RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2339
(125 letters)
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 62.1 bits (151), Expect = 5e-15
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 17 GSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGS 64
V LGPLP GW+ T +G +FINH + T W DPR+ + +
Sbjct: 2 SPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAIT 49
Score = 60.1 bits (146), Expect = 3e-14
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 63 GSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPRS 107
V LGPLP GW+ T +G +FINH + T W DPR+
Sbjct: 2 SPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNV 46
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 60.9 bits (148), Expect = 1e-14
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 23 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 58
+LGPLP+GW+ ++ YF+NH RTT W DPR
Sbjct: 9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44
Score = 60.9 bits (148), Expect = 1e-14
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 69 SLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRI 104
+LGPLP+GW+ ++ YF+NH RTT W DPR
Sbjct: 9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 59.4 bits (144), Expect = 6e-14
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 26 PLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPS 62
PLP GW+MA T+ G+ YF NH +TT+W DPR S
Sbjct: 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44
Score = 56.7 bits (137), Expect = 5e-13
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 72 PLPEGWDMATTAEGETYFINHTTRTTSWFDPRIP 105
PLP GW+MA T+ G+ YF NH +TT+W DPR
Sbjct: 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 58.1 bits (141), Expect = 1e-13
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 25 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 57
GPLP GW++ TA GE +F++H TR T++ DPR
Sbjct: 1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33
Score = 58.1 bits (141), Expect = 1e-13
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 71 GPLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103
GPLP GW++ TA GE +F++H TR T++ DPR
Sbjct: 1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 43.1 bits (102), Expect = 9e-08
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 27 LPEGWDMATTAE-GETYFINHTTRTTSWFDP 56
LP GW+ + G Y+ NH T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
Score = 43.1 bits (102), Expect = 9e-08
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 73 LPEGWDMATTAE-GETYFINHTTRTTSWFDP 102
LP GW+ + G Y+ NH T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 36.3 bits (84), Expect = 4e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 PLPEGWDMATTAEGETYFINHTTRTTSWFDPR 57
W TA+G+TY+ N+ T ++W P+
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34
Score = 36.3 bits (84), Expect = 4e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 72 PLPEGWDMATTAEGETYFINHTTRTTSWFDPR 103
W TA+G+TY+ N+ T ++W P+
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 36.3 bits (84), Expect = 5e-05
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 30 GWDMATTAEGETYFINHTTRTTSWFDPRIPK 60
GW A TA+G+ Y+ N TTR TSW P K
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPAFEK 45
Score = 36.3 bits (84), Expect = 5e-05
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 76 GWDMATTAEGETYFINHTTRTTSWFDPR 103
GW A TA+G+ Y+ N TTR TSW P
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPA 42
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 38
Score = 28.7 bits (64), Expect = 0.027
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 31 WDMATTAEGETYFINHTTRTTSW 53
W+ A + Y+INH T+TT W
Sbjct: 15 WERAISPNKVPYYINHETQTTCW 37
Score = 28.7 bits (64), Expect = 0.027
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 77 WDMATTAEGETYFINHTTRTTSW 99
W+ A + Y+INH T+TT W
Sbjct: 15 WERAISPNKVPYYINHETQTTCW 37
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein
HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.4 bits (61), Expect = 0.084
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 31 WDMATTAEGETYFINHTTRTTSWFDP 56
W + +G TY+ N T+ ++W P
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
Score = 27.4 bits (61), Expect = 0.084
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 77 WDMATTAEGETYFINHTTRTTSWFDP 102
W + +G TY+ N T+ ++W P
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 29
Score = 27.0 bits (60), Expect = 0.095
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 31 WDMATTAEGETYFINHTTRTTSWFDP 56
W A A G Y+ N T+ ++W P
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKP 29
Score = 27.0 bits (60), Expect = 0.095
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 77 WDMATTAEGETYFINHTTRTTSWFDP 102
W A A G Y+ N T+ ++W P
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKP 29
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 26.3 bits (58), Expect = 0.24
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 31 WDMATTAEGETYFINHTTRTTSWFDP 56
W T+EG Y+ + + + W P
Sbjct: 3 WVEGITSEGYHYYYDLISGASQWEKP 28
Score = 26.3 bits (58), Expect = 0.24
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 77 WDMATTAEGETYFINHTTRTTSWFDP 102
W T+EG Y+ + + + W P
Sbjct: 3 WVEGITSEGYHYYYDLISGASQWEKP 28
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
(Hansenula polymorpha) [TaxId: 4905]}
Length = 436
Score = 23.7 bits (51), Expect = 9.3
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 5/105 (4%)
Query: 14 KPSGSVSPGSLGPLPEGWDMATTAEGETYFINHTTRTTSWFDPRIPKPSGSVSPGSLGPL 73
+ +G ++ LG E T NH + DPRI S +
Sbjct: 188 RLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSS 247
Query: 74 PEGWDMATTAEGETYFINHTTRTTSW-----FDPRIPRSHHGINP 113
P G ++ TT T ++ RS NP
Sbjct: 248 PYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNP 292
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.446
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,789
Number of extensions: 22880
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 26
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.4 bits)