BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2339
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py
           Motif Containing Peptide
          Length = 90

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query: 29  EGWDMATTAEGETYFINHTTRTTSWFDPRIPKXXXXXXXXXXXXXXXXWDMATTAEGETY 88
           EG++  TT +G+ YF++  T  ++W DPR+P+                W++  TA G  Y
Sbjct: 12  EGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVY 71

Query: 89  FINHTTRTTSWFDPRI 104
           F++H  RTT + DPR+
Sbjct: 72  FVDHNNRTTQFTDPRL 87



 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGIN 112
           ++  TT +G+ YF++  T  ++W DPR+PR    IN
Sbjct: 14  YEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNIN 49


>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of
           Deltex
          Length = 88

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 29  EGWDMATTAEGETYFINHTTRTTSWFDPRIPKXXXXXXXXXXXXXXXXWDMATTAEGETY 88
           +GW+    ++   YF+NH  RTT W DPR                   W++  TA GE +
Sbjct: 15  DGWEKKIQSDNRVYFVNHKNRTTQWEDPRT--QGQEVSLINEGPLPPGWEIRYTAAGERF 72

Query: 89  FINHTTRTTSWFDPR 103
           F++H TR T++ DPR
Sbjct: 73  FVDHNTRRTTFEDPR 87


>pdb|2L4J|A Chain A, Yap Ww2
          Length = 46

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPRI 58
          EGW+ A T EGE Y+INH  +TTSW DPR+
Sbjct: 14 EGWEQAITPEGEIYYINHKNKTTSWLDPRL 43



 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+ A T EGE Y+INH  +TTSW DPR+
Sbjct: 16  WEQAITPEGEIYYINHKNKTTSWLDPRL 43


>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human
          Membrane-Associated Guanylate Kinase, Ww And Pdz
          Domain- Containing Protein 1. Magi-1
          Length = 57

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPR 57
          E W+MA T  GE YFI+H T+TTSW DPR
Sbjct: 17 ENWEMAYTENGEVYFIDHNTKTTSWLDPR 45



 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 21/27 (77%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+MA T  GE YFI+H T+TTSW DPR
Sbjct: 19  WEMAYTENGEVYFIDHNTKTTSWLDPR 45


>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
          Complex With A Human Smad1 Derived Peptide
          Length = 38

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPRI 58
          +GW+ A T +GE Y+INH  +TTSW DPR+
Sbjct: 9  DGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38



 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+ A T +GE Y+INH  +TTSW DPR+
Sbjct: 11  WEQAMTQDGEIYYINHKNKTTSWLDPRL 38


>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
          Length = 36

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPRI 58
          +GW+ A T +GE Y+INH  +TTSW DPR+
Sbjct: 5  DGWEQAMTQDGEIYYINHKNKTTSWLDPRL 34



 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+ A T +GE Y+INH  +TTSW DPR+
Sbjct: 7   WEQAMTQDGEIYYINHKNKTTSWLDPRL 34


>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site
          Within The Catalytic Domain Of A Hect Ubiquitin Ligase
          Length = 429

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRIP 59
          GW+M  T     YF++H T+TT+W DPR+P
Sbjct: 12 GWEMRLTNTARVYFVDHNTKTTTWDDPRLP 41



 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
           W+M  T     YF++H T+TT+W DPR+P S
Sbjct: 13  WEMRLTNTARVYFVDHNTKTTTWDDPRLPSS 43


>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex
          With A Human Smad1 Doubly-Phosphorilated Derived
          Peptide
          Length = 40

 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 11 GWEMAKTSSGQRYFLNHIDQTTTWQDPR 38



 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 12  WEMAKTSSGQRYFLNHIDQTTTWQDPR 38


>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex
          With A Phosphorylated Human Smad1 Derived Peptide
 pdb|2LTW|A Chain A, Yap Ww1 In Complex With A Smad7 Derived Peptide
          Length = 36

 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 7  GWEMAKTSSGQRYFLNHIDQTTTWQDPR 34



 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 8   WEMAKTSSGQRYFLNHIDQTTTWQDPR 34


>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2
 pdb|1K9R|A Chain A, Yap65 Ww Domain Complexed To Acetyl-Plppy
          Length = 40

 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 12 GWEMAKTSSGQRYFLNHIDQTTTWQDPR 39



 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 13  WEMAKTSSGQRYFLNHIDQTTTWQDPR 39


>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid
          Mutant
          Length = 41

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 12 GWEMAKTSXGQRYFLNHIDQTTTWQDPR 39



 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+MA T+ G+ YF+NH  +TT+W DPR
Sbjct: 13  WEMAKTSXGQRYFLNHIDQTTTWQDPR 39


>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3
           Ubiq Protein Ligase Hecw1
          Length = 109

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 24/30 (80%)

Query: 30  GWDMATTAEGETYFINHTTRTTSWFDPRIP 59
           GW++ T  +G+++F++H +R T++ DPRIP
Sbjct: 76  GWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105



 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 23/29 (79%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIP 105
           W++ T  +G+++F++H +R T++ DPRIP
Sbjct: 77  WEIKTDQQGKSFFVDHNSRATTFIDPRIP 105


>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg
          Peptide
          Length = 46

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+MA T+ G+ YF NH  +TT+W DPR
Sbjct: 12 GWEMAKTSSGQRYFKNHIDQTTTWQDPR 39



 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+MA T+ G+ YF NH  +TT+W DPR
Sbjct: 13  WEMAKTSSGQRYFKNHIDQTTTWQDPR 39


>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
           Yeast Splicing Factor Prp40
          Length = 75

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 31  WDMATTAEGETYFINHTTRTTSWFDPRIPKXXXXXXXXXXXXXXXXWDMATTAEGETYFI 90
           W  A  A G  Y+ N  T+ ++W  P+                   W  A TA+G+ Y+ 
Sbjct: 4   WKEAKDASGRIYYYNTLTKKSTWEKPK-----ELISQEELLLRENGWKAAKTADGKVYYY 58

Query: 91  NHTTRTTSWFDPRIPR 106
           N TTR TSW  P   +
Sbjct: 59  NPTTRETSWTIPAFEK 74



 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRIPK 60
          GW  A TA+G+ Y+ N TTR TSW  P   K
Sbjct: 44 GWKAAKTADGKVYYYNPTTRETSWTIPAFEK 74


>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human
          Syntaxin- Binding Protein 4
          Length = 40

 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+ A TA+G  YFINH T+TTSW  P +
Sbjct: 11 GWEEAYTADGIKYFINHVTQTTSWIHPVM 39



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+ A TA+G  YFINH T+TTSW  P +
Sbjct: 12  WEEAYTADGIKYFINHVTQTTSWIHPVM 39


>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
          Virus Latent Membrane Protein 2a Derived Peptide
          Eeppppyed
 pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
          Length = 37

 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+  T + G  YF+NH TR T W DPR
Sbjct: 9  GWEKRTDSNGRVYFVNHNTRITQWEDPR 36



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+  T + G  YF+NH TR T W DPR
Sbjct: 10  WEKRTDSNGRVYFVNHNTRITQWEDPR 36


>pdb|2OP7|A Chain A, Ww4
          Length = 39

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPR 57
          EGW++  T EG  YF++H TRTT++ DPR
Sbjct: 7  EGWEIRYTREGVRYFVDHNTRTTTFKDPR 35



 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
           W++  T EG  YF++H TRTT++ DPR  +S
Sbjct: 9   WEIRYTREGVRYFVDHNTRTTTFKDPRNGKS 39


>pdb|1E0M|A Chain A, Prototype Ww Domain
          Length = 37

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GWD   T  G+TY+ NH T+T++W DPR+
Sbjct: 7  GWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35



 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           WD   T  G+TY+ NH T+T++W DPR+
Sbjct: 8   WDEYKTHNGKTYYYNHNTKTSTWTDPRM 35


>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The
          Human E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch
          Length = 40

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPR 57
          EGW+M  T +G  YF++H  RTT++ DPR
Sbjct: 10 EGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38



 Score = 34.3 bits (77), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+M  T +G  YF++H  RTT++ DPR
Sbjct: 12  WEMRFTVDGIPYFVDHNRRTTTYIDPR 38


>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2
          Length = 41

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+M     G  +FI+H T+TT+W DPR+
Sbjct: 12 GWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40



 Score = 35.4 bits (80), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+M     G  +FI+H T+TT+W DPR+
Sbjct: 13  WEMRIAPNGRPFFIDHNTKTTTWEDPRL 40


>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide
          Complex
          Length = 42

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW++  TA G  YF++H  RTT + DPR+
Sbjct: 11 GWEIRNTATGRVYFVDHNNRTTQFTDPRL 39



 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W++  TA G  YF++H  RTT + DPR+
Sbjct: 12  WEIRNTATGRVYFVDHNNRTTQFTDPRL 39


>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived
          Peptide
          Length = 37

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW++  TA G  YF++H  RTT + DPR+
Sbjct: 6  GWEIRNTATGRVYFVDHNNRTTQFTDPRL 34



 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W++  TA G  YF++H  RTT + DPR+
Sbjct: 7   WEIRNTATGRVYFVDHNNRTTQFTDPRL 34


>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
          Length = 37

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW+  T + G  YF+NH TR   W DPR
Sbjct: 9  GWEKRTDSNGRVYFVNHNTRIXQWEDPR 36



 Score = 35.0 bits (79), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W+  T + G  YF+NH TR   W DPR
Sbjct: 10  WEKRTDSNGRVYFVNHNTRIXQWEDPR 36


>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy
           Peptide Complex
          Length = 46

 Score = 36.2 bits (82), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
           W M     G T+FI+H +R T+W DPR  R+
Sbjct: 15  WSMQVAPNGRTFFIDHASRRTTWIDPRNGRA 45



 Score = 36.2 bits (82), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 31 WDMATTAEGETYFINHTTRTTSWFDPR 57
          W M     G T+FI+H +R T+W DPR
Sbjct: 15 WSMQVAPNGRTFFIDHASRRTTWIDPR 41


>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide
          Complex
          Length = 53

 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPR 57
          GW++  TA GE +F++H TR T++ DPR
Sbjct: 22 GWEIRYTAAGERFFVDHNTRRTTFEDPR 49



 Score = 33.9 bits (76), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPR 103
           W++  TA GE +F++H TR T++ DPR
Sbjct: 23  WEIRYTAAGERFFVDHNTRRTTFEDPR 49


>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell
          Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide
          Sdpqipppyvep
 pdb|2KQ0|A Chain A, Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus
          Matrix Protein Vp40 Derived Peptide Ilptappeymea
          Length = 49

 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPRI 58
          +GW++     G  +FI+H T+TT+W DPR+
Sbjct: 15 KGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44



 Score = 33.5 bits (75), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W++     G  +FI+H T+TT+W DPR+
Sbjct: 17  WEVRHAPNGRPFFIDHNTKTTTWEDPRL 44


>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly
          Phosphorylated Human Smad3 Derived Peptide
          Length = 44

 Score = 35.4 bits (80), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+M     G  +F +H T+TT+W DPR+
Sbjct: 11 GWEMRIAPNGRPFFYDHNTKTTTWEDPRL 39



 Score = 33.1 bits (74), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+M     G  +F +H T+TT+W DPR+
Sbjct: 12  WEMRIAPNGRPFFYDHNTKTTTWEDPRL 39


>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In
          Complex With A Human Smad1 Derived Peptide
          Length = 35

 Score = 35.0 bits (79), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW++ +T  G  YF++H  RTT + DPR+
Sbjct: 7  GWEVRSTVSGRIYFVDHNNRTTQFTDPRL 35



 Score = 33.1 bits (74), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W++ +T  G  YF++H  RTT + DPR+
Sbjct: 8   WEVRSTVSGRIYFVDHNNRTTQFTDPRL 35


>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
          Peptide Complex
          Length = 50

 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+  T  +G  +FINH  + T W DPR+
Sbjct: 15 GWEERTHTDGRVFFINHNIKKTQWEDPRM 43



 Score = 32.7 bits (73), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+  T  +G  +FINH  + T W DPR+
Sbjct: 16  WEERTHTDGRVFFINHNIKKTQWEDPRM 43


>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox
          Length = 54

 Score = 34.3 bits (77), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+  T   G+ +F++H  + T++ DPR+
Sbjct: 15 GWEQETDENGQVFFVDHINKRTTYLDPRL 43



 Score = 32.0 bits (71), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+  T   G+ +F++H  + T++ DPR+
Sbjct: 16  WEQETDENGQVFFVDHINKRTTYLDPRL 43


>pdb|2LB0|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
          Complex With A Di- Phosphorylated Human Smad1 Derived
          Peptide
          Length = 36

 Score = 34.3 bits (77), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPRI 58
          EG++  TT +G+ YF++  T  ++W DPRI
Sbjct: 7  EGYEQRTTVQGQVYFLHTQTGVSTWHDPRI 36



 Score = 30.4 bits (67), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           ++  TT +G+ YF++  T  ++W DPRI
Sbjct: 9   YEQRTTVQGQVYFLHTQTGVSTWHDPRI 36


>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived
          Peptide
          Length = 35

 Score = 34.3 bits (77), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW++ +T  G  YF++H  RTT + DPR+
Sbjct: 6  GWEVRSTVSGRIYFVDHNNRTTQFTDPRL 34



 Score = 32.3 bits (72), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W++ +T  G  YF++H  RTT + DPR+
Sbjct: 7   WEVRSTVSGRIYFVDHNNRTTQFTDPRL 34


>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In
          Complex With A Phosphorylated Ptpy Motif Derived From
          Human Smad3
          Length = 35

 Score = 34.3 bits (77), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDP 56
          GW+    A+G TY++NH  RTT+W  P
Sbjct: 5  GWEERKDAKGRTYYVNHNNRTTTWTRP 31



 Score = 32.0 bits (71), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDP 102
           W+    A+G TY++NH  RTT+W  P
Sbjct: 6   WEERKDAKGRTYYVNHNNRTTTWTRP 31


>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived
          Peptide
          Length = 34

 Score = 33.9 bits (76), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDP 56
          GW+    A+G TY++NH  RTT+W  P
Sbjct: 6  GWEERKDAKGRTYYVNHNNRTTTWTRP 32



 Score = 32.0 bits (71), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDP 102
           W+    A+G TY++NH  RTT+W  P
Sbjct: 7   WEERKDAKGRTYYVNHNNRTTTWTRP 32


>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
          Length = 36

 Score = 33.9 bits (76), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDP 56
          GW+    A+G TY++NH  RTT+W  P
Sbjct: 8  GWEERKDAKGRTYYVNHNNRTTTWTRP 34



 Score = 32.0 bits (71), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDP 102
           W+    A+G TY++NH  RTT+W  P
Sbjct: 9   WEERKDAKGRTYYVNHNNRTTTWTRP 34


>pdb|2LAZ|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
          Complex With A Mono-Phosphorylated Human Smad1 Derived
          Peptide
          Length = 33

 Score = 33.5 bits (75), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 29 EGWDMATTAEGETYFINHTTRTTSWFDPRI 58
          EG++  TT +G+ YF++  T  ++W DPRI
Sbjct: 4  EGYEQRTTVQGQVYFLHTQTGVSTWHDPRI 33



 Score = 29.6 bits (65), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           ++  TT +G+ YF++  T  ++W DPRI
Sbjct: 6   YEQRTTVQGQVYFLHTQTGVSTWHDPRI 33


>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
          Length = 92

 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 31  WDMATTAEGETYFINHTTRTTSWFDPRIPKXXXXXXXXXXXXXXXXWDMATTAEGETYFI 90
           W    + +G TY+ N  T+ ++W  P   K                W    +  G+TY+ 
Sbjct: 16  WTEHKSPDGRTYYYNTETKQSTWEKPDDLK-----TPAEQLLSKCPWKEYKSDSGKTYYY 70

Query: 91  NHTTRTTSWFDPRIPRSHHGIN 112
           N  T+ + W  P+      G+ 
Sbjct: 71  NSQTKESRWAKPKELEDLEGLE 92


>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
           With A Beta-Dystroglycan Peptide
 pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
           With A Beta-Dystroglycan Peptide
          Length = 261

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGINPWKNKK 118
           W+ A +     Y+INH T+TT W  P++   +  +    N +
Sbjct: 16  WERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVR 57



 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 31 WDMATTAEGETYFINHTTRTTSWFDPRI 58
          W+ A +     Y+INH T+TT W  P++
Sbjct: 16 WERAISPNKVPYYINHETQTTCWDHPKM 43


>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
          Length = 162

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDP 56
          GW+   +A+G  Y+ NH T  + W  P
Sbjct: 10 GWEKRMSADGRVYYFNHITNASQWERP 36



 Score = 28.5 bits (62), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGIN 112
           W+   +A+G  Y+ NH T  + W  P    S  G N
Sbjct: 11  WEKRMSADGRVYYFNHITNASQWERPSGNSSSGGKN 46


>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
          Coupling Analysis
          Length = 43

 Score = 29.3 bits (64), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+  T  EG+ Y+ N  T TT+W  P I
Sbjct: 12 GWERRTDVEGKVYYFNVRTLTTTWERPTI 40



 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+  T  EG+ Y+ N  T TT+W  P I
Sbjct: 13  WERRTDVEGKVYYFNVRTLTTTWERPTI 40


>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
          Length = 36

 Score = 28.9 bits (63), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+      G TY++NH  R+T W  P +
Sbjct: 8  GWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36



 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+      G TY++NH  R+T W  P +
Sbjct: 9   WEEKVDNLGRTYYVNHNNRSTQWHRPSL 36


>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
          The Interaction Between Aip4ww2domain And Py Motif
          Length = 39

 Score = 28.9 bits (63), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58
          GW+      G  Y+++H TRTT+W  P +
Sbjct: 10 GWERRVDNMGRIYYVDHFTRTTTWQRPTL 38



 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRI 104
           W+      G  Y+++H TRTT+W  P +
Sbjct: 11  WERRVDNMGRIYYVDHFTRTTTWQRPTL 38


>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
          Salvador Homolog 1 Protein (Sav1)
          Length = 49

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDP 56
          GW +  T  G  Y+I+H T TT W  P
Sbjct: 15 GWSVDWTMRGRKYYIDHNTNTTHWSHP 41



 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDP 102
           W +  T  G  Y+I+H T TT W  P
Sbjct: 16  WSVDWTMRGRKYYIDHNTNTTHWSHP 41


>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
          Homolog E3 Ubiquitin Protein Ligase (Itch)
          Length = 43

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRIP 59
          GW+      G  Y+++H  + T+W  P  P
Sbjct: 11 GWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40



 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 77  WDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
           W+      G  Y+++H  + T+W  P  P S
Sbjct: 12  WEQRVDQHGRVYYVDHVEKRTTWDRPSGPSS 42


>pdb|2DWV|A Chain A, Solution Structure Of The Second Ww Domain From Mouse
          Salvador Homolog 1 Protein (Mww45)
 pdb|2DWV|B Chain B, Solution Structure Of The Second Ww Domain From Mouse
          Salvador Homolog 1 Protein (Mww45)
          Length = 49

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRIP 59
          GW+   ++E  TY+++HT +   +  P  P
Sbjct: 17 GWERVESSEFGTYYVDHTNKRAQYRHPSGP 46


>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
 pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
          Length = 158

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30 GWDMATT-AEGETYFINHTTRTTSWFDP 56
          GW+ A + + G  Y+ NH T  + W  P
Sbjct: 5  GWEKAMSRSSGRVYYFNHITNASQWERP 32


>pdb|2AR1|A Chain A, Structure Of Hypothetical Protein From Leishmania Major
          Length = 172

 Score = 25.4 bits (54), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 95  RTTSWFDPRIPRSHHGINPWKNKKIKFI 122
           +T+ +FDP+  +     NPWK   +KF+
Sbjct: 96  KTSEYFDPKATKEK---NPWKMVDVKFV 120


>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
          Cis-Trans Isomerase
 pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
          Pin1 By Epigallocatechin-3-Gallate
          Length = 163

 Score = 25.4 bits (54), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30 GWDMATT-AEGETYFINHTTRTTSWFDP 56
          GW+ A + + G  Y+ NH T  + W  P
Sbjct: 10 GWEKAMSRSSGRVYYFNHITNASQWERP 37


>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
          Domains By O- Phosphorylated Natural Product
          Derivatives
          Length = 166

 Score = 25.4 bits (54), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30 GWDMATT-AEGETYFINHTTRTTSWFDP 56
          GW+ A + + G  Y+ NH T  + W  P
Sbjct: 13 GWEKAMSRSSGRVYYFNHITNASQWERP 40


>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
 pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
 pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
 pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
          Length = 167

 Score = 25.4 bits (54), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30 GWDMATT-AEGETYFINHTTRTTSWFDP 56
          GW+ A + + G  Y+ NH T  + W  P
Sbjct: 14 GWEKAMSRSSGRVYYFNHITNASQWERP 41


>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
          Inhibitors
 pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
          Inhibitors By Structure-Guided Fragment Evolution
          Length = 167

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30 GWDMATT-AEGETYFINHTTRTTSWFDP 56
          GW+ A + + G  Y+ NH T  + W  P
Sbjct: 14 GWEKAMSRSSGRVYYFNHITNASQWERP 41


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,063,479
Number of Sequences: 62578
Number of extensions: 82817
Number of successful extensions: 297
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 123
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)