Query psy2332
Match_columns 204
No_of_seqs 191 out of 668
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:54:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_C Aspartyl/glutamyl-tRNA( 17.3 84 0.0029 22.5 2.7 40 157-199 45-84 (100)
2 3h0l_C Glutamyl-tRNA(Gln) amid 16.3 91 0.0031 22.1 2.6 39 157-199 43-81 (94)
3 1iie_A Protein (HLA-DR antigen 13.0 81 0.0028 22.1 1.5 25 23-47 32-60 (75)
4 2jo1_A Phospholemman; FXYD1, N 11.1 55 0.0019 22.8 0.1 14 188-201 59-72 (72)
5 4gc0_A D-xylose-proton symport 10.9 4.5E+02 0.015 22.0 5.9 14 73-86 456-469 (491)
6 3vlv_A ALGQ1; sugar binding pr 10.4 1.9E+02 0.0065 25.3 3.5 40 102-141 460-499 (502)
7 2l9d_A Uncharacterized protein 8.7 57 0.0019 24.4 -0.6 43 84-126 43-87 (108)
8 1jb0_I Photosystem 1 reaction 8.5 2.8E+02 0.0097 16.9 2.6 18 5-22 9-26 (38)
9 4hkr_A Calcium release-activat 8.3 6.9E+02 0.024 20.6 5.8 28 86-114 165-192 (214)
10 3tj5_B Metavinculin, SCA-famil 7.8 39 0.0013 19.2 -1.4 7 151-157 14-20 (27)
No 1
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=17.26 E-value=84 Score=22.54 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=22.8
Q ss_pred cCccccCCCCCCCCCccchhHHHhhhhcCCCchhhhhhccccc
Q psy2332 157 LEDTSLQPGYPQDRGEHVLREEMEKSLADETSDDEILRGGCDR 199 (204)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 199 (204)
++...+.|..+...-..+.||+. -...++++++|.|...+
T Consensus 45 vDt~~VeP~~~~~~~~~~lReD~---v~~~~~~e~~L~nAP~~ 84 (100)
T 3ip4_C 45 ADTEGVEPTYHVLDLQNVLREDK---AIKGIPQELALKNAKET 84 (100)
T ss_dssp SCCTTCCCCSCCSCCCCCCBCSC---CCCCCCHHHHHTTCSSE
T ss_pred cCCCCCCcccccccccCCCCCCC---CCCCCCHHHHHHcCchh
Confidence 33333334333333344568772 23456899999998654
No 2
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=16.32 E-value=91 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=22.6
Q ss_pred cCccccCCCCCCCCCccchhHHHhhhhcCCCchhhhhhccccc
Q psy2332 157 LEDTSLQPGYPQDRGEHVLREEMEKSLADETSDDEILRGGCDR 199 (204)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 199 (204)
++...+.|..+.... .+.||+. -...++++++|.|...+
T Consensus 43 vDt~~VeP~~~~~~~-~~lReD~---v~~~~~~e~~L~nAP~~ 81 (94)
T 3h0l_C 43 LDTENVEPYIQEFEE-TPMREDE---PHPSLDREKALMNAPER 81 (94)
T ss_dssp SCCTTCCCCCCCCSS-CCCBCSC---CCCCCCHHHHHTTCSSE
T ss_pred cCCCCcCcccCcccc-cCCCCCC---CCCCCCHHHHHHcCchh
Confidence 333333343443333 5568772 23456899999998764
No 3
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=13.03 E-value=81 Score=22.12 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=16.1
Q ss_pred HHHHhhcC-C---cchhhhHHHHHHHHHH
Q psy2332 23 SYKALKFN-D---TPALLHWLTYWIVSAL 47 (204)
Q Consensus 23 S~kal~~~-~---~~~~~~WL~YWiV~a~ 47 (204)
-.|.||+. + =.....||-||.+|-+
T Consensus 32 NLk~LK~~m~~~dWk~FEsWM~~WLLFeM 60 (75)
T 1iie_A 32 NLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHH
Confidence 44555543 2 2357899999998754
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.13 E-value=55 Score=22.79 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=11.4
Q ss_pred chhhhhhccccccc
Q psy2332 188 SDDEILRGGCDRSR 201 (204)
Q Consensus 188 ~~~~~~~~~~~~~~ 201 (204)
+--++||+-|+|||
T Consensus 59 ~~~~~~~~~~~~~~ 72 (72)
T 2jo1_A 59 TFRSSIRRLSTRRR 72 (72)
T ss_dssp THHHHHHHHHHCCC
T ss_pred cHHHHHHHHhhccC
Confidence 56678999999886
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=10.94 E-value=4.5e+02 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCch
Q psy2332 73 IFILWLIYPATRGS 86 (204)
Q Consensus 73 ~fliWL~~P~t~GA 86 (204)
++++|++.|.|+|=
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 34578899999993
No 6
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=10.41 E-value=1.9e+02 Score=25.34 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=23.8
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2332 102 EVDIDEFVDTCTRDGFSAVSDLGWTIVDVVIKKLKEANVR 141 (204)
Q Consensus 102 E~~ID~~l~~~k~~~~~~~~~~g~~~~~~a~~~l~~~a~~ 141 (204)
++..|+++.++++.+.+.++..-++..+.-.+.+.+.|++
T Consensus 460 d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~~~~~~~~ 499 (502)
T 3vlv_A 460 EKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGGAAKPAQV 499 (502)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------
T ss_pred hhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhccCchhc
Confidence 4578888888888888888887777666544444444443
No 7
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=8.73 E-value=57 Score=24.45 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=35.3
Q ss_pred CchHHHHHHhhhhccccChh--hHHHHHHHhhHhHHHHHHHHHHH
Q psy2332 84 RGSKFIYREFLHPMLIKCEV--DIDEFVDTCTRDGFSAVSDLGWT 126 (204)
Q Consensus 84 ~GA~~IY~~~i~P~L~~~E~--~ID~~l~~~k~~~~~~~~~~g~~ 126 (204)
.+....|.-+++|.+....+ -+|.-|......+|+.+++|++.
T Consensus 43 ~~~rl~YSp~~~P~~i~GvkcVvVd~~L~~~~P~af~fvm~FA~d 87 (108)
T 2l9d_A 43 ADRKLRYSPYLKPRVIEGVRCLAVDLKLKDTNPEGFNQLMHFATE 87 (108)
T ss_dssp SSSSEECCTTEEECCBTTBCCEEEETHHHHHCHHHHHHHHHHHHH
T ss_pred CCCcceeCCcccceeeCCeeEEEECcHhhhcChHHHHHHHHHHHh
Confidence 46667888999999877665 56889999999999999998763
No 8
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=8.46 E-value=2.8e+02 Score=16.85 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhHhHHHH
Q psy2332 5 SLCRLITFGLGTLYPGYA 22 (204)
Q Consensus 5 ~l~~ll~~~ig~lYPay~ 22 (204)
++-.+.+=++|++.||..
T Consensus 9 ~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp THHHHHHHHHHTHHHHHH
T ss_pred hCChhhHhHHHHHHHHHH
Confidence 355666677999999864
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=8.30 E-value=6.9e+02 Score=20.62 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=17.7
Q ss_pred hHHHHHHhhhhccccChhhHHHHHHHhhH
Q psy2332 86 SKFIYREFLHPMLIKCEVDIDEFVDTCTR 114 (204)
Q Consensus 86 A~~IY~~~i~P~L~~~E~~ID~~l~~~k~ 114 (204)
|-..|++.+..-...+.++|++. +++++
T Consensus 165 a~hFYrsL~~hk~e~~~~~i~el-~~~~~ 192 (214)
T 4hkr_A 165 AIHFYRSLVSHKYEVTVSGIREL-EMLKE 192 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55678888877777766666643 33333
No 10
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=7.79 E-value=39 Score=19.20 Aligned_cols=7 Identities=43% Similarity=0.415 Sum_probs=4.3
Q ss_pred ccccccc
Q psy2332 151 SCSIETL 157 (204)
Q Consensus 151 s~~~~~~ 157 (204)
|.|||||
T Consensus 14 S~sMQdL 20 (27)
T 3tj5_B 14 SGSMQYL 20 (27)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566665
Done!