BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2336
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 120/208 (57%), Positives = 151/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 54 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 113
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQGLLN +F+
Sbjct: 114 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNS 173
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 174 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 233
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 234 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 261
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 257 bits (657), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 120/208 (57%), Positives = 151/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 60 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 119
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQGLLN +F+
Sbjct: 120 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNS 179
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 180 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 239
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 240 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 267
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 123/211 (58%), Positives = 152/211 (72%), Gaps = 4/211 (1%)
Query: 8 LLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 67
L VF+ V VDV DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N
Sbjct: 52 LETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLAN 111
Query: 68 CDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLY 127
D+LFDREELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQG+LN +
Sbjct: 112 IDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTF 171
Query: 128 FSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGA 187
FS WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G KPW +D T +
Sbjct: 172 FSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKS 231
Query: 188 ILSG--DSHLTN--FLQLWWDVFVVHVHPTL 214
+ S D ++T+ FL LWW++F +V P L
Sbjct: 232 VKSEAHDPNMTHPEFLILWWNIFTTNVLPLL 262
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 123/211 (58%), Positives = 152/211 (72%), Gaps = 4/211 (1%)
Query: 8 LLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 67
L VF+ V VDV DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N
Sbjct: 73 LETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLAN 132
Query: 68 CDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLY 127
D+LFDREELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQG+LN +
Sbjct: 133 IDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTF 192
Query: 128 FSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGA 187
FS WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G KPW +D T +
Sbjct: 193 FSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKS 252
Query: 188 ILSG--DSHLTN--FLQLWWDVFVVHVHPTL 214
+ S D ++T+ FL LWW++F +V P L
Sbjct: 253 VKSEAHDPNMTHPEFLILWWNIFTTNVLPLL 283
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 120/208 (57%), Positives = 151/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 120/208 (57%), Positives = 151/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 256 bits (653), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 151/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSF+GGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 122/211 (57%), Positives = 152/211 (72%), Gaps = 4/211 (1%)
Query: 8 LLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 67
L VF+ V VDV DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N
Sbjct: 52 LETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLAN 111
Query: 68 CDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLY 127
D+LFDREELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQG+LN +
Sbjct: 112 IDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTF 171
Query: 128 FSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGA 187
FS WAT D K LPFIYN+ S S +SYLPA K FG+ K++HF+G KPW +D T +
Sbjct: 172 FSSWATTDIRKHLPFIYNLSSISIFSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKS 231
Query: 188 ILSG--DSHLTN--FLQLWWDVFVVHVHPTL 214
+ S D ++T+ FL LWW++F +V P L
Sbjct: 232 VKSEAHDPNMTHPEFLILWWNIFTTNVLPLL 262
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 151/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S +SYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIFSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 150/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSF GGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 150/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGG QGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 122/211 (57%), Positives = 151/211 (71%), Gaps = 4/211 (1%)
Query: 8 LLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 67
L VF+ V VDV DS D +L L+ RP+LG+ TK+H W LTQYSKCVF+DAD L++ N
Sbjct: 52 LETVFDEVIMVDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLAN 111
Query: 68 CDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLY 127
D+LFDREELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQG+LN +
Sbjct: 112 IDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTF 171
Query: 128 FSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGA 187
FS WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G KPW +D T +
Sbjct: 172 FSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKS 231
Query: 188 ILSG--DSHLTN--FLQLWWDVFVVHVHPTL 214
+ S D ++T+ FL LWW++F +V P L
Sbjct: 232 VKSEAHDPNMTHPEFLILWWNIFTTNVLPLL 262
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 255 bits (651), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 150/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+ TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSFDGGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S YSYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 253 bits (645), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 118/208 (56%), Positives = 150/208 (72%), Gaps = 4/208 (1%)
Query: 11 VFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDE 70
VF+ V VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+
Sbjct: 74 VFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD 133
Query: 71 LFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSD 130
LF+REELSAAPD GWPDCFNSGVFV++PS TYN L+ A GSF GGDQGLLN +F+
Sbjct: 134 LFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNS 193
Query: 131 WATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
WAT D K LPFIYN+ S S +SYLPA K FG+ K++HF+G +KPW +D+ T ++ S
Sbjct: 194 WATTDIRKHLPFIYNLSSISIFSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 253
Query: 191 G--DSHLTN--FLQLWWDVFVVHVHPTL 214
D +T+ FL +WWD+F V P L
Sbjct: 254 EGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 142 FIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILSGDSHLTNFLQL 201
F+ + C SY+ SKVK+I + S+ W ++L GD T F QL
Sbjct: 217 FLVDECEDMQLSYI------HSKVKVI-YKAPSENWAMEGGMDPESLLEGDDGKTYFYQL 269
Query: 202 WWD 204
W+D
Sbjct: 270 WYD 272
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 142 FIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILSGDSHLTNFLQL 201
F+ + C SY+ SKVK+I + S+ W ++L GD T F QL
Sbjct: 171 FLVDECEDMQLSYI------HSKVKVI-YKAPSENWAMEGGMDPESLLEGDDGKTYFYQL 223
Query: 202 WWD 204
W+D
Sbjct: 224 WYD 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,791,220
Number of Sequences: 62578
Number of extensions: 276529
Number of successful extensions: 699
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 16
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)