCCEEEEcCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHh-c--C---CCcEEEEEcCC--CCCcCCChHHHHH----
Confidence 45689999999999999986 5889999999999999876 3 2 79999999998 7999999987 77
Q ss_pred hhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCC
Q psy2326 86 HVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYD 135 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d 135 (181)
++++.+ .++|+|++.|+||+.+..++
T Consensus 146 -----------------------~~~~~i-~~~~~l~l~Gl~TH~a~ad~ 171 (395)
T 3hur_A 146 -----------------------AAKKII-DKNPQLDLFSVYTHFATADE 171 (395)
T ss_dssp -----------------------HHHHHH-HHCTTEEEEEEECCCTTTTS
T ss_pred -----------------------HHHHHH-HhCCCceEEEEEEeCcCCCC
Confidence 888888 57999999999999986544
No 27
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.08 E-value=6.1e-10 Score=100.18 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=98.2
Q ss_pred eeeeccc-ccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCC------------CCCccCCCC
Q psy2326 10 WHFIGHL-QSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS------------GEENKHGAH 76 (181)
Q Consensus 10 WHfIG~L-QsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s------------~E~~K~Gv~ 76 (181)
-.|-|+. +...++.+++. .+. +.+|||...++.|++.+.+.++ +.+|+|+||++ .+.+|+|++
T Consensus 121 I~~~g~~k~~~ei~~a~~~-gv~-~~~vds~~el~~l~~~a~~~~~--~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~ 196 (443)
T 3vab_A 121 IVFSGVGKTPREMDFALEA-GIY-CFNVESEPELEILSARAVAAGK--VAPVSLRINPDVDAKTHAKISTGKSENKFGIP 196 (443)
T ss_dssp EEEECTTCCHHHHHHHHHH-TCS-EEEECCHHHHHHHHHHHHHHTC--CEEEEEEEECCBCTTTCCBC---CCCCSSSEE
T ss_pred EEEcCCCCCHHHHHHHHHC-CCC-EEEECCHHHHHHHHHHHHhcCC--CceEEEEECCCCCCCCCcccccCCCCCCCcCC
Confidence 4677874 45567777652 333 4799999999999999998887 89999999964 567999999
Q ss_pred ccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCC-CCCCCCccHHHHHHHHHHHHHH
Q psy2326 77 PEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYG-YDTKHGPNPDFLELAKCRKDVC 155 (181)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~-~d~~~~~~~~F~~L~~l~~~l~ 155 (181)
++++. ++++.+ .++|+|++.|||++-+-. .+ .+..+..|+.+.++.++++
T Consensus 197 ~~e~~---------------------------~ll~~~-~~~~~l~l~Glh~H~gs~~~d-~~~~~~a~~~~~~l~~~l~ 247 (443)
T 3vab_A 197 RDKAR---------------------------AAYARA-ASLPGLNVVGIDMHIGSQIID-LEPFDNAFALMAELVKELQ 247 (443)
T ss_dssp GGGHH---------------------------HHHHHH-HHSTTEEEEEEECCCCSSBCC-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------------------------HHHHHH-hhCCCceEEEEEEeccCCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 99988 788887 579999999999985432 23 2234677888999999887
Q ss_pred HhcCCCCCCCEEeeCC
Q psy2326 156 KKLNLNESNVELSMGM 171 (181)
Q Consensus 156 ~~~~~~~~~~~LSMGM 171 (181)
+ .|.+ +..|+||-
T Consensus 248 ~-~G~~--l~~ldiGG 260 (443)
T 3vab_A 248 A-DGHN--IRHVDVGG 260 (443)
T ss_dssp H-TTCC--CCEEECCC
T ss_pred H-cCCC--CCEEEeCC
Confidence 6 4654 78999874
No 28
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.06 E-value=6.7e-10 Score=99.85 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=97.3
Q ss_pred eeeeccc-ccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCC------------CCCccCCCC
Q psy2326 10 WHFIGHL-QSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTS------------GEENKHGAH 76 (181)
Q Consensus 10 WHfIG~L-QsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s------------~E~~K~Gv~ 76 (181)
-.|-|+. +...++.+++. .+. +.+|||...++.|++.+.+.++ +.+|+|+||++ ++.+|+|++
T Consensus 124 I~~~g~~k~~~ei~~a~~~-gv~-~~~vds~~el~~l~~~a~~~~~--~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~ 199 (441)
T 3n2b_A 124 VVFSGVGKTEAEMKRALQL-KIK-CFNVESEPELQRLNKVAGELGV--KAPISLRINPDVDAKTHPYISTGLRDNKFGIT 199 (441)
T ss_dssp EEECCTTCCHHHHHHHHHT-TCS-EEEECSHHHHHHHHHHHHHHTC--CEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBC
T ss_pred EEEcCCCCCHHHHHHHHHC-CCC-EEEEcCHHHHHHHHHHHHhcCC--CcEEEEEeccCCCcCCCcccccCCCCCcccCC
Confidence 4667764 45567777762 333 4699999999999999988887 89999999976 246899999
Q ss_pred ccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHH
Q psy2326 77 PEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCK 156 (181)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~ 156 (181)
++++. ++++.+ .++|+|++.|||++-+-.....+..+..|+++.++++++++
T Consensus 200 ~~~~~---------------------------~~~~~~-~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~ 251 (441)
T 3n2b_A 200 FDRAA---------------------------QVYRLA-HSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKA 251 (441)
T ss_dssp GGGHH---------------------------HHHHHH-HHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------------------------HHHHHH-hcCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99988 788887 57999999999998653321122345678889999988875
Q ss_pred hcCCCCCCCEEeeCC
Q psy2326 157 KLNLNESNVELSMGM 171 (181)
Q Consensus 157 ~~~~~~~~~~LSMGM 171 (181)
.|.+ +..|+||-
T Consensus 252 -~G~~--l~~LdiGG 263 (441)
T 3n2b_A 252 -EGIH--IRHLDVGG 263 (441)
T ss_dssp -TTCC--CCEEECCS
T ss_pred -cCCC--CCEEEECC
Confidence 4654 78999984
No 29
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=98.78 E-value=3.6e-08 Score=85.49 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=90.9
Q ss_pred eeeeeccccc-ccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------CccCCCCccchh
Q psy2326 9 RWHFIGHLQS-NKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE------ENKHGAHPEHAE 81 (181)
Q Consensus 9 ~WHfIG~LQs-NKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E------~~K~Gv~p~~~~ 81 (181)
+++|.|+.++ ..++.+++. .+.+ -+|||.+-++.|++.+. .++|++.||++.+ .+|.|++++++.
T Consensus 86 ~I~~~~~~k~~~~l~~a~~~-~v~~-~~vds~~~l~~l~~~~~------~~~v~lrv~~~~~~~~~~~~~R~G~~~~~~~ 157 (372)
T 2nva_A 86 RIIFAHTMKTIDDLIFAKDQ-GVDI-ATFDSSFELDKIHTYHP------NCKMILRIRCDDPNATVQLGNKFGANEDEIR 157 (372)
T ss_dssp GEEECCSCCCHHHHHHHHHH-TCCE-EEECSHHHHHHHHHHCT------TCEEEEEBCCCCTTCSBCCTTTSSBCGGGHH
T ss_pred HEEECCCCCCHHHHHHHHHC-CCCE-EEeCCHHHHHHHHHhCC------CCeEEEEEecCCCCCcccCCCCCCCCHHHHH
Confidence 5899999865 778887752 3443 59999999999987643 4789999999853 389999999888
Q ss_pred hhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCC
Q psy2326 82 ALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLN 161 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~ 161 (181)
++++.+ .+. +|++.|+||+-+......+.....++.+.++++.+++ .|++
T Consensus 158 ---------------------------~~~~~~-~~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~ 207 (372)
T 2nva_A 158 ---------------------------HLLEYA-KQL-DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAIS-VGHK 207 (372)
T ss_dssp ---------------------------HHHHHH-HHT-TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHH-HTCC
T ss_pred ---------------------------HHHHHH-HHc-CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 788887 456 9999999999543322111123456777777888875 4664
Q ss_pred CCCCEEeeCCc
Q psy2326 162 ESNVELSMGMS 172 (181)
Q Consensus 162 ~~~~~LSMGMS 172 (181)
...+++|-+
T Consensus 208 --~~~~~~GGg 216 (372)
T 2nva_A 208 --PYILDIGGG 216 (372)
T ss_dssp --CCEEECCSC
T ss_pred --CcEEEeCCC
Confidence 568888865
No 30
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=98.61 E-value=1.1e-07 Score=84.66 Aligned_cols=125 Identities=10% Similarity=0.118 Sum_probs=87.5
Q ss_pred eeeeeccccc-ccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------CccCCCCccchh
Q psy2326 9 RWHFIGHLQS-NKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE------ENKHGAHPEHAE 81 (181)
Q Consensus 9 ~WHfIG~LQs-NKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E------~~K~Gv~p~~~~ 81 (181)
+++|.|+.++ ..++.+++. .+. ..+|||..-++.|++.+. .++|+|.||++.+ .+|.|++++++.
T Consensus 124 ~Il~~g~~k~~~~l~~a~~~-~v~-~~~vds~~el~~l~~~a~------~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~ 195 (419)
T 2plj_A 124 LTIHTHPIKRDADIRDALAY-GCN-VFVVDNLNELEKFKAYRD------DVELLVRLSFRNSEAFADLSKKFGCSPEQAL 195 (419)
T ss_dssp GEEECCSSCCHHHHHHHHHH-TCC-EEEECSHHHHHTTGGGTT------TCEEEEEBCC---------CCCSCBCHHHHH
T ss_pred hEEEeCCCCCHHHHHHHHHC-CCC-EEEeCCHHHHHHHHHhcC------CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHH
Confidence 5889998754 678877752 243 389999999998886542 4799999999865 689999998888
Q ss_pred hhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCC
Q psy2326 82 ALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLN 161 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~ 161 (181)
++++.+ .+. +|++.|+||+-+......+.....++.+.++++.+++ .|++
T Consensus 196 ---------------------------~~~~~~-~~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~G~~ 245 (419)
T 2plj_A 196 ---------------------------VIIETA-KEW-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVE-RGLP 245 (419)
T ss_dssp ---------------------------HHHHHH-HHT-TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred ---------------------------HHHHHH-HhC-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 788887 456 9999999997554322111223456667777777764 4661
Q ss_pred CCCCEEeeCCc
Q psy2326 162 ESNVELSMGMS 172 (181)
Q Consensus 162 ~~~~~LSMGMS 172 (181)
....+++|-+
T Consensus 246 -~~~~l~~GGG 255 (419)
T 2plj_A 246 -ALSTLDIGGG 255 (419)
T ss_dssp -CCCEEECCCC
T ss_pred -CCCEEEECCC
Confidence 2567887654
No 31
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=98.41 E-value=1e-06 Score=83.73 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=83.5
Q ss_pred ccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeC-----------CCCCccCCCCccchhhhhhhhccCCCCCcccC
Q psy2326 30 LEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT-----------SGEENKHGAHPEHAEALVSHVINSCPNLEFTD 98 (181)
Q Consensus 30 ~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~-----------s~E~~K~Gv~p~~~~~~~~~~~~~~~~~~~~~ 98 (181)
..++-+|||..-++.|++.+.+.++ +.+|+|.||. +++.+|+|++++++.
T Consensus 174 ~~v~IvVDS~~EL~~I~~~A~~~g~--~~~V~LRInp~~~~~~~~i~TGg~~SKFGi~~~e~~----------------- 234 (648)
T 3n2o_A 174 HKVFIVLEKMSELDLVLREAKSLGV--TPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVL----------------- 234 (648)
T ss_dssp CEEEEEECSTHHHHHHHHHHHHHTC--CCEEEEEBCCSTTSTTTTCSSSSCCCCCCBCHHHHH-----------------
T ss_pred CCEEEEECCHHHHHHHHHHHHhcCC--CcEEEEEEECCCCCCCCccccCCCCCcCcCCHHHHH-----------------
Confidence 4567899999999999999998887 8999999984 567799999999888
Q ss_pred CCCCCchhHHHHHHHHHhhCCCce-EeeeeecCCCC-CCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCEEeeC
Q psy2326 99 KHGAHPEHAEALVSHVINSCPNLE-FTGLMTIGKYG-YDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMG 170 (181)
Q Consensus 99 ~~~~~~~~~~~l~~~i~~~~p~L~-l~GLMTi~~~~-~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~LSMG 170 (181)
++++.+ .++++|+ +.||+++-+.. .+ .+.....++++.++++++++ .|.+ +..|++|
T Consensus 235 ----------~ll~~l-~~~~~L~~l~GLHfHiGSqi~d-~~~~~~al~~~~~l~~~L~~-~G~~--l~~LDiG 293 (648)
T 3n2o_A 235 ----------NVISRL-KKENQLDTLQLVHFHLGSQMAN-IRDVRNGVNESARFYCELRT-LGAN--ITYFDVG 293 (648)
T ss_dssp ----------HHHHHH-HHTTCGGGEEEEECCCCSSBCC-HHHHHHHHHHHHHHHHHHHH-TTCC--CCEEECC
T ss_pred ----------HHHHHH-HhCCCCCceEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHh-cCCC--CcEEEeC
Confidence 888887 5789997 99999875422 22 22234566777778888864 5664 7888887
No 32
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=98.41 E-value=1.2e-06 Score=83.36 Aligned_cols=108 Identities=15% Similarity=0.070 Sum_probs=83.1
Q ss_pred ccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeC-----------CCCCccCCCCccchhhhhhhhccCCCCCcccC
Q psy2326 30 LEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT-----------SGEENKHGAHPEHAEALVSHVINSCPNLEFTD 98 (181)
Q Consensus 30 ~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~-----------s~E~~K~Gv~p~~~~~~~~~~~~~~~~~~~~~ 98 (181)
..++-+|||..-++.|++.+.+.++ +.+|+|.||. +++.+|+|++++++.
T Consensus 191 ~~v~ivVDS~~ELe~L~~~A~~~g~--~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~e~~----------------- 251 (666)
T 3nzq_A 191 HKVYLVIEKMSEIAIVLDEAERLNV--VPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVL----------------- 251 (666)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHTTC--CCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHHHH-----------------
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC--CceEEEEEEecCCCCcCccccCCCCCcCcCCHHHHH-----------------
Confidence 4567899999999999999998887 8899999964 457799999999888
Q ss_pred CCCCCchhHHHHHHHHHhhCCCce-EeeeeecCCCC-CCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCEEeeCC
Q psy2326 99 KHGAHPEHAEALVSHVINSCPNLE-FTGLMTIGKYG-YDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGM 171 (181)
Q Consensus 99 ~~~~~~~~~~~l~~~i~~~~p~L~-l~GLMTi~~~~-~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~LSMGM 171 (181)
++++.+ .++++|+ +.||+++-+.. .+ .+.....++++.+++++++ +.|.+ +..|++|-
T Consensus 252 ----------~ll~~l-~~~~~L~~l~GLHfHiGSqi~d-~~~~~~ai~~~~~l~~~L~-~~G~~--l~~LDiGG 311 (666)
T 3nzq_A 252 ----------QLVETL-REAGRLDSLQLLHFHLGSQMAN-IRDIATGVRESARFYVELH-KLGVN--IQCFDVGG 311 (666)
T ss_dssp ----------HHHHHH-HHTTCTTTEEEEECCCCSSCCC-HHHHHHHHHHHHHHHHHHH-TTTCC--CCEEECCS
T ss_pred ----------HHHHHH-HhCCCCCCeEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHH-hcCCC--CCEEEeCC
Confidence 888887 5799997 99999975432 22 1223455677777777876 45654 77888764
No 33
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=98.36 E-value=1.7e-06 Score=81.78 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=79.8
Q ss_pred ccEEEEeccHHHHHHHHHHHHhcC-CCCCceEEEEEeC-----------CCCCccCCCCccchhhhhhhhccCCCCCccc
Q psy2326 30 LEYIETIHDTRLATQVNNAWAKHQ-PDKKLKVFCQINT-----------SGEENKHGAHPEHAEALVSHVINSCPNLEFT 97 (181)
Q Consensus 30 ~~~I~sVDs~~lA~~L~~~~~~~~-~~~~l~VliQVN~-----------s~E~~K~Gv~p~~~~~~~~~~~~~~~~~~~~ 97 (181)
..++-+|||..-++.|++.+++.+ + +.+|.|.||. +++.+|+|++++++.
T Consensus 151 ~~v~ivVDS~~ELe~l~~~a~~~g~~--~~~V~LRInp~~~g~~~~~~TGg~~sKFGi~~ee~~---------------- 212 (619)
T 3nzp_A 151 HNITLTIEGLNELEAIIDIAKERFKP--KPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELI---------------- 212 (619)
T ss_dssp CEEEEEESSHHHHHHHHHHHTTSCSC--CCEEEEEBCCTTC-------------CCSBCHHHHH----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCC--CCEEEEEEecCCCCCcccccCCCCCccCcCCHHHHH----------------
Confidence 356789999999999999998887 6 8999999985 456789999999888
Q ss_pred CCCCCCchhHHHHHHHHHhhCCCc-eEeeeeecCCCC-CCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCEEeeC
Q psy2326 98 DKHGAHPEHAEALVSHVINSCPNL-EFTGLMTIGKYG-YDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMG 170 (181)
Q Consensus 98 ~~~~~~~~~~~~l~~~i~~~~p~L-~l~GLMTi~~~~-~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~~~LSMG 170 (181)
++++.+ .++++| ++.||+++-+.. .+ .+.....++++.++++++++ .|++ .+..|.+|
T Consensus 213 -----------~ll~~l-~~~~~L~~l~GLHfHiGSqi~d-~~~~~~al~~~~~l~~~L~~-~G~~-~l~~LDiG 272 (619)
T 3nzp_A 213 -----------EAVNLL-KENKLLEQFTMIHFHLGSQITE-IHPLKKALNEAGNIYTELRK-MGAK-NLKAINLG 272 (619)
T ss_dssp -----------HHHHHH-HHTTCTTTEEEEECCCCSCBCC-SHHHHHHHHHHHHHHHHHHH-TTCT-TCCEEEEE
T ss_pred -----------HHHHHH-HhCCCCCceeEEEEEeCCCCCC-HHHHHHHHHHHHHHHHHHHH-hcCC-CCCEEEeC
Confidence 888887 578999 599999975432 23 22335567788888888875 5661 26778776
No 34
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=98.36 E-value=2.4e-06 Score=76.21 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=81.4
Q ss_pred eeeeecccccc-cHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCC------CCccCCCCccchh
Q psy2326 9 RWHFIGHLQSN-KVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSG------EENKHGAHPEHAE 81 (181)
Q Consensus 9 ~WHfIG~LQsN-Kvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~------E~~K~Gv~p~~~~ 81 (181)
+-.|-|+.++. .++.+++. .+.. -+|||..-++.|++.+. ..+|+|.||++. ..+|+|++++++.
T Consensus 107 ~Ii~~g~~k~~~ei~~a~~~-gv~~-~~vds~~el~~l~~~~~------~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~ 178 (424)
T 7odc_A 107 RVIYANPCKQVSQIKYAASN-GVQM-MTFDSEIELMKVARAHP------KAKLVLRIATDDSKAVCRLSVKFGATLKTSR 178 (424)
T ss_dssp GEEECCSSCCHHHHHHHHHT-TCCE-EEECSHHHHHHHHHHCT------TCEEEEEBCC-----------CCCBCHHHHH
T ss_pred hEEECCCCCCHHHHHHHHHC-CCCE-EEeCCHHHHHHHHHhCC------CCeEEEEECCCCCCCCCCCCCCCCCCHHHHH
Confidence 34677886655 57777652 3443 49999999999988642 479999999962 3589999999888
Q ss_pred hhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCC
Q psy2326 82 ALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLN 161 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~ 161 (181)
++++.+ .+ ++|++.|||++-+......+.....++.++++.+.++ ++|.+
T Consensus 179 ---------------------------~~~~~~-~~-~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~-~~G~~ 228 (424)
T 7odc_A 179 ---------------------------LLLERA-KE-LNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMAT-EVGFS 228 (424)
T ss_dssp ---------------------------HHHHHH-HH-TTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred ---------------------------HHHHHH-Hh-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 788877 45 5999999999765332112122344555666666555 35664
Q ss_pred CCCCEEeeCC
Q psy2326 162 ESNVELSMGM 171 (181)
Q Consensus 162 ~~~~~LSMGM 171 (181)
+..|.+|-
T Consensus 229 --~~~ldiGG 236 (424)
T 7odc_A 229 --MHLLDIGG 236 (424)
T ss_dssp --CCEEECCC
T ss_pred --CCEEEeCC
Confidence 67788763
No 35
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=97.96 E-value=4.4e-05 Score=68.40 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=77.2
Q ss_pred eecccc-cccHHhhhcCCCccE-EEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------CccCCCCccchhhh
Q psy2326 12 FIGHLQ-SNKVPKVIKVPNLEY-IETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE------ENKHGAHPEHAEAL 83 (181)
Q Consensus 12 fIG~LQ-sNKvk~l~~~~~~~~-I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E------~~K~Gv~p~~~~~~ 83 (181)
|-|+.. ..-++.+++ ..+ .-+|||..-++.|++.+ + +.+|.|.||++.. .+|+|++++++.
T Consensus 110 ~~g~~k~~~ei~~a~~---~gv~~~~vds~~el~~l~~~~----~--~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~-- 178 (448)
T 3btn_A 110 FTSPCKQVSQIKYAAK---VGVNIMTCDNEIELKKIARNH----P--NAKVLLHIATEDNIGGEDGNMKFGTTLKNCR-- 178 (448)
T ss_dssp ECCSSCCHHHHHHHHH---HTCCEEEECSHHHHHHHHHHC----T--TCEEEEEBCCCC--------CCCCBCHHHHH--
T ss_pred EcCCCCCHHHHHHHHH---cCCCEEEeCCHHHHHHHHHhC----C--CCeEEEEEecCCCccCCCCCCcCCCCHHHHH--
Confidence 445442 233555554 233 57999999999998753 2 6799999999744 689999998887
Q ss_pred hhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCC
Q psy2326 84 VSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNES 163 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~ 163 (181)
++++.+ .+. +|++.|+|++-+......+.....++.+..+.+.++ ++|++
T Consensus 179 -------------------------~~~~~~-~~~-~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~-~~G~~-- 228 (448)
T 3btn_A 179 -------------------------HLLECA-KEL-DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAG-EFGFT-- 228 (448)
T ss_dssp -------------------------HHHHHH-HHH-TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHH-HTTCC--
T ss_pred -------------------------HHHHHH-HhC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCC--
Confidence 777777 455 999999999976543211111223333445555554 35664
Q ss_pred CCEEeeCCc
Q psy2326 164 NVELSMGMS 172 (181)
Q Consensus 164 ~~~LSMGMS 172 (181)
...|++|-.
T Consensus 229 ~~~ldiGGG 237 (448)
T 3btn_A 229 MNMLDIGGG 237 (448)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeCCC
Confidence 567776644
No 36
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=97.95 E-value=4.2e-05 Score=67.83 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred eeccc-ccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------CccCCCCccchhhhh
Q psy2326 12 FIGHL-QSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE------ENKHGAHPEHAEALV 84 (181)
Q Consensus 12 fIG~L-QsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E------~~K~Gv~p~~~~~~~ 84 (181)
|-|+. ....++.+++. .+. .-+|||..-++.|++.+ + +++|+|.||++.. .+|.|++++++.
T Consensus 110 ~~g~~k~~~~l~~a~~~-gv~-~~~vds~~el~~l~~~~----~--~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~--- 178 (425)
T 1f3t_A 110 YANPCKQISHIRYARDS-GVD-VMTFDCVDELEKVAKTH----P--KAKMVLRISTDDSLARCRLSVKFGAKVEDCR--- 178 (425)
T ss_dssp ECCSSCCHHHHHHHHHT-TCC-EEEECSHHHHHHHHHHC----T--TCEEEEEBCC----------CCSCBCHHHHH---
T ss_pred EcCCCCCHHHHHHHHHC-CCC-EEEeCCHHHHHHHHHhC----C--CCcEEEEEcCCCCCccCCCCCcCCCCHHHHH---
Confidence 34554 23356666652 232 58999999999998753 2 5899999999732 579999998887
Q ss_pred hhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q psy2326 85 SHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESN 164 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~ 164 (181)
++++.+ .+. +|++.|+|++-+......+.....++.+.++.+.++ ++|++ .
T Consensus 179 ------------------------~~~~~~-~~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~-~~G~~--~ 229 (425)
T 1f3t_A 179 ------------------------FILEQA-KKL-NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGT-ELGFN--M 229 (425)
T ss_dssp ------------------------HHHHHH-HHT-TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHH-HTTCC--C
T ss_pred ------------------------HHHHHH-HhC-CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCC--C
Confidence 788877 455 999999999976432211111122333445555554 35654 5
Q ss_pred CEEeeCCc
Q psy2326 165 VELSMGMS 172 (181)
Q Consensus 165 ~~LSMGMS 172 (181)
..+.+|-.
T Consensus 230 ~~l~iGGG 237 (425)
T 1f3t_A 230 HILDIGGG 237 (425)
T ss_dssp CEEECCCC
T ss_pred CEEEeCCC
Confidence 56776543
No 37
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=97.85 E-value=9.5e-05 Score=66.91 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=77.6
Q ss_pred eeccccc-ccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------CccCCCCccchhhhh
Q psy2326 12 FIGHLQS-NKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE------ENKHGAHPEHAEALV 84 (181)
Q Consensus 12 fIG~LQs-NKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E------~~K~Gv~p~~~~~~~ 84 (181)
|-|+..+ .-++.+++. .+. .-+|||..-++.|++.+ + +.+|+|.||++.. .+|+|++++++.
T Consensus 120 ~~g~~k~~~ei~~a~~~-gv~-~~~vds~~el~~l~~~~----~--~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~--- 188 (471)
T 2oo0_A 120 YANPCKQVSQIKYAANN-GVQ-MMTFDSEVELMKVARAH----P--KAKLVLRIATDDSKAVCRLSVKFGATLRTSR--- 188 (471)
T ss_dssp ECCSSCCHHHHHHHHHT-TCC-EEEECSHHHHHHHHHHC----T--TCEEEEEECCCCTTSSBCCTTTSCBCHHHHH---
T ss_pred EeCCCCCHHHHHHHHHC-CCC-EEEECCHHHHHHHHHhC----C--CCeEEEEEcCCCCCCCCCCCCCCCCCHHHHH---
Confidence 4455432 335555542 233 48999999999998753 2 5899999999732 579999998887
Q ss_pred hhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q psy2326 85 SHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESN 164 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~~~~~~~ 164 (181)
++++.+ .+. +|++.|++++-+......+.....++.+..+.+.++ ++|++ .
T Consensus 189 ------------------------~~~~~~-~~~-~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~-~~G~~--~ 239 (471)
T 2oo0_A 189 ------------------------LLLERA-KEL-NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGA-EVGFS--M 239 (471)
T ss_dssp ------------------------HHHHHH-HHT-TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHH-HHTCC--C
T ss_pred ------------------------HHHHHH-HhC-CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCC--C
Confidence 788877 456 999999999976432111111122333345555554 35664 5
Q ss_pred CEEeeCCc
Q psy2326 165 VELSMGMS 172 (181)
Q Consensus 165 ~~LSMGMS 172 (181)
..|.+|-.
T Consensus 240 ~~ldiGGG 247 (471)
T 2oo0_A 240 YLLDIGGG 247 (471)
T ss_dssp CEEECCCC
T ss_pred CEEEECCC
Confidence 66776544
No 38
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=97.68 E-value=0.00013 Score=63.43 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=64.2
Q ss_pred eeeccc-ccccHHhhhcCCCccE-EEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------------CccCCCC
Q psy2326 11 HFIGHL-QSNKVPKVIKVPNLEY-IETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE------------ENKHGAH 76 (181)
Q Consensus 11 HfIG~L-QsNKvk~l~~~~~~~~-I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E------------~~K~Gv~ 76 (181)
.|-|+. ....++.+++ ..+ .-+|||..-++.|++.+.+ +.+|++.||.+.. .+|.|++
T Consensus 86 l~~~~~k~~~~l~~a~~---~~v~~~~vds~~el~~l~~~a~~-----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~ 157 (386)
T 2yxx_A 86 VWNGNGKSRDQMEHFLR---EDVRIVNVDSFEEMEIWRELNPE-----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIP 157 (386)
T ss_dssp EECCSCCCHHHHHHHHH---TTCCEEEECCHHHHHHHHHHCCT-----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEE
T ss_pred EEeCCCCCHHHHHHHHH---CCCCEEEeCCHHHHHHHHHhcCc-----CCeEEEEECCCCCCCCCcccccCCCCCCCCCC
Confidence 456764 4556777765 345 7899999999999886543 4789999997643 3899999
Q ss_pred ccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCC
Q psy2326 77 PEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYG 133 (181)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~ 133 (181)
+++ . ++++ . ++|+|++.|+|++-+..
T Consensus 158 ~~~-~---------------------------~~~~-~--~~~~l~~~Gl~~H~gs~ 183 (386)
T 2yxx_A 158 LED-L---------------------------DSFM-E--RFRSMNIRGLHVHIGSQ 183 (386)
T ss_dssp GGG-H---------------------------HHHH-H--HHTTSCEEEEECCCCSS
T ss_pred hhH-H---------------------------HHHh-h--ccCCCcEEEEEEECCCC
Confidence 888 7 6676 3 47999999999998754
No 39
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=97.60 E-value=0.00024 Score=62.91 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=75.4
Q ss_pred eeccc-ccccHHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeC------------CCCCccCCCCcc
Q psy2326 12 FIGHL-QSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT------------SGEENKHGAHPE 78 (181)
Q Consensus 12 fIG~L-QsNKvk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~------------s~E~~K~Gv~p~ 78 (181)
|-|+. ....++.+++ ..+.-+|||..-++.|++.+.+ .+|.+.||. ++..+|.|++++
T Consensus 99 ~~g~~k~~~~l~~a~~---~~i~~~vds~~el~~l~~~a~~------~~v~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~ 169 (425)
T 1knw_A 99 FTADVIDQATLERVSE---LQIPVNAGSVDMLDQLGQVSPG------HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYT 169 (425)
T ss_dssp EEESCCCHHHHHHHHH---HTCCEEESSHHHHHHHHHHSTT------CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGG
T ss_pred EECCCCCHHHHHHHHH---cCCEEEECCHHHHHHHHHhhhh------ccEEEEECCCCCCCCCcccccCCCCCCCcCCHH
Confidence 44643 3455666665 2344899999999999887542 477888774 445789999998
Q ss_pred chhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecCCCCCCCCCCccHHHHHHHHHHHHHHHhc
Q psy2326 79 HAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKL 158 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~~~~~d~~~~~~~~F~~L~~l~~~l~~~~ 158 (181)
++. ++++.+ .++ +|++.|+|++-+...+ ....-+.++.+.+.+ +++
T Consensus 170 ~~~---------------------------~~~~~~-~~~-~l~l~Gl~~H~gs~~~----~~~~~~~~~~~~~~~-~~~ 215 (425)
T 1knw_A 170 DLP---------------------------AALDVI-QRH-HLQLVGIHMHIGSGVD----YAHLEQVCGAMVRQV-IEF 215 (425)
T ss_dssp GHH---------------------------HHHHHH-HHT-TCEEEEEECCCCCTTC----HHHHHHHHHHHHHHH-HHH
T ss_pred HHH---------------------------HHHHHH-HHC-CCCEEEEEEECCCCCC----HHHHHHHHHHHHHHH-HHh
Confidence 888 788887 567 9999999999764332 222223344444433 345
Q ss_pred CCCCCCCEEeeC
Q psy2326 159 NLNESNVELSMG 170 (181)
Q Consensus 159 ~~~~~~~~LSMG 170 (181)
|++ ...+++|
T Consensus 216 G~~--~~~ln~G 225 (425)
T 1knw_A 216 GQD--LQAISAG 225 (425)
T ss_dssp TCC--CSEEECC
T ss_pred CCC--CcEEEeC
Confidence 654 5567774
No 40
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=96.77 E-value=0.0036 Score=55.88 Aligned_cols=65 Identities=9% Similarity=0.047 Sum_probs=48.9
Q ss_pred ceeeeeccccccc-HHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeC------------CCCCccCC
Q psy2326 8 IRWHFIGHLQSNK-VPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT------------SGEENKHG 74 (181)
Q Consensus 8 i~WHfIG~LQsNK-vk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~------------s~E~~K~G 74 (181)
-+++|.|+.++.. ++.+++. .+ . -+|||..-++.|++.+. +.+|+|.||. ++..+|+|
T Consensus 112 ~~Ii~~~~~k~~~el~~A~~~-g~-~-i~vds~~EL~~l~~~a~------~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG 182 (418)
T 3n29_A 112 KEIHTYSPAFKEDEIGEIASL-SH-H-IVFNSLAQFHKFQSKTQ------KNSLGLRCNVEFSLAPKELYNPCGRYSRLG 182 (418)
T ss_dssp SEEEEEESSCCHHHHHHHHHH-CS-E-EEESSHHHHHHHGGGCT------TSEEEEEBCCCCC----------CTTCCSS
T ss_pred CCEEEECCCCCHHHHHHHHHc-CC-e-EEECCHHHHHHHHHhcC------CCCEEEEEeCCCCCCCCcccccCCCCCcCc
Confidence 3688999987765 6666652 23 3 38999999998887654 4789999975 44569999
Q ss_pred CCccchh
Q psy2326 75 AHPEHAE 81 (181)
Q Consensus 75 v~p~~~~ 81 (181)
++++++.
T Consensus 183 i~~~~~~ 189 (418)
T 3n29_A 183 IRAKDFE 189 (418)
T ss_dssp BCGGGGT
T ss_pred CCHHHHH
Confidence 9999887
No 41
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=96.51 E-value=0.0083 Score=52.13 Aligned_cols=65 Identities=8% Similarity=-0.021 Sum_probs=44.5
Q ss_pred ceeeeeccccccc-HHhhhcCCCccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeC------------CCCCccCC
Q psy2326 8 IRWHFIGHLQSNK-VPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINT------------SGEENKHG 74 (181)
Q Consensus 8 i~WHfIG~LQsNK-vk~l~~~~~~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~------------s~E~~K~G 74 (181)
-+++|.|+.++.. ++.+++. . ..-+|||..-++.|++.+.+ .+|.+.||. +.+.+|+|
T Consensus 72 ~~ii~~~~~k~~~el~~a~~~-g--~~i~vds~~el~~l~~~a~~------~~v~lRvnp~~~~~~~~~i~tg~~~sKFG 142 (365)
T 3mt1_A 72 KETHAYSVAYGDNEIDEVVSH-A--DKIIFNSISQLERFADKAAG------IARGLRLNPQVSSSSFDLADPARPFSRLG 142 (365)
T ss_dssp SEEEEEESCCCTTTHHHHHHH-C--SEEEESSHHHHHHHGGGGTT------SEEEEEECCC----------------CCS
T ss_pred CceEEECCCCCHHHHHHHHHc-C--CEEEECCHHHHHHHHHHhcc------CCEEEEEecCCCCCCCccccCCCCCCcCC
Confidence 4789999987654 7777652 2 23489999999999887653 456777664 44569999
Q ss_pred CCccchh
Q psy2326 75 AHPEHAE 81 (181)
Q Consensus 75 v~p~~~~ 81 (181)
++++++.
T Consensus 143 ~~~~~~~ 149 (365)
T 3mt1_A 143 EWDVPKV 149 (365)
T ss_dssp BCCHHHH
T ss_pred CCHHHHh
Confidence 9998876
No 42
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=30.52 E-value=1.6e+02 Score=21.53 Aligned_cols=91 Identities=8% Similarity=0.020 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCccCCCCccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhC
Q psy2326 39 TRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSC 118 (181)
Q Consensus 39 ~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E~~K~Gv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 118 (181)
..+.+.+++...... .++ |-|+.|. |-.++++++.. ..++.+++.+.+..
T Consensus 60 ~~~~~~~~~~~~~~~----pd~-Vvi~~G~--ND~~~~~~~~~-----------------------~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 60 PALIEELAVVLKNTK----FDV-IHFNNGL--HGFDYTEEEYD-----------------------KSFPKLIKIIRKYA 109 (200)
T ss_dssp HHHHHHHHHHHHHSC----CSE-EEECCCS--SCTTSCHHHHH-----------------------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCC----CCe-EEEEeee--CCCCCCHHHHH-----------------------HHHHHHHHHHhhhC
Confidence 445555655554433 233 3367773 33456666654 23457888887778
Q ss_pred CCceEeeeeecCCCCCCCC----CCccHHHHHHHHHHHHHHHhcCC
Q psy2326 119 PNLEFTGLMTIGKYGYDTK----HGPNPDFLELAKCRKDVCKKLNL 160 (181)
Q Consensus 119 p~L~l~GLMTi~~~~~d~~----~~~~~~F~~L~~l~~~l~~~~~~ 160 (181)
|+-++..+.+ .|...... ...+.....+.+...+++++.+.
T Consensus 110 p~~~ii~~~~-~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v 154 (200)
T 4h08_A 110 PKAKLIWANT-TPVRTGEGMKEFAPITERLNVRNQIALKHINRASI 154 (200)
T ss_dssp TTCEEEEECC-CCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccEEEecc-CCCcccccccccchhHHHHHHHHHHHHHHhhhcce
Confidence 8887765443 33322111 12233444555555556665543
No 43
>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A {Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A*
Probab=29.52 E-value=81 Score=26.65 Aligned_cols=46 Identities=26% Similarity=0.523 Sum_probs=31.9
Q ss_pred CceEEEEEeCCCCCccCC--CCccchhhhhhhhccCCCCCcccCCCCCCchhHHHHHHHHHhhCCCceEeeeeecC
Q psy2326 57 KLKVFCQINTSGEENKHG--AHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIG 130 (181)
Q Consensus 57 ~l~VliQVN~s~E~~K~G--v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~L~l~GLMTi~ 130 (181)
.-+|++=+-++.+...+| ++|+++. ..+...+++.|. +|.|+|+=-
T Consensus 239 ~~KlvlGlPa~~~aag~G~yv~p~~l~---------------------------~~~~~~~~~~~~-~~gGvM~W~ 286 (310)
T 2xtk_A 239 DAKLYVGLPASETAANQGYYLTPDEVE---------------------------SLVSTYMDRYPD-TFGGIMLWE 286 (310)
T ss_dssp TCEEEEEEESSTTTSSTTCCCCHHHHH---------------------------HHHHHHHHHCTT-TEEEEEEEC
T ss_pred chhEEEeecCCcccCCCCceeCHHHHH---------------------------HHHHHHHhccCC-CCcEEEEEc
Confidence 358999999987665667 6887776 455544344432 799999964
No 44
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=26.92 E-value=2.5e+02 Score=25.74 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=59.0
Q ss_pred ccEEEEeccHHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-CccCCCCccchhhhhhhhccCCCCCcccCCCCCCchhHH
Q psy2326 30 LEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQINTSGE-ENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAE 108 (181)
Q Consensus 30 ~~~I~sVDs~~lA~~L~~~~~~~~~~~~l~VliQVN~s~E-~~K~Gv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+-+++|+-++.=|+.+-.++.+... .++|++.+.+..+ ...+|-+++++...+.+ .+-.-+---|+.+|.++.
T Consensus 142 ~l~~ET~~~~~Ea~aa~~a~~~~~~--~~Pv~vS~t~~~~g~~~~G~~~~~~~~~l~~----~~~~avG~NC~~gp~~~~ 215 (566)
T 1q7z_A 142 GIIFETFSDILELKAAVLAAREVSR--DVFLIAHMTFDEKGRSLTGTDPANFAITFDE----LDIDALGINCSLGPEEIL 215 (566)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHCS--SSCEEEEECCCTTSCCTTSCCHHHHHHHHHT----SSCSEEEEESSSCHHHHH
T ss_pred EEEEeccCCHHHHHHHHHHHHHhCC--CCcEEEEEEEcCCCeeCCCCcHHHHHHHhhc----cCCCEEEEeCCCCHHHHH
Confidence 4467999999999988888876433 5789999988533 23589998887654443 222233445778999999
Q ss_pred HHHHHHHhhCCC
Q psy2326 109 ALVSHVINSCPN 120 (181)
Q Consensus 109 ~l~~~i~~~~p~ 120 (181)
.+++.+. ....
T Consensus 216 ~~l~~l~-~~~~ 226 (566)
T 1q7z_A 216 PIFQELS-QYTD 226 (566)
T ss_dssp HHHHHHH-HTCC
T ss_pred HHHHHHH-hcCC
Confidence 9999884 4434
No 45
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor}
Probab=20.00 E-value=1.1e+02 Score=25.54 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=18.3
Q ss_pred CceEEEEEeCCCCCccCCC-Cccchh
Q psy2326 57 KLKVFCQINTSGEENKHGA-HPEHAE 81 (181)
Q Consensus 57 ~l~VliQVN~s~E~~K~Gv-~p~~~~ 81 (181)
+=+|++=+..+.+..-+|. +|+++.
T Consensus 216 ~~KIvlGlPa~~~aag~Gyv~~~~l~ 241 (302)
T 3ebv_A 216 PSQVGLGLPASTRAAGGGYVSPSVVN 241 (302)
T ss_dssp GGGEEEEEESSTTSCSSCCCCHHHHH
T ss_pred HHHEEEecccCCCcCCCCCcCHHHHH
Confidence 4579999999877666774 666665
Done!