RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2332
(204 letters)
>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family. This family
includes members from a wide variety of eukaryotes. It
includes the TB2/DP1 (deleted in polyposis) protein,
which in humans is deleted in severe forms of familial
adenomatous polyposis, an autosomal dominant
oncological inherited disease. The family also includes
the plant protein of known similarity to TB2/DP1, the
HVA22 abscisic acid-induced protein, which is thought
to be a regulatory protein.
Length = 94
Score = 109 bits (274), Expect = 3e-31
Identities = 45/91 (49%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 8 RLITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFY 67
RL++ +G LYP YASYKAL+ D WLTYW+V + FLT E F D+ L W PFY
Sbjct: 6 RLLSNLIGFLYPAYASYKALESKDKEDDTQWLTYWVVYS-FLTLFESFSDIILS-WIPFY 63
Query: 68 YEIKIIFILWLIYPATRGSKFIYREFLHPML 98
YE+K++F++WL+ P T+G+ +IY +F+ P+L
Sbjct: 64 YELKLLFLVWLVLPKTQGASYIYDKFIRPLL 94
>gnl|CDD|227385 COG5052, YOP1, Protein involved in membrane traffic [Intracellular
trafficking and secretion].
Length = 186
Score = 59.0 bits (143), Expect = 5e-11
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 9 LITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYY 68
++T G P S A + LTYW+V FL+ E + L PFY+
Sbjct: 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFG-FLSAIEKYSGAIL-SKVPFYW 118
Query: 69 EIKIIFILWLIYPATRGSKFIYREFLHPML 98
+K +F+LWL+ P T G++ IY + + P +
Sbjct: 119 TLKNVFLLWLLLPRTEGARIIYDDIIAPDV 148
>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function
unknown].
Length = 222
Score = 31.1 bits (71), Expect = 0.26
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 38 WLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLI 79
+T W+VS +F + L P Y I L +I
Sbjct: 21 AITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVI 62
>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
Length = 552
Score = 31.2 bits (71), Expect = 0.31
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 41 YWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLIYPATRGSKF-IYREFLHPMLI 99
Y +++A L F+ +F DL G FP + ++ +WL G+ + + R +L+
Sbjct: 290 YPLIAAWLLAFSLLFFDLLHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKILL 349
>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional.
Length = 263
Score = 30.3 bits (69), Expect = 0.51
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Query: 11 TFG-LGTLYPGYASYKALKF 29
TFG +G YPGYASY A KF
Sbjct: 140 TFGSIG--YPGYASYCASKF 157
>gnl|CDD|152707 pfam12272, DUF3610, Protein of unknown function (DUF3610). This
domain family is found in eukaryotes, and is typically
between 146 and 160 amino acids in length. There are two
conserved sequence motifs: FNN and IDS.
Length = 157
Score = 28.6 bits (64), Expect = 1.6
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 68 YEIKIIFILWLIYPATRGSKFIYR---EFLHPMLIKCE--VDIDEFVDTCTRDGFSAVSD 122
+ I F L + PA + +Y+ + C +D+ EF DT RDG D
Sbjct: 58 WTICASFNLESLEPAIKAFNKVYKSLVDICDKYKNLCPEILDLTEFADTILRDGLIDTLD 117
Query: 123 LGWTIVDVVIKKLKEANVRQTPLYQKWNSC 152
+D +K+L + + YQ S
Sbjct: 118 ----TLDFKVKRLSLSEDDVSNPYQNVTSI 143
>gnl|CDD|227306 COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 354
Score = 28.9 bits (65), Expect = 2.1
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 119 AVSDLGWT------IVDVVIKKLKEANV--RQ-TPLYQKWNSCSIETLEDTSLQPGYPQD 169
AV D+G T I D I +E V Q T Q+ S + E E+ P D
Sbjct: 196 AVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTD 255
Query: 170 RGEHVLREEMEKSLADETS 188
G VLR + L E
Sbjct: 256 YGSEVLRPFLG-ELTQEIR 273
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 28.7 bits (64), Expect = 2.7
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 132 IKKLKE-ANVRQT--PLYQKWNS-CS-IETLEDTSLQPGYPQDRGEHVLREEMEK 181
IK+LKE + + L +KW S +E LE + P +RG H+L+EE E+
Sbjct: 332 IKRLKEEYSSNKEILELIEKWESLWERMEELEAKANDPNRFNNRGGHLLKEEKER 386
>gnl|CDD|212033 cd10323, SLC-NCS1sbd, nucleobase-cation-symport-1 (NCS1)
transporters; solute-binding domain. NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
This family includes Microbacterium liquefaciens Mhp1, a
transporter that mediates the uptake of indolyl methyl-
and benzyl-hydantoins as part of a metabolic salvage
pathway for their conversion to amino acids. It also
includes various Saccharomyces cerevisiae transporters:
Fcy21p (Purine-cytosine permease), vitamin B6
transporter Tpn1, nicotinamide riboside transporter 1
(Nrt1p, also called Thi71p), Dal4p (allantoin permease),
Fui1p (uridine permease), and Fur4p (uracil permease).
Mhp1 has 12 transmembrane (TM) helices (an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs11-12; TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). NCS1s belong to a superfamily
which also contains the solute carrier 5 family
sodium/glucose transporters (SLC5s), and SLC6
neurotransmitter transporters.
Length = 453
Score = 27.8 bits (62), Expect = 4.0
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 14 LGTLYPGYASYKALKFNDTPALLHWLTY---WIVSALFLTFTEIFLDLFLGFWFPFYYEI 70
G ++ Y L + L + W++ + + + F+ F P Y +
Sbjct: 123 TGLIFGALLPYADLFGFAGLSTNGPLWFVIFWLLQVVTVFYGITFIRTVNAFASPVAYAV 182
Query: 71 KIIFILWLI 79
+WL+
Sbjct: 183 FGGMAIWLL 191
>gnl|CDD|217911 pfam04123, DUF373, Domain of unknown function (DUF373). Archaeal
domain of unknown function. Predicted to be an integral
membrane protein with six transmembrane regions.
Length = 344
Score = 27.6 bits (62), Expect = 4.2
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 9 LITFGLGTLYPGYASYKALKFNDT----PALLHWLTYWIVSALFLTFTEIFLDLFLGFWF 64
+I +G +Y GY S + L L+ W+ A + F +D +L F
Sbjct: 233 IILILIGIIY-GYLSLEKLSAISAGGVAATFLNGAVPWLALAALIAFLGKLIDEYLNGRF 291
Query: 65 PFYYEIKIIFILWLIYPATRG--SKFIYREFL 94
+ I F + I G F+ E
Sbjct: 292 RLWRYINAPFFVLAIGLVVYGLSGYFLSIELA 323
>gnl|CDD|149172 pfam07948, Nairovirus_M, Nairovirus M polyprotein-like. The
sequences in this family are similar to the Dugbe virus
M polyprotein precursor, which includes glycoproteins G1
and G2. Both are thought to be inserted in the membrane
of the Golgi complex of the infected host cell, and G1
is known to have a role in infection of vertebrate
hosts.
Length = 645
Score = 27.9 bits (62), Expect = 4.3
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 58 LFLGFWFPFYYEI-----KIIFILWLIYPATRGSKFI-YREFLHPMLIKCE 102
+ FWF F Y I K++F L LI T G K YRE KCE
Sbjct: 452 MAFLFWFSFGYVITCIFCKVLFYL-LIVIGTLGKKLKQYRELKPQTCTKCE 501
>gnl|CDD|220637 pfam10223, DUF2181, Uncharacterized conserved protein (DUF2181).
This is region of approximately 250 residues conserved
from worms to humans. Its function is unknown.
Length = 244
Score = 27.4 bits (61), Expect = 4.4
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 102 EVDIDEFVDTCTRDGFSAVSDLGWTIV---DVVIKKLKEANVRQ 142
VD F + R A LGWT D + EA VRQ
Sbjct: 120 PVDPSTFFELVKRLFPDATLSLGWTTGWGPDFLNGGYTEAMVRQ 163
>gnl|CDD|184370 PRK13886, PRK13886, conjugal transfer protein TraL; Provisional.
Length = 241
Score = 27.4 bits (61), Expect = 4.9
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 30 NDTPALLHWLTYWIVSALFLTFTEIFLDLFLGF-----WFPFYYEIKIIFILWL 78
N PALL + + +V +T + LD GF FP + +F++WL
Sbjct: 103 NQVPALLQDMGHELVVHTVVTGGQALLDTVSGFAQLASQFP----AECLFVVWL 152
>gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal
structure and biogenesis].
Length = 541
Score = 27.3 bits (61), Expect = 5.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 115 DGFSAVSDLGWTIVDVVIKKLKEANVR 141
DG +SDL W +K K+ +
Sbjct: 388 DGLVHLSDLSWDRPGEEAEKYKKGDEV 414
>gnl|CDD|221166 pfam11684, DUF3280, Protein of unknown function (DUF2380). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 140
Score = 26.5 bits (59), Expect = 6.3
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 156 TLEDTSLQPGYPQDRGEHVLREEMEKSLADETSDDEILR 194
L DTSL+ E + +L ++ ++ R
Sbjct: 10 ELIDTSLEGALGPTAAEQARLAAVTDALREDLAESGRYR 48
>gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate
aminotransferase; Provisional.
Length = 379
Score = 27.3 bits (61), Expect = 6.8
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 121 SDLGWTIVDVVIKKLKEANVRQTPLYQKWNSCSIETLEDTSLQ----PGYPQDRGEH 173
+D+ I V + KL+ N R+ + ++ ++ L D Q P +P H
Sbjct: 239 ADINAAIALVQLAKLEALNARRREIAARY----LQALADLPFQPLSLPAWPHQHAWH 291
>gnl|CDD|233252 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative
plasmid. This model describes topoisomerase III from
bacteria and its equivalents encoded on plasmids. The
gene is designated topB if found in the bacterial
chromosome, traE on conjugative plasmid RP4, etc. These
enzymes are involved in the control of DNA topology. DNA
topoisomerase III belongs to the type I topoisomerases,
which are ATP-independent [DNA metabolism, DNA
replication, recombination, and repair].
Length = 660
Score = 27.1 bits (60), Expect = 7.5
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 120 VSDLGWTIVDVVIKKLKEANVRQTPLYQKWNSCSIETLEDTSLQPGYPQDRGEHVLREEM 179
+ D GW + ++ +E P +QK + +ETLE Q P E L M
Sbjct: 434 LQDNGWKALLGKQEEDEETEDTTLPAFQKGDELDVETLELLEKQTKPPARYTEGTLLSAM 493
Query: 180 E 180
Sbjct: 494 T 494
>gnl|CDD|227155 COG4818, COG4818, Predicted membrane protein [Function unknown].
Length = 105
Score = 25.8 bits (57), Expect = 8.4
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 48 FLTFTEIFLDLFLGFWFPF--YYEIKII----FILWL--IYPATRGSKF 88
FLTF ++L + L + P+ + ++ FILWL +Y A RG +F
Sbjct: 39 FLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMYKAYRGERF 87
>gnl|CDD|225146 COG2237, COG2237, Predicted membrane protein [Function unknown].
Length = 364
Score = 26.9 bits (60), Expect = 8.6
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 9 LITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLG------- 61
LI G +L +S + +L+ T+W A+ T IF DL +G
Sbjct: 236 LILGGASSLTIALSSSAGALLAISTFILY-STWWFTLAILTTMVGIFFDLIIGGKVRIEY 294
Query: 62 FWFPFYYEIKIIFILW 77
F+Y I I F+++
Sbjct: 295 LKISFFYLI-IAFLVY 309
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.143 0.464
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,909,124
Number of extensions: 1047443
Number of successful extensions: 1582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1568
Number of HSP's successfully gapped: 85
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)