RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2326
         (181 letters)



>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 244

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 30/175 (17%)

Query: 5   CKDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDK-KLKVFCQ 63
             DI+WHFIG LQ+NK   + KVPNL  +ETI   + A ++N + AK QPD   +    Q
Sbjct: 81  PDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQ 140

Query: 64  INTSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEF 123
           INTS E+ K G + E                          E  E +   +   C  ++ 
Sbjct: 141 INTSHEDQKSGLNNEA-------------------------EIFEVIDFFLSEECKYIKL 175

Query: 124 TGLMTIGKYGYDTKHG-PNPDFLELAKCRKDVCKKLNLNESNVELSMGMSSDLRE 177
            GLMTIG +    +    N DF  L + +K +  K   +   ++LSMGMS+D RE
Sbjct: 176 NGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS---LKLSMGMSADFRE 227


>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 344

 Score = 27.0 bits (59), Expect = 1.4
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 72  KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFTGLMTI 129
           K G   E A+      +++  +L+    HG    P++  AL    IN  P+++     + 
Sbjct: 18  KFGVPEEDAKITADVFVDA--DLKGFTSHGIGRFPQYITALKLGNINPKPDIKIVKE-SP 74

Query: 130 GKYGYDTKHGPNPDFLELA------KCRKDVCKKLNLNESNV 165
                D   G      + A      K +      +    +N 
Sbjct: 75  ATAVIDGDLGLGQVVGKKAMELAIKKAKNVGVGVVATRNANH 116


>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 151

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 155 CKKLNLNESNVELSMGMSSDLRERESS 181
           C    L +    L MG  +   +  +S
Sbjct: 81  CTNAELVKGRQYLIMGKEALQIKYNAS 107


>d1xrha_ c.122.1.1 (A:) Ureidoglycolate dehydrogenase AllD
           {Escherichia coli [TaxId: 562]}
          Length = 343

 Score = 26.3 bits (57), Expect = 2.2
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 72  KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
           + G   EHA  +   ++ +  +      HGA     +AE +     N  P     
Sbjct: 19  QAGLKREHAATVAEVLVYA--DARGIHSHGAVRVEYYAERISKGGTNREPEFRLE 71


>d2cg7a2 g.27.1.1 (A:62-108) Fibronectin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 47

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 2/39 (5%)

Query: 33 IETIHDTRLAT--QVNNAWAKHQPDKKLKVFCQINTSGE 69
           ET  D       +V + + + +        C     G 
Sbjct: 2  EETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGR 40


>d1nxua_ c.122.1.1 (A:) 2,3-diketogulonate oxidoreductase (YiaK)
           {Escherichia coli [TaxId: 562]}
          Length = 332

 Score = 25.1 bits (54), Expect = 5.4
 Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 72  KHGAHPEHAEALVSHVINSCPNLEFTDKHGAH--PEHAEALVSHVINSCPNLEFT 124
             G   E A+A       +         HG +  P   + L +  I      +  
Sbjct: 18  SRGVDSETADACAEMFART--TESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRI 70


>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
           N-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 250

 Score = 24.8 bits (53), Expect = 5.9
 Identities = 12/140 (8%), Positives = 32/140 (22%), Gaps = 6/140 (4%)

Query: 6   KDIRWHFIGHLQSNKVPKVIKVPNLEYIETIHDTRLATQVNNAWAKHQPDKKLKVFCQIN 65
           K+I    + H + +    +         +         +          D  +    +  
Sbjct: 76  KEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEER 135

Query: 66  TSGEENKHGAHPEHAEALVSHVINSCPNLEFTDKHGAHPEHAEALVSHVINSCPNLEFTG 125
             G +              + V      L   D  G +      L+  +++         
Sbjct: 136 EIGGKKFKFVMTPWLHWPDTMVTYLDGILFSCDVGGGY------LLPEILDDSNESVVER 189

Query: 126 LMTIGKYGYDTKHGPNPDFL 145
            +        T  G   +++
Sbjct: 190 YLPHVTKYIVTVIGHYKNYI 209


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,841
Number of extensions: 29252
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 8
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)