RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2339
(125 letters)
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 109 bits (273), Expect = 1e-32
Identities = 36/87 (41%), Positives = 56/87 (64%)
Query: 21 PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMA 80
GS LPEG++ TT +G+ YF++ T ++W DPR+P+ +++ LGPLP GW++
Sbjct: 4 GGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIR 63
Query: 81 TTAEGETYFINHTTRTTSWFDPRIPRS 107
TA G YF++H RTT + DPR+ +
Sbjct: 64 NTATGRVYFVDHNNRTTQFTDPRLSAN 90
Score = 57.9 bits (140), Expect = 2e-12
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 67 PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGINPWKN 116
GS LPEG++ TT +G+ YF++ T ++W DPR+PR IN +
Sbjct: 4 GGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEEL 53
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 101 bits (252), Expect = 2e-29
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 18 SVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGW 77
+LGPLP+GW+ ++ YF+NH RTT W DPR S+ GPLP GW
Sbjct: 4 EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLIN--EGPLPPGW 61
Query: 78 DMATTAEGETYFINHTTRTTSWFDPR 103
++ TA GE +F++H TR T++ DPR
Sbjct: 62 EIRYTAAGERFFVDHNTRRTTFEDPR 87
Score = 56.4 bits (136), Expect = 6e-12
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 64 SVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHH 109
+LGPLP+GW+ ++ YF+NH RTT W DPR
Sbjct: 4 EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEV 49
Score = 54.5 bits (131), Expect = 3e-11
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 13 PKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 57
VS + GPLP GW++ TA GE +F++H TR T++ DPR
Sbjct: 43 RTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 77.2 bits (190), Expect = 3e-20
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYF 89
W A A G Y+ N T+ ++W P+ L GW A TA+G+ Y+
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELIS-----QEELLLRENGWKAAKTADGKVYY 57
Query: 90 INHTTRTTSWFDPRIPR 106
N TTR TSW P +
Sbjct: 58 YNPTTRETSWTIPAFEK 74
Score = 51.0 bits (122), Expect = 6e-10
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 14 KPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPK 60
KP +S L GW A TA+G+ Y+ N TTR TSW P K
Sbjct: 28 KPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEK 74
Score = 40.6 bits (95), Expect = 5e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 76 GWDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGINP 113
W A A G Y+ N T+ ++W P+ S +
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLL 40
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 69.3 bits (169), Expect = 7e-17
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 18 SVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGW 77
V+ G+ W + +G TY+ N T+ ++W KP +P W
Sbjct: 3 DVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTW-----EKPDDLKTPAEQLLSKCPW 57
Query: 78 DMATTAEGETYFINHTTRTTSWFDPR 103
+ G+TY+ N T+ + W P+
Sbjct: 58 KEYKSDSGKTYYYNSQTKESRWAKPK 83
Score = 43.9 bits (103), Expect = 5e-07
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 64 SVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHH 109
V+ G+ W + +G TY+ N T+ ++W P ++
Sbjct: 3 DVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPA 48
Score = 39.6 bits (92), Expect = 2e-05
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 14 KPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 57
KP +P W + G+TY+ N T+ + W P+
Sbjct: 40 KPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPK 83
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY
motif, liddle syndrome, proline-rich, ligase; NMR
{Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A
2joc_A*
Length = 50
Score = 67.3 bits (165), Expect = 1e-16
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 18 SVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
V LGPLP GW+ T +G +FINH + T W DPR+ +
Sbjct: 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVA 47
Score = 66.5 bits (163), Expect = 3e-16
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 64 SVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSH 108
V LGPLP GW+ T +G +FINH + T W DPR+
Sbjct: 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVA 47
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 66.9 bits (164), Expect = 1e-16
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 17 GSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
G + G PLP W M G T+FI+H +R T+W DPR + S
Sbjct: 1 GPLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRAS 46
Score = 64.6 bits (158), Expect = 1e-15
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 63 GSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
G + G PLP W M G T+FI+H +R T+W DPR R+
Sbjct: 1 GPLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRA 45
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 66.9 bits (164), Expect = 2e-16
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 67 PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
P GPLP GW++ TA G YF++H RTT + DPR+ +
Sbjct: 2 PLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSAN 42
Score = 66.1 bits (162), Expect = 3e-16
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 21 PGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59
P GPLP GW++ TA G YF++H RTT + DPR+
Sbjct: 2 PLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 66.9 bits (164), Expect = 2e-16
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 20 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
S G LP+GW++ G +FI+H T+TT+W DPR+ P+
Sbjct: 6 SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPA 48
Score = 65.4 bits (160), Expect = 7e-16
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 66 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHH 109
S G LP+GW++ G +FI+H T+TT+W DPR+ H
Sbjct: 6 SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAH 49
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 68.5 bits (167), Expect = 2e-16
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 23 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSG 63
+ LP GW++ T +G+++F++H +R T++ DPRIP +G
Sbjct: 69 TRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQNG 109
Score = 64.3 bits (156), Expect = 8e-15
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 45 NHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
+ R ++ + LP GW++ T +G+++F++H +R T++ DPRI
Sbjct: 45 RDARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104
Query: 105 P 105
P
Sbjct: 105 P 105
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex;
NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB:
2op7_A
Length = 53
Score = 66.2 bits (162), Expect = 3e-16
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 15 PSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKP 61
VS + GPLP GW++ TA GE +F++H TR T++ DPR P
Sbjct: 7 EFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53
Score = 65.5 bits (160), Expect = 8e-16
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 56 PRIPKPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103
P VS + GPLP GW++ TA GE +F++H TR T++ DPR
Sbjct: 2 PLGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka,
transcription; NMR {Oryzias latipes}
Length = 46
Score = 66.1 bits (162), Expect = 3e-16
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 23 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPK 60
+ GPLPEGW+ A T EGE Y+INH +TTSW DPR+
Sbjct: 8 ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLET 45
Score = 65.4 bits (160), Expect = 5e-16
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 69 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105
+ GPLPEGW+ A T EGE Y+INH +TTSW DPR+
Sbjct: 8 ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLE 44
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 66.0 bits (162), Expect = 3e-16
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
++GPLP GW+ G Y+++H TRTT+W P +
Sbjct: 2 RAMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
Score = 66.0 bits (162), Expect = 3e-16
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 68 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
++GPLP GW+ G Y+++H TRTT+W P +
Sbjct: 2 RAMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 57
Score = 66.3 bits (162), Expect = 3e-16
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 16 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
S + +LGPLPE W+MA T GE YFI+H T+TTSW DPR
Sbjct: 4 GSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQ 50
Score = 65.1 bits (159), Expect = 1e-15
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 62 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPR 106
S + +LGPLPE W+MA T GE YFI+H T+TTSW DPR
Sbjct: 4 GSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLN 48
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 65.7 bits (161), Expect = 4e-16
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 20 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
SPG LP GW+M G +FI+H T+TT+W DPR+
Sbjct: 2 SPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
Score = 65.7 bits (161), Expect = 4e-16
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 66 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
SPG LP GW+M G +FI+H T+TT+W DPR+
Sbjct: 2 SPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 64.5 bits (158), Expect = 1e-15
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
GPLP+GW+ A T +GE Y+INH +TTSW DPR+
Sbjct: 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
Score = 64.5 bits (158), Expect = 1e-15
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
GPLP+GW+ A T +GE Y+INH +TTSW DPR+
Sbjct: 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 65.0 bits (159), Expect = 1e-15
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 23 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
PLP GW+MA T+ G+ YF NH +TT+W DPR S
Sbjct: 5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44
Score = 63.8 bits (156), Expect = 2e-15
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 69 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHH 109
PLP GW+MA T+ G+ YF NH +TT+W DPR
Sbjct: 5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 63.5 bits (155), Expect = 4e-15
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 16 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
S S G PLP GW + T G Y+I+H T TT W P PS
Sbjct: 1 GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGPS 47
Score = 60.8 bits (148), Expect = 4e-14
Identities = 19/49 (38%), Positives = 22/49 (44%)
Query: 62 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHHG 110
S S G PLP GW + T G Y+I+H T TT W P G
Sbjct: 1 GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGPSSG 49
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 62.2 bits (152), Expect = 1e-14
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 20 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59
S G PLP GW+ T EG+ Y+ N T TT+W P I
Sbjct: 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41
Score = 62.2 bits (152), Expect = 1e-14
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 66 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105
S G PLP GW+ T EG+ Y+ N T TT+W P I
Sbjct: 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 61.8 bits (151), Expect = 2e-14
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 57
LPEGW+M T +G YF++H RTT++ DPR
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
Score = 61.8 bits (151), Expect = 2e-14
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 68 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103
LPEGW+M T +G YF++H RTT++ DPR
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 61.5 bits (150), Expect = 2e-14
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
LP GW+ A TA+G YFINH T+TTSW P +
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
Score = 61.5 bits (150), Expect = 2e-14
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 68 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
LP GW+ A TA+G YFINH T+TTSW P +
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR
{} SCOP: k.22.1.1
Length = 37
Score = 61.0 bits (149), Expect = 2e-14
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59
LP GWD T G+TY+ NH T+T++W DPR+
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36
Score = 61.0 bits (149), Expect = 2e-14
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105
LP GWD T G+TY+ NH T+T++W DPR+
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 60.6 bits (148), Expect = 4e-14
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
PLP GW+ G TY++NH R+T W P +
Sbjct: 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
Score = 60.6 bits (148), Expect = 4e-14
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
PLP GW+ G TY++NH R+T W P +
Sbjct: 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 60.3 bits (147), Expect = 6e-14
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 68 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
LP GW+ G Y+++H + T+W P P S
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSS 42
Score = 59.5 bits (145), Expect = 1e-13
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSG 63
LP GW+ G Y+++H + T+W P P SG
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP-SSG 43
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
PDB: 2lb2_A*
Length = 36
Score = 59.5 bits (145), Expect = 1e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
LP GW+ A+G TY++NH RTT+W P +
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
Score = 59.5 bits (145), Expect = 1e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
LP GW+ A+G TY++NH RTT+W P +
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis;
NMR {Homo sapiens}
Length = 54
Score = 59.4 bits (144), Expect = 2e-13
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
G LP GW+ T G+ +F++H + T++ DPR+
Sbjct: 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTV 47
Score = 58.7 bits (142), Expect = 4e-13
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105
G LP GW+ T G+ +F++H + T++ DPR+
Sbjct: 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLA 44
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 59.3 bits (143), Expect = 3e-13
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 26 PLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPLPEGWDMATTAEG 85
P W T+EG Y+ + + + W KP G + W + +G
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQW-----EKPEGFQGDLKKTAVKTVWVEGLSEDG 56
Query: 86 ETYFINHTTRTTSWFDP 102
TY+ N T + W P
Sbjct: 57 FTYYYNTETGESRWEKP 73
Score = 36.2 bits (83), Expect = 3e-04
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 72 PLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGINPWKNKKIKFI 122
P W T+EG Y+ + + + W P + K ++ +
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGL 52
Score = 35.4 bits (81), Expect = 5e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 14 KPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDP 56
KP G + W + +G TY+ N T + W P
Sbjct: 31 KPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 56.6 bits (137), Expect = 2e-12
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 62 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
SGS S LP GW+ Y+++H R T + +P P S
Sbjct: 3 SGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGPSS 48
Score = 55.5 bits (134), Expect = 6e-12
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 16 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59
SGS S LP GW+ Y+++H R T + +P P
Sbjct: 3 SGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 51.9 bits (125), Expect = 1e-10
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 22 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 57
LP GW + +G Y++N TT T+W P
Sbjct: 3 SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
Score = 51.9 bits (125), Expect = 1e-10
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 68 GSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103
LP GW + +G Y++N TT T+W P
Sbjct: 3 SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
>2yse_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI-1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 51.8 bits (124), Expect = 2e-10
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 16 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59
SGS S LP GW+ Y+++H R T + +P +
Sbjct: 3 SGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46
Score = 51.8 bits (124), Expect = 2e-10
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 62 SGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105
SGS S LP GW+ Y+++H R T + +P +
Sbjct: 3 SGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 50.0 bits (120), Expect = 2e-08
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 66 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGINPW-----KNKKIK 120
+ LGPLP GW+M T YF++H T+TT+W DPR+P S P + K I
Sbjct: 2 NASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRKVIY 61
Query: 121 F 121
F
Sbjct: 62 F 62
Score = 48.8 bits (117), Expect = 5e-08
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 20 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSP 67
+ LGPLP GW+M T YF++H T+TT+W DPR+P P
Sbjct: 2 NASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVP 49
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 49.7 bits (118), Expect = 2e-08
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRSHHGINPW 114
+ W+ A + Y+INH T+TT W P++ + +
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADL 53
Score = 48.5 bits (115), Expect = 6e-08
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
+ W+ A + Y+INH T+TT W P++
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKM 43
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 45.2 bits (107), Expect = 6e-08
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 61 PSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
SGS P LP GW+ ++E TY+++HT + + P P S
Sbjct: 2 SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSS 48
Score = 44.5 bits (105), Expect = 1e-07
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 15 PSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 59
SGS P LP GW+ ++E TY+++HT + + P P
Sbjct: 2 SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 30.6 bits (69), Expect = 0.015
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 23 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDP 56
E W T +G+ Y+ N TR ++W P
Sbjct: 4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
Score = 30.6 bits (69), Expect = 0.015
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 69 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDP 102
E W T +G+ Y+ N TR ++W P
Sbjct: 4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 29.1 bits (65), Expect = 0.059
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 20 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDP 56
S+G W + +G TY+ N T+ ++W P
Sbjct: 3 RRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
Score = 29.1 bits (65), Expect = 0.059
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 66 SPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDP 102
S+G W + +G TY+ N T+ ++W P
Sbjct: 3 RRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 30.2 bits (68), Expect = 0.098
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 26 PLPEGWDMATT-AEGETYFINHTTRTTSWFDP 56
LP GW+ A + + G Y+ NH T + W P
Sbjct: 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 30.2 bits (68), Expect = 0.098
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 72 PLPEGWDMATT-AEGETYFINHTTRTTSWFDP 102
LP GW+ A + + G Y+ NH T + W P
Sbjct: 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain
group IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 28.3 bits (63), Expect = 0.17
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 27 LPEGWDMATT-AEGETYFINHTTRTTSWFDP 56
LP GW++ + ++ Y+ N TR + W P
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
Score = 28.3 bits (63), Expect = 0.17
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 73 LPEGWDMATT-AEGETYFINHTTRTTSWFDP 102
LP GW++ + ++ Y+ N TR + W P
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D
domain swapping, heme binding, MI processing, heme,
iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Length = 79
Score = 27.4 bits (60), Expect = 0.46
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 26 PLPEGWDMATTAEGETYFINHTTRTTSWFDP 56
PLP+GW M G +++ +R +W P
Sbjct: 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRP 58
Score = 27.4 bits (60), Expect = 0.46
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 72 PLPEGWDMATTAEGETYFINHTTRTTSWFDP 102
PLP+GW M G +++ +R +W P
Sbjct: 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRP 58
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 26.6 bits (59), Expect = 0.47
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDP 56
W TA+G+TY+ N+ T ++W P
Sbjct: 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 33
Score = 26.6 bits (59), Expect = 0.47
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDP 102
W TA+G+TY+ N+ T ++W P
Sbjct: 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 33
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET:
GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A*
3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A
1a2v_A*
Length = 692
Score = 28.3 bits (62), Expect = 0.71
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 14 KPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPL 73
+ +G ++ LG E T NH + DPRI S +
Sbjct: 424 RLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSS 483
Query: 74 PEGWDMATTAEGETYFINHTTRTTSW-----FDPRIPRSHHGINPWKNKKI 119
P G ++ TT T ++ RS NP K
Sbjct: 484 PYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPY 534
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.3 bits (57), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 14 KPSGSVSPGSLGPLP-EGWDMATTAEGETYFINHTTRTTSWFDP 56
SG P + P+P W + T + +F N TTR + W P
Sbjct: 4 GSSGKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRP 47
Score = 26.3 bits (57), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 60 KPSGSVSPGSLGPLP-EGWDMATTAEGETYFINHTTRTTSWFDP 102
SG P + P+P W + T + +F N TTR + W P
Sbjct: 4 GSSGKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRP 47
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo
sapiens} SCOP: b.72.1.1
Length = 55
Score = 25.5 bits (55), Expect = 2.0
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 27 LPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
LP GW G TY+ + T TT W P PS
Sbjct: 20 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRASPS 54
Score = 23.6 bits (50), Expect = 8.9
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 73 LPEGWDMATTAEGETYFINHTTRTTSWFDP 102
LP GW G TY+ + T TT W P
Sbjct: 20 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 48
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 25.0 bits (54), Expect = 2.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 31 WDMATTAEGETYFINHTTRTTSWFDP 56
W T+EG Y+ + + + W P
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKP 34
Score = 25.0 bits (54), Expect = 2.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 77 WDMATTAEGETYFINHTTRTTSWFDP 102
W T+EG Y+ + + + W P
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKP 34
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 19 VSPGSLGPLPEGWDMATTAE-GETYFINHTTRTTSWF 54
V+P ++ P P D A Y T +F
Sbjct: 120 VAPSNILPTPPQLDDAEAVALIANYH-------TMYF 149
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 65 VSPGSLGPLPEGWDMATTAE-GETYFINHTTRTTSWF 100
V+P ++ P P D A Y T +F
Sbjct: 120 VAPSNILPTPPQLDDAEAVALIANYH-------TMYF 149
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with
NEW finding featuring PO binding to human coagulation
factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A
1vsz_A 3iyn_A 1p2z_A* 2obe_A
Length = 951
Score = 25.7 bits (56), Expect = 5.0
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 41 TYFINHTTRTTS-WFDPRIPKPSGSVSPGSLGPL-PEGWDMATTAEGETYFINHTTRTTS 98
T+++NHT + + FD + PG+ L P +++ + +GE Y + T
Sbjct: 710 TFYLNHTFKKVAITFDSSVS------WPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKD 763
Query: 99 WF 100
WF
Sbjct: 764 WF 765
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 23.8 bits (51), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDP 56
G LP GW A G TY+ + + +T W P
Sbjct: 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37
Score = 23.8 bits (51), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDP 102
G LP GW A G TY+ + + +T W P
Sbjct: 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of
matrix- metalloproteinase, metalloprotease; 2.70A {Homo
sapiens} SCOP: b.66.1.1
Length = 207
Score = 25.4 bits (55), Expect = 6.0
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 9/89 (10%)
Query: 7 GKNRVVPKPSGSVSPGSLGPLPEGWDMATTAEGETYFI--NHTTRTTSWFDPRIPKPSGS 64
G P P +P D T+ GET R + S
Sbjct: 3 GPGDEDPNPKHPKTP-DKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKS 61
Query: 65 VSPGSLGPLPEGWDMA--TTAEGETYFIN 91
P LP D A + +
Sbjct: 62 FWPE----LPNRIDAAYEHPSHDLIFIFR 86
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 24.0 bits (51), Expect = 7.4
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 18/68 (26%)
Query: 20 SPGSLGPLPEGWDMATTAEGETYFINH------------------TTRTTSWFDPRIPKP 61
S GS GPLP E Y+ H T + WFD R+P+P
Sbjct: 2 SSGSSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQP 61
Query: 62 SGSVSPGS 69
+ P S
Sbjct: 62 AEVSGPSS 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.446
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,080,170
Number of extensions: 108902
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 111
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)