BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy234
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N S + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + C +AVFL++
Sbjct: 174 FINVSILIRGISKGIERFAKIAMPTLFC-LAVFLVIR----------------------- 209
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 210 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 265
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 266 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 323
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 324 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 382
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 383 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 430
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 431 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 484
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAQMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 170 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 205
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 206 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 261
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 262 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 319
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 320 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 378
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 379 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 426
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 427 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 480
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 173 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 208
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 209 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 264
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 265 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 322
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 323 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 381
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 382 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 429
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 430 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 483
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 171 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 206
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 207 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 262
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 263 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 320
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 321 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 379
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 380 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 427
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 428 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 481
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 134/316 (42%), Gaps = 29/316 (9%)
Query: 111 KGVRSAGKAVWVT--ALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDA 168
KG+ K T LA ++V+ + L AD G+ + TP + KLK+ VWI A
Sbjct: 185 KGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAA 243
Query: 169 ASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMA 226
QIFF+L GFG ++ +SY + D + + +++N + G I + + +
Sbjct: 244 VGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFG 303
Query: 227 HVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMIT 286
++A G G FI P + G F ++F +L GL S+ ++ MI
Sbjct: 304 VANAVAIAKAGAFNLG--FITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIA 361
Query: 287 ALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAI 339
L DE +L +H ++ A +V F +LV FLN + + +
Sbjct: 362 FLEDEL-KLSRKHAVLWTAAIVFF------------SAHLVMFLNKSLDEMDFWAGTIGV 408
Query: 340 LFVVFVEAAGVCWIYGVDRFSTDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGY 398
+F E WI+G D+ +I + P +Y+ + YI+P FL + V Y
Sbjct: 409 VFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREY 467
Query: 399 EDMISGEYVYPPWSIR 414
I E + W R
Sbjct: 468 IPKIMEETHWTVWITR 483
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 146/355 (41%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL ++ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLVASIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L G G ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAQMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L G G ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIF +L GFG ++ +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFATLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL S+ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 54/355 (15%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
F S+L + S G++R I + L ++AVFL++
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
V ++ G A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +S
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASA 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
+ D + + +++N + G I + + + ++A G G FI
Sbjct: 269 VRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
P + G F ++F +L GL ++ ++ MI L DE +L +H ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLVASIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
V F +LV FLN + + ++F E WI+G D+
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
+I + P +Y+ + YI+P FL + V Y I E + W R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|1AIN|A Chain A, Crystal Structure Of Human Annexin I At 2.5 Angstroms
Resolution
Length = 314
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 187 SSYNKFDNNCYRDAILTSSI-NCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVF 245
+ Y+K D N D L I CLT+ + S + A ++++ VG L+
Sbjct: 209 TKYSKHDMNKVLDLELKGDIEKCLTAIVK--CATSKPAFFAEKLHQAMKGVGTRHKALIR 266
Query: 246 I-VYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALC 289
I V I M F+ ++ + L LD T G E ++ ALC
Sbjct: 267 IMVSRSEIDMNDIKAFYQKMYGISLCQAILDETKGDYEKILVALC 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,530,025
Number of Sequences: 62578
Number of extensions: 548617
Number of successful extensions: 1411
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 23
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)