Query psy2339
Match_columns 125
No_of_seqs 129 out of 1255
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:03:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1891|consensus 99.7 2.1E-17 4.4E-22 122.4 5.6 73 22-105 89-161 (271)
2 KOG3209|consensus 99.4 7.8E-14 1.7E-18 117.0 4.7 86 21-106 217-302 (984)
3 PF00397 WW: WW domain; Inter 99.3 1.1E-12 2.4E-17 69.5 3.8 30 73-102 1-31 (31)
4 smart00456 WW Domain with 2 co 99.3 7.7E-12 1.7E-16 66.4 4.4 32 73-104 1-32 (32)
5 PF00397 WW: WW domain; Inter 99.2 7.1E-12 1.5E-16 66.4 3.4 30 27-56 1-31 (31)
6 cd00201 WW Two conserved trypt 99.2 5.7E-11 1.2E-15 62.4 4.3 31 74-104 1-31 (31)
7 smart00456 WW Domain with 2 co 99.1 7.2E-11 1.6E-15 62.6 4.3 31 27-57 1-31 (32)
8 COG5104 PRP40 Splicing factor 99.1 1.3E-11 2.8E-16 99.3 -0.8 72 29-105 15-86 (590)
9 cd00201 WW Two conserved trypt 99.0 6.3E-10 1.4E-14 58.3 4.2 30 28-57 1-30 (31)
10 KOG3209|consensus 98.9 1.3E-09 2.7E-14 92.1 5.9 85 21-105 127-255 (984)
11 KOG0155|consensus 98.5 1.6E-07 3.5E-12 77.1 6.2 76 28-103 11-142 (617)
12 KOG3259|consensus 98.4 1.2E-07 2.7E-12 66.5 1.6 36 71-106 5-41 (163)
13 KOG1891|consensus 98.4 2.8E-07 6E-12 68.9 2.8 35 70-104 91-125 (271)
14 KOG3259|consensus 98.4 2.1E-07 4.5E-12 65.3 2.0 36 25-60 5-41 (163)
15 KOG0940|consensus 98.3 1.2E-06 2.5E-11 70.0 6.5 80 25-105 59-146 (358)
16 COG5104 PRP40 Splicing factor 96.9 0.00032 6.8E-09 57.3 0.5 28 75-102 15-42 (590)
17 COG5021 HUL4 Ubiquitin-protein 94.1 0.0072 1.6E-07 53.4 -1.8 81 25-105 386-479 (872)
18 KOG3552|consensus 93.8 0.017 3.7E-07 51.3 -0.1 51 49-106 3-53 (1298)
19 KOG4286|consensus 93.5 0.021 4.5E-07 49.6 -0.0 29 77-105 354-382 (966)
20 KOG0940|consensus 93.4 0.11 2.3E-06 41.9 3.9 37 69-105 57-97 (358)
21 KOG4334|consensus 92.6 0.15 3.2E-06 42.7 3.6 37 68-104 150-186 (650)
22 KOG4286|consensus 91.1 0.062 1.4E-06 46.8 -0.1 29 30-58 353-381 (966)
23 KOG0155|consensus 91.0 0.21 4.5E-06 42.0 2.8 33 74-106 11-43 (617)
24 KOG4334|consensus 89.8 0.38 8.2E-06 40.3 3.4 36 24-59 152-187 (650)
25 KOG3552|consensus 89.5 0.092 2E-06 46.9 -0.3 47 10-59 6-52 (1298)
26 COG5021 HUL4 Ubiquitin-protein 83.8 0.093 2E-06 46.6 -3.4 84 22-105 294-420 (872)
27 smart00391 MBD Methyl-CpG bind 81.9 2 4.4E-05 26.9 3.1 25 25-49 6-38 (77)
28 smart00391 MBD Methyl-CpG bind 79.3 2.8 6.2E-05 26.3 3.1 32 72-104 7-46 (77)
29 cd01396 MeCP2_MBD MeCP2, MBD1, 79.0 3.8 8.2E-05 25.7 3.6 26 71-96 5-37 (77)
30 cd00122 MBD MeCP2, MBD1, MBD2, 78.5 3.7 8E-05 24.4 3.3 25 25-49 4-35 (62)
31 PF01429 MBD: Methyl-CpG bindi 69.6 7 0.00015 24.3 3.1 33 71-104 9-49 (77)
32 KOG0150|consensus 67.0 4 8.6E-05 32.4 1.9 30 76-105 152-181 (336)
33 cd01397 HAT_MBD Methyl-CpG bin 65.4 8.9 0.00019 23.9 2.9 25 25-49 4-35 (73)
34 KOG0150|consensus 58.3 7 0.00015 31.0 1.8 32 30-61 152-183 (336)
35 PRK11138 outer membrane biogen 47.8 57 0.0012 25.8 5.6 29 75-103 335-363 (394)
36 TIGR03300 assembly_YfgL outer 43.7 73 0.0016 24.8 5.6 62 36-105 248-309 (377)
37 KOG3427|consensus 41.3 8.2 0.00018 28.8 -0.2 37 24-60 5-42 (222)
38 PRK11138 outer membrane biogen 41.1 61 0.0013 25.6 4.8 62 36-103 127-188 (394)
39 KOG3427|consensus 39.7 9.4 0.0002 28.5 -0.1 36 71-106 6-42 (222)
40 TIGR03300 assembly_YfgL outer 39.2 64 0.0014 25.2 4.6 62 36-103 112-173 (377)
41 smart00564 PQQ beta-propeller 39.1 35 0.00076 16.6 2.1 21 35-55 12-32 (33)
42 KOG1450|consensus 30.9 1.2E+02 0.0026 26.6 5.1 76 29-104 271-357 (650)
43 PF12905 Glyco_hydro_101: Endo 28.0 25 0.00055 29.1 0.6 21 83-103 381-401 (425)
44 PF13360 PQQ_2: PQQ-like domai 26.8 1.8E+02 0.004 20.5 5.0 57 37-100 181-237 (238)
45 COG3828 Uncharacterized protei 25.6 82 0.0018 23.7 2.9 33 72-105 172-204 (239)
46 PF13670 PepSY_2: Peptidase pr 23.1 90 0.0019 19.2 2.4 22 76-97 55-79 (83)
47 PF07202 Tcp10_C: T-complex pr 22.3 2.9E+02 0.0063 20.1 5.2 27 32-58 39-65 (179)
48 PF12905 Glyco_hydro_101: Endo 21.6 57 0.0012 27.0 1.5 21 38-58 382-402 (425)
49 cd00216 PQQ_DH Dehydrogenases 21.4 3.5E+02 0.0076 22.3 6.2 67 36-102 68-137 (488)
50 cd00216 PQQ_DH Dehydrogenases 21.3 2.9E+02 0.0062 22.8 5.7 67 37-103 364-434 (488)
No 1
>KOG1891|consensus
Probab=99.70 E-value=2.1e-17 Score=122.35 Aligned_cols=73 Identities=36% Similarity=0.720 Sum_probs=67.4
Q ss_pred CCCCCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCC
Q psy2339 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFD 101 (125)
Q Consensus 22 ~~~~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~ 101 (125)
.+..|||+||...++..||.|||+|++++|.|.+|... ..||+||+.++++.-.+||+|+.+|++|+++
T Consensus 89 sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPler-----------EgLppGW~rv~s~e~GtyY~~~~~k~tQy~H 157 (271)
T KOG1891|consen 89 SEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLER-----------EGLPPGWKRVFSPEKGTYYYHEEMKRTQYEH 157 (271)
T ss_pred cccCCCCCCcceeeEecCceeEeecCCCcccccChhhh-----------ccCCcchhhccccccceeeeecccchhhhcC
Confidence 34478999999999999999999999999999999775 3599999999999999999999999999999
Q ss_pred CCCC
Q psy2339 102 PRIP 105 (125)
Q Consensus 102 Pr~~ 105 (125)
|.+.
T Consensus 158 Pc~~ 161 (271)
T KOG1891|consen 158 PCIS 161 (271)
T ss_pred CCCC
Confidence 9985
No 2
>KOG3209|consensus
Probab=99.44 E-value=7.8e-14 Score=116.99 Aligned_cols=86 Identities=38% Similarity=0.784 Sum_probs=77.2
Q ss_pred CCCCCCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCC
Q psy2339 21 PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWF 100 (125)
Q Consensus 21 ~~~~~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~ 100 (125)
.+.+++||..|+++++..|.+||++|+|++|+|.+|+..+.+..........||.||+..-++....||++|.++.|+++
T Consensus 217 e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~e 296 (984)
T KOG3209|consen 217 EDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYE 296 (984)
T ss_pred ccccCCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhc
Confidence 46678899999999999999999999999999999998776665555667789999999999999999999999999999
Q ss_pred CCCCCC
Q psy2339 101 DPRIPR 106 (125)
Q Consensus 101 ~Pr~~~ 106 (125)
.|.+.+
T Consensus 297 npvlea 302 (984)
T KOG3209|consen 297 NPVLEA 302 (984)
T ss_pred cchhhc
Confidence 998853
No 3
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=99.35 E-value=1.1e-12 Score=69.51 Aligned_cols=30 Identities=37% Similarity=0.898 Sum_probs=28.5
Q ss_pred CCCCCeEEEcCC-CceEEeeCCCCeeeCCCC
Q psy2339 73 LPEGWDMATTAE-GETYFINHTTRTTSWFDP 102 (125)
Q Consensus 73 LP~gWe~~~d~~-G~~yY~nh~t~~T~w~~P 102 (125)
||.||++++|.+ |++||+|+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 799999999876 999999999999999998
No 4
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=99.27 E-value=7.7e-12 Score=66.39 Aligned_cols=32 Identities=41% Similarity=0.961 Sum_probs=30.4
Q ss_pred CCCCCeEEEcCCCceEEeeCCCCeeeCCCCCC
Q psy2339 73 LPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104 (125)
Q Consensus 73 LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~ 104 (125)
||.||++..+.+|+.||+|+.|++++|++|+.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~~ 32 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPRE 32 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCCC
Confidence 68999999999999999999999999999973
No 5
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=99.25 E-value=7.1e-12 Score=66.38 Aligned_cols=30 Identities=37% Similarity=0.898 Sum_probs=28.3
Q ss_pred CCCCcEEEECCC-CCeEEeeCCCCceeccCC
Q psy2339 27 LPEGWDMATTAE-GETYFINHTTRTTSWFDP 56 (125)
Q Consensus 27 LP~gWe~~~~~~-Gr~Yy~n~~T~~TtW~~P 56 (125)
||+||+++++.+ |++||+|+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 799999999875 999999999999999997
No 6
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=99.16 E-value=5.7e-11 Score=62.38 Aligned_cols=31 Identities=42% Similarity=0.961 Sum_probs=29.2
Q ss_pred CCCCeEEEcCCCceEEeeCCCCeeeCCCCCC
Q psy2339 74 PEGWDMATTAEGETYFINHTTRTTSWFDPRI 104 (125)
Q Consensus 74 P~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~ 104 (125)
|.||++.+|.+|+.||+|+.|++++|++|+.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~~ 31 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 6899999999999999999999999999973
No 7
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=99.15 E-value=7.2e-11 Score=62.59 Aligned_cols=31 Identities=42% Similarity=1.021 Sum_probs=29.8
Q ss_pred CCCCcEEEECCCCCeEEeeCCCCceeccCCC
Q psy2339 27 LPEGWDMATTAEGETYFINHTTRTTSWFDPR 57 (125)
Q Consensus 27 LP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~ 57 (125)
||.||++..+.+|+.||+|+.|++++|++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 7899999999999999999999999999996
No 8
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.08 E-value=1.3e-11 Score=99.27 Aligned_cols=72 Identities=25% Similarity=0.518 Sum_probs=58.3
Q ss_pred CCcEEEECCCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 29 EGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 29 ~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
..|++..+++||+||+|..|+.++|++|....... ....--.+|.+..+++|++||+|..|++|.|.-|...
T Consensus 15 s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~-----e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~ 86 (590)
T COG5104 15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGS-----EEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPER 86 (590)
T ss_pred HHHHHhhCCCCceEEEecccccccccChHHHhcch-----HhhhchhhHHHHhhcCCceEEecCccccccccCChhh
Confidence 45999999999999999999999999995432210 0011136799999999999999999999999888653
No 9
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=99.01 E-value=6.3e-10 Score=58.32 Aligned_cols=30 Identities=43% Similarity=1.022 Sum_probs=28.7
Q ss_pred CCCcEEEECCCCCeEEeeCCCCceeccCCC
Q psy2339 28 PEGWDMATTAEGETYFINHTTRTTSWFDPR 57 (125)
Q Consensus 28 P~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~ 57 (125)
|.+|++..+.+|++||+|+.|++++|++|+
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 689999999999999999999999999996
No 10
>KOG3209|consensus
Probab=98.95 E-value=1.3e-09 Score=92.11 Aligned_cols=85 Identities=35% Similarity=0.593 Sum_probs=70.2
Q ss_pred CCCCCCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCCCCC------------------------------CCC-----
Q psy2339 21 PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS------------------------------GSV----- 65 (125)
Q Consensus 21 ~~~~~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~~------------------------------~~~----- 65 (125)
.+....|+++|++...+.+..|+..+++.+++|+.++..... .+.
T Consensus 127 ~d~~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~~~~~~~~E~~e~s~~~s~~m~ssy~aPsts~s~~ 206 (984)
T KOG3209|consen 127 TDQELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENGSGQNYSVEMEESSYPTSSDMPSSYFAPSTSQSTT 206 (984)
T ss_pred ecccccCCCcchhcccccCcceeehhccCCCCcccccccCccccccCCcccchhhhhccCCccCCCcccccccccCCCCC
Confidence 455678999999999999999999999999999988664110 000
Q ss_pred ---------CCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 66 ---------SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 66 ---------~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
.....++||..||..++++|.+||+||+|++|+|-|||+.
T Consensus 207 ~~~~~~~~~~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~ 255 (984)
T KOG3209|consen 207 PMDRYSPATQEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLT 255 (984)
T ss_pred cccccCccccccccCCCCccceEeEeecCeeEeeecccccceecChhhh
Confidence 0134568999999999999999999999999999999985
No 11
>KOG0155|consensus
Probab=98.55 E-value=1.6e-07 Score=77.08 Aligned_cols=76 Identities=26% Similarity=0.586 Sum_probs=58.7
Q ss_pred CCCcEEEECCCCCeEEeeCCCCceeccCCCCCCCCCC---------C---------------C-----------------
Q psy2339 28 PEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGS---------V---------------S----------------- 66 (125)
Q Consensus 28 P~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~---------~---------------~----------------- 66 (125)
|.+|..+..++|..||+|..|...+|++|.....-.+ . .
T Consensus 11 ps~wtef~ap~G~pyy~ns~t~~st~ekP~~l~~~~s~~~~~~~p~~sp~~~~~~~~t~~~~~~e~~~~k~~~s~~~~ee 90 (617)
T KOG0155|consen 11 PSGWTEFKAPDGIPYYWNSETLESTWEKPSFLEKNESSGVTASEPSLSPAIAEAQQKTSSNAFGENPSEKLFVSENAAEE 90 (617)
T ss_pred CCCCccCCCCCCcceecccccccchhhCchhhhhccccCccccCCccCcchhhhhhhhhhccCCcchHHHHHhCcchhhc
Confidence 5899999999999999999999999999966321100 0 0
Q ss_pred --------------CCCCCCCC-CCCeEEEcCCCceEEeeCCCCeeeCCCCC
Q psy2339 67 --------------PGSLGPLP-EGWDMATTAEGETYFINHTTRTTSWFDPR 103 (125)
Q Consensus 67 --------------~~~~~~LP-~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr 103 (125)
+....++| ..|-.+++.++++||||..|+.+.|+.|.
T Consensus 91 ~~~~~~~~kk~p~rPi~~~~ipgtdWcVVwTgD~RvFFyNpktk~S~We~P~ 142 (617)
T KOG0155|consen 91 RKNSRAARKKLPDRPIFKKPIPGTDWCVVWTGDNRVFFYNPKTKLSVWERPL 142 (617)
T ss_pred CCCcccccccCCCCCCCCCCCCCCCeEEEEeCCCceEEeCCccccccccCch
Confidence 00111233 44999999999999999999999999994
No 12
>KOG3259|consensus
Probab=98.39 E-value=1.2e-07 Score=66.47 Aligned_cols=36 Identities=28% Similarity=0.679 Sum_probs=32.0
Q ss_pred CCCCCCCeEEEcC-CCceEEeeCCCCeeeCCCCCCCC
Q psy2339 71 GPLPEGWDMATTA-EGETYFINHTTRTTSWFDPRIPR 106 (125)
Q Consensus 71 ~~LP~gWe~~~d~-~G~~yY~nh~t~~T~w~~Pr~~~ 106 (125)
..||.||+++.+. .|++||+|+.|+++|||.|.-..
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 4599999999984 79999999999999999998643
No 13
>KOG1891|consensus
Probab=98.35 E-value=2.8e-07 Score=68.86 Aligned_cols=35 Identities=46% Similarity=0.923 Sum_probs=32.6
Q ss_pred CCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCC
Q psy2339 70 LGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104 (125)
Q Consensus 70 ~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~ 104 (125)
.-+||+||...++-.|++|||||++++|.|.+|-.
T Consensus 91 dlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 91 DLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred cCCCCCCcceeeEecCceeEeecCCCcccccChhh
Confidence 34899999999999999999999999999999975
No 14
>KOG3259|consensus
Probab=98.35 E-value=2.1e-07 Score=65.31 Aligned_cols=36 Identities=28% Similarity=0.682 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECC-CCCeEEeeCCCCceeccCCCCCC
Q psy2339 25 GPLPEGWDMATTA-EGETYFINHTTRTTSWFDPRIPK 60 (125)
Q Consensus 25 ~pLP~gWe~~~~~-~Gr~Yy~n~~T~~TtW~~P~~~~ 60 (125)
..||++|+.+.+. .||.||+|+.|+.++|+.|....
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 4599999999986 79999999999999999998753
No 15
>KOG0940|consensus
Probab=98.35 E-value=1.2e-06 Score=69.96 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=63.4
Q ss_pred CCCCCCcEEEECCCC---CeEEeeCCCC-ceeccCCCCCCCCCCC--C--CCCCCCCCCCCeEEEcCCCceEEeeCCCCe
Q psy2339 25 GPLPEGWDMATTAEG---ETYFINHTTR-TTSWFDPRIPKPSGSV--S--PGSLGPLPEGWDMATTAEGETYFINHTTRT 96 (125)
Q Consensus 25 ~pLP~gWe~~~~~~G---r~Yy~n~~T~-~TtW~~P~~~~~~~~~--~--~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~ 96 (125)
+.||.+|....+.+| ..||++|.+. .|+|.+|......... . ..-...| .+|+..++..|..||++|..++
T Consensus 59 ~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l-~~~h~~~~~~g~r~F~~~i~~k 137 (358)
T KOG0940|consen 59 GGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLAL-AGWHMRFTDTGQRPFYKHILKK 137 (358)
T ss_pred CCCCcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccc-cceeeEecCCCceehhhhhhcC
Confidence 669999999999998 9999999999 5999999987221100 0 0111123 3899999999999999999999
Q ss_pred eeCCCCCCC
Q psy2339 97 TSWFDPRIP 105 (125)
Q Consensus 97 T~w~~Pr~~ 105 (125)
|+|-+|+..
T Consensus 138 tt~ldd~e~ 146 (358)
T KOG0940|consen 138 TTTLDDREA 146 (358)
T ss_pred ccccCchhh
Confidence 999999886
No 16
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=96.86 E-value=0.00032 Score=57.32 Aligned_cols=28 Identities=29% Similarity=0.754 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCceEEeeCCCCeeeCCCC
Q psy2339 75 EGWDMATTAEGETYFINHTTRTTSWFDP 102 (125)
Q Consensus 75 ~gWe~~~d~~G~~yY~nh~t~~T~w~~P 102 (125)
..|++..+++||+||||..|++++|+.|
T Consensus 15 s~w~e~k~~dgRiYYYN~~T~kS~weKP 42 (590)
T COG5104 15 SEWEELKAPDGRIYYYNKRTGKSSWEKP 42 (590)
T ss_pred HHHHHhhCCCCceEEEecccccccccCh
Confidence 5599999999999999999999999999
No 17
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.0072 Score=53.40 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=67.2
Q ss_pred CCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCCCCCC-C------------CCCCCCCCCCCCCeEEEcCCCceEEee
Q psy2339 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSG-S------------VSPGSLGPLPEGWDMATTAEGETYFIN 91 (125)
Q Consensus 25 ~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~-~------------~~~~~~~~LP~gWe~~~d~~G~~yY~n 91 (125)
...|.+|+..+...++.+++++.+.+++|..++...-.. . ......++|+.+|+.+....-+.|+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~ 465 (872)
T COG5021 386 RNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSGWKTRLNNLYRFYFVE 465 (872)
T ss_pred hcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccchHHHHhhhhheeeehh
Confidence 457999999999999999999999999999997742211 0 011455789999999999999999999
Q ss_pred CCCCeeeCCCCCCC
Q psy2339 92 HTTRTTSWFDPRIP 105 (125)
Q Consensus 92 h~t~~T~w~~Pr~~ 105 (125)
|.+++.+|.+++++
T Consensus 466 h~k~~~~~~~~~~g 479 (872)
T COG5021 466 HRKKTLTKNDSRLG 479 (872)
T ss_pred cccceeeecCCCCc
Confidence 99999999999843
No 18
>KOG3552|consensus
Probab=93.77 E-value=0.017 Score=51.26 Aligned_cols=51 Identities=27% Similarity=0.577 Sum_probs=38.3
Q ss_pred CceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCCCC
Q psy2339 49 RTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPR 106 (125)
Q Consensus 49 ~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~~ 106 (125)
..+.|..+....- ....|+.||++.+|..|+.||+||..+++.+++|..-.
T Consensus 3 ~~a~~~p~~~~~~-------~~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~i~ 53 (1298)
T KOG3552|consen 3 QSAGWLPACEDWS-------KHEELSYGWERAIDSKGRSYYINHLNKTTTYEAPECIR 53 (1298)
T ss_pred ccccCCCCccccc-------cccccchHHHHhhhcccchhHHhhcCCccCcCCCcccc
Confidence 3455655554332 12468999999999999999999999999998876543
No 19
>KOG4286|consensus
Probab=93.50 E-value=0.021 Score=49.64 Aligned_cols=29 Identities=38% Similarity=0.867 Sum_probs=27.2
Q ss_pred CeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 77 WDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 77 We~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
|+..+.++--+|||||.+++|+|++|..-
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~~t 382 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPKMT 382 (966)
T ss_pred chhccCccccchhhcccchhhhccchHHH
Confidence 99999999999999999999999999753
No 20
>KOG0940|consensus
Probab=93.43 E-value=0.11 Score=41.86 Aligned_cols=37 Identities=30% Similarity=0.592 Sum_probs=33.7
Q ss_pred CCCCCCCCCeEEEcCCC---ceEEeeCCCC-eeeCCCCCCC
Q psy2339 69 SLGPLPEGWDMATTAEG---ETYFINHTTR-TTSWFDPRIP 105 (125)
Q Consensus 69 ~~~~LP~gWe~~~d~~G---~~yY~nh~t~-~T~w~~Pr~~ 105 (125)
.-+.||.+|+...+.+| ..||++|++. .|+|++|..+
T Consensus 57 dy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg 97 (358)
T KOG0940|consen 57 DYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSG 97 (358)
T ss_pred ccCCCCcceeeeeccccCCcceeeeeecccccccccCCccC
Confidence 55689999999999999 9999999999 5999999987
No 21
>KOG4334|consensus
Probab=92.57 E-value=0.15 Score=42.69 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=33.8
Q ss_pred CCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCC
Q psy2339 68 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104 (125)
Q Consensus 68 ~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~ 104 (125)
....+||.||...+...|-+.|++..|+..+|..|=+
T Consensus 150 ~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYf 186 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYF 186 (650)
T ss_pred CCCCcCCCceEEEeecCCCceEEeeeeeeEeccCcee
Confidence 4556899999999999999999999999999999966
No 22
>KOG4286|consensus
Probab=91.08 E-value=0.062 Score=46.82 Aligned_cols=29 Identities=38% Similarity=0.848 Sum_probs=26.7
Q ss_pred CcEEEECCCCCeEEeeCCCCceeccCCCC
Q psy2339 30 GWDMATTAEGETYFINHTTRTTSWFDPRI 58 (125)
Q Consensus 30 gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~ 58 (125)
.|+.++.++--.||+||.|.+|+|++|..
T Consensus 353 pw~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 353 PWERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred cchhccCccccchhhcccchhhhccchHH
Confidence 39999999989999999999999999954
No 23
>KOG0155|consensus
Probab=90.95 E-value=0.21 Score=41.97 Aligned_cols=33 Identities=27% Similarity=0.678 Sum_probs=30.5
Q ss_pred CCCCeEEEcCCCceEEeeCCCCeeeCCCCCCCC
Q psy2339 74 PEGWDMATTAEGETYFINHTTRTTSWFDPRIPR 106 (125)
Q Consensus 74 P~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~~ 106 (125)
|.+|.+.-.++|.+||+|..|...+|++|-...
T Consensus 11 ps~wtef~ap~G~pyy~ns~t~~st~ekP~~l~ 43 (617)
T KOG0155|consen 11 PSGWTEFKAPDGIPYYWNSETLESTWEKPSFLE 43 (617)
T ss_pred CCCCccCCCCCCcceecccccccchhhCchhhh
Confidence 499999999999999999999999999998754
No 24
>KOG4334|consensus
Probab=89.84 E-value=0.38 Score=40.32 Aligned_cols=36 Identities=28% Similarity=0.584 Sum_probs=32.1
Q ss_pred CCCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCC
Q psy2339 24 LGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59 (125)
Q Consensus 24 ~~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~ 59 (125)
..+||.||....-..|-.-|++..||..+|.+|-..
T Consensus 152 ~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 152 SEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred CCcCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 467999999998889999999999999999999553
No 25
>KOG3552|consensus
Probab=89.53 E-value=0.092 Score=46.86 Aligned_cols=47 Identities=28% Similarity=0.512 Sum_probs=36.5
Q ss_pred ceeeCCCCCCCCCCCCCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCC
Q psy2339 10 RVVPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~ 59 (125)
+.+|.+.+-..-+. |+++|++..+..||.||+||..++++.+.|...
T Consensus 6 ~~~p~~~~~~~~~~---v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~i 52 (1298)
T KOG3552|consen 6 GWLPACEDWSKHEE---LSYGWERAIDSKGRSYYINHLNKTTTYEAPECI 52 (1298)
T ss_pred cCCCCccccccccc---cchHHHHhhhcccchhHHhhcCCccCcCCCccc
Confidence 34555555544344 899999999999999999999999998877553
No 26
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.81 E-value=0.093 Score=46.61 Aligned_cols=84 Identities=24% Similarity=0.367 Sum_probs=65.2
Q ss_pred CCCCCCCCCcEEEECCCCCeEEeeCCCCceeccCCCCCCC--------------CCC--------CC-------------
Q psy2339 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKP--------------SGS--------VS------------- 66 (125)
Q Consensus 22 ~~~~pLP~gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~--------------~~~--------~~------------- 66 (125)
+..+.++++|+...+.-|+.||+.|.+..++|..|..... ... ..
T Consensus 294 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~ 373 (872)
T COG5021 294 DSLLRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEETLGESTSFLVVNNDDSSSIKDLPHQVGSNPFLEAHPEFSEL 373 (872)
T ss_pred hhcccccccccchhhhcchhhhhhhhhhhhhhhhccchhhhhhhhhhccccccchhhhhhcccccCCcccccccHHHHHH
Confidence 4456688999999999999999999999999999833210 000 00
Q ss_pred --------CCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 67 --------PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 67 --------~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
.-....+|.||+..+...++.+++++.+..+.|++++-+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (872)
T COG5021 374 LKNQSRGTTRDFRNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRRE 420 (872)
T ss_pred HhhhcccccchhhcCCccchhhhhhhHHHHHhhhhcchhhhhchhhh
Confidence 011235789999999999999999999999999999874
No 27
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=81.88 E-value=2 Score=26.91 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=17.5
Q ss_pred CCCCCCcEEEEC--------CCCCeEEeeCCCC
Q psy2339 25 GPLPEGWDMATT--------AEGETYFINHTTR 49 (125)
Q Consensus 25 ~pLP~gWe~~~~--------~~Gr~Yy~n~~T~ 49 (125)
.|||.||+..+. ..+.+||+...-+
T Consensus 6 ~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~Gk 38 (77)
T smart00391 6 LPLPCGWRRETKQRKSGRSAGKFDVYYISPCGK 38 (77)
T ss_pred CCCCCCcEEEEEEecCCCCCCcccEEEECCCCC
Confidence 579999977653 2467899876443
No 28
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=79.28 E-value=2.8 Score=26.26 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=21.5
Q ss_pred CCCCCCeEEEc--------CCCceEEeeCCCCeeeCCCCCC
Q psy2339 72 PLPEGWDMATT--------AEGETYFINHTTRTTSWFDPRI 104 (125)
Q Consensus 72 ~LP~gWe~~~d--------~~G~~yY~nh~t~~T~w~~Pr~ 104 (125)
+||.||+..+- ..+.+||+...-+ .--..+.+
T Consensus 7 Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~Gk-klRs~~ev 46 (77)
T smart00391 7 PLPCGWRRETKQRKSGRSAGKFDVYYISPCGK-KLRSKSEL 46 (77)
T ss_pred CCCCCcEEEEEEecCCCCCCcccEEEECCCCC-eeeCHHHH
Confidence 49999987764 3578999987554 33344444
No 29
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=79.00 E-value=3.8 Score=25.71 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=18.2
Q ss_pred CCCCCCCeEEEc-------CCCceEEeeCCCCe
Q psy2339 71 GPLPEGWDMATT-------AEGETYFINHTTRT 96 (125)
Q Consensus 71 ~~LP~gWe~~~d-------~~G~~yY~nh~t~~ 96 (125)
..||.||+..+- ..+.+||+....++
T Consensus 5 ~~lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk 37 (77)
T cd01396 5 PRLPPGWKRELVPRKSGSAGKFDVYYISPTGKK 37 (77)
T ss_pred CCCCCCCEEEEEEecCCCCCcceEEEECCCCCE
Confidence 359999977662 23469999887643
No 30
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=78.51 E-value=3.7 Score=24.43 Aligned_cols=25 Identities=28% Similarity=0.816 Sum_probs=17.2
Q ss_pred CCCCCCcEEEEC-------CCCCeEEeeCCCC
Q psy2339 25 GPLPEGWDMATT-------AEGETYFINHTTR 49 (125)
Q Consensus 25 ~pLP~gWe~~~~-------~~Gr~Yy~n~~T~ 49 (125)
.|||.||+.... ..+.+||+....+
T Consensus 4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk 35 (62)
T cd00122 4 DPLPPGWKRELVIRKSGSAGKGDVYYYSPCGK 35 (62)
T ss_pred CCCCCCeEEEEEEcCCCCCCcceEEEECCCCc
Confidence 578999977653 2356899876643
No 31
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=69.58 E-value=7 Score=24.26 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=21.2
Q ss_pred CCCCCCCeEEEc--C------CCceEEeeCCCCeeeCCCCCC
Q psy2339 71 GPLPEGWDMATT--A------EGETYFINHTTRTTSWFDPRI 104 (125)
Q Consensus 71 ~~LP~gWe~~~d--~------~G~~yY~nh~t~~T~w~~Pr~ 104 (125)
.+||.||...+- . ...+||+.. +++.-.....+
T Consensus 9 ~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP-~Gk~~RS~~eV 49 (77)
T PF01429_consen 9 PPLPDGWKREVVVRKSGSSAGKKDVYYYSP-CGKRFRSKKEV 49 (77)
T ss_dssp TTSTTT-EEEEEESSSSTTTTSEEEEEEET-TSEEESSHHHH
T ss_pred CCCCCCCEEEEEEecCCCcCCceEEEEECC-CCCEEeCHHHH
Confidence 579999987764 2 346889988 66665544433
No 32
>KOG0150|consensus
Probab=67.05 E-value=4 Score=32.36 Aligned_cols=30 Identities=33% Similarity=0.709 Sum_probs=26.9
Q ss_pred CCeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 76 GWDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 76 gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
-|.+...+.|..||.|..|+.+-|..|++.
T Consensus 152 ~wv~~Knes~~~yy~n~~t~esvwk~P~~~ 181 (336)
T KOG0150|consen 152 EWVEGKNESGPTYYSNKRTNESVWKPPRIS 181 (336)
T ss_pred hcccccCCCCCCcceecCCCccccCCCCcc
Confidence 377778899999999999999999999975
No 33
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=65.37 E-value=8.9 Score=23.93 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=16.8
Q ss_pred CCCCCCcEEEEC-------CCCCeEEeeCCCC
Q psy2339 25 GPLPEGWDMATT-------AEGETYFINHTTR 49 (125)
Q Consensus 25 ~pLP~gWe~~~~-------~~Gr~Yy~n~~T~ 49 (125)
.||+.||+..+- ..|.+||+...-+
T Consensus 4 ~Pl~~GW~Re~vir~~~~~~~~dV~Y~aPcGK 35 (73)
T cd01397 4 VPLELGWRRETRIRGLGGRIQGEVAYYAPCGK 35 (73)
T ss_pred CCCCCCceeEEEeccCCCCccceEEEECCCCc
Confidence 589999976541 2467889854433
No 34
>KOG0150|consensus
Probab=58.35 E-value=7 Score=31.00 Aligned_cols=32 Identities=31% Similarity=0.632 Sum_probs=27.5
Q ss_pred CcEEEECCCCCeEEeeCCCCceeccCCCCCCC
Q psy2339 30 GWDMATTAEGETYFINHTTRTTSWFDPRIPKP 61 (125)
Q Consensus 30 gWe~~~~~~Gr~Yy~n~~T~~TtW~~P~~~~~ 61 (125)
-|.....++|-.||.|..|+.+.|..|+....
T Consensus 152 ~wv~~Knes~~~yy~n~~t~esvwk~P~~~~t 183 (336)
T KOG0150|consen 152 EWVEGKNESGPTYYSNKRTNESVWKPPRISFT 183 (336)
T ss_pred hcccccCCCCCCcceecCCCccccCCCCcccc
Confidence 47777788899999999999999999987643
No 35
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=47.85 E-value=57 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCceEEeeCCCCeeeCCCCC
Q psy2339 75 EGWDMATTAEGETYFINHTTRTTSWFDPR 103 (125)
Q Consensus 75 ~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr 103 (125)
.|--...+.+|..|.+|..+++..|....
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 34444557889999999999999886543
No 36
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.75 E-value=73 Score=24.83 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=42.3
Q ss_pred CCCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 36 TAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 36 ~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
+.+|.+|-++..|++..|....... ....+-.+---..+.+|..|-+|..+++..|+...+.
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~~~~--------~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~ 309 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDASSY--------QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK 309 (377)
T ss_pred EcCCEEEEEECCCCcEEEeeccCCc--------cCceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc
Confidence 4467888889999999998762211 0011223444445678999999999999999876553
No 37
>KOG3427|consensus
Probab=41.25 E-value=8.2 Score=28.83 Aligned_cols=37 Identities=32% Similarity=0.544 Sum_probs=31.1
Q ss_pred CCCCCCCcEEEECCC-CCeEEeeCCCCceeccCCCCCC
Q psy2339 24 LGPLPEGWDMATTAE-GETYFINHTTRTTSWFDPRIPK 60 (125)
Q Consensus 24 ~~pLP~gWe~~~~~~-Gr~Yy~n~~T~~TtW~~P~~~~ 60 (125)
+.-||..|.+.++.. |.-||.|..|-.-.|..|+...
T Consensus 5 L~rlp~~w~kv~~~s~~~~y~wn~~td~v~w~sp~~P~ 42 (222)
T KOG3427|consen 5 LQRLPKLWTKVFDASPGSEYIWNIITDNVDWDSPSGPY 42 (222)
T ss_pred hhcCCchhHhhcccccchhhhhhcccccccccCCCCCc
Confidence 456889999888875 8999999999999999887653
No 38
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=41.09 E-value=61 Score=25.64 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=42.4
Q ss_pred CCCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCC
Q psy2339 36 TAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103 (125)
Q Consensus 36 ~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr 103 (125)
+.+|.+|-+|..|++..|......... ..+-+-.+--...+.+|..|=+|..|++..|..+.
T Consensus 127 ~~~g~l~ald~~tG~~~W~~~~~~~~~------ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 127 SEKGQVYALNAEDGEVAWQTKVAGEAL------SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred cCCCEEEEEECCCCCCcccccCCCcee------cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 456889999999999999886543211 00112233333446788899999999999997764
No 39
>KOG3427|consensus
Probab=39.68 E-value=9.4 Score=28.53 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=30.4
Q ss_pred CCCCCCCeEEEcC-CCceEEeeCCCCeeeCCCCCCCC
Q psy2339 71 GPLPEGWDMATTA-EGETYFINHTTRTTSWFDPRIPR 106 (125)
Q Consensus 71 ~~LP~gWe~~~d~-~G~~yY~nh~t~~T~w~~Pr~~~ 106 (125)
.-||..|.+++++ =|..||.|..|-...|.+|+-+.
T Consensus 6 ~rlp~~w~kv~~~s~~~~y~wn~~td~v~w~sp~~P~ 42 (222)
T KOG3427|consen 6 QRLPKLWTKVFDASPGSEYIWNIITDNVDWDSPSGPY 42 (222)
T ss_pred hcCCchhHhhcccccchhhhhhcccccccccCCCCCc
Confidence 4578899999997 47888999999999999988754
No 40
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=39.23 E-value=64 Score=25.18 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCCCCC
Q psy2339 36 TAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103 (125)
Q Consensus 36 ~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr 103 (125)
+.+|.+|-+|..|++..|......... ..+-+-.+.-...+.+|..|-+|..+++..|+...
T Consensus 112 ~~~g~l~ald~~tG~~~W~~~~~~~~~------~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 112 TEKGEVIALDAEDGKELWRAKLSSEVL------SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCCEEEEEECCCCcEeeeeccCceee------cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 446777777777777777654322110 00111234444446788899999999999997654
No 41
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=39.13 E-value=35 Score=16.64 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.5
Q ss_pred ECCCCCeEEeeCCCCceeccC
Q psy2339 35 TTAEGETYFINHTTRTTSWFD 55 (125)
Q Consensus 35 ~~~~Gr~Yy~n~~T~~TtW~~ 55 (125)
.+.+|.+|-+|..+++..|..
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEc
Confidence 356799999999999999974
No 42
>KOG1450|consensus
Probab=30.87 E-value=1.2e+02 Score=26.61 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=50.1
Q ss_pred CCcEEEECC-CCCeEEeeCCCCceeccC-C---CCCCCCCCCC-----CCCCCCCCCCCeEEEc-CCCceEEeeCCCCee
Q psy2339 29 EGWDMATTA-EGETYFINHTTRTTSWFD-P---RIPKPSGSVS-----PGSLGPLPEGWDMATT-AEGETYFINHTTRTT 97 (125)
Q Consensus 29 ~gWe~~~~~-~Gr~Yy~n~~T~~TtW~~-P---~~~~~~~~~~-----~~~~~~LP~gWe~~~d-~~G~~yY~nh~t~~T 97 (125)
.-|+..... .|+.+|++..++.++|+. + ......++.. ....-.+..-|..... ..+...|.|.....|
T Consensus 271 ~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~net 350 (650)
T KOG1450|consen 271 TVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNET 350 (650)
T ss_pred cccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCCc
Confidence 359888766 688899999999999985 2 1111111111 0111245666776654 577888999999999
Q ss_pred eCCCCCC
Q psy2339 98 SWFDPRI 104 (125)
Q Consensus 98 ~w~~Pr~ 104 (125)
.|++.-.
T Consensus 351 ~~~d~~~ 357 (650)
T KOG1450|consen 351 SFEDWSS 357 (650)
T ss_pred cccchhh
Confidence 9977644
No 43
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=28.03 E-value=25 Score=29.05 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=15.2
Q ss_pred CCCceEEeeCCCCeeeCCCCC
Q psy2339 83 AEGETYFINHTTRTTSWFDPR 103 (125)
Q Consensus 83 ~~G~~yY~nh~t~~T~w~~Pr 103 (125)
...+.|++|...++|+|+-|.
T Consensus 381 ~~eKLYHyN~~GGtSTW~LP~ 401 (425)
T PF12905_consen 381 DEEKLYHYNPDGGTSTWTLPD 401 (425)
T ss_dssp GG-EEEEEESS-CEEEEE--H
T ss_pred CcceeEEEcCCCCeeeeeCCc
Confidence 456999999999999999885
No 44
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=26.78 E-value=1.8e+02 Score=20.50 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=35.0
Q ss_pred CCCCeEEeeCCCCceeccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCceEEeeCCCCeeeCC
Q psy2339 37 AEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWF 100 (125)
Q Consensus 37 ~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~~~~~~~~~LP~gWe~~~d~~G~~yY~nh~t~~T~w~ 100 (125)
.+|+++-++..++...|..+ ..... ....+..+--...+.+|+.|-+|..|++..|.
T Consensus 181 ~~g~~~~~d~~tg~~~w~~~-~~~~~------~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 181 GDGRVVAVDLATGEKLWSKP-ISGIY------SLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTSSEEEEETTTTEEEEEEC-SS-EC------ECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCCCEEEEec-CCCcc------CCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 35666666778887778766 32110 00112233333345689999999999999984
No 45
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.64 E-value=82 Score=23.71 Aligned_cols=33 Identities=12% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCCCCCeEEEcCCCceEEeeCCCCeeeCCCCCCC
Q psy2339 72 PLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105 (125)
Q Consensus 72 ~LP~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr~~ 105 (125)
.+|--|..++ ..||+||-+--.....|.+|+..
T Consensus 172 ~mPVvWtR~~-GkGRvFYssLGHta~~~~~pe~~ 204 (239)
T COG3828 172 VMPVVWTRRY-GKGRVFYSSLGHTASEFAVPEMR 204 (239)
T ss_pred eeeeEEEeee-cCceEEEeccCCCccccccHHHH
Confidence 3566677666 67999999887778889999874
No 46
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.08 E-value=90 Score=19.16 Aligned_cols=22 Identities=9% Similarity=0.404 Sum_probs=17.0
Q ss_pred CCeEE-EcCCCceE--EeeCCCCee
Q psy2339 76 GWDMA-TTAEGETY--FINHTTRTT 97 (125)
Q Consensus 76 gWe~~-~d~~G~~y--Y~nh~t~~T 97 (125)
.||.. .+.+|+.+ |+|..|++-
T Consensus 55 ~yev~~~~~dG~~~ev~vD~~tG~V 79 (83)
T PF13670_consen 55 CYEVEARDKDGKKVEVYVDPATGEV 79 (83)
T ss_pred EEEEEEEECCCCEEEEEEcCCCCeE
Confidence 48877 78899887 788887754
No 47
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=22.35 E-value=2.9e+02 Score=20.06 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=17.4
Q ss_pred EEEECCCCCeEEeeCCCCceeccCCCC
Q psy2339 32 DMATTAEGETYFINHTTRTTSWFDPRI 58 (125)
Q Consensus 32 e~~~~~~Gr~Yy~n~~T~~TtW~~P~~ 58 (125)
-...-++|++-|+-+.+++++-..|..
T Consensus 39 vK~~~pDg~v~Y~ya~~~T~~tt~pdG 65 (179)
T PF07202_consen 39 VKQTLPDGRVIYYYADAQTTHTTYPDG 65 (179)
T ss_pred EeEEecCCcEEEEEeCCCEEEEEcCCC
Confidence 344457788766666777666666654
No 48
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=21.62 E-value=57 Score=27.04 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCCeEEeeCCCCceeccCCCC
Q psy2339 38 EGETYFINHTTRTTSWFDPRI 58 (125)
Q Consensus 38 ~Gr~Yy~n~~T~~TtW~~P~~ 58 (125)
..++|++|...++|||+-|..
T Consensus 382 ~eKLYHyN~~GGtSTW~LP~~ 402 (425)
T PF12905_consen 382 EEKLYHYNPDGGTSTWTLPDS 402 (425)
T ss_dssp G-EEEEEESS-CEEEEE--HH
T ss_pred cceeEEEcCCCCeeeeeCCcc
Confidence 468999999999999997644
No 49
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.39 E-value=3.5e+02 Score=22.32 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=40.4
Q ss_pred CCCCCeEEeeCCCCceeccCCCCCCCCCC-CCCCCCC-CCCC-CCeEEEcCCCceEEeeCCCCeeeCCCC
Q psy2339 36 TAEGETYFINHTTRTTSWFDPRIPKPSGS-VSPGSLG-PLPE-GWDMATTAEGETYFINHTTRTTSWFDP 102 (125)
Q Consensus 36 ~~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~-~~~~~~~-~LP~-gWe~~~d~~G~~yY~nh~t~~T~w~~P 102 (125)
+.+|++|-++..|++..|........... ......+ .+-. +--..-+.+|.+|-+|..|++..|...
T Consensus 68 ~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 68 TSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 44688888999999999987543321000 0000000 0111 333333578899999999999999643
No 50
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.29 E-value=2.9e+02 Score=22.83 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=41.8
Q ss_pred CCCCeEEeeCCCCceeccCCCCCCCCCC---CCCCCCCCCC-CCCeEEEcCCCceEEeeCCCCeeeCCCCC
Q psy2339 37 AEGETYFINHTTRTTSWFDPRIPKPSGS---VSPGSLGPLP-EGWDMATTAEGETYFINHTTRTTSWFDPR 103 (125)
Q Consensus 37 ~~Gr~Yy~n~~T~~TtW~~P~~~~~~~~---~~~~~~~~LP-~gWe~~~d~~G~~yY~nh~t~~T~w~~Pr 103 (125)
.+|+++-+|..|++.-|..+.......- ........+- .+--..-+.+|..|-+|..|++..|....
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 3588899999999999988754111000 0000001111 23333347899999999999999998653
Done!