BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2327
         (97 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
          taurus GN=PROSC PE=2 SV=1
          Length = 273

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 4  AIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLE 63
          A++   E+V+QA ARRP++L   +PRLVAVSKTKP +++IEAY+ GQR FGENYVQELLE
Sbjct: 16 ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLE 75

Query: 64 KGHDPEI 70
          K  +P+I
Sbjct: 76 KASNPQI 82


>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
          sapiens GN=PROSC PE=1 SV=1
          Length = 275

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%)

Query: 4  AIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLE 63
          A++   E+V+QA ARRP++L   +PRLVAVSKTKP +++IEAY  GQR FGENYVQELLE
Sbjct: 16 ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75

Query: 64 KGHDPEI 70
          K  +P+I
Sbjct: 76 KASNPKI 82


>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
          musculus GN=Prosc PE=1 SV=1
          Length = 274

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 54/67 (80%)

Query: 4  AIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLE 63
          A++   E+V+Q+ ARRP++L   +PRLVAVSKTKP +++IEAY  GQR FGENYVQELLE
Sbjct: 16 ALRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75

Query: 64 KGHDPEI 70
          K  +P+I
Sbjct: 76 KASNPKI 82


>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein
          OS=Pongo abelii GN=PROSC PE=2 SV=1
          Length = 275

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 4  AIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLE 63
          A++   E+V+QA A RP++L   +PRLVAVSKTKP +++IEAY  GQR FGENYVQELLE
Sbjct: 16 ALRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75

Query: 64 KGHDPEI 70
          K  +P+I
Sbjct: 76 KASNPKI 82


>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
          alginolyticus PE=3 SV=1
          Length = 233

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 35/52 (67%), Gaps = 5/52 (9%)

Query: 13 EQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          EQ C R P+ +Q     L+AVSKTKP E I+EAY  GQ  FGENYVQE + K
Sbjct: 19 EQKCGRTPESVQ-----LLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSK 65


>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972
          / ATCC 24843) GN=SPAC644.09 PE=3 SV=1
          Length = 237

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query: 30 LVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          LVAVSK  P E ++EAYN GQRHFGENY+QE L+K
Sbjct: 26 LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKK 60


>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain
          ATCC 39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
          Length = 236

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 10/74 (13%)

Query: 5  IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          I   +E  +Q C R    +Q     L+AVSKTKP E I+EA   GQR+FGENYVQE ++K
Sbjct: 11 ITAQIESAQQKCGRARSSVQ-----LLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDK 65

Query: 65 -----GHDPEISIQ 73
                H P+++++
Sbjct: 66 IRYFAEHHPQLALE 79


>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS
          PE=1 SV=1
          Length = 234

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 3  AAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELL 62
          A ++  +      C R P+E+      L+AVSKTKP   I EA + GQR FGENYVQE +
Sbjct: 9  AQVRDKISAAATRCGRSPEEIT-----LLAVSKTKPASAIAEAIDAGQRQFGENYVQEGV 63

Query: 63 EK 64
          +K
Sbjct: 64 DK 65


>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
          ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
          Length = 234

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 3  AAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELL 62
          A ++  +      C R P+E+      L+AVSKTKP   I EA + GQR FGENYVQE +
Sbjct: 9  AQVRDKISAAATRCGRSPEEIT-----LLAVSKTKPASAIAEAIDAGQRQFGENYVQEGV 63

Query: 63 EK 64
          +K
Sbjct: 64 DK 65


>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3
          SV=1
          Length = 234

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 3  AAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELL 62
          A ++  +      C R P+E+      L+AVSKTKP   I EA + GQR FGENYVQE +
Sbjct: 9  AQVRDKISAAATRCGRSPEEIT-----LLAVSKTKPASAIAEAIDAGQRQFGENYVQEGV 63

Query: 63 EK 64
          +K
Sbjct: 64 DK 65


>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
          OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
          Length = 255

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 29 RLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKG 65
          +LVAVSKTKP E+I   Y+ G RHFGENY+QEL+ K 
Sbjct: 34 KLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKS 70


>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
          OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
          Length = 244

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 29/38 (76%)

Query: 27 RPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          R RLVAVSKTK  +LI   Y+  QRHFGENYVQEL EK
Sbjct: 29 RCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEK 66


>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
          GN=PM0112 PE=3 SV=1
          Length = 233

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 4/48 (8%)

Query: 17 ARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          A+RP+    S  +L+AVSKTKP E I +AY  GQ  FGENYVQE +EK
Sbjct: 21 AKRPE----SAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEK 64


>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
          51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
          Length = 237

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 10 EKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          +K+E AC  + +    +  +L+AVSKTKP   I+ AY  GQ  FGENYVQE +EK
Sbjct: 12 QKIETAC--KEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEK 64


>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
          204508 / S288c) GN=YBL036C PE=1 SV=1
          Length = 257

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 26/40 (65%)

Query: 26 SRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKG 65
          S+  L+ VSK KP   I   Y+ G R FGENYVQEL+EK 
Sbjct: 40 SKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKA 79


>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
          PE=3 SV=1
          Length = 228

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 8  TLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
           LE++++AC R  +    ++  L+  SKT P E+I E YN G + +GEN VQE L+K
Sbjct: 10 VLERIQKACERAGRGENCAK--LLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKK 64


>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC
          15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3
          SV=1
          Length = 230

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 3  AAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELL 62
          A +   + +  QA  R P  +      L+AVSKTKP   + EA+  G R FGENY+QE L
Sbjct: 9  AKVAARIREAAQAAGRDPATVG-----LLAVSKTKPAAAVREAHAAGLRDFGENYLQEAL 63

Query: 63 EK 64
           K
Sbjct: 64 GK 65


>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC
          700392 / 26695) GN=HP_0395 PE=3 SV=1
          Length = 222

 Score = 39.3 bits (90), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 5  IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          I   + K+E+A   R    +    ++VAVSK    E I   YN  QR FGEN VQ+L  K
Sbjct: 8  IDALITKIEKA---RTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTK 64

Query: 65 GHDPE 69
           H  E
Sbjct: 65 MHSLE 69


>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
          GN=jhp_0986 PE=3 SV=1
          Length = 222

 Score = 38.5 bits (88), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 5  IKGTLEKVEQACARRPQELQWSR---PRLVAVSKTKPKELIIEAYNGGQRHFGENYVQEL 61
          I   + K+E+A       + +SR    ++VAVSK    E I   YN  QR FGEN VQ+L
Sbjct: 8  IDTLITKIEKA------RIAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDL 61

Query: 62 LEKGHDPE 69
            K H  E
Sbjct: 62 KIKMHSLE 69


>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
          pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
          Length = 223

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 5  IKGTLEKVEQACARRPQELQWS--RPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQE 60
          I+  ++K++Q      ++ + +  + +L+AVSK +    I +A   GQ  FGENYVQE
Sbjct: 4  IQKNIKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQE 61


>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
          Kazusa) GN=slr0556 PE=3 SV=1
          Length = 218

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query: 29 RLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          RLVAV+KTK    I  AY  G R F E+ +QE L K
Sbjct: 19 RLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPK 54


>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
          pisum (strain APS) GN=BU549 PE=3 SV=1
          Length = 200

 Score = 32.3 bits (72), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 30 LVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          ++AVSK +    I EA   G  +FGENY+QE L K
Sbjct: 6  IIAVSKNRNINNIEEAIRSGINNFGENYLQESLIK 40


>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
          graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
          Length = 229

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 27 RPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
          + +++AVSK +  + I  A + G   FGENYVQE ++K
Sbjct: 28 KIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDK 65


>sp|Q8ZX28|TPIS_PYRAE Triosephosphate isomerase OS=Pyrobaculum aerophilum (strain ATCC
           51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=tpiA
           PE=3 SV=1
          Length = 227

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 15  ACARRPQELQWSRPRLV----AVSKTKPKELIIEAYNGGQRHFGENYV--QELLEKGHDP 68
           A A  P  +    P L+    AVSK KP E ++E      RHF +  V     +E G D 
Sbjct: 130 AAALSPHAVAVEPPELIGTGRAVSKYKP-ETVVETVQLVGRHFPDVAVITGAGIESGEDV 188

Query: 69  EISIQLKSRGKTAVKEVVDERAP 91
           E +++L +RG       V  + P
Sbjct: 189 EAALKLGTRGVLLASAAVKAKDP 211


>sp|Q8DJ62|UREE_THEEB Urease accessory protein UreE OS=Thermosynechococcus elongatus
           (strain BP-1) GN=ureE PE=3 SV=1
          Length = 144

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 33  VSKTKPKELIIEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGKTAVKEV 85
           V  + P +L+  AY+ G RH       + L  G D  +   L+ RG T   EV
Sbjct: 79  VMASTPLDLLRAAYHLGNRHVPLEIHTDYLRLGADSVVQTMLEQRGLTVTFEV 131


>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa, isoform A OS=Drosophila
           melanogaster GN=vas PE=1 SV=3
          Length = 661

 Score = 30.4 bits (67), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 20  PQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQ 59
           P EL+  RP++V VS T  +EL I+ +N  ++   E+Y++
Sbjct: 311 PHELELGRPQVVIVSPT--RELAIQIFNEARKFAFESYLK 348


>sp|Q58724|MTM4_METJA Putative modification methylase MjaIVP OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=mjaIVMP PE=4 SV=1
          Length = 298

 Score = 30.0 bits (66), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 47  NGGQRHFGENYVQELLEKGHDPEISIQLKSRGKTAVKEVV 86
           NGG+R     + Q+LLE    P  S ++K + K  VK+++
Sbjct: 213 NGGRRGGRVAFTQKLLENAKIPTFSDEVKEKIKNIVKDII 252


>sp|Q6PIJ4|NFRKB_MOUSE Nuclear factor related to kappa-B-binding protein OS=Mus musculus
           GN=Nfrkb PE=2 SV=1
          Length = 1296

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 21  QELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGE--NYVQELLEKGH-DPEI 70
           + LQ   PR  A S  + +ELI+  ++G    FG   +  Q+L   GH +PE+
Sbjct: 68  EHLQQFLPRFPADSVEQQRELILALFSGENFRFGNPLHIAQKLFRDGHFNPEV 120


>sp|P17223|PRRC_ECOLX Anticodon nuclease OS=Escherichia coli GN=prrC PE=4 SV=1
          Length = 396

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 8  TLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNG-GQRHFGENYVQELLEKGH 66
          TL ++ Q  +  PQ+++ +  + V  ++  PK  +I A+NG G+     ++ Q L  K H
Sbjct: 4  TLSEIAQQLST-PQKVKKTVHKEVEATRAVPKVQLIYAFNGTGKTRLSRDFKQLLESKVH 62

Query: 67 DPE 69
          D E
Sbjct: 63 DGE 65


>sp|Q12UJ7|DHQS_METBU 3-dehydroquinate synthase OS=Methanococcoides burtonii (strain DSM
           6242) GN=Mbur_2000 PE=3 SV=2
          Length = 379

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 31  VAVSKTKPKELIIEAYNGGQRHFGENYVQELLEK 64
           ++V+  KP   ++  Y GG RHFG    + ++EK
Sbjct: 346 ISVADLKPGNEVMVYYEGGARHFGMKVEETIIEK 379


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.130    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,893,830
Number of Sequences: 539616
Number of extensions: 1443414
Number of successful extensions: 3100
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3069
Number of HSP's gapped (non-prelim): 41
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)