Query psy2327
Match_columns 97
No_of_seqs 141 out of 1049
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:47:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sy1_A UPF0001 protein YGGS; e 99.9 4.9E-26 1.7E-30 170.2 5.4 88 1-91 5-92 (245)
2 3r79_A Uncharacterized protein 99.9 5.9E-26 2E-30 170.2 5.7 86 1-91 6-92 (244)
3 1ct5_A Protein (yeast hypothet 99.9 5.4E-22 1.8E-26 148.6 7.0 84 1-91 14-99 (256)
4 3cpg_A Uncharacterized protein 99.5 1.6E-13 5.4E-18 102.9 7.6 88 2-91 26-129 (282)
5 3hur_A Alanine racemase; struc 98.2 2.2E-06 7.7E-11 67.5 6.0 74 5-90 16-95 (395)
6 3e5p_A Alanine racemase; ALR, 98.2 4.2E-06 1.4E-10 65.1 7.4 76 4-90 14-94 (371)
7 4ecl_A Serine racemase, vantg; 98.1 4.9E-06 1.7E-10 64.6 6.7 75 5-90 13-92 (374)
8 4a3q_A Alanine racemase 1; iso 98.0 8.4E-06 2.9E-10 63.8 6.5 74 5-90 15-93 (382)
9 3kw3_A Alanine racemase; niaid 98.0 8E-06 2.7E-10 63.8 5.7 75 5-90 27-106 (376)
10 1xfc_A Alanine racemase; alpha 97.8 2.3E-05 7.9E-10 60.2 5.6 74 5-90 18-96 (384)
11 3mub_A Alanine racemase; alpha 97.8 4E-05 1.4E-09 59.5 6.8 75 4-90 14-93 (367)
12 1vfs_A Alanine racemase; TIM-b 97.8 4.9E-05 1.7E-09 58.5 6.5 74 5-90 14-92 (386)
13 3co8_A Alanine racemase; prote 97.7 6.3E-05 2.2E-09 57.8 5.7 74 5-90 16-94 (380)
14 1rcq_A Catabolic alanine racem 97.6 3.7E-05 1.3E-09 58.4 4.1 73 5-90 10-87 (357)
15 2rjg_A Alanine racemase; alpha 97.6 4.4E-05 1.5E-09 58.9 4.1 74 5-90 30-107 (379)
16 2dy3_A Alanine racemase; alpha 97.6 0.00015 5.1E-09 55.0 6.4 56 28-89 27-87 (361)
17 2vd8_A Alanine racemase; pyrid 97.5 0.0002 6.8E-09 55.2 6.4 74 5-89 18-96 (391)
18 1bd0_A Alanine racemase; isome 97.3 0.00047 1.6E-08 53.2 6.0 73 5-89 14-92 (388)
19 3gwq_A D-serine deaminase; str 96.7 0.0021 7.1E-08 50.5 5.5 41 27-67 71-112 (426)
20 3llx_A Predicted amino acid al 96.7 0.0017 5.7E-08 49.8 4.5 41 27-67 39-80 (376)
21 3anu_A D-serine dehydratase; P 96.6 0.003 1E-07 47.9 5.3 41 27-67 37-78 (376)
22 1twi_A Diaminopimelate decarbo 96.6 0.0052 1.8E-07 47.6 6.5 74 1-87 40-116 (434)
23 2p3e_A Diaminopimelate decarbo 96.1 0.014 4.8E-07 44.8 6.7 69 5-85 41-110 (420)
24 2j66_A BTRK, decarboxylase; bu 92.3 0.2 7E-06 38.4 5.2 70 5-87 24-96 (428)
25 2qgh_A Diaminopimelate decarbo 90.5 0.41 1.4E-05 36.9 5.3 70 5-86 40-112 (425)
26 2o0t_A Diaminopimelate decarbo 88.2 0.54 1.8E-05 36.8 4.4 69 6-87 50-121 (467)
27 3kht_A Response regulator; PSI 48.6 20 0.00067 21.8 3.5 27 27-53 81-107 (144)
28 2pln_A HP1043, response regula 48.2 24 0.00084 21.2 3.9 27 27-53 86-112 (137)
29 3jte_A Response regulator rece 47.8 25 0.00084 21.3 3.9 27 27-53 77-103 (143)
30 3lua_A Response regulator rece 47.5 21 0.00073 21.5 3.5 27 27-53 81-107 (140)
31 3kto_A Response regulator rece 46.9 23 0.00078 21.4 3.6 27 27-53 80-106 (136)
32 3hdv_A Response regulator; PSI 46.9 27 0.00091 20.9 3.9 27 27-53 81-107 (136)
33 3hdg_A Uncharacterized protein 45.8 23 0.00079 21.2 3.5 27 27-53 79-105 (137)
34 1dbw_A Transcriptional regulat 45.1 25 0.00087 20.7 3.6 27 27-53 75-101 (126)
35 3gl9_A Response regulator; bet 44.0 26 0.00088 20.9 3.4 27 27-53 76-102 (122)
36 3cnb_A DNA-binding response re 43.6 32 0.0011 20.5 3.9 27 27-53 84-110 (143)
37 4e7p_A Response regulator; DNA 43.3 31 0.0011 21.2 3.9 27 27-53 94-120 (150)
38 1tmy_A CHEY protein, TMY; chem 43.2 28 0.00097 20.2 3.5 27 27-53 75-101 (120)
39 3crn_A Response regulator rece 43.1 31 0.001 20.7 3.7 27 27-53 75-101 (132)
40 1srr_A SPO0F, sporulation resp 42.9 32 0.0011 20.1 3.8 27 27-53 75-101 (124)
41 1zgz_A Torcad operon transcrip 42.9 32 0.0011 20.0 3.7 27 27-53 73-99 (122)
42 3b2n_A Uncharacterized protein 42.0 32 0.0011 20.6 3.7 27 27-53 77-103 (133)
43 1jbe_A Chemotaxis protein CHEY 42.0 30 0.001 20.3 3.5 27 27-53 79-105 (128)
44 3h1g_A Chemotaxis protein CHEY 41.6 54 0.0018 19.4 4.9 27 27-53 81-107 (129)
45 2qxy_A Response regulator; reg 41.4 32 0.0011 20.7 3.6 27 27-53 75-101 (142)
46 3heb_A Response regulator rece 40.8 30 0.001 21.2 3.5 27 27-53 89-115 (152)
47 3pa8_A Toxin B; CLAN CD cystei 40.7 11 0.00037 28.3 1.5 22 64-85 90-111 (254)
48 3gt7_A Sensor protein; structu 40.4 27 0.00093 21.7 3.2 27 27-53 81-107 (154)
49 3snk_A Response regulator CHEY 40.3 30 0.001 20.7 3.4 27 27-53 87-113 (135)
50 3eod_A Protein HNR; response r 40.2 30 0.001 20.4 3.4 27 27-53 79-105 (130)
51 2zay_A Response regulator rece 39.8 30 0.001 20.9 3.3 27 27-53 82-108 (147)
52 3hzh_A Chemotaxis response reg 38.7 34 0.0012 21.3 3.5 27 27-53 111-137 (157)
53 2r25_B Osmosensing histidine p 38.5 33 0.0011 20.7 3.3 27 27-53 81-107 (133)
54 2pl1_A Transcriptional regulat 38.0 39 0.0013 19.5 3.6 27 27-53 72-98 (121)
55 1zh2_A KDP operon transcriptio 37.9 35 0.0012 19.6 3.3 27 27-53 72-98 (121)
56 3cfy_A Putative LUXO repressor 37.8 45 0.0015 20.2 3.9 27 27-53 76-102 (137)
57 3cz5_A Two-component response 37.7 35 0.0012 20.9 3.5 27 27-53 79-105 (153)
58 2qvg_A Two component response 37.7 29 0.001 20.8 3.0 27 27-53 89-115 (143)
59 3eul_A Possible nitrate/nitrit 37.7 43 0.0015 20.5 3.9 27 27-53 89-115 (152)
60 1k68_A Phytochrome response re 37.6 31 0.0011 20.4 3.1 27 27-53 85-111 (140)
61 1k66_A Phytochrome response re 37.3 31 0.0011 20.7 3.1 27 27-53 92-118 (149)
62 3to5_A CHEY homolog; alpha(5)b 37.1 81 0.0028 20.2 5.4 27 27-53 87-113 (134)
63 3cg0_A Response regulator rece 37.1 33 0.0011 20.4 3.2 27 27-53 82-108 (140)
64 1qo0_D AMIR; binding protein, 36.9 37 0.0013 21.9 3.6 27 27-53 79-105 (196)
65 3jqo_C TRAN protein; helical o 36.5 12 0.0004 19.9 0.8 14 29-42 15-28 (34)
66 1i3c_A Response regulator RCP1 36.1 40 0.0014 20.7 3.5 27 27-53 91-117 (149)
67 1xhf_A DYE resistance, aerobic 35.6 44 0.0015 19.4 3.5 27 27-53 74-100 (123)
68 3rqi_A Response regulator prot 35.4 43 0.0015 21.6 3.7 27 27-53 79-105 (184)
69 4dad_A Putative pilus assembly 35.2 30 0.001 21.0 2.8 27 27-53 95-121 (146)
70 1p6q_A CHEY2; chemotaxis, sign 35.1 45 0.0015 19.5 3.5 27 27-53 81-107 (129)
71 3f6p_A Transcriptional regulat 34.6 40 0.0014 19.8 3.2 27 27-53 73-99 (120)
72 2yxx_A Diaminopimelate decarbo 34.5 1.2E+02 0.004 22.5 6.4 55 5-64 20-75 (386)
73 2k6g_A Replication factor C su 34.0 45 0.0015 21.2 3.5 39 27-65 70-108 (109)
74 1id3_B Histone H4; nucleosome 33.2 72 0.0025 20.1 4.4 20 35-54 79-99 (102)
75 1dz3_A Stage 0 sporulation pro 32.8 48 0.0016 19.6 3.4 27 27-53 77-103 (130)
76 2a9o_A Response regulator; ess 32.7 48 0.0016 19.0 3.3 27 27-53 72-98 (120)
77 3hv2_A Response regulator/HD d 32.6 58 0.002 19.9 3.9 26 27-52 86-112 (153)
78 2qr3_A Two-component system re 32.3 33 0.0011 20.4 2.6 27 27-53 80-106 (140)
79 3mm4_A Histidine kinase homolo 31.7 1.1E+02 0.0038 20.1 5.4 27 27-53 151-178 (206)
80 3t6k_A Response regulator rece 31.7 48 0.0016 20.0 3.3 27 27-53 78-104 (136)
81 1qkk_A DCTD, C4-dicarboxylate 31.1 38 0.0013 20.8 2.8 27 27-53 75-101 (155)
82 2qzj_A Two-component response 30.5 54 0.0019 19.7 3.4 26 28-53 76-101 (136)
83 2ly8_A Budding yeast chaperone 30.3 1.2E+02 0.0041 20.0 5.2 20 35-54 98-118 (121)
84 3m6m_D Sensory/regulatory prot 29.8 96 0.0033 18.8 5.6 27 27-53 90-116 (143)
85 2hqr_A Putative transcriptiona 29.6 59 0.002 21.4 3.7 27 27-53 68-94 (223)
86 2qsj_A DNA-binding response re 29.3 39 0.0013 20.7 2.6 27 27-53 78-104 (154)
87 3ho6_A Toxin A; inositol phosp 29.1 26 0.00087 26.5 1.9 24 64-87 93-116 (267)
88 1dcf_A ETR1 protein; beta-alph 28.9 65 0.0022 19.1 3.5 26 28-53 84-109 (136)
89 3f6c_A Positive transcription 28.2 33 0.0011 20.3 2.0 27 27-53 74-100 (134)
90 1tzy_D Histone H4-VI; histone- 27.4 93 0.0032 19.5 4.2 20 35-54 80-100 (103)
91 2ebu_A Replication factor C su 26.8 67 0.0023 20.6 3.4 41 27-67 60-100 (112)
92 2lti_A Astexin1; sidechain-TO- 26.8 17 0.00059 17.8 0.4 13 47-59 9-21 (26)
93 1p2f_A Response regulator; DRR 26.4 70 0.0024 20.9 3.6 27 27-53 71-97 (220)
94 2yfw_B Histone H4, H4; cell cy 25.8 93 0.0032 19.5 3.9 20 35-54 80-100 (103)
95 1a04_A Nitrate/nitrite respons 25.5 85 0.0029 20.4 3.9 27 27-53 79-105 (215)
96 2hue_C Histone H4; mini beta s 24.6 62 0.0021 19.6 2.8 20 35-54 61-81 (84)
97 1mb3_A Cell division response 24.1 38 0.0013 19.7 1.7 27 27-53 75-101 (124)
98 3kcn_A Adenylate cyclase homol 23.6 66 0.0023 19.6 2.9 26 27-52 76-102 (151)
99 3c3w_A Two component transcrip 23.4 72 0.0025 21.2 3.2 27 27-53 75-101 (225)
100 2qwo_B Putative tyrosine-prote 23.1 27 0.00091 21.9 0.9 20 28-47 36-55 (92)
101 1gp8_A Protein (scaffolding pr 21.7 82 0.0028 17.1 2.6 17 2-18 7-23 (40)
102 3ilh_A Two component response 21.6 1.3E+02 0.0044 17.7 3.9 26 27-52 92-118 (146)
103 2rjn_A Response regulator rece 21.6 81 0.0028 19.2 3.0 27 27-53 79-106 (154)
104 3q9s_A DNA-binding response re 21.4 84 0.0029 21.5 3.3 27 27-53 108-134 (249)
105 2nva_A Arginine decarboxylase, 20.7 2.5E+02 0.0086 20.5 6.2 70 5-86 24-94 (372)
106 3he4_B Synzip5; heterodimeric 20.6 26 0.0009 19.3 0.4 14 55-68 9-22 (46)
107 3bre_A Probable two-component 20.2 97 0.0033 22.0 3.5 27 27-53 93-119 (358)
No 1
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=99.92 E-value=4.9e-26 Score=170.17 Aligned_cols=88 Identities=28% Similarity=0.354 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHHHHcCCccccccchHHHHhhcCCcccccccCCceEE
Q psy2327 1 MEAAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGKT 80 (97)
Q Consensus 1 i~~nl~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh 80 (97)
|.+||+.|+++|.++|.++||+++ +|+|+||||+++++.|++++++|++.|||||+||+.+|.+.+.. ..+|+|.||
T Consensus 5 i~~nl~~i~~~i~~a~~~~~r~~~--~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~-~~~~~i~w~ 81 (245)
T 3sy1_A 5 IAHNLAQVRDKISAAATRCGRSPE--EITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQE-LGVTGLEWN 81 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGG--GCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHH-HTCCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC--CcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhh-ccCCCeEEe
Confidence 468999999999999999999864 79999999999999999999999999999999999999876421 113689999
Q ss_pred EeeecccCCCC
Q psy2327 81 AVKEVVDERAP 91 (97)
Q Consensus 81 ~IG~lq~~~~~ 91 (97)
|||+||+||++
T Consensus 82 ~iG~lq~nk~~ 92 (245)
T 3sy1_A 82 FAGPLQSNKSR 92 (245)
T ss_dssp ECSCCCGGGHH
T ss_pred ecCCCChHHHH
Confidence 99999999864
No 2
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=99.92 E-value=5.9e-26 Score=170.22 Aligned_cols=86 Identities=27% Similarity=0.291 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHHHHcCCccccccchHHHHhhcCCcccccc-cCCceE
Q psy2327 1 MEAAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKGHDPEISIQ-LKSRGK 79 (97)
Q Consensus 1 i~~nl~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~-~~~i~w 79 (97)
|.+||+.|+++|.++|.++||+++ +|+|+||||+++++.|++++++|++.|||||+||+.+|.+.+ .+ .|+|.|
T Consensus 6 i~~nl~~v~~~i~~a~~~~~r~~~--~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~---~~~~~~i~w 80 (244)
T 3r79_A 6 IEARLEDVRQRIADVAEKSGRKAA--DVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPAL---KEKTSDIEL 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGG--GSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHH---HHHSTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC--CcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhc---cccCCCeEE
Confidence 468999999999999999999864 799999999999999999999999999999999999998663 22 468999
Q ss_pred EEeeecccCCCC
Q psy2327 80 TAVKEVVDERAP 91 (97)
Q Consensus 80 h~IG~lq~~~~~ 91 (97)
||||+||+||++
T Consensus 81 h~iG~lq~nk~~ 92 (244)
T 3r79_A 81 HLIGPLQSNKAA 92 (244)
T ss_dssp EECSCCCGGGHH
T ss_pred EecCCCCHHHHH
Confidence 999999999864
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=99.86 E-value=5.4e-22 Score=148.59 Aligned_cols=84 Identities=29% Similarity=0.314 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC--CCCCCcEEEEeccCCCHHHHHHHHHcCCccccccchHHHHhhcCCcccccccCCce
Q psy2327 1 MEAAIKGTLEKVEQACARRPQE--LQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRG 78 (97)
Q Consensus 1 i~~nl~~I~~rI~~a~~~~~r~--~~~~~V~LiAVSK~~~~e~I~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~ 78 (97)
|.+||+.|+++|..++++++|+ ++ +|+|+||+|+++++.|..++++|++.|||||+||+.+|.+.+ .. +|.
T Consensus 14 i~~nl~~v~~~i~~~~~~~~r~~~~~--~v~l~aVvK~hg~~~i~~~~~aG~~~fgva~vqEa~~~r~~~---~~--~l~ 86 (256)
T 1ct5_A 14 LIAQYESVREVVNAEAKNVHVNENAS--KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLL---PD--DIK 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHS---CT--TCE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCC--CCEEEEEECCCCHHHHHHHHHcCCCEEEEEcHHHHHHHHHhc---cc--Cee
Confidence 4679999999999999999886 43 799999999999999999999999999999999999998763 22 599
Q ss_pred EEEeeecccCCCC
Q psy2327 79 KTAVKEVVDERAP 91 (97)
Q Consensus 79 wh~IG~lq~~~~~ 91 (97)
|||||+||+||.+
T Consensus 87 ~h~iG~lq~nk~~ 99 (256)
T 1ct5_A 87 WHFIGGLQTNKCK 99 (256)
T ss_dssp EEECSCCCGGGHH
T ss_pred EeecCCCCHHHHH
Confidence 9999999999864
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.45 E-value=1.6e-13 Score=102.91 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHHHHcCCccccccchHHHHhhcCCcccc----c-----
Q psy2327 2 EAAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKGHDPEIS----I----- 72 (97)
Q Consensus 2 ~~nl~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a~~~G~~~fGENrvQEl~~K~~~~~~~----~----- 72 (97)
..||..|+.+|...++.+++.+. +++|+||+|+++...|..++++|++.||+|++||+..+.+.+... .
T Consensus 26 ~idl~ai~~Ni~~~~~~~~~~~~--~~~l~avvK~hg~~~va~~~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~ 103 (282)
T 3cpg_A 26 TDGVHRVLDRIAAAEEQAGREAG--SVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTT--SSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CcEEEEEECCCCHHHHHHHHHCCCCEEEEEeHHHHHHHHHhhhhhcccccccccc
Confidence 46899999999999888877543 699999999999999999999999999999999999988652110 0
Q ss_pred -c------cCCceEEEeeecccCCCC
Q psy2327 73 -Q------LKSRGKTAVKEVVDERAP 91 (97)
Q Consensus 73 -~------~~~i~wh~IG~lq~~~~~ 91 (97)
. .+.|.|||||++|+|+.+
T Consensus 104 ~G~~~d~~~~~i~~~~iG~~~~~~~~ 129 (282)
T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQSNKIG 129 (282)
T ss_dssp C------CCEEECEEECSCCCGGGHH
T ss_pred ccccccccccceeeeecChhHHHHHH
Confidence 0 136899999999998753
No 5
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=98.19 E-value=2.2e-06 Score=67.52 Aligned_cols=74 Identities=8% Similarity=-0.063 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHH-HHHHHc-CCccccccchHHHHhhcCCcccccccCCce
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELI-IEAYNG-GQRHFGENYVQELLEKGHDPEISIQLKSRG 78 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I-~~a~~~-G~~~fGENrvQEl~~K~~~~~~~~~~~~i~ 78 (97)
+..++.+++...+. + + +++|+||+|. +...+| +.++++ |++.||+|++||+.++.+.. .+..
T Consensus 16 l~al~~N~~~l~~~-~--~---~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aG------i~~~ 83 (395)
T 3hur_A 16 LDAAAHNLQEIREW-T--K---AKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQAD------LTLP 83 (395)
T ss_dssp HHHHHHHHHHHHHH-H--T---CSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTT------CCSC
T ss_pred HHHHHHHHHHHHhc-C--C---CCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcC------CCCC
Confidence 45566666554444 1 1 5899999998 777776 567789 99999999999999876542 3456
Q ss_pred EEEeeecccCCC
Q psy2327 79 KTAVKEVVDERA 90 (97)
Q Consensus 79 wh~IG~lq~~~~ 90 (97)
++++|+++.++.
T Consensus 84 Ilvlg~~~~~~~ 95 (395)
T 3hur_A 84 IWVLGAWDYSDL 95 (395)
T ss_dssp EEESSCCCGGGH
T ss_pred EEEEcCCCHHHH
Confidence 889999988764
No 6
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=98.18 E-value=4.2e-06 Score=65.14 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHH-HHHHHcCCccccccchHHHHhhcCCcccccccCCce
Q psy2327 4 AIKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELI-IEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRG 78 (97)
Q Consensus 4 nl~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I-~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~ 78 (97)
++..++.+++...+..+ . +++|++|+|+ ++..+| +.++++|++.||+++++|+..+.+.. .+..
T Consensus 14 dl~al~~N~~~l~~~~~--~---~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G------~~~~ 82 (371)
T 3e5p_A 14 DTQAITENVQKECQRLP--E---GTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAG------VQDP 82 (371)
T ss_dssp CHHHHHHHHHHHHHSSC--S---SSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTT------CCSC
T ss_pred EHHHHHHHHHHHHHhcC--C---CCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcC------CCCC
Confidence 35667777776655553 1 5899999999 998888 46778999999999999999887542 2345
Q ss_pred EEEeeecccCCC
Q psy2327 79 KTAVKEVVDERA 90 (97)
Q Consensus 79 wh~IG~lq~~~~ 90 (97)
+.++|+++.++.
T Consensus 83 Ilvlg~~~~~~~ 94 (371)
T 3e5p_A 83 ILILSVVDLAYV 94 (371)
T ss_dssp EEEEEECCGGGH
T ss_pred EEEEcCCCHHHH
Confidence 778899887753
No 7
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=98.13 E-value=4.9e-06 Score=64.65 Aligned_cols=75 Identities=15% Similarity=0.031 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHH-HHHcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIE-AYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~-a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..+..+++...+..+ + +++|++|+|+ ++..+|.. ++++|++.||+|+++|+..+.+.. .+..+
T Consensus 13 l~al~~N~~~l~~~~~---~--~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G------~~~~i 81 (374)
T 4ecl_A 13 LNNLEHNVNTLQKAMS---P--KCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYG------ISSEI 81 (374)
T ss_dssp HHHHHHHHHHHHHTSC---T--TCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTT------CCSEE
T ss_pred HHHHHHHHHHHHHhcC---C--CCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcC------CCCCE
Confidence 5566666665544442 1 5899999999 89888854 568999999999999999876542 24467
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
+++|+++.++.
T Consensus 82 lvlg~~~~~~~ 92 (374)
T 4ecl_A 82 LILGYTSPSRA 92 (374)
T ss_dssp EECSCCCGGGH
T ss_pred EEEeCCCHHHH
Confidence 78899987764
No 8
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=98.04 E-value=8.4e-06 Score=63.80 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHH-HHHHHcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELI-IEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I-~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..++.+++ ..+..+ + +++|+||+|+ +...+| +.++++|++.||+++++|+....+.. .+..+
T Consensus 15 l~al~~N~~-l~~~~~--~---~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aG------i~~~i 82 (382)
T 4a3q_A 15 LNAVASNFK-VFSTLH--P---NKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHG------ITAKI 82 (382)
T ss_dssp HHHHHHHHH-HHHHHC--T---TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTT------CCSEE
T ss_pred HHHHHHHHH-HHhhcC--C---CCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCC------CCCCE
Confidence 455555555 444332 1 5899999999 888887 56778999999999999999876542 24567
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
+++|+++.++.
T Consensus 83 lvlg~~~~~~~ 93 (382)
T 4a3q_A 83 LVLGVLPAKDI 93 (382)
T ss_dssp EECSCCCGGGH
T ss_pred EEEeCCCHHHH
Confidence 78899887653
No 9
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=98.00 E-value=8e-06 Score=63.80 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHH-HHHHHcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELI-IEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I-~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..++.+++...+..+ +++|+||+|. +...+| +.++++|++.||+|++||+..+.+.. ..+..+
T Consensus 27 l~al~~N~~~l~~~~~------~~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag-----~~~~~i 95 (376)
T 3kw3_A 27 VRAIVANYRTLAQHVA------PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVL-----PENVMI 95 (376)
T ss_dssp HHHHHHHHHHHHHHHT------TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHS-----CSSCEE
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcC-----CCCCCE
Confidence 4555666655544432 2699999998 666665 67788999999999999999876431 024578
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
+++|+++.++.
T Consensus 96 lvl~~~~~~~~ 106 (376)
T 3kw3_A 96 ALLNGFPHKAE 106 (376)
T ss_dssp EETTCCCTTCH
T ss_pred EEEeCCCHHHH
Confidence 99999987764
No 10
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=97.83 E-value=2.3e-05 Score=60.19 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHHH-HcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEAY-NGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a~-~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..|+++++...+..+ +++|++|+|+ ++...|..++ ++|++.||+++++|+......- .+-.+
T Consensus 18 l~~i~~N~~~l~~~~~------~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G------~~~~I 85 (384)
T 1xfc_A 18 LGAIEHNVRVLREHAG------HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADG------ITAPV 85 (384)
T ss_dssp HHHHHHHHHHHHHHHT------TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTT------CCSCE
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcC------CCCCE
Confidence 4555666655544432 3799999999 9999998875 8999999999999999987541 12246
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
.|+|+++.++.
T Consensus 86 l~~g~~~~~~~ 96 (384)
T 1xfc_A 86 LAWLHPPGIDF 96 (384)
T ss_dssp EECCCCTTCCC
T ss_pred EEEcCCCHHHH
Confidence 79999887764
No 11
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=97.82 E-value=4e-05 Score=59.51 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHHH-HcCCccccccchHHHHhhcCCcccccccCCce
Q psy2327 4 AIKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEAY-NGGQRHFGENYVQELLEKGHDPEISIQLKSRG 78 (97)
Q Consensus 4 nl~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a~-~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~ 78 (97)
++..++.+++...+..+ . +++|+||+|+ ++..+|..++ ++ ++.||+++++|+....+.. .+..
T Consensus 14 dl~al~~N~~~l~~~~~--~---~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G------~~~~ 81 (367)
T 3mub_A 14 HLGAIRQNIQQMGAHIP--Q---GTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAG------LSKP 81 (367)
T ss_dssp CHHHHHHHHHHHHHTSC--T---TCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTT------CCSC
T ss_pred eHHHHHHHHHHHHHhCC--C---CCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcC------CCCC
Confidence 35667777776665553 1 5899999999 9999997655 66 9999999999999876442 2446
Q ss_pred EEEeeecccCCC
Q psy2327 79 KTAVKEVVDERA 90 (97)
Q Consensus 79 wh~IG~lq~~~~ 90 (97)
++++|+++.++.
T Consensus 82 ilvlg~~~~~~~ 93 (367)
T 3mub_A 82 ILILGVSEIEAV 93 (367)
T ss_dssp EEEEEECCGGGH
T ss_pred EEEEcCCCHHHH
Confidence 788899987764
No 12
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=97.77 E-value=4.9e-05 Score=58.50 Aligned_cols=74 Identities=19% Similarity=0.078 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHH-HHcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEA-YNGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a-~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..|+++++...+.. + +++|++|+|+ ++...|..+ .++|++.||+|+++|+..+.+.- .+-..
T Consensus 14 l~~i~~N~~~l~~~~----~--~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G------~~~~i 81 (386)
T 1vfs_A 14 LDAVRANVRALRARA----P--RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAG------IQGRI 81 (386)
T ss_dssp HHHHHHHHHHHHTTS----T--TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTT------CCSEE
T ss_pred HHHHHHHHHHHHHhC----C--CcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcC------CCCCE
Confidence 456666666554433 1 5899999999 998888875 58999999999999999987541 12234
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
.++|++++++.
T Consensus 82 l~~~~~~~~~~ 92 (386)
T 1vfs_A 82 MCWLWTPGGPW 92 (386)
T ss_dssp EECCCCTTCCH
T ss_pred EEECCCCHHHH
Confidence 58899887653
No 13
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=97.67 E-value=6.3e-05 Score=57.85 Aligned_cols=74 Identities=8% Similarity=-0.111 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHHH-HcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEAY-NGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a~-~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..++++++...+.. + +++|++|+|+ ++...|..++ ++|++.||+++++|+..+.+.- .+...
T Consensus 16 l~~l~~N~~~l~~~~---~---~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG------~~~~i 83 (380)
T 3co8_A 16 KSSLAYNVQYTKQVS---G---AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAG------IDDFI 83 (380)
T ss_dssp HHHHHHHHHHHHHHH---C---CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTT------CCCCE
T ss_pred HHHHHHHHHHHHHhC---C---CcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcC------CCCCE
Confidence 344455554443333 1 4799999999 9999888855 8999999999999999887541 11123
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
.++|+++.++.
T Consensus 84 l~~g~~~~~~~ 94 (380)
T 3co8_A 84 LILGPIDVKYA 94 (380)
T ss_dssp EECSCCCGGGH
T ss_pred EEECCCCHHHH
Confidence 47799887753
No 14
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=97.64 E-value=3.7e-05 Score=58.39 Aligned_cols=73 Identities=15% Similarity=-0.015 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHHH-HcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEAY-NGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a~-~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..++++++...+. + +++|++|+|+ ++...|..++ ++ .+.||+|+++|+..+.+.-. . ++|.
T Consensus 10 l~~l~~N~~~l~~~----~---~~~l~~vvKanaYG~g~~~i~~~l~~~-~~~~~va~~~Ea~~~~~~G~--~--~~Il- 76 (357)
T 1rcq_A 10 LQALRHNYRLAREA----T---GARALAVIKADAYGHGAVRCAEALAAE-ADGFAVACIEEGLELREAGI--R--QPIL- 76 (357)
T ss_dssp HHHHHHHHHHHHHH----H---CSEEEEECHHHHHTTCHHHHHHHHTTT-CSEEEESSHHHHHHHHHTTC--C--SCEE-
T ss_pred HHHHHHHHHHHHhC----C---CCeEEEEEEeccccCCHHHHHHHHHHh-CCEEEEccHHHHHHHHhCCc--C--CCEE-
Confidence 44555555544333 1 4799999999 9999999877 66 89999999999999875421 1 2455
Q ss_pred EEeeecccCCC
Q psy2327 80 TAVKEVVDERA 90 (97)
Q Consensus 80 h~IG~lq~~~~ 90 (97)
||+|+++.++.
T Consensus 77 ~~~g~~~~~~~ 87 (357)
T 1rcq_A 77 LLEGFFEASEL 87 (357)
T ss_dssp ETTCCSSGGGH
T ss_pred EEeCCCCHHHH
Confidence 68999888764
No 15
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=97.61 E-value=4.4e-05 Score=58.86 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHHHHcCCccccccchHHHHhhcCCcccccccCCceEE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGKT 80 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh 80 (97)
+..++++++...+..+ +++|++|+|+ ++...|..++.. .+.||+|+++|+..+.+.- .. ++|. +
T Consensus 30 l~al~~N~~~l~~~~~------~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G--~~--~~Il-~ 97 (379)
T 2rjg_A 30 RRALRHNLQRLRELAP------ASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGG--IT--KPVL-L 97 (379)
T ss_dssp HHHHHHHHHHHHHHST------TSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTT--CC--SCEE-E
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCC--cC--CCEE-E
Confidence 4566666666555541 4799999999 999999999988 8999999999999987541 00 2454 5
Q ss_pred EeeecccCCC
Q psy2327 81 AVKEVVDERA 90 (97)
Q Consensus 81 ~IG~lq~~~~ 90 (97)
|+|+++.++.
T Consensus 98 ~~g~~~~~~~ 107 (379)
T 2rjg_A 98 LEGFFDARDL 107 (379)
T ss_dssp TTCCSCGGGH
T ss_pred EECCCCHHHH
Confidence 8899887764
No 16
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=97.56 E-value=0.00015 Score=55.02 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=45.5
Q ss_pred cEEEEeccC----CCHHHHHHHH-HcCCccccccchHHHHhhcCCcccccccCCceEEEeeecccCC
Q psy2327 28 PRLVAVSKT----KPKELIIEAY-NGGQRHFGENYVQELLEKGHDPEISIQLKSRGKTAVKEVVDER 89 (97)
Q Consensus 28 V~LiAVSK~----~~~e~I~~a~-~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh~IG~lq~~~ 89 (97)
++|++|+|+ ++...|..++ ++|++.||+++++|+....+.- .+...+++|+++.++
T Consensus 27 ~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G------~~~~il~~~~~~~~~ 87 (361)
T 2dy3_A 27 AKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIG------ISQEVLCWIWTPEQD 87 (361)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTT------CCSEEEECCCCTTSC
T ss_pred cEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcC------CCCCEEEECCCCHHH
Confidence 699999999 9999988874 8899999999999999987541 123467888877665
No 17
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=97.49 E-value=0.0002 Score=55.24 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccC----CCHHHHHHH-HHcCCccccccchHHHHhhcCCcccccccCCceE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKT----KPKELIIEA-YNGGQRHFGENYVQELLEKGHDPEISIQLKSRGK 79 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~----~~~e~I~~a-~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~w 79 (97)
+..|+.+++...+..+. +++|++|+|+ ++...|..+ .++|++.||+++++|+....+.- .+-..
T Consensus 18 l~ai~~N~~~l~~~~~~-----~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G------~~~~i 86 (391)
T 2vd8_A 18 LDAIYNNVTHIXEFIPS-----DVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAG------ITAPI 86 (391)
T ss_dssp HHHHHHHHHHHHHHSCT-----TCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTT------CCSCE
T ss_pred HHHHHHHHHHHHHhcCC-----CCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcC------CCCce
Confidence 45566666655444421 4799999999 898888875 58999999999999999887541 11123
Q ss_pred EEeeecccCC
Q psy2327 80 TAVKEVVDER 89 (97)
Q Consensus 80 h~IG~lq~~~ 89 (97)
.++|+++.++
T Consensus 87 l~~g~~~~~~ 96 (391)
T 2vd8_A 87 LVLGPSPPRD 96 (391)
T ss_dssp EECSCCCGGG
T ss_pred EEecCCChHH
Confidence 3668887765
No 18
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=97.27 E-value=0.00047 Score=53.24 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCc-EEEEeccC----CCHHHHHHH-HHcCCccccccchHHHHhhcCCcccccccCCce
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRP-RLVAVSKT----KPKELIIEA-YNGGQRHFGENYVQELLEKGHDPEISIQLKSRG 78 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V-~LiAVSK~----~~~e~I~~a-~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~ 78 (97)
+..|+.+++...+.. + ++ +|++|+|+ ++...|..+ .++|++.||.++++|+......- . +-.
T Consensus 14 l~ai~~N~~~l~~~~---~---~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG-----~-~~~ 81 (388)
T 1bd0_A 14 LDAIYDNVENLRRLL---P---DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKG-----I-EAP 81 (388)
T ss_dssp HHHHHHHHHHHHHHS---C---TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTT-----C-CSC
T ss_pred HHHHHHHHHHHHHhC---C---CCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCC-----c-CCC
Confidence 455666666554444 1 47 99999999 999999875 48999999999999999887541 1 112
Q ss_pred EEEeeecccCC
Q psy2327 79 KTAVKEVVDER 89 (97)
Q Consensus 79 wh~IG~lq~~~ 89 (97)
..++|+++.++
T Consensus 82 Il~~g~~~~~~ 92 (388)
T 1bd0_A 82 ILVLGASRPAD 92 (388)
T ss_dssp EEECSCCCGGG
T ss_pred EEEECCCCHHH
Confidence 44778877664
No 19
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=96.74 E-value=0.0021 Score=50.53 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=35.5
Q ss_pred CcEEEEeccCCCHHHH-HHHHHcCCccccccchHHHHhhcCC
Q psy2327 27 RPRLVAVSKTKPKELI-IEAYNGGQRHFGENYVQELLEKGHD 67 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I-~~a~~~G~~~fGENrvQEl~~K~~~ 67 (97)
+++|.+|+|++...+| +.++++|...|+.++++|+......
T Consensus 71 gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~ 112 (426)
T 3gwq_A 71 GVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHG 112 (426)
T ss_dssp CCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHT
T ss_pred CCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHC
Confidence 5799999999987777 5578899999999999999987643
No 20
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=96.68 E-value=0.0017 Score=49.77 Aligned_cols=41 Identities=10% Similarity=-0.131 Sum_probs=34.8
Q ss_pred CcEEEEeccCCCHHHHH-HHHHcCCccccccchHHHHhhcCC
Q psy2327 27 RPRLVAVSKTKPKELII-EAYNGGQRHFGENYVQELLEKGHD 67 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~-~a~~~G~~~fGENrvQEl~~K~~~ 67 (97)
+++|.+|+|+++..+|. .++++|...||.++++|+....+.
T Consensus 39 ~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~ 80 (376)
T 3llx_A 39 GSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKA 80 (376)
T ss_dssp TCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHT
T ss_pred CCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhC
Confidence 47899999999977775 567899999999999999987643
No 21
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=96.60 E-value=0.003 Score=47.87 Aligned_cols=41 Identities=17% Similarity=-0.070 Sum_probs=36.1
Q ss_pred CcEEEEeccCCCHHHHHHHH-HcCCccccccchHHHHhhcCC
Q psy2327 27 RPRLVAVSKTKPKELIIEAY-NGGQRHFGENYVQELLEKGHD 67 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~-~~G~~~fGENrvQEl~~K~~~ 67 (97)
.++|.+|+|+++...|..++ ++|.+.|+.++++|+......
T Consensus 37 ~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~ 78 (376)
T 3anu_A 37 GVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADG 78 (376)
T ss_dssp TCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHT
T ss_pred CCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHC
Confidence 47999999999988888876 689999999999999987644
No 22
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=96.56 E-value=0.0052 Score=47.56 Aligned_cols=74 Identities=7% Similarity=-0.086 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHH-HHcCC--ccccccchHHHHhhcCCcccccccCCc
Q psy2327 1 MEAAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEA-YNGGQ--RHFGENYVQELLEKGHDPEISIQLKSR 77 (97)
Q Consensus 1 i~~nl~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a-~~~G~--~~fGENrvQEl~~K~~~~~~~~~~~~i 77 (97)
|.+|++.+++.+..++.+.+. ++++++|+|..+...|..+ .++|. ..++++-++++++.- .++.
T Consensus 40 l~~n~~~l~~~~~~a~~~~~~-----~~~~~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G--------~~~~ 106 (434)
T 1twi_A 40 IKINYNRYIEAFKRWEEETGK-----EFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSN--------VPSK 106 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-----CEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTT--------CCGG
T ss_pred HHHHHHHHHHhhhhhhcccCC-----CeEEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHCC--------CCCC
Confidence 356788888877766666531 5899999999998888885 47886 555555455444321 1235
Q ss_pred eEEEeeeccc
Q psy2327 78 GKTAVKEVVD 87 (97)
Q Consensus 78 ~wh~IG~lq~ 87 (97)
.|+|+|++.+
T Consensus 107 ~I~~~g~~k~ 116 (434)
T 1twi_A 107 KIVFNGNCKT 116 (434)
T ss_dssp GEEECCSSCC
T ss_pred cEEEECCCCC
Confidence 7999999753
No 23
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=96.12 E-value=0.014 Score=44.84 Aligned_cols=69 Identities=10% Similarity=-0.137 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHH-HHHHHcCCccccccchHHHHhhcCCcccccccCCceEEEee
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELI-IEAYNGGQRHFGENYVQELLEKGHDPEISIQLKSRGKTAVK 83 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I-~~a~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh~IG 83 (97)
+..|+++++...+..+ .+++.+|+|..+...| +.+.++|. .|+.+.++|+......- .+...|+|.|
T Consensus 41 l~~l~~N~~~l~~~~~------~~~l~~vvKan~~~~v~~~l~~~G~-~~~vas~~E~~~~~~~G-----~~~~~Il~~g 108 (420)
T 2p3e_A 41 SNFIKERFEAYRKAFP------DALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLAKKAG-----IPPERIVYAG 108 (420)
T ss_dssp HHHHHHHHHHHHHHST------TSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTT-----CCGGGEEECS
T ss_pred HHHHHHHHHHHHHhCC------cCeEEEEEecCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcC-----CChhHEEEeC
Confidence 4556666665544442 3699999999998887 56778999 89999999999876441 1223599999
Q ss_pred ec
Q psy2327 84 EV 85 (97)
Q Consensus 84 ~l 85 (97)
++
T Consensus 109 ~~ 110 (420)
T 2p3e_A 109 VG 110 (420)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 24
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=92.30 E-value=0.2 Score=38.43 Aligned_cols=70 Identities=7% Similarity=-0.079 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHHH-Hc--CCccccccchHHHHhhcCCcccccccCCceEEE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAY-NG--GQRHFGENYVQELLEKGHDPEISIQLKSRGKTA 81 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a~-~~--G~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh~ 81 (97)
+..|+++++...+..+ + .+++++|+|..+...|..++ ++ |......+.++.+++.- .+...|+|
T Consensus 24 ~~~l~~n~~~l~~~~~---~--~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G--------~~~~~I~~ 90 (428)
T 2j66_A 24 GDFIEAHYRQLRSRTN---P--AIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAG--------FSAENIIF 90 (428)
T ss_dssp HHHHHHHHHHHHHTSC---T--TEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTT--------CCGGGEEE
T ss_pred HHHHHHHHHHHHHhcC---C--CcEEEEEeeeCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcC--------CCcCeEEE
Confidence 4556666665544432 1 58999999999988888776 34 45566666677666543 12356999
Q ss_pred eeeccc
Q psy2327 82 VKEVVD 87 (97)
Q Consensus 82 IG~lq~ 87 (97)
+|++++
T Consensus 91 ~g~~k~ 96 (428)
T 2j66_A 91 SGPGKK 96 (428)
T ss_dssp CCSCCC
T ss_pred eCCCCC
Confidence 999876
No 25
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=90.53 E-value=0.41 Score=36.86 Aligned_cols=70 Identities=9% Similarity=-0.073 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHHH-HcC--CccccccchHHHHhhcCCcccccccCCceEEE
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAY-NGG--QRHFGENYVQELLEKGHDPEISIQLKSRGKTA 81 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a~-~~G--~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh~ 81 (97)
+..|+++++...+..++. ++++.+|+|..+...|..++ ++| ......+.+++++++- + +...|+|
T Consensus 40 l~~i~~N~~~l~~~~~~~----~~~l~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G--~------~~~~i~~ 107 (425)
T 2qgh_A 40 FDKIKQAFLNYKEAFKGR----KSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAG--I------KPYRIVF 107 (425)
T ss_dssp HHHHHHHHHHHHHTTCSS----CEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTT--C------CGGGEEE
T ss_pred HHHHHHHHHHHHHhcCcC----CCEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcC--C------ChhHEEE
Confidence 456666666554444221 57999999999988887776 654 5666677777777652 1 2356899
Q ss_pred eeecc
Q psy2327 82 VKEVV 86 (97)
Q Consensus 82 IG~lq 86 (97)
.|+..
T Consensus 108 ~g~~k 112 (425)
T 2qgh_A 108 SGVGK 112 (425)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 99764
No 26
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=88.21 E-value=0.54 Score=36.84 Aligned_cols=69 Identities=7% Similarity=-0.100 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHHH-HcC--CccccccchHHHHhhcCCcccccccCCceEEEe
Q psy2327 6 KGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAY-NGG--QRHFGENYVQELLEKGHDPEISIQLKSRGKTAV 82 (97)
Q Consensus 6 ~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a~-~~G--~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh~I 82 (97)
..|++++....+..+ + .+++++|+|..+...|..++ ++| ......+.++++++.- + +.-.|+|.
T Consensus 50 ~~l~~n~~~l~~~~~---~--~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G--~------~~~~I~~~ 116 (467)
T 2o0t_A 50 DDFRSRCRETAAAFG---S--GANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHAS--F------PPERITLH 116 (467)
T ss_dssp HHHHHHHHHHHHHTS---S--GGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTT--C------CGGGEEEC
T ss_pred HHHHHHHHHHHHhcC---C--CcEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcC--C------CcccEEEe
Confidence 445555555444331 1 58999999999988888776 677 5666777777777552 1 23579999
Q ss_pred eeccc
Q psy2327 83 KEVVD 87 (97)
Q Consensus 83 G~lq~ 87 (97)
|++++
T Consensus 117 g~~k~ 121 (467)
T 2o0t_A 117 GNNKS 121 (467)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 99875
No 27
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=48.59 E-value=20 Score=21.82 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=24.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~ga~~~ 107 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSV 107 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 578999999999999999999998764
No 28
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=48.19 E-value=24 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 112 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDY 112 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCcee
Confidence 368999999999999999999998764
No 29
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=47.84 E-value=25 Score=21.26 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 103 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEY 103 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHhCccee
Confidence 578999999999999999999998653
No 30
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=47.48 E-value=21 Score=21.54 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 107 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDY 107 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 578999999999999999999997653
No 31
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=46.94 E-value=23 Score=21.42 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=24.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 106 (136)
T 3kto_A 80 HLPTIVMASSSDIPTAVRAMRASAADF 106 (136)
T ss_dssp CCCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHcChHHh
Confidence 578999999999999999999998754
No 32
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=46.92 E-value=27 Score=20.89 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=24.1
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 107 (136)
T 3hdv_A 81 ALSIIVVSGDTDVEEAVDVMHLGVVDF 107 (136)
T ss_dssp TCEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEeCCCChHHHHHHHhCCcceE
Confidence 588999999999999999999998653
No 33
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=45.77 E-value=23 Score=21.21 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=24.1
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 105 (137)
T 3hdg_A 79 KPYVIVISAFSEMKYFIKAIELGVHLF 105 (137)
T ss_dssp CCEEEECCCCCCHHHHHHHHHHCCSEE
T ss_pred CCcEEEEecCcChHHHHHHHhCCccee
Confidence 578999999999999999999998754
No 34
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=45.14 E-value=25 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.5
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 101 (126)
T 1dbw_A 75 NIPSIVITGHGDVPMAVEAMKAGAVDF 101 (126)
T ss_dssp CCCEEEEECTTCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHhCHHHh
Confidence 467999999999999999999998654
No 35
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=44.03 E-value=26 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+-+.+.+..++++|...|
T Consensus 76 ~~pii~~s~~~~~~~~~~~~~~Ga~~~ 102 (122)
T 3gl9_A 76 RIPVIVLTAKGGEEDESLALSLGARKV 102 (122)
T ss_dssp TSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEEecCCchHHHHHHHhcChhhh
Confidence 578999999999999999999998765
No 36
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=43.59 E-value=32 Score=20.50 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=24.1
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 110 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETC 110 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEE
Confidence 588999999999999999999998664
No 37
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=43.29 E-value=31 Score=21.16 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 120 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAY 120 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEE
Confidence 578999999999999999999998754
No 38
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=43.16 E-value=28 Score=20.19 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEAIKAGAKDF 101 (120)
T ss_dssp TCCEEEEECTTCHHHHHHHHHTTCCEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHhCccee
Confidence 467999999999999999999998754
No 39
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=43.05 E-value=31 Score=20.68 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 101 (132)
T 3crn_A 75 GMKKIMVTGYASLENSVFSLNAGADAY 101 (132)
T ss_dssp TSEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeccccHHHHHHHHhccchhh
Confidence 478999999999999999999998664
No 40
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=42.95 E-value=32 Score=20.12 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1srr_A 75 NIRVIIMTAYGELDMIQESKELGALTH 101 (124)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHTCCCE
T ss_pred CCCEEEEEccCchHHHHHHHhcChHhh
Confidence 478999999999999999999997654
No 41
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=42.95 E-value=32 Score=20.00 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=23.5
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 73 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 99 (122)
T 1zgz_A 73 TVGIILVTGRSDRIDRIVGLEMGADDY 99 (122)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred CCCEEEEECCCChhhHHHHHHhCHHHH
Confidence 478999999999999999999998765
No 42
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=41.98 E-value=32 Score=20.61 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++..|...|
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~ 103 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAVVNDVDAY 103 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEecCCCHHHHHHHHHcCCcEE
Confidence 578999999999999999999998664
No 43
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=41.97 E-value=30 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 105 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAAQAGASGY 105 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEecCccHHHHHHHHHhCcCce
Confidence 477999999999999999999998754
No 44
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=41.56 E-value=54 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.7
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|=+-+.+.+..++++|...|
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~g~~~~ 107 (129)
T 3h1g_A 81 EIPIIMITAEGGKAEVITALKAGVNNY 107 (129)
T ss_dssp TCCEEEEESCCSHHHHHHHHHHTCCEE
T ss_pred CCeEEEEeCCCChHHHHHHHHcCccEE
Confidence 578999999999999999999998654
No 45
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.36 E-value=32 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 75 ~~pii~ls~~~~~~~~~~~~~~g~~~~ 101 (142)
T 2qxy_A 75 DTKVAVLSAYVDKDLIINSVKAGAVDY 101 (142)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHTCSCE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCccee
Confidence 478999999999999999999998764
No 46
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=40.77 E-value=30 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 89 ~~pii~~t~~~~~~~~~~~~~~g~~~~ 115 (152)
T 3heb_A 89 RSPVVILTTTDDQREIQRCYDLGANVY 115 (152)
T ss_dssp TSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEecCCCHHHHHHHHHCCCcEE
Confidence 578999999999999999999998654
No 47
>3pa8_A Toxin B; CLAN CD cysteine protease, protease, toxin-peptide in complex; HET: 621 IHP; 2.00A {Clostridium difficile} PDB: 3pee_B*
Probab=40.70 E-value=11 Score=28.33 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=15.4
Q ss_pred hcCCcccccccCCceEEEeeec
Q psy2327 64 KGHDPEISIQLKSRGKTAVKEV 85 (97)
Q Consensus 64 K~~~~~~~~~~~~i~wh~IG~l 85 (97)
++..+..+.+-..|+|.||||=
T Consensus 90 ~yg~P~~L~~~gkiRwqlVGHG 111 (254)
T 3pa8_A 90 KYKIPSIISDRPKIKLTFIGHG 111 (254)
T ss_dssp TTCCCTTTTTCSEEEEEEECCC
T ss_pred ccCCHhHhccCCceEEEEEecC
Confidence 5555555544467999999993
No 48
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=40.41 E-value=27 Score=21.68 Aligned_cols=27 Identities=7% Similarity=0.190 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~g~~~~ 107 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRSLECGADDF 107 (154)
T ss_dssp TSCEEEEECCCSHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCChHHHHHHHHCCCCEE
Confidence 578999999999999999999998654
No 49
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=40.28 E-value=30 Score=20.72 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 87 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 113 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVLVRMNASDW 113 (135)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHcCcHhh
Confidence 467999999999999999999998764
No 50
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.24 E-value=30 Score=20.43 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.7
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~~~g~~~~ 105 (130)
T 3eod_A 79 QTPVLVISATENMADIAKALRLGVEDV 105 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHCCSEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCCEE
Confidence 467999999999999999999998754
No 51
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=39.84 E-value=30 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=24.1
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 82 ~~pii~ls~~~~~~~~~~~~~~g~~~~ 108 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQLLDMGFIDF 108 (147)
T ss_dssp TSCEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHhCCCCEE
Confidence 578999999999999999999998765
No 52
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=38.72 E-value=34 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 137 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTF 137 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEE
Confidence 467999999999999999999998754
No 53
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=38.54 E-value=33 Score=20.70 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+-+.+.+..++++|...|
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~ 107 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGF 107 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEE
Confidence 367999999999999999999998654
No 54
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=38.04 E-value=39 Score=19.50 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=23.3
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+....++++|...|
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 98 (121)
T 2pl1_A 72 SLPILVLTARESWQDKVEVLSAGADDY 98 (121)
T ss_dssp CSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEecCCCHHHHHHHHHcCccce
Confidence 467899999999999999999998654
No 55
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=37.87 E-value=35 Score=19.64 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..+++.|...|
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 98 (121)
T 1zh2_A 72 AVPVIVLSARSEESDKIAALDAGADDY 98 (121)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHhcCCCeE
Confidence 467899999999999999999998765
No 56
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.82 E-value=45 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 76 ~~~ii~ls~~~~~~~~~~~~~~ga~~~ 102 (137)
T 3cfy_A 76 PTSVIIATAHGSVDLAVNLIQKGAEDF 102 (137)
T ss_dssp CCEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEEecCcHHHHHHHHHCCccEE
Confidence 478999999999999999999998654
No 57
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.74 E-value=35 Score=20.89 Aligned_cols=27 Identities=11% Similarity=0.397 Sum_probs=23.5
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 105 (153)
T 3cz5_A 79 AARILIFTMHQGSAFALKAFEAGASGY 105 (153)
T ss_dssp TCCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCcEE
Confidence 467999999999999999999998754
No 58
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=37.72 E-value=29 Score=20.82 Aligned_cols=27 Identities=4% Similarity=-0.093 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 89 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 115 (143)
T 2qvg_A 89 DIEVFVLTAAYTSKDKLAFESLNIRGH 115 (143)
T ss_dssp TCEEEEEESCCCHHHHHHHTTTTCCEE
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCCeE
Confidence 578999999999999999999997654
No 59
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.70 E-value=43 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=24.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 115 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGF 115 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEE
Confidence 578999999999999999999998754
No 60
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=37.63 E-value=31 Score=20.35 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 85 ~~pii~ls~~~~~~~~~~~~~~g~~~~ 111 (140)
T 1k68_A 85 RIPVVVLSTSINEDDIFHSYDLHVNCY 111 (140)
T ss_dssp GSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred cccEEEEecCCcHHHHHHHHHhchhhe
Confidence 467999999999999999999998764
No 61
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=37.28 E-value=31 Score=20.66 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 92 ~~~ii~~t~~~~~~~~~~~~~~g~~~~ 118 (149)
T 1k66_A 92 KIPVVIMTTSSNPKDIEICYSYSISSY 118 (149)
T ss_dssp GSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCCEE
Confidence 578999999999999999999998764
No 62
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=37.13 E-value=81 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+-+|.+|=+-+.+.+..++++|...|
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~y 113 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGY 113 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEE
Confidence 577999999999999999999998765
No 63
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=37.07 E-value=33 Score=20.40 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=23.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 82 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 108 (140)
T 3cg0_A 82 NLPIIFITSSQDVETFQRAKRVNPFGY 108 (140)
T ss_dssp CCCEEEEECCCCHHHHHHHHTTCCSEE
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCEE
Confidence 467899999999999999999998664
No 64
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=36.94 E-value=37 Score=21.94 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=24.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~~~ga~~~ 105 (196)
T 1qo0_D 79 RTTLVALVEYESPAVLSQIIELECHGV 105 (196)
T ss_dssp TCEEEEEECCCSHHHHHHHHHHTCSEE
T ss_pred CCCEEEEEcCCChHHHHHHHHcCCCee
Confidence 578999999999999999999998754
No 65
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=36.50 E-value=12 Score=19.89 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=12.0
Q ss_pred EEEEeccCCCHHHH
Q psy2327 29 RLVAVSKTKPKELI 42 (97)
Q Consensus 29 ~LiAVSK~~~~e~I 42 (97)
.+|+|-||.|+|..
T Consensus 15 n~VpvNKTiP~eiq 28 (34)
T 3jqo_C 15 NTVPVNKTIPVDTQ 28 (34)
T ss_dssp SEEESCSSCCCCCC
T ss_pred cccccccccCHhHh
Confidence 89999999998743
No 66
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=36.09 E-value=40 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 91 ~~piiils~~~~~~~~~~~~~~ga~~~ 117 (149)
T 1i3c_A 91 RIPVVVLTTSHNEDDVIASYELHVNCY 117 (149)
T ss_dssp TSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEECCCChHHHHHHHHcCCcEE
Confidence 467899999999999999999998665
No 67
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=35.63 E-value=44 Score=19.40 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=22.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 74 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 100 (123)
T 1xhf_A 74 NVALMFLTGRDNEVDKILGLEIGADDY 100 (123)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCCChHHHHHHHhcCcceE
Confidence 367899999999999999999998664
No 68
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=35.38 E-value=43 Score=21.59 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|=+-+.+.+..++++|...|
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~~~Ga~~~ 105 (184)
T 3rqi_A 79 DARILVLTGYASIATAVQAVKDGADNY 105 (184)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHhCHHHh
Confidence 578999999999999999999998654
No 69
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=35.22 E-value=30 Score=20.98 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.7
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~ 121 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDV 121 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCcee
Confidence 578999999999999999999997653
No 70
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=35.07 E-value=45 Score=19.54 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..+++.|...|
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 107 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKAAALGANNV 107 (129)
T ss_dssp TCEEEECCSCCCHHHHHHHHHHTCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 578999999999999999999998654
No 71
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=34.58 E-value=40 Score=19.84 Aligned_cols=27 Identities=4% Similarity=0.086 Sum_probs=23.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 73 ~~~ii~~t~~~~~~~~~~~~~~ga~~~ 99 (120)
T 3f6p_A 73 DMPIIMLTAKDSEIDKVIGLEIGADDY 99 (120)
T ss_dssp CSCEEEEEESSCHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCChHHHHHHHhCCccee
Confidence 357899999999999999999998764
No 72
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=34.47 E-value=1.2e+02 Score=22.45 Aligned_cols=55 Identities=9% Similarity=-0.049 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHH-HHcCCccccccchHHHHhh
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEA-YNGGQRHFGENYVQELLEK 64 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a-~~~G~~~fGENrvQEl~~K 64 (97)
+..++++++...+..++. ++++.+|.|..+...|..+ .++|. -|+=-.+.|+..=
T Consensus 20 l~~l~~N~~~l~~~~~~~----~~~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~ 75 (386)
T 2yxx_A 20 EETLRKRSRLVKEVFEGV----NLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLAA 75 (386)
T ss_dssp HHHHHHHHHHHHHHTTTS----CEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC----CceEEEEEeeCCCHHHHHHHHHcCC-eEEEcCHHHHHHH
Confidence 445666665554444221 4799999999876666554 46788 8888888887753
No 73
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=33.98 E-value=45 Score=21.24 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=32.1
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccccccchHHHHhhc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKG 65 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~fGENrvQEl~~K~ 65 (97)
....|.+........+..|.++|+.++-|....++++..
T Consensus 70 kTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 70 KTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 567777777777789999999999999999888887653
No 74
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=33.16 E-value=72 Score=20.13 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.6
Q ss_pred cCCCHHHHHHHHH-cCCcccc
Q psy2327 35 KTKPKELIIEAYN-GGQRHFG 54 (97)
Q Consensus 35 K~~~~e~I~~a~~-~G~~~fG 54 (97)
||++.++|..|+. .|...||
T Consensus 79 KTVt~~DV~~ALkr~g~~lYG 99 (102)
T 1id3_B 79 KTVTSLDVVYALKRQGRTLYG 99 (102)
T ss_dssp SEECHHHHHHHHHHTTCCEES
T ss_pred CcCcHHHHHHHHHHcCCCCCC
Confidence 5788899988886 6777766
No 75
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=32.84 E-value=48 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=23.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+-+.+.+..++++|...|
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~ 103 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKAVELGASYF 103 (130)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEE
T ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEE
Confidence 467889999999999999999998654
No 76
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=32.69 E-value=48 Score=18.99 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=22.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 98 (120)
T 2a9o_A 72 SVPILMLSAKDSEFDKVIGLELGADDY 98 (120)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCCEEEEecCCchHHHHHHHhCCHhhe
Confidence 356888999999999999999998654
No 77
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.59 E-value=58 Score=19.92 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CcEEEEeccCCCHHHHHHHHHcC-Ccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGG-QRH 52 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G-~~~ 52 (97)
.+.+|.+|-..+.+.+..++.+| ...
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 112 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAINEGEIYR 112 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHHTTCCSE
T ss_pred CCeEEEEECCCCHHHHHHHHhCCCcce
Confidence 57899999999999999999999 654
No 78
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.32 E-value=33 Score=20.43 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.3
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 80 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 106 (140)
T 2qr3_A 80 DLPVVLFTAYADIDLAVRGIKEGASDF 106 (140)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHcCchhe
Confidence 467899999999999999999998764
No 79
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=31.72 E-value=1.1e+02 Score=20.11 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.0
Q ss_pred CcEEEEeccCC-CHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTK-PKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~-~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+. +.+.+..++++|...|
T Consensus 151 ~~piI~ls~~~~~~~~~~~~~~~Ga~~~ 178 (206)
T 3mm4_A 151 RTPIIAVSGHDPGSEEARETIQAGMDAF 178 (206)
T ss_dssp CCCEEEEESSCCCHHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCCCcHHHHHHHHhCCCCEE
Confidence 47799999988 8899999999998754
No 80
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.70 E-value=48 Score=19.98 Aligned_cols=27 Identities=7% Similarity=0.244 Sum_probs=23.4
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|=+-+.+.+..++++|...|
T Consensus 78 ~~pii~~t~~~~~~~~~~~~~~ga~~~ 104 (136)
T 3t6k_A 78 TLPILMLTAQGDISAKIAGFEAGANDY 104 (136)
T ss_dssp TCCEEEEECTTCHHHHHHHHHHTCSEE
T ss_pred CccEEEEecCCCHHHHHHHHhcCcceE
Confidence 467999999999999999999998754
No 81
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=31.11 E-value=38 Score=20.78 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=22.5
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++.+|...|
T Consensus 75 ~~pii~ls~~~~~~~~~~~~~~g~~~~ 101 (155)
T 1qkk_A 75 DLPMILVTGHGDIPMAVQAIQDGAYDF 101 (155)
T ss_dssp TSCEEEEECGGGHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCChHHHHHHHhcCCCeE
Confidence 467888998888999999999997654
No 82
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=30.46 E-value=54 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.5
Q ss_pred cEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 28 PRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 28 V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
+.+|.+|-+.+.+.+..++++|...|
T Consensus 76 ~~ii~ls~~~~~~~~~~~~~~ga~~~ 101 (136)
T 2qzj_A 76 CPIVYMTYINEDQSILNALNSGGDDY 101 (136)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCcEE
Confidence 56888999999999999999998764
No 83
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=30.28 E-value=1.2e+02 Score=20.02 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHH-cCCcccc
Q psy2327 35 KTKPKELIIEAYN-GGQRHFG 54 (97)
Q Consensus 35 K~~~~e~I~~a~~-~G~~~fG 54 (97)
||++.++|.-|+. .|...+|
T Consensus 98 KTVta~DV~~Alkr~G~~lyg 118 (121)
T 2ly8_A 98 KTVTSLDVVYALKRQGRTLYG 118 (121)
T ss_dssp CCBCHHHHHHHHHHTTCGGGG
T ss_pred CcCcHHHHHHHHHhCCCcCCC
Confidence 7999999998876 6888776
No 84
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=29.84 E-value=96 Score=18.79 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|=..+.+.+..++++|...|
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~ 116 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAF 116 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhhe
Confidence 357889999999999999999998654
No 85
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=29.57 E-value=59 Score=21.35 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 68 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~ 94 (223)
T 2hqr_A 68 SIVVLVSSDNPTSEEEVHAFEQGADDY 94 (223)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHHcCCCEE
Confidence 478999999999999999999998764
No 86
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=29.30 E-value=39 Score=20.66 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=18.7
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 104 (154)
T 2qsj_A 78 SNAVALISGETDHELIRAALEAGADGF 104 (154)
T ss_dssp TSEEEEC-----CHHHHHHHHTTCCBB
T ss_pred CCeEEEEeCCCCHHHHHHHHHccCCEE
Confidence 478999999988899999999998754
No 87
>3ho6_A Toxin A; inositol phosphate, enterotoxin; HET: IHP; 1.60A {Clostridium difficile}
Probab=29.12 E-value=26 Score=26.46 Aligned_cols=24 Identities=21% Similarity=-0.025 Sum_probs=15.9
Q ss_pred hcCCcccccccCCceEEEeeeccc
Q psy2327 64 KGHDPEISIQLKSRGKTAVKEVVD 87 (97)
Q Consensus 64 K~~~~~~~~~~~~i~wh~IG~lq~ 87 (97)
|+..+..+.+-..++|-||||=..
T Consensus 93 ~yGdp~~L~~~gklRWqlVGHGr~ 116 (267)
T 3ho6_A 93 KYRIPERLKNKEKVKVTFIGHGKD 116 (267)
T ss_dssp TTCCCGGGTTCSEEEEEEECCCCS
T ss_pred ccCCHHHhccCCceEEEEEeCCCC
Confidence 444554454345799999999554
No 88
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=28.90 E-value=65 Score=19.10 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.2
Q ss_pred cEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 28 PRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 28 V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
+.+|.+|-+.+.+.+..++++|...|
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~ 109 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGV 109 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeE
Confidence 46888999999999999999998654
No 89
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=28.21 E-value=33 Score=20.34 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=20.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 74 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 100 (134)
T 3f6c_A 74 SGIIIIVSAKNDHFYGKHCADAGANGF 100 (134)
T ss_dssp CSEEEEEECC---CTHHHHHHTTCSEE
T ss_pred CCeEEEEeCCCChHHHHHHHHhCCCEE
Confidence 578999999999999999999997653
No 90
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=27.44 E-value=93 Score=19.45 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.3
Q ss_pred cCCCHHHHHHHHH-cCCcccc
Q psy2327 35 KTKPKELIIEAYN-GGQRHFG 54 (97)
Q Consensus 35 K~~~~e~I~~a~~-~G~~~fG 54 (97)
||+++++|..|+. .|...||
T Consensus 80 ktIt~~DV~~Alr~~g~~lYG 100 (103)
T 1tzy_D 80 KTVTAMDVVYALKRQGRTLYG 100 (103)
T ss_dssp SEECHHHHHHHHHHTTCEEES
T ss_pred CcCCHHHHHHHHHHcCCCCcC
Confidence 5778888888886 6766666
No 91
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.84 E-value=67 Score=20.63 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=33.7
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccccccchHHHHhhcCC
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQELLEKGHD 67 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~fGENrvQEl~~K~~~ 67 (97)
...+|.+........+..|.++|+.++-|....+++++...
T Consensus 60 kTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~~~ 100 (112)
T 2ebu_A 60 KTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPG 100 (112)
T ss_dssp SCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHSCC
T ss_pred CeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhCCC
Confidence 56677777766668899999999999999999999987643
No 92
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=26.77 E-value=17 Score=17.83 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=10.0
Q ss_pred HcCCccccccchH
Q psy2327 47 NGGQRHFGENYVQ 59 (97)
Q Consensus 47 ~~G~~~fGENrvQ 59 (97)
+.|++.|-|+|+.
T Consensus 9 digqtyfeesrin 21 (26)
T 2lti_A 9 DIGQTYFEESRIN 21 (26)
T ss_dssp CBBTTBSSSSTTC
T ss_pred Ccchhhhhhhhcc
Confidence 4688899998864
No 93
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=26.35 E-value=70 Score=20.91 Aligned_cols=27 Identities=7% Similarity=0.367 Sum_probs=23.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 71 ~~~ii~lt~~~~~~~~~~~~~~ga~~~ 97 (220)
T 1p2f_A 71 ETWVILLTLLSDDESVLKGFEAGADDY 97 (220)
T ss_dssp TSEEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCcEEEEEcCCCHHHHHHHHHcCCCEE
Confidence 578999999999999999999998764
No 94
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=25.82 E-value=93 Score=19.49 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=11.8
Q ss_pred cCCCHHHHHHHHH-cCCcccc
Q psy2327 35 KTKPKELIIEAYN-GGQRHFG 54 (97)
Q Consensus 35 K~~~~e~I~~a~~-~G~~~fG 54 (97)
||+++++|..|+. .|...||
T Consensus 80 ktvt~~DV~~Alr~~g~~lYG 100 (103)
T 2yfw_B 80 KTVTSLDVVYALKRQGRTLYG 100 (103)
T ss_dssp SEECHHHHHHHHHHHC-----
T ss_pred CcCcHHHHHHHHHHcCCCCcC
Confidence 5778888888876 5766665
No 95
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=25.52 E-value=85 Score=20.40 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~Ga~~~ 105 (215)
T 1a04_A 79 SGRIVVFSVSNHEEDVVTALKRGADGY 105 (215)
T ss_dssp CSEEEEEECCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHHcCCcEE
Confidence 478999999999999999999998654
No 96
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=24.65 E-value=62 Score=19.55 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.2
Q ss_pred cCCCHHHHHHHHH-cCCcccc
Q psy2327 35 KTKPKELIIEAYN-GGQRHFG 54 (97)
Q Consensus 35 K~~~~e~I~~a~~-~G~~~fG 54 (97)
||++.++|..|+. .|...||
T Consensus 61 KTvt~~DV~~Alk~~g~~lYg 81 (84)
T 2hue_C 61 KTVTAMDVVYALKRQGRTLYG 81 (84)
T ss_dssp SEECHHHHHHHTTTTCEEEES
T ss_pred CcCcHHHHHHHHHHcCCCCCC
Confidence 5788899988876 5766666
No 97
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=24.09 E-value=38 Score=19.67 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=17.2
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..+++.|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1mb3_A 75 HIPVVAVTAFAMKGDEERIREGGCEAY 101 (124)
T ss_dssp TSCEEEEC------CHHHHHHHTCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHhCCCCEE
Confidence 477899998888888889999998654
No 98
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.63 E-value=66 Score=19.58 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcC-Ccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGG-QRH 52 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G-~~~ 52 (97)
.+.+|.+|-..+.+.+..++..| ...
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 102 (151)
T 3kcn_A 76 NSVYLMLTGNQDLTTAMEAVNEGQVFR 102 (151)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTCCSE
T ss_pred CcEEEEEECCCCHHHHHHHHHcCCeeE
Confidence 57899999999999999999999 654
No 99
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=23.43 E-value=72 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.0
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+-+.+.+..++++|...|
T Consensus 75 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~ 101 (225)
T 3c3w_A 75 DLRCLILTSYTSDEAMLDAILAGASGY 101 (225)
T ss_dssp TCEEEEGGGSSSHHHHHHHHHHTCCCH
T ss_pred CCcEEEEECCCCHHHHHHHHHCCCCEE
Confidence 578999999999999999999998754
No 100
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=23.09 E-value=27 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=18.4
Q ss_pred cEEEEeccCCCHHHHHHHHH
Q psy2327 28 PRLVAVSKTKPKELIIEAYN 47 (97)
Q Consensus 28 V~LiAVSK~~~~e~I~~a~~ 47 (97)
=.+|.|++..+.++|+.||.
T Consensus 36 y~~Lgv~~~as~~eIKkAYR 55 (92)
T 2qwo_B 36 WKPVGMADLVTPEQVKKVYR 55 (92)
T ss_dssp CCCCCGGGSSSHHHHHHHHH
T ss_pred CeecCCCCCCCHHHHHHHHH
Confidence 47889999999999999996
No 101
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.73 E-value=82 Score=17.11 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2327 2 EAAIKGTLEKVEQACAR 18 (97)
Q Consensus 2 ~~nl~~I~~rI~~a~~~ 18 (97)
++|++.|.+.|.-||..
T Consensus 7 ~d~I~aiEQqiyvA~se 23 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASK 23 (40)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 57899999999988865
No 102
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.63 E-value=1.3e+02 Score=17.69 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=22.9
Q ss_pred CcEEEEeccCCCHHHHHHHHHcC-Ccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGG-QRH 52 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G-~~~ 52 (97)
.+.+|.+|-..+.+.+..++..| ...
T Consensus 92 ~~~ii~~t~~~~~~~~~~~~~~g~~~~ 118 (146)
T 3ilh_A 92 KSIVCLLSSSLDPRDQAKAEASDWVDY 118 (146)
T ss_dssp TCEEEEECSSCCHHHHHHHHHCSSCCE
T ss_pred CCeEEEEeCCCChHHHHHHHhcCCcce
Confidence 57899999999999999999999 654
No 103
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.59 E-value=81 Score=19.16 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=22.5
Q ss_pred CcEEEEeccCCCHHHHHHHHHcC-Cccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGG-QRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G-~~~f 53 (97)
.+.+|.+|-..+.+.+..++..| ...|
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~~ 106 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRF 106 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEE
T ss_pred CCcEEEEecCCCHHHHHHHHhccchhee
Confidence 47899999999999999999998 6543
No 104
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.42 E-value=84 Score=21.48 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=23.6
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|=+-+.+.+..++++|...|
T Consensus 108 ~~~iI~lt~~~~~~~~~~a~~~Ga~~y 134 (249)
T 3q9s_A 108 ALPIIVLTARDTVEEKVRLLGLGADDY 134 (249)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCcEE
Confidence 467999999999999999999998653
No 105
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=20.74 E-value=2.5e+02 Score=20.48 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCcEEEEeccCCCHHHHHHH-HHcCCccccccchHHHHhhcCCcccccccCCceEEEee
Q psy2327 5 IKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEA-YNGGQRHFGENYVQELLEKGHDPEISIQLKSRGKTAVK 83 (97)
Q Consensus 5 l~~I~~rI~~a~~~~~r~~~~~~V~LiAVSK~~~~e~I~~a-~~~G~~~fGENrvQEl~~K~~~~~~~~~~~~i~wh~IG 83 (97)
+..++.+++...+..+ .+++.+|.|..+...|..+ .++|. -|+=-.+.|+..=... ..+.-.++|.|
T Consensus 24 l~~l~~N~~~l~~~~~------~~~~~~~vKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~-----G~~~~~I~~~~ 91 (372)
T 2nva_A 24 PKIVEDLIDQWTILFP------RVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQI-----GVSPSRIIFAH 91 (372)
T ss_dssp HHHHHHHHHHHHHHCT------TEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHH-----TCCGGGEEECC
T ss_pred HHHHHHHHHHHHHhCC------CCeEEEEeeeCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHc-----CCCHHHEEECC
Confidence 4456666655444431 4799999999876665554 56888 8888888888753211 11112467777
Q ss_pred ecc
Q psy2327 84 EVV 86 (97)
Q Consensus 84 ~lq 86 (97)
+..
T Consensus 92 ~~k 94 (372)
T 2nva_A 92 TMK 94 (372)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 106
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.57 E-value=26 Score=19.25 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=10.8
Q ss_pred ccchHHHHhhcCCc
Q psy2327 55 ENYVQELLEKGHDP 68 (97)
Q Consensus 55 ENrvQEl~~K~~~~ 68 (97)
-||+||+.++-.++
T Consensus 9 knyiqeleernael 22 (46)
T 3he4_B 9 KNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 38899999887654
No 107
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=20.17 E-value=97 Score=21.97 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=23.8
Q ss_pred CcEEEEeccCCCHHHHHHHHHcCCccc
Q psy2327 27 RPRLVAVSKTKPKELIIEAYNGGQRHF 53 (97)
Q Consensus 27 ~V~LiAVSK~~~~e~I~~a~~~G~~~f 53 (97)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 93 ~~~ii~~s~~~~~~~~~~a~~~Ga~~~ 119 (358)
T 3bre_A 93 DIPIIVLSTKEEPTVKSAAFAAGANDY 119 (358)
T ss_dssp TSCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeCCCCHHHHHHHHhcChheE
Confidence 578999999999999999999998754
Done!