RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2326
(181 letters)
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel,
pyridoxal-5'-phosphate, selenomethionine, structural
genomics, PSI; HET: PLP; 2.00A {Saccharomyces
cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Length = 256
Score = 163 bits (416), Expect = 3e-51
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 6 KDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPD-KKLKVFCQI 64
DI+WHFIG LQ+NK + KVPNL +ETI + A ++N + AK QPD + QI
Sbjct: 83 DDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQI 142
Query: 65 NTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFT 124
NTS E+ K G + E E E + + C ++
Sbjct: 143 NTSHEDQKSGLNNEA-------------------------EIFEVIDFFLSEECKYIKLN 177
Query: 125 GLMTIGKYGYDT-KHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
GLMTIG + N DF L + +K + K ++++LSMGMS+D
Sbjct: 178 GLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAK---FGTSLKLSMGMSADF 226
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics,
PSI-biology, protei structure initiative; HET: MES;
1.47A {Escherichia coli} PDB: 1w8g_A*
Length = 245
Score = 131 bits (331), Expect = 2e-38
Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 36/171 (21%)
Query: 5 CKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQI 64
+ W+F G LQSNK +++ + ++ TI R+AT++N+ L V QI
Sbjct: 75 VTGLEWNFAGPLQSNKS-RLV-AEHFDWCITIDRLRIATRLNDQRPAE--LPPLNVLIQI 130
Query: 65 NTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFT 124
N S E +K G + L + + P L
Sbjct: 131 NISDENSKSGIQLAELDELAAA----------------------------VAELPRLRLR 162
Query: 125 GLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
GL I + F + L++G S D+
Sbjct: 163 GLSAIPAPESE----YVRQFEVARQMAVAFAGLKTRYPHIDTLALGQSDDM 209
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703}
Length = 282
Score = 127 bits (322), Expect = 8e-37
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 34/175 (19%)
Query: 2 TSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVF 61
+ + I +H IG LQSNK+ KV +P ++ IE++ LA +++ + V
Sbjct: 109 DAAAEHIPFHLIGQLQSNKIGKV--LPVVDTIESVDSIDLAEKISRRAVAR--GITVGVL 164
Query: 62 CQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNL 121
++N SGEE+K G P HA + I + +
Sbjct: 165 LEVNESGEESKSGCDPAHAIRIAQK----------------------------IGTLDGI 196
Query: 122 EFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNV-ELSMGMSSDL 175
E GLMTIG + +D F L K R + ELSMGM+ D+
Sbjct: 197 ELQGLMTIGAHVHDETV-IRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDM 250
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
structural genomi research consortium, TIM barrel; HET:
PLP; 1.90A {Agrobacterium tumefaciens}
Length = 244
Score = 114 bits (289), Expect = 2e-32
Identities = 45/175 (25%), Positives = 63/175 (36%), Gaps = 44/175 (25%)
Query: 1 ITSKCKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKV 60
+ K DI H IG LQSNK V + +E+I ++A ++ A+ + L+
Sbjct: 71 LKEKTSDIELHLIGPLQSNKAADA--VALFDVVESIDREKIARALSEECARQ--GRSLRF 126
Query: 61 FCQINTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPN 120
+ Q+NT E K G P A V+ +
Sbjct: 127 YVQVNTGLEPQKAGIDPRETVAFVAFCRD----------------------------ELK 158
Query: 121 LEFTGLMTIGKYGYDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDL 175
L GLM I + P P F LAK + L + LSMGMS D
Sbjct: 159 LPVEGLMCIPPAEEN----PGPHFALLAKLAG----QCGLEK----LSMGMSGDF 201
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 31.7 bits (73), Expect = 0.11
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G + E + S + + P++E TG+ T
Sbjct: 131 GVDEQEWEGVFSA-LAAAPHIEVTGMFT 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.37
Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 87/248 (35%)
Query: 1 ITSKCKD--IRWHFIGHLQSNKVPKVIK--VPNLEYIETIH----------DTRLATQV- 45
I +D W H+ +K+ +I+ + LE E + T +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 46 NNAWAKHQPD------KKLKVFCQINTSGEENKHGAH---------PEHAEALVSH--VI 88
+ W KL + + +E+ E+ AL H ++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIV 450
Query: 89 NS-------CPN---LEFTDK--------HGAHPEHAEA-------------LVSHVINS 117
+ + + D+ H + EH E L + +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 118 CPNLEFTG-----LMTIGKY-GYDTKHGPNP--------DFLELAKCRKDV--CKKLNLN 161
+G L + Y Y + P DFL K +++ K +L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP--KIEENLICSKYTDL- 567
Query: 162 ESNVELSM 169
+ +++
Sbjct: 568 ---LRIAL 572
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure
for C-terminal domain, internal/external aldimine forms,
isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas
aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Length = 357
Score = 29.7 bits (68), Expect = 0.41
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G PE A + + + +M+
Sbjct: 131 GFFPEDFRAAHER-LRASGKVAKIVMMS 157
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain,
pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP
KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Length = 367
Score = 29.4 bits (67), Expect = 0.59
Identities = 3/28 (10%), Positives = 6/28 (21%), Gaps = 1/28 (3%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G + + G+ T
Sbjct: 138 GFREASEVEQAQD-LLQQHGVCVEGIFT 164
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX
DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2
c.1.6.1 PDB: 1vfh_A* 1vft_A*
Length = 386
Score = 29.0 bits (66), Expect = 0.72
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 101 GAHPEHAEALVSHV--INSCPNLEFTGLMT 128
G P LV + ++ TG+ +
Sbjct: 138 GCQPADWAELVGAAVAAQAEGTVQVTGVWS 167
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal
domain, INT aldimine form, isomerase; HET: PLP; 1.90A
{Mycobacterium tuberculosis}
Length = 384
Score = 29.0 bits (66), Expect = 0.81
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 101 GAHPEHAEALVSHV--INSCPNLEFTGLMT 128
G P A+++ + + + GLM+
Sbjct: 142 GVGPAQFPAMLTALRQAMAEDAVRLRGLMS 171
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 29.1 bits (66), Expect = 0.87
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 56 KKLKVFCQINTSGE------ENKHGAHPEHAEAL 83
K+ +I NK GA+ + L
Sbjct: 126 PNCKMILRIRCDDPNATVQLGNKFGANEDEIRHL 159
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Geobacillus
stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
1ftx_A* 3uw6_A
Length = 388
Score = 28.6 bits (65), Expect = 1.2
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G E + +I P+ GL T
Sbjct: 138 GVKDEEETKRIVALIERHPHFVLEGLYT 165
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.50A
{Oenococcus oeni psu-1}
Length = 395
Score = 28.3 bits (64), Expect = 1.3
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G + +I+ P L+ + T
Sbjct: 137 GFDKADEISAAKKIIDKNPQLDLFSVYT 164
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 28.0 bits (63), Expect = 1.6
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 19/56 (33%)
Query: 73 HGAH-----PEHAEALVS-------HVINSCPNLEFTDKHGAHPEHAEALVSHVIN 116
HG HA+ + H++ H H A+ +
Sbjct: 203 HGEKDPLVPRFHADFIHKHVKGSRLHLMPEGK-------HNLHLRFADEFNKLAED 251
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center
for infect disease, iodide SOAK, LLP, CAT-scratch DI
isomerase; HET: LLP; 2.04A {Bartonella henselae}
Length = 376
Score = 28.2 bits (64), Expect = 1.7
Identities = 3/28 (10%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G + + L+ + E +++
Sbjct: 152 GLDKKELQKLIKN-PTIFEKAEIKYILS 178
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin
resistance, center for STR genomics of infectious
diseases (csgid); HET: MSE; 2.02A {Enterococcus
faecalis}
Length = 374
Score = 27.8 bits (63), Expect = 1.9
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G E + +++ S +++ G+ T
Sbjct: 134 GFSTEDKDKILA--AFSLKHIKVAGIFT 159
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET:
PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Length = 371
Score = 27.8 bits (63), Expect = 2.0
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 103 HPEHAEALVSHVINSCPNLEFTGLMT 128
PE + V + S + G+ T
Sbjct: 144 TPEETKQAVRF-VQSHKEFLWEGIFT 168
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.3
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 23/47 (48%)
Query: 53 QPDKKL----KVFCQINTSGEENKHGAHPEHAEALVSHVINSCPNLE 95
Q KKL K++ + A AL I + +E
Sbjct: 20 QALKKLQASLKLYA--------------DDSAPAL---AIKA--TME 47
Score = 25.7 bits (55), Expect = 7.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 89 NSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLE 122
+ L+ + K A + A AL I + +E
Sbjct: 20 QALKKLQASLKLYA-DDSAPAL---AIKA--TME 47
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP;
2.15A {Staphylococcus aureus} PDB: 3oo2_A
Length = 382
Score = 27.5 bits (62), Expect = 3.0
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 101 GAHPEHAEALVSHVINSCPNLEFTGLMT 128
G + V +I L F G+ T
Sbjct: 140 GIKDTNTYQEVIEIIQQYEQLVFEGVFT 167
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 4.0
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 25 IKVPNLEYIETIHD-----TRLATQVNNAWAKHQPDKKLKVFCQINTSGEENKH 73
I++P E + + ++ ++N K + Q E +
Sbjct: 176 IELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK-LYYVQFFFKQAEQEQ 228
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 26.8 bits (60), Expect = 4.4
Identities = 5/56 (8%), Positives = 11/56 (19%), Gaps = 19/56 (33%)
Query: 73 HGAH-----PEHAEALV-------SHVINSCPNLEFTDKHGAHPEHAEALVSHVIN 116
+G + L S++ H H ++
Sbjct: 203 YGYLDGLVPRKVVPMLDKLWPHSESYIFAKAA-------HAPFISHPAEFCHLLVA 251
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 27.0 bits (58), Expect = 4.5
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 131 KYGYDTK-HGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERESS 181
K G D ++ KC + LNL ++ L G SDL +
Sbjct: 1549 KQGTDENPRAKTHQYISQRKC----QEALNLKVNDDYLIWGSRSDLLPTKDK 1596
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme,
oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB:
2cwf_A* 2cwh_A*
Length = 343
Score = 26.5 bits (59), Expect = 5.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 72 KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
HG PE A+ L + ++ + + HG P + +L S ++
Sbjct: 28 VHGTSPEVADVLAENCASA--QRDGSHSHGIFRIPGYLSSLASGWVDGKAVPVVE 80
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein
structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI;
2.25A {Escherichia coli} SCOP: c.122.1.1
Length = 351
Score = 26.2 bits (58), Expect = 6.5
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 72 KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
+ G EHA + ++ + + HGA +AE + N P
Sbjct: 20 QAGLKREHAATVAEVLVYA--DARGIHSHGAVRVEYYAERISKGGTNREPEFRLE 72
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M,
hyperthermostable, Pro-S hydrogen transfer; HET: NAD;
2.50A {Methanocaldococcus jannaschii} SCOP: c.122.1.1
PDB: 2x06_A*
Length = 344
Score = 26.1 bits (58), Expect = 6.6
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 72 KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
K G E A+ +++ +L+ HG P++ AL IN P+++
Sbjct: 18 KFGVPEEDAKITADVFVDA--DLKGFTSHGIGRFPQYITALKLGNINPKPDIKIV 70
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium,
metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Length = 554
Score = 26.3 bits (57), Expect = 6.9
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 134 YDTKHGPNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRERESS 181
Y N LE AK ++ + L+ E + D + +
Sbjct: 221 YQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPY 268
>1qwv_A PBP, pheromone-binding protein; APOLPBP, hexahelical fold, PBP
fold, transport protein; NMR {Antheraea polyphemus}
SCOP: a.39.2.1 PDB: 1two_A 2jpo_A 2kph_A
Length = 142
Score = 25.6 bits (56), Expect = 8.3
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 21/71 (29%)
Query: 94 LEFTDKHGAHPEHAEALVSHVINSCPNLEFTGLMTIGKYGYDTKHGPNPD----FLELAK 149
+F KHGA A+ LV +I+ C + PN D +++A
Sbjct: 74 KDFAMKHGADETMAQQLVD-IIHGC----------------EKSAPPNDDKCMKTIDVAM 116
Query: 150 CRKDVCKKLNL 160
C K KLN
Sbjct: 117 CFKKEIHKLNW 127
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural
genomics, PSI, protein structure initiative; 1.80A
{Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Length = 333
Score = 25.7 bits (57), Expect = 8.8
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 72 KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
G E A+A + HG + P + L + I +
Sbjct: 18 SRGVDSETADACAEMFART--TESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRI 70
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL
biogenesis/degradat isomerase, peptidoglycan synthesis,
pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia
coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Length = 379
Score = 25.9 bits (58), Expect = 8.9
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 101 GAHPEHAEALVSHVINSCPNL-EFTGLMT 128
G PE AEA + C N+ + +++
Sbjct: 151 GVRPEQAEAFYHR-LTQCKNVRQPVNIVS 178
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.31A {Sinorhizobium meliloti}
Length = 357
Score = 25.8 bits (57), Expect = 9.0
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 72 KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
K G + A + ++ + L HG P L + N T
Sbjct: 41 KRGVPADSARLQANLLLEA--ELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGT 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.402
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,742,011
Number of extensions: 150569
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 42
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)