RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2336
         (222 letters)



>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 263

 Score =  168 bits (426), Expect = 1e-52
 Identities = 119/214 (55%), Positives = 148/214 (69%), Gaps = 4/214 (1%)

Query: 6   NELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIV 65
             L  VF+ V  VD+ DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++
Sbjct: 49  KALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVL 108

Query: 66  QNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDGGDQGLLN 125
            N D+LF+REELSAAPD GWPDCFNSGVFV++PS  TYN L+  A   GSFDGGDQGLLN
Sbjct: 109 ANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLN 168

Query: 126 LYFSDWATADSSKRLPFIYNMCSTSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTT 185
            +F+ WAT D  K LPFIYN+ S S YSYLPA K FG+  K++HF+G +KPW   +D+ T
Sbjct: 169 TFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKT 228

Query: 186 GAILSG----DSHLTNFLQLWWDVFVVHVHPTLT 215
            ++ S           FL +WWD+F   V P L 
Sbjct: 229 KSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQ 262


>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
           meningitidis [TaxId: 487]}
          Length = 282

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 34/213 (15%), Positives = 56/213 (26%), Gaps = 42/213 (19%)

Query: 6   NELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRL-TQYSKCVFLDADVLI 64
              L+           +  D     L  R     T+ ++          K ++LD DVL+
Sbjct: 49  AANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLV 108

Query: 65  VQNCDELFDRE----ELSAAPDAGWPDC---------------FNSGVFVFKPSE----- 100
             +   L+D +     L A+ D                     FN+GV +    +     
Sbjct: 109 RDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHD 168

Query: 101 STYNALVEFALVNGSFDGGDQGLLNLYFSDWATADSSKRLPFIYNMC------------S 148
               +              DQ +LN  F               +N              S
Sbjct: 169 IFKMSSEWVEQYKDVMQYQDQDILNGLF-----KGGVCYANSRFNFMPTNYAFMANWFAS 223

Query: 149 TSTYSYLPALKQFGSKVKIIHFIGSSKPWLQHF 181
             T             V + H+ G +KPW +  
Sbjct: 224 RHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDC 256


>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional
           repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 27.1 bits (60), Expect = 0.52
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 151 TYSYLPALKQFGSKVKIIHFIGSSKPWLQHFDSTTGAILS 190
           TY   P   +  SKV++  ++G +   L  FD   G +  
Sbjct: 33  TYYQSPTGDRIRSKVELTRYLGPACD-LTLFDFKQGILCY 71


>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
           K1F [TaxId: 344021]}
          Length = 516

 Score = 25.8 bits (56), Expect = 5.3
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 127 YFSDWATADSSKRLPFIYNMCSTSTYSYLPALKQ 160
           +F+ W   D+S + PF  +   +  Y Y   +  
Sbjct: 479 HFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGP 512


>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
           [TaxId: 11103]}
          Length = 530

 Score = 25.5 bits (56), Expect = 6.8
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 4/57 (7%)

Query: 45  HAWRLTQYSKCVFL---DADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKP 98
            A R  +   C  L   D  V+I ++     D   L    +A             +P
Sbjct: 301 AACRAAKLQDCTMLVNGDDLVVICESAGTQEDAASLRVFTEAMTR-YSAPPGDPPQP 356


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 871,901
Number of extensions: 38970
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 8
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)