Query psy2332
Match_columns 204
No_of_seqs 191 out of 668
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 21:54:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 44.8 7.7 0.00056 20.5 2.3 19 7-25 4-22 (27)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 15.2 66 0.0048 16.6 2.6 11 41-51 10-20 (26)
3 d1iiea_ a.109.1.1 (A:) Class I 13.5 36 0.0026 22.2 1.5 25 23-47 32-60 (75)
4 d2f2ac1 a.137.12.1 (C:3-94) Gl 12.1 68 0.0049 20.7 2.7 43 155-200 41-83 (92)
5 d2i5nh2 f.23.10.1 (H:1-36) Pho 6.7 1.6E+02 0.011 15.9 2.2 14 35-48 18-31 (36)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 6.0 2.2E+02 0.016 18.1 3.3 19 8-26 11-29 (158)
7 d1kf6d_ f.21.2.2 (D:) Fumarate 5.4 92 0.0067 21.8 0.9 20 1-20 23-42 (119)
8 d2h6fb1 a.102.4.3 (B:521-921) 5.2 1.3E+02 0.0093 24.9 1.9 17 34-50 78-94 (401)
9 d1gnwa1 a.45.1.1 (A:86-211) Cl 5.2 3.3E+02 0.024 17.6 4.0 29 85-113 29-59 (126)
10 d1nekd_ f.21.2.2 (D:) Succinat 4.5 1E+02 0.0075 20.5 0.6 13 84-96 72-84 (113)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=44.75 E-value=7.7 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHhHHHHHHH
Q psy2332 7 CRLITFGLGTLYPGYASYK 25 (204)
Q Consensus 7 ~~ll~~~ig~lYPay~S~k 25 (204)
.-++..+.|+.|.||+.||
T Consensus 4 gli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 4456677899999998876
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.16 E-value=66 Score=16.61 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q psy2332 41 YWIVSALFLTF 51 (204)
Q Consensus 41 YWiV~a~~~~f 51 (204)
+|+.|++...+
T Consensus 10 fw~ffalli~y 20 (26)
T d1rzhh2 10 FWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777765553
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.47 E-value=36 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=16.2
Q ss_pred HHHHhhcC-C---cchhhhHHHHHHHHHH
Q psy2332 23 SYKALKFN-D---TPALLHWLTYWIVSAL 47 (204)
Q Consensus 23 S~kal~~~-~---~~~~~~WL~YWiV~a~ 47 (204)
-.|.||+. + =.....||-||.+|-+
T Consensus 32 NLk~LK~~M~~~dWk~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 32 NLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 44555543 2 2357899999998754
No 4
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=12.10 E-value=68 Score=20.68 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=25.5
Q ss_pred cccCccccCCCCCCCCCccchhHHHhhhhcCCCchhhhhhcccccc
Q psy2332 155 ETLEDTSLQPGYPQDRGEHVLREEMEKSLADETSDDEILRGGCDRS 200 (204)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 200 (204)
++++-..+.|-.+....+++.||+. -.+..+++++|.|+....
T Consensus 41 ~~vDt~~vep~~~~~~~~~~lReD~---~~~~~~~~~~l~naP~~~ 83 (92)
T d2f2ac1 41 DSADTEGVEPTYHVLDLQNVLREDK---AIKGIPQELALKNAKETE 83 (92)
T ss_dssp GGSCCTTCCCCSCSSCCCCCCBCCC---CCCCCCHHHHHTTCSSEE
T ss_pred hcCCcCCCCCCccccccccCCCCCc---CCCCCCHHHHHHcCCccc
Confidence 3444444444444444556668873 234568899998876643
No 5
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.66 E-value=1.6e+02 Score=15.95 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHH
Q psy2332 35 LLHWLTYWIVSALF 48 (204)
Q Consensus 35 ~~~WL~YWiV~a~~ 48 (204)
+.+||.-|.|.-++
T Consensus 18 yaqwlviwtvvlly 31 (36)
T d2i5nh2 18 YAQWLVIWTVVLLY 31 (36)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 56788777765443
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.95 E-value=2.2e+02 Score=18.12 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=12.9
Q ss_pred HHHHHHHHhHhHHHHHHHH
Q psy2332 8 RLITFGLGTLYPGYASYKA 26 (204)
Q Consensus 8 ~ll~~~ig~lYPay~S~ka 26 (204)
-++..+.++.+|+|..+..
T Consensus 11 aIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 11 AIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455667777888876644
No 7
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=5.36 E-value=92 Score=21.84 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.8
Q ss_pred CchhhHHHHHHHHHHhHhHH
Q psy2332 1 MLPYSLCRLITFGLGTLYPG 20 (204)
Q Consensus 1 M~~~~l~~ll~~~ig~lYPa 20 (204)
|++.++...+++++|++.|.
T Consensus 23 m~~A~~~Pvlill~giLlPl 42 (119)
T d1kf6d_ 23 MWSAIIAPVMILLVGILLPL 42 (119)
T ss_dssp HHHHHTHHHHHHHHHTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 56677788888888888885
No 8
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.24 E-value=1.3e+02 Score=24.88 Aligned_cols=17 Identities=47% Similarity=0.905 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy2332 34 ALLHWLTYWIVSALFLT 50 (204)
Q Consensus 34 ~~~~WL~YWiV~a~~~~ 50 (204)
.-+-||.||++-++-.+
T Consensus 78 ~~r~~l~yw~l~~L~LL 94 (401)
T d2h6fb1 78 ASRPWLCYWILHSLELL 94 (401)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 35789999998887654
No 9
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.23 E-value=3.3e+02 Score=17.59 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=17.5
Q ss_pred chHHHHHHhhhhccc--cChhhHHHHHHHhh
Q psy2332 85 GSKFIYREFLHPMLI--KCEVDIDEFVDTCT 113 (204)
Q Consensus 85 GA~~IY~~~i~P~L~--~~E~~ID~~l~~~k 113 (204)
.+.++|++++.|... ..+..|++....++
T Consensus 29 ~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~ 59 (126)
T d1gnwa1 29 ASKLAFEQIFKSIYGLTTDEAVVAEEEAKLA 59 (126)
T ss_dssp HHHHHHHHTHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Confidence 345667888888753 24555555555544
No 10
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=1e+02 Score=20.49 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=7.6
Q ss_pred CchHHHHHHhhhh
Q psy2332 84 RGSKFIYREFLHP 96 (204)
Q Consensus 84 ~GA~~IY~~~i~P 96 (204)
.|-..|-+.++||
T Consensus 72 lGl~~IieDYi~~ 84 (113)
T d1nekd_ 72 IGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HhHhhhHHHhcCC
Confidence 4555666666654
Done!