Query psy2336
Match_columns 222
No_of_seqs 128 out of 1139
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 21:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 100.0 3.3E-37 2.4E-41 260.6 12.9 211 4-214 47-261 (263)
2 d1ga8a_ c.68.1.4 (A:) Galactos 100.0 1.4E-28 1E-32 209.2 10.9 156 37-210 80-272 (282)
3 d1o7qa_ c.68.1.9 (A:) alpha-1, 91.6 0.16 1.2E-05 41.2 6.3 111 51-173 136-276 (287)
4 d1lzia_ c.68.1.9 (A:) Glycosyl 87.0 0.18 1.3E-05 40.8 3.1 107 36-147 119-264 (283)
5 d1v9ka_ d.265.1.3 (A:) Ribosom 20.0 88 0.0064 22.7 5.7 60 53-112 1-77 (227)
6 d1u5tb1 a.4.5.54 (B:396-489) V 15.9 23 0.0017 23.1 1.0 11 87-97 83-93 (94)
7 d1ibia1 g.39.1.3 (A:117-144) C 14.6 19 0.0014 18.0 0.2 10 172-181 19-28 (28)
8 d1hf2a1 b.80.3.1 (A:100-206) C 12.9 48 0.0035 21.9 2.1 17 54-70 13-29 (107)
9 d1omza_ c.68.1.15 (A:) Alpha-1 11.9 68 0.0049 21.9 2.9 31 42-72 72-103 (265)
10 d1iy9a_ c.66.1.17 (A:) Spermid 8.2 65 0.0047 24.5 1.5 30 39-68 28-57 (274)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=100.00 E-value=3.3e-37 Score=260.65 Aligned_cols=211 Identities=56% Similarity=1.058 Sum_probs=170.7
Q ss_pred hhHHHhhhCCEEEEEeccCCCccccccccCCCCccchhhhhccCccCCcceEEEEecCeeecCCChhhhCCCCcccccCC
Q psy2336 4 APNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDA 83 (222)
Q Consensus 4 ~~~~L~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~Kl~i~~L~~ydrVLyLDaD~iv~~did~LF~~~~~aav~d~ 83 (222)
.++.|++.+..++.|+.+...+.......++.++.++|+||.+|++.+||||||||||+||++||++||+.+.++|+++.
T Consensus 47 ~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~ 126 (263)
T d1ll2a_ 47 MRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDP 126 (263)
T ss_dssp HHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECS
T ss_pred HHHHHHHhCCcceeEEeecCcchhhhhhhccccchhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccC
Confidence 46889999999999999988766654445567778899999999999999999999999999999999999999999998
Q ss_pred CCCCcccceEEEEeCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHhccccCCCCCCCCcccccccCcccccchHHHhhCC
Q psy2336 84 GWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLNLYFSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGS 163 (222)
Q Consensus 84 ~~~~~fNsGvmli~~~~~~~~~l~~~~~~~~~~~~~DQ~iLN~~~~~~~~~~~~~~Lp~~yN~~~~~~~~~~~~~~~~~~ 163 (222)
+.+.+||||||+++|+..+++.+.+.+.+...+.++||+++|..+.+......+..||..||+.....+.+.+.+.....
T Consensus 127 ~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T d1ll2a_ 127 GWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 206 (263)
T ss_dssp SSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGG
T ss_pred CCcccccCCcEEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcC
Confidence 88899999999999999999999999888877888999999999987432233567899999877655544444455567
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccccc----CCccchHHHHHHHHHHhhccCCcc
Q psy2336 164 KVKIIHFIGSSKPWLQHFDSTTGAILS----GDSHLTNFLQLWWDVFVVHVHPTL 214 (222)
Q Consensus 164 ~~~IiHf~g~~KPW~~~~~~~~~~~~~----~~~~~~~~~~~Ww~~~~~~~~~~~ 214 (222)
+++||||+|..|||+.......+.... ....+..+++.||++|++.++|..
T Consensus 207 ~~~iIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ww~~~~~~~~~~~ 261 (263)
T d1ll2a_ 207 NAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLL 261 (263)
T ss_dssp GCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHH
T ss_pred CeEEEEeCCCCCCCCCCCCCCccccccchhhccccHHHHHHHHHHHHhcccccCC
Confidence 899999999999998764322111111 122456899999999999988754
No 2
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=99.95 E-value=1.4e-28 Score=209.15 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=118.4
Q ss_pred ccchhhhhccCccC-CcceEEEEecCeeecCCChhhhCCC----CcccccCC------------CC---CCcccceEEEE
Q psy2336 37 LGITFTKIHAWRLT-QYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDA------------GW---PDCFNSGVFVF 96 (222)
Q Consensus 37 ~~~~~~Kl~i~~L~-~ydrVLyLDaD~iv~~did~LF~~~----~~aav~d~------------~~---~~~fNsGvmli 96 (222)
...+|.||.+++++ +++||||||||+||++||++||+++ .+||++|. ++ ..||||||||+
T Consensus 80 s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGVml~ 159 (282)
T d1ga8a_ 80 SITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLI 159 (282)
T ss_dssp CGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEE
T ss_pred CHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCceeecceeee
Confidence 34689999999965 7999999999999999999999985 46777662 22 26899999999
Q ss_pred eCCH----HHHHHHHHHHHHc-CCCCCCchHHHHHHHhccccCCCCCCCCcccccccCccc---c-----c-ch---HHH
Q psy2336 97 KPSE----STYNALVEFALVN-GSFDGGDQGLLNLYFSDWATADSSKRLPFIYNMCSTSTY---S-----Y-LP---ALK 159 (222)
Q Consensus 97 ~~~~----~~~~~l~~~~~~~-~~~~~~DQ~iLN~~~~~~~~~~~~~~Lp~~yN~~~~~~~---~-----~-~~---~~~ 159 (222)
|++. ...+++++.+.+. ..+.++||++||.+|++ .+..||.+||++..... . . .+ ...
T Consensus 160 n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~-----~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (282)
T d1ga8a_ 160 NLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG-----GVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRT 234 (282)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHHHHHTT-----SEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHhcccCcccCchhHHHHHhcC-----CEEeCCHHHeeccccccccccccccccchhhhhhhh
Confidence 9864 4677888887765 46678999999999997 23599999998753210 0 0 11 112
Q ss_pred hhCCCcEEEEecCCCCCCCCCCCCCCcccccCCccchHHHHHHHHHHhhcc
Q psy2336 160 QFGSKVKIIHFIGSSKPWLQHFDSTTGAILSGDSHLTNFLQLWWDVFVVHV 210 (222)
Q Consensus 160 ~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~ 210 (222)
....+++||||+|+.|||+..+. ....+.|++++++.-
T Consensus 235 ~~~~~~~iiHf~G~~KPW~~~~~-------------~~~~~~~~~~~~~~~ 272 (282)
T d1ga8a_ 235 NTVMPVAVSHYCGPAKPWHRDCT-------------AWGAERFTELAGSLT 272 (282)
T ss_dssp SCCSSCSEEECCSSCCTTSTTCC-------------STTTHHHHHHHTTCS
T ss_pred hccCCCEEEeeCCCCCCCCCCCC-------------ChhHHHHHHHHHhhh
Confidence 34578999999999999987652 245578999988763
No 3
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=91.61 E-value=0.16 Score=41.16 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=63.5
Q ss_pred CcceEEEEecCeeecCCChh--hhCCC-----Ccccc-c-----C------CCCC-----CcccceEEEEeCCH--HHHH
Q psy2336 51 QYSKCVFLDADVLIVQNCDE--LFDRE-----ELSAA-P-----D------AGWP-----DCFNSGVFVFKPSE--STYN 104 (222)
Q Consensus 51 ~ydrVLyLDaD~iv~~did~--LF~~~-----~~aav-~-----d------~~~~-----~~fNsGvmli~~~~--~~~~ 104 (222)
++|-++++|+||.+.+.+.. |.++- ..... + + +..| -|+.+|+.-=.+.. ++.+
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E~L~~lv~~lHp~~y~~~~~~fpyErrp~S~AyIp~~egd~Yy~G~~~GG~~~~vl~m~~ 215 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVETLGESVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQ 215 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGGGCSSEEEEECTTTTTSCGGGSCCCCCTTSTTCCCTTCCSCCEEEEEEEECHHHHHHHHH
T ss_pred cCCeEEEEeCCceEeccccccccCCccceecccccCCCCCCCCCcCCCCccccccCCCCceEEEeeecCCCHHHHHHHHH
Confidence 78999999999999998852 33221 00000 0 0 0111 36666665433321 2222
Q ss_pred HHHHHHHH---cC-CCCCCchHHHHHHHhccccCCCCCCCCcccccccCcccccchHHHhhCCCcEEEEecCC
Q psy2336 105 ALVEFALV---NG-SFDGGDQGLLNLYFSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGS 173 (222)
Q Consensus 105 ~l~~~~~~---~~-~~~~~DQ~iLN~~~~~~~~~~~~~~Lp~~yN~~~~~~~~~~~~~~~~~~~~~IiHf~g~ 173 (222)
.+-+.+.. ++ .-.+.|..=||.+|-.. .....|++.|++..... ...+++|||+...
T Consensus 216 ~~~~~i~~D~~n~IiA~WHDESHLNkyf~~~---kp~~~LsPeY~~~~~~~---------~~~~~kiv~l~~~ 276 (287)
T d1o7qa_ 216 ECFKGILKDKKNDIEAQWHDESHLNKYFLLN---KPTKILSPEYCWDYHIG---------LPADIKLVKMSWQ 276 (287)
T ss_dssp HHHHHHHHHHHTTCCCTTTHHHHHHHHHHHS---CCSEEECGGGSBCGGGC---------CCTTCCSCSEEEC
T ss_pred HHHHhccCcccCCcceecccHHHHhhHHHhC---CCCcccChhhcCCcccC---------CCCCceEEEEecc
Confidence 33332221 22 33567999999998752 23678999999754321 2467889998753
No 4
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.98 E-value=0.18 Score=40.81 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=53.9
Q ss_pred CccchhhhhccCc-------cCCcceEEEEecCeeecCCCh-hhhCCCCcccccC--------------------CCC--
Q psy2336 36 DLGITFTKIHAWR-------LTQYSKCVFLDADVLIVQNCD-ELFDREELSAAPD--------------------AGW-- 85 (222)
Q Consensus 36 ~~~~~~~Kl~i~~-------L~~ydrVLyLDaD~iv~~did-~LF~~~~~aav~d--------------------~~~-- 85 (222)
|-..+..|+.... +.++|-++++|+||.+.+.+. |.+. + +-|+-. +..
T Consensus 119 Wp~iTL~R~~~i~k~i~~~~~~e~DyLf~~DaDm~f~~~vg~E~L~-~-lvgv~HP~~y~~~~~~~~yErrp~S~AyIp~ 196 (283)
T d1lzia_ 119 WQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILT-P-LFGTLHPGFYGSSREAFTYERRPQSQAYIPK 196 (283)
T ss_dssp ---------------CHHHHHHHCSEEEEECSSEEECSCBCGGGCS-S-EEEEBCTTTTTCCGGGSCCCCCTTSTTCCCT
T ss_pred CchHHHHHHHHHHHHHHHHhhhcCCEEEEeecceEEecccccEEec-C-eeeEecccccCCCCCCCCcccCcceeeeccC
Confidence 3334566666542 237899999999999999886 3331 1 111100 011
Q ss_pred ---CCcccceEEEEeCC--HHHHHHHHHHHHH---cC-CCCCCchHHHHHHHhccccCCCCCCCCcccccc
Q psy2336 86 ---PDCFNSGVFVFKPS--ESTYNALVEFALV---NG-SFDGGDQGLLNLYFSDWATADSSKRLPFIYNMC 147 (222)
Q Consensus 86 ---~~~fNsGvmli~~~--~~~~~~l~~~~~~---~~-~~~~~DQ~iLN~~~~~~~~~~~~~~Lp~~yN~~ 147 (222)
.-|+.+|+.-=... .++.+.+-+.+.+ ++ .-.+.|..=||.+|-.. ...+.|++.|++.
T Consensus 197 ~egd~Yy~G~~~GG~~~~vl~m~~~~~~~i~~D~~n~IiA~WHDEShlNkyf~~n---kp~kvLsPeY~~~ 264 (283)
T d1lzia_ 197 DEGDFYYLGGFFGGSVQEVQRLTRACHQAMMVDQANGIEAVWHDESHLNKYLLRH---KPTKVLSPEYLWD 264 (283)
T ss_dssp TCCSCCBCTTEEEEEHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHS---CCSEEECGGGSBC
T ss_pred CCCCeEEEeeeeCCCHHHHHHHHHHHHHHHHHHhcCCceeeecchhHhhhHHHHC---CCCceeChhhcCC
Confidence 13556665543332 1222333333322 22 33467999999998852 2357899999974
No 5
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=19.95 E-value=88 Score=22.70 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=38.9
Q ss_pred ceEEEEecCeeecCCChhhhCCCCc----c------c-ccCCC-----C-CCcccceEEEEeCCHHHHHHHHHHHHH
Q psy2336 53 SKCVFLDADVLIVQNCDELFDREEL----S------A-APDAG-----W-PDCFNSGVFVFKPSESTYNALVEFALV 112 (222)
Q Consensus 53 drVLyLDaD~iv~~did~LF~~~~~----a------a-v~d~~-----~-~~~fNsGvmli~~~~~~~~~l~~~~~~ 112 (222)
|-|||=|.|+||+....-+-..+.- . + .++.. + -+.--||+||+-.+......+.+.+.+
T Consensus 1 ~~IlyeD~~ilvvnKP~gl~~h~~~~~~~~~~~~l~~~~~~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~ 77 (227)
T d1v9ka_ 1 DVIMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 77 (227)
T ss_dssp CCEEEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEEeCCCEEEEECCCCCccCCCCCCcchHHHHHHHhCCCCcccceeeeccceeeeeeeeecchHHHHHHHHHHhc
Confidence 5699999999998766655433210 0 0 01110 1 156689999999998887777776654
No 6
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.86 E-value=23 Score=23.13 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=9.5
Q ss_pred CcccceEEEEe
Q psy2336 87 DCFNSGVFVFK 97 (222)
Q Consensus 87 ~~fNsGvmli~ 97 (222)
.-|+||||++.
T Consensus 83 r~f~sgvlvv~ 93 (94)
T d1u5tb1 83 VKVNKRILCVT 93 (94)
T ss_dssp EEETTTEEEEE
T ss_pred EEecCceEEee
Confidence 57999999985
No 7
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=14.60 E-value=19 Score=17.95 Aligned_cols=10 Identities=40% Similarity=1.102 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q psy2336 172 GSSKPWLQHF 181 (222)
Q Consensus 172 g~~KPW~~~~ 181 (222)
|..|||+..|
T Consensus 19 GaG~~WHk~C 28 (28)
T d1ibia1 19 GAGKPWHKNC 28 (28)
T ss_dssp SSSSEECSSC
T ss_pred cCCCccccCC
Confidence 6689998653
No 8
>d1hf2a1 b.80.3.1 (A:100-206) Cell-division inhibitor MinC, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.90 E-value=48 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.8
Q ss_pred eEEEEecCeeecCCChh
Q psy2336 54 KCVFLDADVLIVQNCDE 70 (222)
Q Consensus 54 rVLyLDaD~iv~~did~ 70 (222)
..|+.|.|++|++|+.+
T Consensus 13 q~i~~~gdviIlGdVn~ 29 (107)
T d1hf2a1 13 QTVVHSGDVIVFGNVNK 29 (107)
T ss_dssp EEEEESSCEEESSCBCT
T ss_pred CEEEeCCCEEEEecCCC
Confidence 34667999999999964
No 9
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.93 E-value=68 Score=21.95 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=21.9
Q ss_pred hhhccCccCCcceEEEEecCeeecCC-Chhhh
Q psy2336 42 TKIHAWRLTQYSKCVFLDADVLIVQN-CDELF 72 (222)
Q Consensus 42 ~Kl~i~~L~~ydrVLyLDaD~iv~~d-id~LF 72 (222)
.+-...+....|-|++||+|.++..+ |..+.
T Consensus 72 a~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~ 103 (265)
T d1omza_ 72 NRLQVFPEVETNAVLMVDDDTLISAQDLVFAF 103 (265)
T ss_dssp GGGSCCTTCCSSEEEEECTTEEECHHHHHHHH
T ss_pred hhhhhHHhCCcCEEEEeCcccCCCHHHHHHHH
Confidence 34444555578999999999999876 44443
No 10
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=8.22 E-value=65 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=24.8
Q ss_pred chhhhhccCccCCcceEEEEecCeeecCCC
Q psy2336 39 ITFTKIHAWRLTQYSKCVFLDADVLIVQNC 68 (222)
Q Consensus 39 ~~~~Kl~i~~L~~ydrVLyLDaD~iv~~di 68 (222)
+.|.++.+++...+.|+|+||.++.+...-
T Consensus 28 s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~d 57 (274)
T d1iy9a_ 28 TEFQHLEMVETEEFGNMLFLDGMVMTSEKD 57 (274)
T ss_dssp CSSCEEEEEEETTTEEEEEETTEEEEETTT
T ss_pred CCCcEEEEEEcCCcCeEEEECCceeeecCc
Confidence 457888899988889999999999876543
Done!