RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2327
         (97 letters)



>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 244

 Score = 56.5 bits (135), Expect = 1e-11
 Identities = 28/87 (32%), Positives = 36/87 (41%)

Query: 1  MEAAIKGTLEKVEQACARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQE 60
          + A  +   E V             S+  L+ VSK KP   I   Y+ G R FGENYVQE
Sbjct: 13 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 72

Query: 61 LLEKGHDPEISIQLKSRGKTAVKEVVD 87
          L+EK       I+    G     +  D
Sbjct: 73 LIEKAKLLPDDIKWHFIGGLQTNKCKD 99


>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
          {Loblolly pine (Pinus taeda) [TaxId: 3352]}
          Length = 307

 Score = 25.9 bits (55), Expect = 0.89
 Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 36 TKPKELIIEAYNGGQRHFGENYVQELLEKGHD 67
          ++ + L+I    G   + G +  +  L+ GH 
Sbjct: 2  SRSRILLI----GATGYIGRHVAKASLDLGHP 29


>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 205

 Score = 24.2 bits (51), Expect = 3.0
 Identities = 3/20 (15%), Positives = 9/20 (45%)

Query: 48 GGQRHFGENYVQELLEKGHD 67
          G     G   + + ++ G++
Sbjct: 10 GATGQTGLTTLAQAVQAGYE 29


>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
          arborvitae (Thuja plicata) [TaxId: 3316]}
          Length = 312

 Score = 24.0 bits (50), Expect = 3.8
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 35 KTKPKELIIEAYNGGQRHFGENYVQELLEKGHD 67
            K + LI+    GG  + G+  V   +  GH 
Sbjct: 1  DKKSRVLIV----GGTGYIGKRIVNASISLGHP 29


>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 341

 Score = 24.2 bits (51), Expect = 3.8
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)

Query: 35 KTKPKELIIEAYNGGQRHFGENYVQELLEKGHD 67
            +PK  +I    G     G N ++ LL+    
Sbjct: 13 PAQPKVWLI---TGVAGFIGSNLLETLLKLDQK 42


>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 59

 Score = 22.2 bits (47), Expect = 7.7
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 17 ARRPQELQWSRPRLVAVSKTKPKELIIEAYNGGQRHFGENYVQEL 61
          AR   EL   +  ++ +   + +   +   +G       N +  +
Sbjct: 12 ARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIM 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,024
Number of extensions: 14696
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 9
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)