Query psy234
Match_columns 445
No_of_seqs 194 out of 1528
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 22:04:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3660|consensus 100.0 2.4E-94 5.1E-99 756.7 26.7 440 1-441 113-565 (629)
2 KOG3659|consensus 100.0 3.5E-94 7.6E-99 727.6 25.4 444 1-444 157-609 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 1.4E-92 3E-97 747.6 10.7 435 1-438 80-523 (523)
4 COG0733 Na+-dependent transpor 100.0 1.8E-67 3.8E-72 525.0 20.2 346 2-396 87-434 (439)
5 PRK11375 allantoin permease; P 94.8 1.8 3.8E-05 45.9 17.7 48 95-142 159-206 (484)
6 TIGR00837 araaP aromatic amino 92.6 0.76 1.7E-05 46.7 9.9 174 107-294 127-301 (381)
7 TIGR00912 2A0309 spore germina 92.6 2.5 5.4E-05 42.5 13.6 94 104-204 125-219 (359)
8 PF02028 BCCT: BCCT family tra 91.9 0.53 1.1E-05 49.6 7.8 84 204-290 336-423 (485)
9 PF03845 Spore_permease: Spore 91.7 9 0.00019 37.9 16.2 95 103-205 122-216 (320)
10 PRK10249 phenylalanine transpo 91.5 12 0.00025 39.2 17.5 99 102-202 143-248 (458)
11 COG3949 Uncharacterized membra 90.3 6.4 0.00014 39.2 12.9 123 148-293 165-290 (349)
12 TIGR00842 bcct choline/carniti 89.9 1.8 4E-05 45.2 9.5 42 246-287 343-384 (453)
13 PF02133 Transp_cyt_pur: Perme 89.6 3.4 7.3E-05 42.9 11.3 50 94-143 137-186 (440)
14 TIGR00911 2A0308 L-type amino 87.8 28 0.00062 36.7 17.1 108 104-214 175-286 (501)
15 TIGR00913 2A0310 amino acid pe 87.4 38 0.00082 35.5 17.7 25 419-443 446-470 (478)
16 COG1953 FUI1 Cytosine/uracil/t 87.2 23 0.00049 37.3 15.2 51 93-143 170-220 (497)
17 TIGR00814 stp serine transport 86.5 7.3 0.00016 40.1 11.3 78 106-190 134-213 (397)
18 PF03222 Trp_Tyr_perm: Tryptop 85.3 17 0.00037 37.3 13.4 125 162-294 183-307 (394)
19 TIGR00800 ncs1 NCS1 nucleoside 85.1 34 0.00074 35.6 15.7 25 276-300 311-335 (442)
20 PRK00701 manganese transport p 84.7 37 0.0008 35.5 15.6 35 257-292 304-338 (439)
21 TIGR00796 livcs branched-chain 84.7 13 0.00028 38.1 11.9 32 262-293 270-301 (378)
22 PF05525 Branch_AA_trans: Bran 83.2 8.3 0.00018 40.0 9.8 55 257-314 271-325 (427)
23 COG1457 CodB Purine-cytosine p 80.1 44 0.00095 34.9 13.8 96 108-212 144-240 (442)
24 PRK15433 branched-chain amino 78.9 41 0.00089 35.1 13.1 164 106-293 135-311 (439)
25 PRK10435 cadB lysine/cadaverin 78.8 17 0.00036 37.8 10.6 114 96-216 124-240 (435)
26 PF01235 Na_Ala_symp: Sodium:a 78.6 30 0.00066 35.8 12.1 169 103-289 148-338 (416)
27 PRK03356 L-carnitine/gamma-but 77.3 10 0.00022 40.2 8.4 44 246-289 392-435 (504)
28 TIGR03813 put_Glu_GABA_T putat 76.9 1E+02 0.0022 32.3 18.0 38 96-134 126-167 (474)
29 PRK09950 putative transporter; 75.2 8.7 0.00019 40.8 7.2 44 246-289 389-432 (506)
30 PF13520 AA_permease_2: Amino 74.8 74 0.0016 32.5 14.1 97 102-203 126-226 (426)
31 TIGR00909 2A0306 amino acid tr 74.6 40 0.00086 34.7 12.0 99 104-210 143-242 (429)
32 PF01566 Nramp: Natural resist 73.8 78 0.0017 31.9 13.6 37 257-293 249-286 (358)
33 TIGR00907 2A0304 amino acid pe 73.3 1.2E+02 0.0027 31.6 16.4 37 164-201 218-255 (482)
34 COG1114 BrnQ Branched-chain am 73.2 39 0.00084 34.8 10.9 179 94-293 120-309 (431)
35 PRK09928 choline transport pro 72.2 22 0.00048 39.0 9.5 41 246-286 396-436 (679)
36 TIGR00905 2A0302 transporter, 71.8 51 0.0011 34.6 12.1 99 105-210 140-245 (473)
37 PRK15035 cytochrome bd-II oxid 71.2 3.2 7E-05 43.8 2.8 113 252-364 7-126 (514)
38 PF00324 AA_permease: Amino ac 70.1 41 0.00088 35.3 11.0 104 102-206 125-243 (478)
39 PRK10483 tryptophan permease; 69.4 50 0.0011 34.3 11.0 45 250-294 271-315 (414)
40 PRK09664 tryptophan permease T 68.5 49 0.0011 34.3 10.7 38 166-204 196-233 (415)
41 PRK15097 cytochrome d terminal 67.8 4.5 9.8E-05 42.8 3.0 114 252-365 7-127 (522)
42 TIGR03810 arg_ornith_anti argi 66.7 54 0.0012 34.3 11.0 37 164-201 196-232 (468)
43 PRK11387 S-methylmethionine tr 66.4 1.7E+02 0.0037 30.5 17.8 38 164-202 207-245 (471)
44 COG1271 CydA Cytochrome bd-typ 66.2 5.5 0.00012 41.5 3.3 113 252-364 7-126 (457)
45 PRK11021 putative transporter; 58.3 1.8E+02 0.0039 29.7 12.9 102 104-213 125-227 (410)
46 COG1292 BetT Choline-glycine b 58.2 13 0.00028 39.4 4.3 35 250-284 396-430 (537)
47 TIGR03428 ureacarb_perm permea 57.6 2.5E+02 0.0053 29.4 14.2 98 103-203 153-253 (475)
48 PRK10746 putative transport pr 53.9 2.8E+02 0.0061 28.9 15.7 39 162-201 199-238 (461)
49 PRK10238 aromatic amino acid t 53.5 2.8E+02 0.0061 28.8 17.7 22 103-124 135-156 (456)
50 PRK10655 potE putrescine trans 53.2 73 0.0016 32.9 9.1 98 105-211 134-237 (438)
51 TIGR00910 2A0307_GadC glutamat 48.6 3.6E+02 0.0078 28.6 15.9 26 96-122 126-151 (507)
52 COG1914 MntH Mn2+ and Fe2+ tra 48.2 3.4E+02 0.0073 28.2 19.6 50 381-434 361-410 (416)
53 PRK10644 arginine:agmatin anti 48.2 3.3E+02 0.0072 28.1 18.1 102 106-214 137-242 (445)
54 TIGR02358 thia_cytX probable h 47.7 3.2E+02 0.007 27.8 14.7 28 267-294 251-278 (386)
55 COG0814 SdaC Amino acid permea 44.8 3.7E+02 0.0081 27.7 13.9 61 162-223 192-254 (415)
56 PRK15132 tyrosine transporter 43.6 3.9E+02 0.0084 27.6 12.8 23 271-293 281-303 (403)
57 COG0531 PotE Amino acid transp 39.5 4.3E+02 0.0094 27.0 12.6 96 103-201 143-239 (466)
58 PRK11049 D-alanine/D-serine/gl 36.2 5.2E+02 0.011 26.9 16.7 36 164-200 212-248 (469)
59 PRK11357 frlA putative fructos 32.0 5.2E+02 0.011 26.6 11.5 47 163-210 195-242 (445)
60 PRK15049 L-asparagine permease 31.0 6.6E+02 0.014 26.5 19.6 24 104-127 154-177 (499)
61 PRK10836 lysine transporter; P 27.8 7.2E+02 0.016 26.0 18.7 14 426-439 460-473 (489)
62 COG1115 AlsT Na+/alanine sympo 25.2 2.4E+02 0.0052 29.5 7.2 174 103-289 192-382 (452)
63 PRK11017 codB cytosine permeas 25.1 7.5E+02 0.016 25.3 13.4 28 265-292 260-287 (404)
64 TIGR00835 agcS amino acid carr 24.3 8.2E+02 0.018 25.5 14.0 115 103-219 175-305 (425)
65 PF06281 DUF1035: Protein of u 23.2 44 0.00094 25.0 1.0 20 420-439 54-73 (73)
66 PRK15238 inner membrane transp 22.6 9E+02 0.02 25.3 17.8 45 163-208 211-256 (496)
67 TIGR02119 panF sodium/pantothe 20.2 4.4E+02 0.0095 27.5 8.4 41 247-289 306-347 (471)
No 1
>KOG3660|consensus
Probab=100.00 E-value=2.4e-94 Score=756.67 Aligned_cols=440 Identities=49% Similarity=0.975 Sum_probs=413.4
Q ss_pred CcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCcccccccccc---C-------CCCchHHH
Q psy234 1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNY---T-------SSSPAKEF 70 (445)
Q Consensus 1 ~~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lpW~~C~~~wn~~~c~~~~~~~~~---~-------~~~~~~~~ 70 (445)
|||+|+++++++..+++||+++++|+++|+++||++++||++|+|+||+++|.+.+...++ + ..++..++
T Consensus 113 f~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (629)
T KOG3660|consen 113 FKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEF 192 (629)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccccccccccchhhhccchhhh
Confidence 6999999999999999999999999999999999999999999999999999875543221 1 12356777
Q ss_pred HHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccce
Q psy234 71 FERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRY 150 (445)
Q Consensus 71 f~~~vl~~~~s~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~ 150 (445)
+.+..++....+++++.|+.+|++++|++++|++++++++||+|++||++|+++++||++|++|++|++|||||.+|++|
T Consensus 193 ~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~ 272 (629)
T KOG3660|consen 193 WENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINF 272 (629)
T ss_pred hhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHH
Confidence 77766553212258889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccC
Q psy234 151 YLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQN 230 (445)
Q Consensus 151 ~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~ 230 (445)
+++|||+||.|+++|.||..|+|||+|+|+|+++++|||||++||+.||+.++++.|+.+|+++|+++|+++||++++++
T Consensus 273 ~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~ 352 (629)
T KOG3660|consen 273 YLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQG 352 (629)
T ss_pred HHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ccccccccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHH
Q psy234 231 K-SVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVT 309 (445)
Q Consensus 231 ~-~~~~~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~ 309 (445)
. +++++..+|++|+|++||+++++||.+++|+.+||+|++++|++|++.++|.+++++.|+||+ ++++|+.+++.+|+
T Consensus 353 v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~-~~~~~~~~vl~vcv 431 (629)
T KOG3660|consen 353 VSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPR-LRNRRWIVVLFVCV 431 (629)
T ss_pred CcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-ccccchhhhHHHHH
Confidence 8 888888999999999999999999999999999999999999999999999999999999994 45567778888999
Q ss_pred hhhhhccccccccchhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcC-CCCccccceeeeeehHHHHH
Q psy234 310 FVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLG-HRPGLYWRLCWTYISPFFLL 388 (445)
Q Consensus 310 ~~~l~gl~~~~~~G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g-~~~~~~w~~~~~~v~Pi~l~ 388 (445)
+.|++|++++|++|.|+++++|.|..+..+++++++|+++++|+||.||+++|+++|.| .++..+|+++|++++|+++.
T Consensus 432 ~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~ 511 (629)
T KOG3660|consen 432 VGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLL 511 (629)
T ss_pred HHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHhhcccccccC-CccCchhHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy234 389 TIFVFSLLGYEDMISG-EYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGP 441 (445)
Q Consensus 389 ~i~~~~~~~~~~~~~~-~~~yp~w~~~~gw~~~~~~~l~ip~~~i~~~~~~~g~ 441 (445)
.+++++.+++++.+++ .|.||.|.+.+||++++.|+++||++++++++|++|+
T Consensus 512 ~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~~~~~~~~ 565 (629)
T KOG3660|consen 512 GILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQILRAKGT 565 (629)
T ss_pred HHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999998887 7899999999999999999999999999999999997
No 2
>KOG3659|consensus
Probab=100.00 E-value=3.5e-94 Score=727.58 Aligned_cols=444 Identities=59% Similarity=1.110 Sum_probs=422.3
Q ss_pred CcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCcccccccccc----CCCCchHHHHHHHHh
Q psy234 1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNY----TSSSPAKEFFERSVL 76 (445)
Q Consensus 1 ~~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lpW~~C~~~wn~~~c~~~~~~~~~----~~~~~~~~~f~~~vl 76 (445)
|||+|++++++++++..||+++++|+++|+++||++++||++|+|+||+++|.+.+...|+ ...++++|||++.++
T Consensus 157 l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~l 236 (629)
T KOG3659|consen 157 LKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKVL 236 (629)
T ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCCCccCccccccCchhhhccchhHHHHHhhcc
Confidence 6999999999999999999999999999999999999999999999999999987653332 345689999999999
Q ss_pred ccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCc
Q psy234 77 EQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQW 156 (445)
Q Consensus 77 ~~~~s~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~ 156 (445)
+...+++++|.|+++|.+.+|++++|++++++++||+|++||++++++++|++++.++++|+++||||..|+.|+++||+
T Consensus 237 ~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~ 316 (629)
T KOG3659|consen 237 GLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDI 316 (629)
T ss_pred cccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccH
Confidence 98778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhc---cCccc
Q psy234 157 HKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHV---QNKSV 233 (445)
Q Consensus 157 ~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~---~~~~~ 233 (445)
+|+.++++|.||++|+|||||+|+|+++++|||||+|||+.|||+++++.|.++++++|+++|+++||+++. .+.+.
T Consensus 317 ~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~ 396 (629)
T KOG3659|consen 317 EKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEI 396 (629)
T ss_pred HHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 66666
Q ss_pred cc-ccccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhh
Q psy234 234 AD-VGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVY 312 (445)
Q Consensus 234 ~~-~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~ 312 (445)
++ +..+||||+|+++||+.++||.+.+|+++||+||...|++|+++.+|.+++++.|++++.++|+|...++.+|++.+
T Consensus 397 e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~e~iit~l~d~~~~~l~~~~e~~~~~~~l~~~ 476 (629)
T KOG3659|consen 397 EELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLVCLFSF 476 (629)
T ss_pred HHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhHHHHhccccchhhhHhhhhHHHHHHHHHHHHH
Confidence 66 56689999999999999999999999999999999999999999999999999999977788889988999999999
Q ss_pred hhccccccccchhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcCCCCccccceeeeeehHHHHHHHHH
Q psy234 313 ICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFV 392 (445)
Q Consensus 313 l~gl~~~~~~G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g~~~~~~w~~~~~~v~Pi~l~~i~~ 392 (445)
++|+++++.+|.|..+++++|..+..+++.+++|.++++|+||.+||.+|+++|+|++|..+|++||..++|+++..+++
T Consensus 477 ~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~ll~if~ 556 (629)
T KOG3659|consen 477 LLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVFLLFIFV 556 (629)
T ss_pred hhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccCCccCchhHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCcC
Q psy234 393 FSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPG-PLIK 444 (445)
Q Consensus 393 ~~~~~~~~~~~~~~~yp~w~~~~gw~~~~~~~l~ip~~~i~~~~~~~g-~~~~ 444 (445)
.....+++.....|.||.|+.++||.+..++.++||.+++|++.+++| +.+|
T Consensus 557 ~~~~~~~~~~~~~y~yp~Wa~~l~~~i~~ss~~~ip~~~~y~~~~~~~~~~~~ 609 (629)
T KOG3659|consen 557 FSLRNFSPIQVVIYAYPDWALVLGWAIRASSKICIPLYAIYKFVSRRGVSGKE 609 (629)
T ss_pred HHHhccccceEEeecCCchHHHHHHHHHhhHHHHHhHHhhheeeecCCCCchh
Confidence 999888888888899999999999999999999999999999998886 6543
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=1.4e-92 Score=747.62 Aligned_cols=435 Identities=45% Similarity=0.950 Sum_probs=317.8
Q ss_pred CcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccccccc--------c-CCCCchHHHH
Q psy234 1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVN--------Y-TSSSPAKEFF 71 (445)
Q Consensus 1 ~~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lpW~~C~~~wn~~~c~~~~~~~~--------~-~~~~~~~~~f 71 (445)
+||+|+++++.++++++||+++++|+++|+++|+++++||++|+|+||+++|.+...+.+ . ...++++|||
T Consensus 80 ~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ff 159 (523)
T PF00209_consen 80 FKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSNSSSYNFTQRISPAEEFF 159 (523)
T ss_dssp HHTHHHH---HHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 489999999999999999999999999999999999999999999999999976443211 1 2346789999
Q ss_pred HHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCccccccee
Q psy234 72 ERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYY 151 (445)
Q Consensus 72 ~~~vl~~~~s~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~ 151 (445)
+++++|. ++++++.|+++|+++++++++|+++++++.||+|+.||+++++.++|+++++++++|++||||+.+|++|+
T Consensus 160 ~~~vl~~--s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~ 237 (523)
T PF00209_consen 160 YREVLQI--SDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFL 237 (523)
T ss_dssp -----------------------HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHH
T ss_pred ccccccc--ccccccccchhHHHHHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEE
Confidence 9999984 68888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCc
Q psy234 152 LTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNK 231 (445)
Q Consensus 152 f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~ 231 (445)
++|||+++.|+++|.+|++|+|||+|+|+|++++||||+|+|+|+.||+.++++.|+++|++||+++|+++||+++..+.
T Consensus 238 ~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~ 317 (523)
T PF00209_consen 238 FTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGV 317 (523)
T ss_dssp HSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHH
T ss_pred ecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccccccccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhh
Q psy234 232 SVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFV 311 (445)
Q Consensus 232 ~~~~~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~ 311 (445)
+++++..+||+|+|+++|+++++||+|++|+++||++++++|++|+++++|++++.++|+++++ +|+|+..+..+|+..
T Consensus 318 ~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~-~~~r~~~~~~v~~~~ 396 (523)
T PF00209_consen 318 PISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPIS-RKKRKKVTLIVCLVG 396 (523)
T ss_dssp HHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-----HHHHHHHHHHHHH
T ss_pred ChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCccc-hhhccceeHHHhhhH
Confidence 8888778999999999999999999999999999999999999999999999999999999853 346666677889999
Q ss_pred hhhccccccccchhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcCCCCccccceeeeeehHHHHHHHH
Q psy234 312 YICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIF 391 (445)
Q Consensus 312 ~l~gl~~~~~~G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g~~~~~~w~~~~~~v~Pi~l~~i~ 391 (445)
+++|+|+++++|.+++|++|++..+..+++.+++|+++++|+||.||+++|+++|.|++++++|+++|||++|+++++++
T Consensus 397 ~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~~~~~di~~~~g~~~~~~w~~~w~~v~Pi~ll~il 476 (523)
T PF00209_consen 397 FLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWDRFREDINEMLGFKPGKFWKFLWKYVTPIILLVIL 476 (523)
T ss_dssp HHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHHHHHHHHHTT-SS---THHHHHHHTHHHHHHHHHH
T ss_pred eEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheeccccceehhhhhcccccccHHHHHHhhEEEeeccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccCCccCchhHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy234 392 VFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTT 438 (445)
Q Consensus 392 ~~~~~~~~~~~~~~~~yp~w~~~~gw~~~~~~~l~ip~~~i~~~~~~ 438 (445)
++++.++++..++++.||.|++.+||.++++++++||++++||++|+
T Consensus 477 i~~i~~~~~~~~~~~~yp~w~~~igw~i~~~~~l~Ip~~~i~~~~~~ 523 (523)
T PF00209_consen 477 IWSIIDYKPLSYNSYIYPWWAIAIGWLIALSPLLPIPIYAIYKICRT 523 (523)
T ss_dssp HHHHHHTHHHHHHSS-TTHHHHHHHH---------------------
T ss_pred eeeEEecCCCCCcceEEhHheEEEEEEecccccccccccccccccCC
Confidence 99998887767777899999999999999999999999999999985
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=1.8e-67 Score=525.01 Aligned_cols=346 Identities=28% Similarity=0.519 Sum_probs=305.5
Q ss_pred cchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccccccccCCCCchHHHHHHHHhccccC
Q psy234 2 LGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRS 81 (445)
Q Consensus 2 ~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lpW~~C~~~wn~~~c~~~~~~~~~~~~~~~~~~f~~~vl~~~~s 81 (445)
+.+||..++.++.+++||+||.||++.|++.|+++.+| ++ .+...++|.+.. +
T Consensus 87 ~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~---------------------~~~~~~~f~~~~-----~ 139 (439)
T COG0733 87 EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DT---------------------GEQFAQLFGQTI-----S 139 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC---------------------hhHHHHHHHHHh-----c
Confidence 67999999999999999999999999999999999875 10 112344554432 2
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHH--HHHHHHHHhhhcccCCcccccceeeecCcccc
Q psy234 82 DGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAP--YVVLIILLCRGVTLPGADEGIRYYLTPQWHKL 159 (445)
Q Consensus 82 ~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p--~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l 159 (445)
+ .......+.+++++++.++..++.|||||.+|+ +|| ++++++|++|++|||||.||++|+|+||||++
T Consensus 140 ~----~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~ki-----mMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l 210 (439)
T COG0733 140 N----PGLAVIFHLLFLVLTALIVSRGVKKGIEKANKI-----MMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKL 210 (439)
T ss_pred C----chHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHc
Confidence 1 122333456777788888999999999999999 567 68899999999999999999999999999999
Q ss_pred cCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCccccccccc
Q psy234 160 KNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLE 239 (445)
Q Consensus 160 ~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~~~~~~~~~ 239 (445)
.|+++|.+|+||+|||||+|+|.|+|||||.+||+|+.+++..++..|+.+|++||++|||+++++... ..+
T Consensus 211 ~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--------~~~ 282 (439)
T COG0733 211 TDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD--------ASQ 282 (439)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999865432 357
Q ss_pred CCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhhhhccccc
Q psy234 240 GPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTT 319 (445)
Q Consensus 240 G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~l~gl~~~ 319 (445)
||||+|+++|++|+|||.|++++++||+++.+||+||+++|+|++++.++|+++ .+|+ ..+...+...++.|+|+.
T Consensus 283 GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~--~~R~--~a~~~~~~~~fl~gi~~~ 358 (439)
T COG0733 283 GPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFG--ISRK--KATWLIGILIFLLGIPSI 358 (439)
T ss_pred CCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cchH--HHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999999999985 3444 455677888999999999
Q ss_pred cccchhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcCCCCccccceeeeeehHHHHHHHHHHHhh
Q psy234 320 TYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLL 396 (445)
Q Consensus 320 ~~~G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g~~~~~~w~~~~~~v~Pi~l~~i~~~~~~ 396 (445)
+..|.+++|..|+......++..++.++++++|++++|+.++|+++..+ +.+.+|+++.||++|++++.+++..+.
T Consensus 359 ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~~~~~~~~~~s~-~~~~~w~~~vr~i~Pi~i~~vl~~~~~ 434 (439)
T COG0733 359 LSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLREELNAGSA-KLFKIWLYLVRYIAPIVILVVLILGFY 434 (439)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999899999999999999999999999999998654 778899999999999999999987653
No 5
>PRK11375 allantoin permease; Provisional
Probab=94.83 E-value=1.8 Score=45.87 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccC
Q psy234 95 ALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLP 142 (445)
Q Consensus 95 ~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ 142 (445)
..+.++.|++.......|.|+..|...+..++-+++++.+.+..++.-
T Consensus 159 ~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~ 206 (484)
T PRK11375 159 LITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV 206 (484)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777777777888888777766654443445566666666654
No 6
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=92.58 E-value=0.76 Score=46.71 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=75.3
Q ss_pred HHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhccccccceee
Q psy234 107 FSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLAL 186 (445)
Q Consensus 107 ~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity 186 (445)
....+|+|..+|+.......-.+.++.+.+.+... . +. +. +.|....-.+......|..-.+++.|. .+.+...
T Consensus 127 ~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~--~-~~-~~-~~~~~~~~~~~~~~~~a~~~~~~~fg~-~~~i~~~ 200 (381)
T TIGR00837 127 SFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPH--V-KG-DL-LLDVALDTSYWPYILSALPVCLTSFGF-HGNVPSL 200 (381)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cH-HH-HhcCccccccHHHHHHHHHHHHHHHHc-ccccHHH
Confidence 45678998888887654333222222222222221 1 10 11 122111111233455777777777742 2445555
Q ss_pred ccccc-CCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCcccccccccCCceehhhHHHHHHhccchhHHHHHH
Q psy234 187 SSYNK-FDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIF 265 (445)
Q Consensus 187 ~Sy~~-~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~~~~~~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lF 265 (445)
..+.+ +++|+.|....-...-+...++...+....+++ +++.+...++... -.+.++..++-++...+.+.
T Consensus 201 ~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~------~~l~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~v 272 (381)
T TIGR00837 201 YKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPR------SEFLPIIAKGGNL--DGLVNALQGVLKSSAIELAL 272 (381)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHcCCCh--HHHHHHHHHhccchHHHHHH
Confidence 56554 444555554443333333333322222222211 1111111111111 11233444432233223333
Q ss_pred HHHHHHHhhhhcccchhhHHHHhhhcCCC
Q psy234 266 FLMLITLGLDSTFGGLEAMITALCDEYPR 294 (445)
Q Consensus 266 Fl~l~~agl~S~i~~lE~iv~~l~d~~~~ 294 (445)
-..-.++-.+|..+...+..+.+.|.+++
T Consensus 273 ~~~~~~al~tS~~g~~l~~~d~l~~~~~~ 301 (381)
T TIGR00837 273 ELFSNFALASSFLGVTLGLFDYLADLFKF 301 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333445577777777777778877654
No 7
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.57 E-value=2.5 Score=42.52 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHhhhccchhHHHHHhhHHHHHHH-HHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhcccccc
Q psy234 104 LVYFSLWKGVRSAGKAVWVTALAPYVVLI-ILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182 (445)
Q Consensus 104 iv~~~v~kGI~~~gKv~~~~~~~p~vll~-~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~ 182 (445)
++.....+|+|..+|+.... .|..+.. .++.-.+..+. . ..++ +.|-+++= ..+.+..+...++++.+ |+..
T Consensus 125 ~~~~~~~~Gi~~i~r~~~i~--~~~~i~~~~~il~~~~~~~-~-~~~~-l~P~~~~g-~~~~~~~~~~~~~~~f~-g~~i 197 (359)
T TIGR00912 125 VSIYIVRKGIEVLLRTAEIL--LIIFLILFILVLILLAPKL-G-NIKN-LLPVLENG-LSPILKGAYPVVTFAFG-EIEI 197 (359)
T ss_pred HHHHHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc-c-cHHH-ccCccccC-cHHHHhhhhHHhhhhhH-HHHH
Confidence 34456789999999987653 4443322 12222222221 1 1222 34555431 13455555546777774 7777
Q ss_pred ceeecccccCCCCcccchhhhh
Q psy234 183 LLALSSYNKFDNNCYRDAILTS 204 (445)
Q Consensus 183 ~ity~Sy~~~~~n~~~~a~~v~ 204 (445)
+..+..+.++++|..|....-.
T Consensus 198 ~~~~~~~~~~~~~~~k~~~~~~ 219 (359)
T TIGR00912 198 FFLLFPLLSKKKKIKKSIIKAI 219 (359)
T ss_pred HHHHHHHhCChhhhHHHHHHHH
Confidence 7777788887777776654433
No 8
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=91.87 E-value=0.53 Score=49.64 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh---cc-CcccccccccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhccc
Q psy234 204 SSINCLTSFLAGFVIFSVLGYMAH---VQ-NKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFG 279 (445)
Q Consensus 204 ~~~~~~~silag~~if~~~g~~~~---~~-~~~~~~~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~ 279 (445)
.+.+.+.--+.+.+-|+++|-.+- .+ ..++.+..++|+. .+.-+.++++|.+++...++.+++++.=.||.=+
T Consensus 336 il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~---~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS 412 (485)
T PF02028_consen 336 ILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPE---AALFAFLEQLPLSKILSILFLILIFIFFVTSADS 412 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HH---HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 334555555556666777653221 11 1122222223443 3445778999999999999999888888888777
Q ss_pred chhhHHHHhhh
Q psy234 280 GLEAMITALCD 290 (445)
Q Consensus 280 ~lE~iv~~l~d 290 (445)
...++.+.-.+
T Consensus 413 ~~~~la~~s~~ 423 (485)
T PF02028_consen 413 ATYVLAMLSSK 423 (485)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHcC
Confidence 77666655544
No 9
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=91.72 E-value=9 Score=37.93 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhcccccc
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~ 182 (445)
+++..+..||+|..+|+... .+|..++..+++-.+..+... . ..+.|=++. +.+-..++.-...+.. .|.-.
T Consensus 122 l~~~y~a~~G~e~i~R~~~~--~~~~~~i~~~~i~~~~~~~~~--~-~~l~P~~~~--g~~~i~~~~~~~~~~~-~~~~~ 193 (320)
T PF03845_consen 122 LVAAYAARKGIEVIARVAEI--LFPIFLILLLLILLLSIPNID--W-DNLLPVLES--GIKPILKGSLVISFPF-GGIEI 193 (320)
T ss_pred HHHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHHHHHhcccCC--H-HHeeCcccC--ChHHHHHHHHHHHHHH-HHHHH
Confidence 45666789999999986544 456554444444444444321 1 123443332 2222233333333333 24444
Q ss_pred ceeecccccCCCCcccchhhhhh
Q psy234 183 LLALSSYNKFDNNCYRDAILTSS 205 (445)
Q Consensus 183 ~ity~Sy~~~~~n~~~~a~~v~~ 205 (445)
+..+.-|.+++++..|....-..
T Consensus 194 ~l~~~p~~~~~~~~~k~~~~~~~ 216 (320)
T PF03845_consen 194 LLFLFPFVKDKKKLKKSLLIAIL 216 (320)
T ss_pred HHHHHHHcCCchHHHHHHHHHHH
Confidence 55567788888777776554433
No 10
>PRK10249 phenylalanine transporter; Provisional
Probab=91.47 E-value=12 Score=39.23 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcc-----cCCcccccceeee-cCcccccCchhHHHHHHhHhhh
Q psy234 102 FLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVT-----LPGADEGIRYYLT-PQWHKLKNSKVWIDAASQIFFS 175 (445)
Q Consensus 102 w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~lt-----L~ga~~Gl~~~f~-pd~~~l~~~~vW~~A~~Q~ffS 175 (445)
..+....-.+|+|..+|+.........+.++++.+-++. -++...+.+..+. +++.. ...+.+..++.+++|+
T Consensus 143 ~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~a 221 (458)
T PRK10249 143 FIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFA-TGWNGLILSLAVIMFS 221 (458)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCC-CcHHHHHHHHHHHHHH
Confidence 334455667899988887654443333222222111111 1111122222221 11100 1224467888999998
Q ss_pred hccccccceeecccccC-CCCcccchhh
Q psy234 176 LGPGFGTLLALSSYNKF-DNNCYRDAIL 202 (445)
Q Consensus 176 lslG~G~~ity~Sy~~~-~~n~~~~a~~ 202 (445)
. .|+......+.=.|+ +.|++|....
T Consensus 222 f-~G~e~~~~~a~E~~~P~k~iPrai~~ 248 (458)
T PRK10249 222 F-GGLELIGITAAEARDPEKSIPKAVNQ 248 (458)
T ss_pred H-cCHHHHHHHHHHhcCHhhHHHHHHHH
Confidence 8 666655454433322 3455555443
No 11
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=90.26 E-value=6.4 Score=39.16 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=67.6
Q ss_pred cceeeecCcccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy234 148 IRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAH 227 (445)
Q Consensus 148 l~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~ 227 (445)
..+..++|+.+ .++=|.+|.+-.-+.+.++.+.+.+.|+..+.+.+..+.++.=.+.-+..+.+..+...+...
T Consensus 165 ~~~~a~~~~~~--~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~---- 238 (349)
T COG3949 165 LGNAAQIVLTK--QGNWKASAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLINLSLIALYD---- 238 (349)
T ss_pred ccchhhhcCCc--CCChHHHHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhcc----
Confidence 44456677776 344455666677788889999999999777777666665554433333333332222221111
Q ss_pred ccCcccccccc-cCCceehhhHHHHHHhcc--chhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCC
Q psy234 228 VQNKSVADVGL-EGPGLVFIVYPEAIAMMT--GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293 (445)
Q Consensus 228 ~~~~~~~~~~~-~G~gL~Fi~~P~~~~~~p--~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~ 293 (445)
++.+ +=| +-++.+++| .+...+++++++.+ |+.++.+-...+-++.-+|
T Consensus 239 -------~v~~~dIP------~l~i~~~~~~~i~lvm~vIi~~~Iy----tT~vg~iy~l~~r~~s~~~ 290 (349)
T COG3949 239 -------KVVNYDIP------LLTIAKNFSPLIGLVMSVIIWLEIY----TTTVGLIYGLASRLTSFFP 290 (349)
T ss_pred -------hhhccCCc------HHHHHHhccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcccCC
Confidence 1111 111 113344554 24556677777665 5556666665566655443
No 12
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=89.93 E-value=1.8 Score=45.16 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=32.9
Q ss_pred hhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHH
Q psy234 246 IVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITA 287 (445)
Q Consensus 246 i~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~ 287 (445)
.++-+.++++|.+.+...++.+++++.=.||.=|..-++...
T Consensus 343 ~a~~~~l~~lP~~~i~~~l~~il~~if~vTs~DS~s~vla~~ 384 (453)
T TIGR00842 343 RALFGLLQALPLGTITSALALIVIIIFFITSADSGALVLANT 384 (453)
T ss_pred hHHHHHHHHCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 456678899999999999998888887778877766555544
No 13
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=89.58 E-value=3.4 Score=42.93 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCC
Q psy234 94 LALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPG 143 (445)
Q Consensus 94 l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~g 143 (445)
...+.++.|++.......|.|+..|......+.-.++.+...+......+
T Consensus 137 ~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (440)
T PF02133_consen 137 LWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAG 186 (440)
T ss_dssp --HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCC
Confidence 44666777777777778888887776554322222333344455444433
No 14
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=87.75 E-value=28 Score=36.74 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=55.6
Q ss_pred HHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcc-c-CCcccccceeeecCcccc-cCchhHHHHHHhHhhhhcccc
Q psy234 104 LVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVT-L-PGADEGIRYYLTPQWHKL-KNSKVWIDAASQIFFSLGPGF 180 (445)
Q Consensus 104 iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~lt-L-~ga~~Gl~~~f~pd~~~l-~~~~vW~~A~~Q~ffSlslG~ 180 (445)
+......+|+|..+|+.........+.++++.+-++. + +|..+..+ ....++.. .+...|..|+..++|+. .|+
T Consensus 175 ~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~a~~~~~~af-~G~ 251 (501)
T TIGR00911 175 LLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLN--PKNAFEGTETSAGGIVLAFYSGIWAY-GGW 251 (501)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC--cccccCCCCCcHHHHHHHHHHHHHHH-HhH
Confidence 4445567899999998776554444332222222211 1 11111110 00111111 12456888999999998 677
Q ss_pred ccceeecccccC-CCCcccchhhhhhHHHHHHHHH
Q psy234 181 GTLLALSSYNKF-DNNCYRDAILTSSINCLTSFLA 214 (445)
Q Consensus 181 G~~ity~Sy~~~-~~n~~~~a~~v~~~~~~~sila 214 (445)
-....++.-.|+ +.|++|..........+..++.
T Consensus 252 e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~ 286 (501)
T TIGR00911 252 NYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLT 286 (501)
T ss_pred HHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHH
Confidence 776666655543 3466666555444444444433
No 15
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=87.44 E-value=38 Score=35.45 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCc
Q psy234 419 LTASSLMCIPSYIVYKLYTTPGPLI 443 (445)
Q Consensus 419 ~~~~~~l~ip~~~i~~~~~~~g~~~ 443 (445)
......+.++++..||++|.+..+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (478)
T TIGR00913 446 AYLSLPIFIALYIGHKVYKRDKLII 470 (478)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcC
Confidence 3344555677888999876543333
No 16
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=87.22 E-value=23 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCC
Q psy234 93 SLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPG 143 (445)
Q Consensus 93 ~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~g 143 (445)
..++|.++.|++...++.+|.|+..|.-....+.-++.+..++++.+..-|
T Consensus 170 ~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~ 220 (497)
T COG1953 170 LELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAG 220 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcC
Confidence 356899999999999999999999999777666666777888888887644
No 17
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=86.47 E-value=7.3 Score=40.10 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceee-ecCcccccCchhHHHHHHhHhhhhccccccce
Q psy234 106 YFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYL-TPQWHKLKNSKVWIDAASQIFFSLGPGFGTLL 184 (445)
Q Consensus 106 ~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f-~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~i 184 (445)
...+.+|.|..+|+.......-.+.++.+..... |.. |. +.+. .|+.... .+....|.-..++|.+ +...+-
T Consensus 134 ~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~li--p~~-~~-~~L~~~p~~~~~--~~~i~~alpv~~~SF~-~~~iIs 206 (397)
T TIGR00814 134 VAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLI--PHW-NG-ANLTTFPSFNGF--LKTLWLTIPVMVFSFN-HSPIIS 206 (397)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHc-CH-HHHhcCCcccch--HHHHHHHHHHHHHHHH-ccccch
Confidence 4466789999888876542111122222222222 221 11 1111 2322211 2334468889999996 888887
Q ss_pred eec-ccc
Q psy234 185 ALS-SYN 190 (445)
Q Consensus 185 ty~-Sy~ 190 (445)
++. +|.
T Consensus 207 sl~~~~~ 213 (397)
T TIGR00814 207 SFAISYR 213 (397)
T ss_pred HHHHHHH
Confidence 877 663
No 18
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=85.35 E-value=17 Score=37.33 Aligned_cols=125 Identities=23% Similarity=0.267 Sum_probs=64.6
Q ss_pred chhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCcccccccccCC
Q psy234 162 SKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGP 241 (445)
Q Consensus 162 ~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~~~~~~~~~G~ 241 (445)
.+....+.-=.++|.+ -...+-+...|.++|.+=.|.++.+...-.++-.+ +-.++++|-.. +++..+...+|.
T Consensus 183 ~~~~~~~lPv~~~Sf~-f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl--~w~~~~lg~l~---~~~~~~~~~~~~ 256 (394)
T PF03222_consen 183 WSYILPALPVLVFSFG-FHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYL--LWVFSILGSLP---REQFAEAIAQGG 256 (394)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC---HHHHHHHHhcCC
Confidence 3334467777788876 35666777788887766666666654332222211 12334444221 111212222232
Q ss_pred ceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCC
Q psy234 242 GLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR 294 (445)
Q Consensus 242 gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~ 294 (445)
+. ..+-+.+++...++....+.-+.-++|=.||-++.--...+.+.|.+++
T Consensus 257 ~~--~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 257 NV--SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred Ch--HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 1223344554444544444434444555677777777777788887754
No 19
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=85.09 E-value=34 Score=35.60 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=13.3
Q ss_pred hcccchhhHHHHhhhcCCCccCCce
Q psy234 276 STFGGLEAMITALCDEYPRLLGRHR 300 (445)
Q Consensus 276 S~i~~lE~iv~~l~d~~~~~~~~~r 300 (445)
.....+-+....+...+|+..+++|
T Consensus 311 ~~~~N~ys~~l~l~~l~~~~~~~~r 335 (442)
T TIGR00800 311 NISANSYSAGLDIAALLPKYIKIKR 335 (442)
T ss_pred HHHhhccchHHHHHHhCcCccccch
Confidence 4555555555556666665443444
No 20
>PRK00701 manganese transport protein MntH; Reviewed
Probab=84.75 E-value=37 Score=35.48 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcC
Q psy234 257 GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEY 292 (445)
Q Consensus 257 ~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~ 292 (445)
.|+.-..+|-+.++-+|++|.+..... -..+.|.+
T Consensus 304 ~G~~a~~lFaiGL~aag~sS~i~~~~a-~~~v~~~~ 338 (439)
T PRK00701 304 LGAAAATLFGIALLASGLSSTVVGTLA-GQIVMEGF 338 (439)
T ss_pred HhHHHHHHHHHHHHHhHhHHHhHHHHH-HHHHHHHH
Confidence 356666778888888999988763322 22344543
No 21
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=84.72 E-value=13 Score=38.07 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhcccchhhHHHHhhhcCC
Q psy234 262 SIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293 (445)
Q Consensus 262 ~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~ 293 (445)
..+.=...++|.+|++++++-.....+.|.+|
T Consensus 270 ~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 270 SFLLGLIITLACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444556667889999998888888888766
No 22
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=83.16 E-value=8.3 Score=40.04 Aligned_cols=55 Identities=15% Similarity=0.252 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhhhh
Q psy234 257 GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYIC 314 (445)
Q Consensus 257 ~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~l~ 314 (445)
.|+.-.+++=+.+++|-+|+.++++-.....++|.+| +.+-|+ .+.+.|++.++.
T Consensus 271 ~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kisY~~--~v~i~~i~S~~i 325 (427)
T PF05525_consen 271 FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-KISYKV--WVIIFTIFSFII 325 (427)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHH--HHHHHHHHHHHH
Confidence 4555666777788889999999999999999999887 233332 233444444443
No 23
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=80.05 E-value=44 Score=34.92 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=49.1
Q ss_pred HHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhccccccc-eee
Q psy234 108 SLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTL-LAL 186 (445)
Q Consensus 108 ~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~-ity 186 (445)
...-|.|...|.-+..+..-.++...+..+.+...+. ...+-.+.. .++-.|..|..-++=+ =+++|.. --|
T Consensus 144 ~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~---~~~~~~~~~---~~~~~fl~a~slv~g~-~~sw~~~~aDy 216 (442)
T COG1457 144 VTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGG---LDALWVKGP---TSPLSFLSALSLVIGS-FASWGPYAADY 216 (442)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cceeeccCC---CcchhHHHHHHHHHHH-HHhhhhhhhhh
Confidence 3344555555554443322233444444555543222 222222211 2344566666655533 3555655 347
Q ss_pred cccccCCCCcccchhhhhhHHHHHHH
Q psy234 187 SSYNKFDNNCYRDAILTSSINCLTSF 212 (445)
Q Consensus 187 ~Sy~~~~~n~~~~a~~v~~~~~~~si 212 (445)
+-|.|++.+ +|++..+......+-
T Consensus 217 sRy~~~~t~--~~~~~~~~~G~~l~~ 240 (442)
T COG1457 217 SRYAPSPTP--SKAFLAAVLGFFLGT 240 (442)
T ss_pred hhhcCCCch--HHHHHHHHHHHHHHH
Confidence 788888887 788877776665544
No 24
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=78.86 E-value=41 Score=35.08 Aligned_cols=164 Identities=17% Similarity=0.214 Sum_probs=83.0
Q ss_pred HHHHHhh--hccchhHHHHHhhHHH--HHHHHHHhhhcccCCcc-ccc-c-eeeecCcccccCchhHHHHHHhHhhhhcc
Q psy234 106 YFSLWKG--VRSAGKAVWVTALAPY--VVLIILLCRGVTLPGAD-EGI-R-YYLTPQWHKLKNSKVWIDAASQIFFSLGP 178 (445)
Q Consensus 106 ~~~v~kG--I~~~gKv~~~~~~~p~--vll~~l~ir~ltL~ga~-~Gl-~-~~f~pd~~~l~~~~vW~~A~~Q~ffSlsl 178 (445)
+++++++ +++.||+ +-|. +++.++.++++.-|-.. +.- + |--.|=.+-+.+..-=+||++-..|+.
T Consensus 135 ~l~l~p~klvd~iGK~-----LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~-- 207 (439)
T PRK15433 135 LVSLYPGKLLDTVGNF-----LAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI-- 207 (439)
T ss_pred HHHcChhhHHHHhHHH-----HHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH--
Confidence 4455555 6788888 4563 56677788888766321 100 0 111121122333322367777655543
Q ss_pred ccccceeecccc---cCCCCcccchhhhhhHHHHHHHHHHH---HHHHHHHhhhhccCcccccccccCCceehhhHHHHH
Q psy234 179 GFGTLLALSSYN---KFDNNCYRDAILTSSINCLTSFLAGF---VIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAI 252 (445)
Q Consensus 179 G~G~~ity~Sy~---~~~~n~~~~a~~v~~~~~~~silag~---~if~~~g~~~~~~~~~~~~~~~~G~gL~Fi~~P~~~ 252 (445)
++.-+=.. ++++++.|... ..+++|+. .|+.-++|.........++. .+|. .+|...
T Consensus 208 ----iii~~i~~~G~~~~~~~~k~t~-------~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~-~~g~-----~il~~~ 270 (439)
T PRK15433 208 ----VIVNAARSRGVTEARLLTRYTV-------WAGLMAGVGLTLLYLALFRLGSDSASLVDQS-ANGA-----AILHAY 270 (439)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccccCC-CcHh-----HHHHHH
Confidence 33222111 12222223222 22333332 34555555543322212211 1222 234444
Q ss_pred HhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCC
Q psy234 253 AMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293 (445)
Q Consensus 253 ~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~ 293 (445)
.+.-.|+.-..++=+.+++|-+|+.++++-.....++|.++
T Consensus 271 ~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~ 311 (439)
T PRK15433 271 VQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP 311 (439)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44445666667777778888899999999988888888764
No 25
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=78.84 E-value=17 Score=37.78 Aligned_cols=114 Identities=10% Similarity=0.118 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccc--cCchhHHHHHHhHh
Q psy234 96 LCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKL--KNSKVWIDAASQIF 173 (445)
Q Consensus 96 ~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l--~~~~vW~~A~~Q~f 173 (445)
.++.+.|+ ......+|+|..+|+.......-.+.++.+.+.+..-.+ .+. +.+||+.. .+...+..|+..++
T Consensus 124 ~~~~i~~~-~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~-~~~----~~~~~~~~~~~~~~~~~~a~~~~~ 197 (435)
T PRK10435 124 ACIAIVWV-FTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFD-AAT----YAANWNTSDTTDGHAIIKSILLCL 197 (435)
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHh----hcccccCCCCchHHHHHHHHHHHH
Confidence 44455564 344567899988887644332211111211211111000 011 22444321 22467888999999
Q ss_pred hhhccccccceeecccccC-CCCcccchhhhhhHHHHHHHHHHH
Q psy234 174 FSLGPGFGTLLALSSYNKF-DNNCYRDAILTSSINCLTSFLAGF 216 (445)
Q Consensus 174 fSlslG~G~~ity~Sy~~~-~~n~~~~a~~v~~~~~~~silag~ 216 (445)
|+. .|+....+++.-.|+ +.|++|.............++..+
T Consensus 198 faf-~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~ 240 (435)
T PRK10435 198 WAF-VGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQ 240 (435)
T ss_pred HHH-hhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHH
Confidence 999 888888777766654 457777766555444444444433
No 26
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=78.58 E-value=30 Score=35.80 Aligned_cols=169 Identities=19% Similarity=0.283 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHH-----H--HHHHHHhhhcccCCcccc-cceeeecCccc--ccCchhHH----HH
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPY-----V--VLIILLCRGVTLPGADEG-IRYYLTPQWHK--LKNSKVWI----DA 168 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~-----v--ll~~l~ir~ltL~ga~~G-l~~~f~pd~~~--l~~~~vW~----~A 168 (445)
+++.+.+..|+||.+|+.-. +.|+ + .+.++....=.+|++..- .+.-|+||--. .. ..... .-
T Consensus 148 ~l~~~vi~GGikrI~~v~~~--lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~-G~~i~~ai~~G 224 (416)
T PF01235_consen 148 ILVALVIFGGIKRIAKVSEK--LVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFA-GSTIMMAIRQG 224 (416)
T ss_pred HHHHHHHHcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHH-HHHHHHHHHHh
Confidence 45677889999999999655 4553 1 122333333334444221 22334444321 11 12332 33
Q ss_pred HHhHhhhhccccccceeecccccCCCCcccchh---hhhhHHHH-HHHHHHHHHHHHHHhhhhccCcccccccccCCcee
Q psy234 169 ASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAI---LTSSINCL-TSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLV 244 (445)
Q Consensus 169 ~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~---~v~~~~~~-~silag~~if~~~g~~~~~~~~~~~~~~~~G~gL~ 244 (445)
.....||--.|+|.--.-.|-.+.||.. |.++ +=++.|++ ++-+.|+++...=-+ .. +.+.+|..|.
T Consensus 225 v~Rg~fSNEAG~Gsa~~a~a~a~~~hP~-~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~---~~-----~~~~~g~~l~ 295 (416)
T PF01235_consen 225 VARGLFSNEAGLGSAPIAHAAAETDHPV-RQGLVQMFEVFIDTIIVCTITALVILVTGVW---SW-----GSGLEGAALT 295 (416)
T ss_pred hhhhhccCCCCCChhHHHHHHhcCCCcH-HHeeeeeehHhHHHHHHHHHHHHHhhccCCC---CC-----CCcchHHHHH
Confidence 3344799999999887666655555554 4443 33555654 344555554422101 00 1112344443
Q ss_pred hhhHHHHHHh-ccchhHHHHHHHHHHHHHhhhhcccch---hhHHHHhh
Q psy234 245 FIVYPEAIAM-MTGSVFWSIIFFLMLITLGLDSTFGGL---EAMITALC 289 (445)
Q Consensus 245 Fi~~P~~~~~-~p~~~~~~~lFFl~l~~agl~S~i~~l---E~iv~~l~ 289 (445)
- ++|++ +| ++-..+.-+++++.+.||.++.. |.....+.
T Consensus 296 ~----~Af~~~~g--~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 296 Q----AAFSTVLG--SWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred H----HHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 34443 33 22122334555666788888754 44444444
No 27
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=77.31 E-value=10 Score=40.23 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=32.7
Q ss_pred hhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhh
Q psy234 246 IVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALC 289 (445)
Q Consensus 246 i~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~ 289 (445)
.++-++++++|.+.+...++-+++++.=+||.=|..-++.+.-.
T Consensus 392 ~alf~~l~~lPl~~i~~~l~~il~~if~vTsaDS~t~vla~~ts 435 (504)
T PRK03356 392 RAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTC 435 (504)
T ss_pred hHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 44557889999999999999888887777777665555554444
No 28
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=76.88 E-value=1e+02 Score=32.29 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHH----hhHHHHHHHHH
Q psy234 96 LCVMAVFLLVYFSLWKGVRSAGKAVWVT----ALAPYVVLIIL 134 (445)
Q Consensus 96 ~~l~~~w~iv~~~v~kGI~~~gKv~~~~----~~~p~vll~~l 134 (445)
..+.+.|++. ..-.+|+|..+|+.... .++|.++++++
T Consensus 126 ~~l~~~~~~~-~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~ 167 (474)
T TIGR03813 126 SVLFVYWLAT-FIALRGVAAFTKVAKWGGIVGTIIPAAILVIL 167 (474)
T ss_pred HHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 34678999888886432 24555444443
No 29
>PRK09950 putative transporter; Provisional
Probab=75.25 E-value=8.7 Score=40.81 Aligned_cols=44 Identities=5% Similarity=0.034 Sum_probs=33.2
Q ss_pred hhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhh
Q psy234 246 IVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALC 289 (445)
Q Consensus 246 i~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~ 289 (445)
.++-+.++++|.+.+...++.+++++.=.||.=|..-++.+.-.
T Consensus 389 ~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts 432 (506)
T PRK09950 389 TAVQQLLSSLPAGKLFLAAYLGIMIIFLASHMDAVAYTMAATST 432 (506)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHc
Confidence 35557889999999999999888888777877776655554433
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=74.79 E-value=74 Score=32.49 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhccchhHHHHHhhHHH----HHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhc
Q psy234 102 FLLVYFSLWKGVRSAGKAVWVTALAPY----VVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLG 177 (445)
Q Consensus 102 w~iv~~~v~kGI~~~gKv~~~~~~~p~----vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSls 177 (445)
-.+......+|+|..+|+.......-. ++++++.+.....++.. ..+....+.+.+. .+.. ..++.-++|+.
T Consensus 126 ~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~- 201 (426)
T PF13520_consen 126 ILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFN-SLSFSLSTFFPSG-WPGF-LAGFSVAFFAF- 201 (426)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-----SHSCSSCSS-SSHH-HHHHHHHGGGG-
T ss_pred cccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccc-cccccccccCCcc-ccch-hhHHHHHHhhc-
Confidence 345566678899988888655443323 22222222222222221 1111111111111 1233 35666777777
Q ss_pred cccccceeecccccCCCCcccchhhh
Q psy234 178 PGFGTLLALSSYNKFDNNCYRDAILT 203 (445)
Q Consensus 178 lG~G~~ity~Sy~~~~~n~~~~a~~v 203 (445)
.|+.....++.=+|+ .|+.|.....
T Consensus 202 ~G~e~~~~~~~E~k~-k~ip~ai~~~ 226 (426)
T PF13520_consen 202 SGFEAIASLAEENKN-KTIPRAIIIS 226 (426)
T ss_dssp TTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred ccccccccccccccc-hhheeecccc
Confidence 677766666655554 3455543333
No 31
>TIGR00909 2A0306 amino acid transporter.
Probab=74.60 E-value=40 Score=34.66 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=52.5
Q ss_pred HHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhccccccc
Q psy234 104 LVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTL 183 (445)
Q Consensus 104 iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ 183 (445)
+......+|+|..+|+..+...+..+.++++.+-++...+. + .++|.++ .+...+..|...++|+.. |+-..
T Consensus 143 ~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~-~----~~~~~~~--~~~~~~~~~~~~~~~af~-G~e~~ 214 (429)
T TIGR00909 143 FLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFAS-N----NYTPFMP--MGFGGVGAATALVFFAFI-GFEAI 214 (429)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH-H----hcCCCCC--CcHHHHHHHHHHHHHHHh-hHHHH
Confidence 34445678999999988765544443332222222211111 1 1122111 123457888899999984 88777
Q ss_pred eeecccccC-CCCcccchhhhhhHHHHH
Q psy234 184 LALSSYNKF-DNNCYRDAILTSSINCLT 210 (445)
Q Consensus 184 ity~Sy~~~-~~n~~~~a~~v~~~~~~~ 210 (445)
..++.-.|+ ++|++|....-.......
T Consensus 215 ~~~~~E~~~p~r~ip~ai~~~~~~~~v~ 242 (429)
T TIGR00909 215 STAAEEVKNPERDIPKAIILSLIVVTLL 242 (429)
T ss_pred HhhHHhccCccccccHHHHHHHHHHHHH
Confidence 777766555 345566544433333333
No 32
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=73.76 E-value=78 Score=31.86 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=28.6
Q ss_pred ch-hHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCC
Q psy234 257 GS-VFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293 (445)
Q Consensus 257 ~~-~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~ 293 (445)
.| +.-..+|-+.++.++++|.+.....-...+.|-++
T Consensus 249 ~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 249 LGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred cCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 35 67778888899999999998887776666777654
No 33
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=73.28 E-value=1.2e+02 Score=31.63 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=18.9
Q ss_pred hHHHHHHhHhhhhccccccceeeccccc-CCCCcccchh
Q psy234 164 VWIDAASQIFFSLGPGFGTLLALSSYNK-FDNNCYRDAI 201 (445)
Q Consensus 164 vW~~A~~Q~ffSlslG~G~~ity~Sy~~-~~~n~~~~a~ 201 (445)
.+..++.++.|+. .|+-.....+.=.| .+.|++|...
T Consensus 218 ~~~~~~~~~~fsf-~G~e~~~~~a~E~knP~r~iP~Ai~ 255 (482)
T TIGR00907 218 AFLLGLLNPAWSM-TGYDGTAHMAEEIENPEVVGPRAII 255 (482)
T ss_pred hhhhhhhhhHHHh-cCcchhhHHHHhcCChhhhcCHHHH
Confidence 3555666777776 56555544443322 2334554433
No 34
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=73.24 E-value=39 Score=34.85 Aligned_cols=179 Identities=17% Similarity=0.246 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHhh---hccchhHHHHHhhHH--HHHHHHHHhhhcccCCcccc--cc-eeeecCcccccCchhH
Q psy234 94 LALCVMAVFLLVYFSLWKG---VRSAGKAVWVTALAP--YVVLIILLCRGVTLPGADEG--IR-YYLTPQWHKLKNSKVW 165 (445)
Q Consensus 94 l~~~l~~~w~iv~~~v~kG---I~~~gKv~~~~~~~p--~vll~~l~ir~ltL~ga~~G--l~-~~f~pd~~~l~~~~vW 165 (445)
+.+..++...+++....|- +++.||+ +-| ++++.++.++++.-|...-+ -+ |.-.|=.+-+.|..-=
T Consensus 120 l~ifs~ifF~ia~~~sl~psklid~vGk~-----LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~T 194 (431)
T COG1114 120 LFIFSVIFFAIAYLFSLNPSKLIDRVGKF-----LTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLT 194 (431)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHH
Confidence 4444444455555554443 6788998 455 46777888888776643222 12 2223333335555444
Q ss_pred HHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHH---HHHHHHHhhhhccCcccccccccCCc
Q psy234 166 IDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGF---VIFSVLGYMAHVQNKSVADVGLEGPG 242 (445)
Q Consensus 166 ~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~---~if~~~g~~~~~~~~~~~~~~~~G~g 242 (445)
+||++-..|+. ++.= +...+..+-.|+-.-- ....+++|++ .++-.++|+.........+.. +|-.
T Consensus 195 MDaLAal~Fgi------vIv~-alk~~g~~~~~~~~~~---~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~-nG~~ 263 (431)
T COG1114 195 MDALAALAFGI------VIVN-ALKSKGVTTKKQIIKY---TIKAGLIAAILLALIYLSLFYLGATSASAAGLAA-NGGQ 263 (431)
T ss_pred HHHHHHHHHHH------HHHH-HHHHhccCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccchHhhccccc-chHH
Confidence 78877666543 3322 2222221111211111 1112233332 244445554321111011111 1211
Q ss_pred eehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCC
Q psy234 243 LVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293 (445)
Q Consensus 243 L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~ 293 (445)
.+.++-++. .|+.=..+.=+++++|.+|+.++++-.+...+.+..|
T Consensus 264 ----IL~~~s~~~-fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 264 ----ILSAYSQHL-FGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred ----HHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122222221 2232233344556678899999999888888888887
No 35
>PRK09928 choline transport protein BetT; Provisional
Probab=72.15 E-value=22 Score=39.02 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=31.5
Q ss_pred hhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHH
Q psy234 246 IVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMIT 286 (445)
Q Consensus 246 i~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~ 286 (445)
.++-+.++++|.+.+.+.++.+++++.=.||.=|..-++.+
T Consensus 396 ~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS~s~Vla~ 436 (679)
T PRK09928 396 RGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGN 436 (679)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 45667889999999999998888887777777665554443
No 36
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=71.80 E-value=51 Score=34.57 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=52.6
Q ss_pred HHHHHHhhhccchhHHHHHhhH---HHHHHHHHHhhhcccCCcccccceeee----cCcccccCchhHHHHHHhHhhhhc
Q psy234 105 VYFSLWKGVRSAGKAVWVTALA---PYVVLIILLCRGVTLPGADEGIRYYLT----PQWHKLKNSKVWIDAASQIFFSLG 177 (445)
Q Consensus 105 v~~~v~kGI~~~gKv~~~~~~~---p~vll~~l~ir~ltL~ga~~Gl~~~f~----pd~~~l~~~~vW~~A~~Q~ffSls 177 (445)
......+|+|..+|+....... |.++++++..... .+. .....+. |+++. +...+..++..++|+.
T Consensus 140 ~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~--~~~--~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~af- 212 (473)
T TIGR00905 140 FTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWF--KLD--LFTADFWGHDVPSLGS--VFSQVKNTMLVTLWVF- 212 (473)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--Cch--hcccccCccCCCcccc--hHHHHHHHHHHHHHHH-
Confidence 4456678999988887654422 3322222222111 111 1111111 22211 2345677888899998
Q ss_pred cccccceeecccccCCCCcccchhhhhhHHHHH
Q psy234 178 PGFGTLLALSSYNKFDNNCYRDAILTSSINCLT 210 (445)
Q Consensus 178 lG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~ 210 (445)
.|+=....++.-.|+++|++|....-.......
T Consensus 213 ~G~e~~~~~a~E~k~~r~iPrai~~~~~i~~~~ 245 (473)
T TIGR00905 213 IGIEGAVVSSGRAKNKSDVGKATVLGTLGALVI 245 (473)
T ss_pred HhHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 477777777766666667777655544433333
No 37
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=71.17 E-value=3.2 Score=43.80 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=68.2
Q ss_pred HHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhhhhccccccccchhHhHhh-
Q psy234 252 IAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFL- 330 (445)
Q Consensus 252 ~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~- 330 (445)
+++...+---+..|.+.-+-.|++-.++.+|..-.--.|+.-+.+.|....+..+.....-..|++.-.|.|.+|=++.
T Consensus 7 LaR~QFA~T~~fH~lFvpltiGL~~~lai~E~~~~rtg~~~y~~larFw~Klf~InFavGVvTGivmeFqFG~nWs~ys~ 86 (514)
T PRK15035 7 LSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSN 86 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcchHHHHH
Confidence 3343333334566777777889999999999876655554211111111122233333444566766667787764433
Q ss_pred ---hhhhhhHHH--HHHHHHHHhhee-eeeCccchHHHHH
Q psy234 331 ---NVFGPGLAI--LFVVFVEAAGVC-WIYGVDRFSTDIE 364 (445)
Q Consensus 331 ---~~~~~~~~l--~~~~~~e~i~v~-w~yg~~~~~~di~ 364 (445)
|.+++..++ ++.-|.|...++ |+||.||+.+-.+
T Consensus 87 ~vGdvfG~pLa~E~l~AFFlEstFlGl~lFGw~rl~~~~H 126 (514)
T PRK15035 87 YVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQH 126 (514)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH
Confidence 555554444 457788987776 8999999876655
No 38
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=70.11 E-value=41 Score=35.26 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhh----cccCCcccc--------cceeeecCcccc--cCchhHHH
Q psy234 102 FLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRG----VTLPGADEG--------IRYYLTPQWHKL--KNSKVWID 167 (445)
Q Consensus 102 w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~----ltL~ga~~G--------l~~~f~pd~~~l--~~~~vW~~ 167 (445)
++++......|+|..+|+.......-.+.++.+.+-+ ..-++..++ .+..+.|++++- .+......
T Consensus 125 ~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (478)
T PF00324_consen 125 ILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFA 204 (478)
T ss_pred hhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHH
Confidence 3444556678899999975553333333333222222 122222222 112333332211 12345678
Q ss_pred HHHhHhhhhccccccceeecccccC-CCCcccchhhhhhH
Q psy234 168 AASQIFFSLGPGFGTLLALSSYNKF-DNNCYRDAILTSSI 206 (445)
Q Consensus 168 A~~Q~ffSlslG~G~~ity~Sy~~~-~~n~~~~a~~v~~~ 206 (445)
|+..++++. .|+.....++.=.|+ ++|++|........
T Consensus 205 ~~~~~~~af-~G~e~~a~~a~E~k~P~k~IPra~~~~~~~ 243 (478)
T PF00324_consen 205 ALVFAFFAF-VGFESIAILAEEAKNPRKTIPRATLLSVLR 243 (478)
T ss_pred hhhhhhccc-ccccccccccccCCCchhhhhhHhhhhhhh
Confidence 999999999 488877777644433 34555655444333
No 39
>PRK10483 tryptophan permease; Provisional
Probab=69.41 E-value=50 Score=34.27 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=26.0
Q ss_pred HHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCC
Q psy234 250 EAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR 294 (445)
Q Consensus 250 ~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~ 294 (445)
+.+++...++..+.+.=+.-++|=.||-++.-....+.+.|.+++
T Consensus 271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~ 315 (414)
T PRK10483 271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF 315 (414)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444443334444333222233445678888888888888998753
No 40
>PRK09664 tryptophan permease TnaB; Provisional
Probab=68.47 E-value=49 Score=34.33 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=26.1
Q ss_pred HHHHHhHhhhhccccccceeecccccCCCCcccchhhhh
Q psy234 166 IDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTS 204 (445)
Q Consensus 166 ~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~ 204 (445)
..|.-=.++|.|- .+.+-+..+|.++|.+-.|+++++.
T Consensus 196 ~~alPVl~~SFgf-h~iIPsl~~y~~~d~~~~~kaIl~G 233 (415)
T PRK09664 196 FMALPVCLASFGF-HGNIPSLIICYGKRKDKLIKSVVFG 233 (415)
T ss_pred HHHHHHHHHhhhC-CCcchHHHHHhCccHHHHHHHHHHH
Confidence 3466666777766 6778888888776655566666654
No 41
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=67.76 E-value=4.5 Score=42.77 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred HHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhhhhccccccccchhHhHhh-
Q psy234 252 IAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFL- 330 (445)
Q Consensus 252 ~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~- 330 (445)
++++..+---+..|++.-+-.|++..++.+|..-.--.|+.-+.+.|....+..+.....-..|+..-.|.|.+|=++.
T Consensus 7 LsR~QFA~T~~fH~lFvpltiGL~~llai~E~~~~rtg~~~y~~larFW~Klf~InFavGVvTGivmeFqFG~nWs~ys~ 86 (522)
T PRK15097 7 LSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSH 86 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchheeecccccHHHHH
Confidence 3443334445566777778889999999999876444443211111111122233333445567777677787664433
Q ss_pred ---hhhhhhHHH--HHHHHHHHhhee-eeeCccchHHHHHh
Q psy234 331 ---NVFGPGLAI--LFVVFVEAAGVC-WIYGVDRFSTDIES 365 (445)
Q Consensus 331 ---~~~~~~~~l--~~~~~~e~i~v~-w~yg~~~~~~di~~ 365 (445)
|.+++..++ ++.-|.|...++ |+||.||+.+..+.
T Consensus 87 ~vGdifG~pLa~E~l~AFFlEstFlGl~~FGW~rl~~~~H~ 127 (522)
T PRK15097 87 YVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHM 127 (522)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Confidence 555554443 557788887776 89999998766553
No 42
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=66.73 E-value=54 Score=34.29 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=24.7
Q ss_pred hHHHHHHhHhhhhccccccceeecccccCCCCcccchh
Q psy234 164 VWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAI 201 (445)
Q Consensus 164 vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~ 201 (445)
.+..++..++|+. .|+-....++...|++.|++|...
T Consensus 196 ~~~~~~~~~~~~f-~G~e~~~~~a~e~k~~k~ip~ai~ 232 (468)
T TIGR03810 196 QVKNMMLVTVWVF-IGIEGASMLSARAEKRSDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHHH-HhHhHHhhhHhhccCcccchHHHH
Confidence 3456777888888 577776667766666666666543
No 43
>PRK11387 S-methylmethionine transporter; Provisional
Probab=66.42 E-value=1.7e+02 Score=30.54 Aligned_cols=38 Identities=5% Similarity=-0.101 Sum_probs=23.1
Q ss_pred hHHHHHHhHhhhhccccccceeeccccc-CCCCcccchhh
Q psy234 164 VWIDAASQIFFSLGPGFGTLLALSSYNK-FDNNCYRDAIL 202 (445)
Q Consensus 164 vW~~A~~Q~ffSlslG~G~~ity~Sy~~-~~~n~~~~a~~ 202 (445)
.+..++..++|+. .|+......+.=.| .+.|++|....
T Consensus 207 ~~~~~~~~~~faf-~G~e~~~~~a~E~knP~r~iPrAi~~ 245 (471)
T PRK11387 207 PILMTMVAVNFAF-SGTELIGIAAGETENPAKVIPVAIRT 245 (471)
T ss_pred HHHHHHHHHHHHH-cCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 4667777788887 57776666664433 23456665443
No 44
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=66.20 E-value=5.5 Score=41.46 Aligned_cols=113 Identities=21% Similarity=0.317 Sum_probs=65.3
Q ss_pred HHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhhhhccccccccchhHhHh--
Q psy234 252 IAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNF-- 329 (445)
Q Consensus 252 ~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~-- 329 (445)
++++..+---+..|.+.-+-.|++.+++.+|..-.--.|+.-+.+.|+..++..+...+.-..|+.+..|-|.+|=++
T Consensus 7 lsR~qFa~t~~fHilFv~lTiGl~~~lai~e~~~~~t~d~~y~~~tkfw~kvf~InFa~GvvTGivm~fqfg~nW~~fs~ 86 (457)
T COG1271 7 LSRLQFALTALFHILFVPLTIGLAFMLAIMETLYVKTKDEIYKRMTKFWGKVFAINFAVGVVTGIVMEFQFGTNWPGFSE 86 (457)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccHHHHH
Confidence 344443433445566666778999999999987766666532112222222222223333445666666667655333
Q ss_pred -h-hhhhhhHHH--HHHHHHHHhhee-eeeCccchHHHHH
Q psy234 330 -L-NVFGPGLAI--LFVVFVEAAGVC-WIYGVDRFSTDIE 364 (445)
Q Consensus 330 -~-~~~~~~~~l--~~~~~~e~i~v~-w~yg~~~~~~di~ 364 (445)
. |...+...+ +++-+.|...++ |+||.||+.+-.+
T Consensus 87 ~vG~V~g~PLa~E~l~AFFlEa~FLGi~lfgwdrv~~~~H 126 (457)
T COG1271 87 YVGDVFGAPLAIEALFAFFLEATFLGIFLFGWDRVSKKLH 126 (457)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhheeeeccccCchhH
Confidence 2 444443333 677888987766 8999999875544
No 45
>PRK11021 putative transporter; Provisional
Probab=58.30 E-value=1.8e+02 Score=29.70 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhccccccc
Q psy234 104 LVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTL 183 (445)
Q Consensus 104 iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ 183 (445)
+......+|+|..+|+.......-..++..+...+ + .+.-++-+ ++.++ .+...+..++..++|+. .|+-..
T Consensus 125 ~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~~~----~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~af-~G~e~~ 196 (410)
T PRK11021 125 LLWLLNLRGASSSANLQTVIALLIVALVVAIWWAG----D-IKPADIPF-PAPGS-IEWSGLFAALGVMFWCF-VGIEAF 196 (410)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc----C-CchhcCCC-CCCCC-ccHHHHHHHHHHHHHHH-hcHHHH
Confidence 34456678999999887654321111111111111 1 11111111 11111 12345678888889988 688777
Q ss_pred eeecccccC-CCCcccchhhhhhHHHHHHHH
Q psy234 184 LALSSYNKF-DNNCYRDAILTSSINCLTSFL 213 (445)
Q Consensus 184 ity~Sy~~~-~~n~~~~a~~v~~~~~~~sil 213 (445)
..++.=.|+ ++|++|.............++
T Consensus 197 ~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil 227 (410)
T PRK11021 197 AHLASEFKNPERDFPRALMIGLLLAGLVYWA 227 (410)
T ss_pred HhhHHhccCccccccHHHHHHHHHHHHHHHH
Confidence 777765554 567777655544434333333
No 46
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=58.16 E-value=13 Score=39.44 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHhccchhHHHHHHHHHHHHHhhhhcccchhhH
Q psy234 250 EAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAM 284 (445)
Q Consensus 250 ~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~i 284 (445)
+++++.|.+.+.+.++.+..+...+||.=+..-.+
T Consensus 396 ~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl 430 (537)
T COG1292 396 QVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVL 430 (537)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 67789999999999999999988888887654433
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=57.57 E-value=2.5e+02 Score=29.40 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccC--chhHHHHHHhHhhhhcccc
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKN--SKVWIDAASQIFFSLGPGF 180 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~--~~vW~~A~~Q~ffSlslG~ 180 (445)
++......+|+|..+|+.......=.+.++++.+-.+... ..+-++.++.+++...+ ...|..+...++|+. .|+
T Consensus 153 ~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~ 229 (475)
T TIGR03428 153 VLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA--QRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVM-VGF 229 (475)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceeeecCCCCCCccHHHHHHHHHHHHHHHh-cCc
Confidence 3455566788888888754432221111111111111111 12223344333221111 234666666777777 677
Q ss_pred ccceeeccccc-CCCCcccchhhh
Q psy234 181 GTLLALSSYNK-FDNNCYRDAILT 203 (445)
Q Consensus 181 G~~ity~Sy~~-~~~n~~~~a~~v 203 (445)
-....++.=.| .+.|++|.-...
T Consensus 230 e~~~~~aeE~knP~r~iPrai~~s 253 (475)
T TIGR03428 230 GSAGELSEETKNPRRVAPRTILTA 253 (475)
T ss_pred chHHHHHHHhcCcchhhhHHHHHH
Confidence 66655554332 344555554433
No 48
>PRK10746 putative transport protein YifK; Provisional
Probab=53.93 E-value=2.8e+02 Score=28.94 Aligned_cols=39 Identities=13% Similarity=-0.039 Sum_probs=23.3
Q ss_pred chhHHHHHHhHhhhhccccccceeeccccc-CCCCcccchh
Q psy234 162 SKVWIDAASQIFFSLGPGFGTLLALSSYNK-FDNNCYRDAI 201 (445)
Q Consensus 162 ~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~-~~~n~~~~a~ 201 (445)
.+.+..|+.+++|+. .|+-.....+.=.| .+.|++|...
T Consensus 199 ~~g~~~~~~~~~faf-~G~e~v~~~a~E~knP~k~iP~Ai~ 238 (461)
T PRK10746 199 WKGFLTALCIVVASY-QGVELIGITAGEAKNPQVTLRSAVG 238 (461)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHhcChhhHHHHHHH
Confidence 345678999999998 56666544443322 2345555433
No 49
>PRK10238 aromatic amino acid transporter; Provisional
Probab=53.53 E-value=2.8e+02 Score=28.83 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhccchhHHHHHh
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTA 124 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~ 124 (445)
++......+|+|..+|+.....
T Consensus 135 ~~~~~lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 135 VVINAINLTNVKVFGEMEFWFA 156 (456)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4555566778888888765443
No 50
>PRK10655 potE putrescine transporter; Provisional
Probab=53.23 E-value=73 Score=32.89 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=51.1
Q ss_pred HHHHHHhhhccchhHHHHHhh---HHHHHHHHHHhhhcccCCcccccceeeecCccc--ccCchhHHHHHHhHhhhhccc
Q psy234 105 VYFSLWKGVRSAGKAVWVTAL---APYVVLIILLCRGVTLPGADEGIRYYLTPQWHK--LKNSKVWIDAASQIFFSLGPG 179 (445)
Q Consensus 105 v~~~v~kGI~~~gKv~~~~~~---~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~--l~~~~vW~~A~~Q~ffSlslG 179 (445)
......+|+|..+|+..+... .|.+++.++...... ++ .+.|+|+. ......+..++..++|+. .|
T Consensus 134 ~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~af-~G 204 (438)
T PRK10655 134 CTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFS-PS-------LYVAAWNPHHLPFFSAVGSSIAMTLWAF-LG 204 (438)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc-------cccCCcCccCCchHHHHHHHHHHHHHHH-hh
Confidence 334557799988887654332 233322222211111 11 12334421 111234566677788888 78
Q ss_pred cccceeecccccC-CCCcccchhhhhhHHHHHH
Q psy234 180 FGTLLALSSYNKF-DNNCYRDAILTSSINCLTS 211 (445)
Q Consensus 180 ~G~~ity~Sy~~~-~~n~~~~a~~v~~~~~~~s 211 (445)
+.....++.-.|+ +.|++|............-
T Consensus 205 ~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y 237 (438)
T PRK10655 205 LESACANSDAVENPERNVPIAVLGGTLGAAVIY 237 (438)
T ss_pred hhhhhhhHHHhhCccccccHHHHHHHHHHHHHH
Confidence 8887777766554 4577776554444443333
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=48.56 E-value=3.6e+02 Score=28.61 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHH
Q psy234 96 LCVMAVFLLVYFSLWKGVRSAGKAVWV 122 (445)
Q Consensus 96 ~~l~~~w~iv~~~v~kGI~~~gKv~~~ 122 (445)
..+.+.|+... .-.+|+|..+|+...
T Consensus 126 ~~l~i~~~~t~-~n~~G~k~~~~i~~i 151 (507)
T TIGR00910 126 AALIIFWALAF-SQFGGTKRTAKIAKA 151 (507)
T ss_pred HHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 34445565554 347788888776543
No 52
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=48.23 E-value=3.4e+02 Score=28.22 Aligned_cols=50 Identities=22% Similarity=0.608 Sum_probs=30.2
Q ss_pred eehHHHHHHHHHHHhhcccccccCCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy234 381 YISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYK 434 (445)
Q Consensus 381 ~v~Pi~l~~i~~~~~~~~~~~~~~~~~yp~w~~~~gw~~~~~~~l~ip~~~i~~ 434 (445)
..+|+.+...+.... ++...+++..|.|...++|.+.+. +....++.++.
T Consensus 361 ~~lP~~~~~ll~~~~---~k~~mg~~~~~~~~~~~~~~v~~~-i~~L~i~li~~ 410 (416)
T COG1914 361 VILPFALIPLLLLTS---DKKLMGDYKNPRWLTVLGWIVVIL-IVALNIILLVG 410 (416)
T ss_pred HHHHHHHHHHHHHHc---ChhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 356777666555422 112224678899999999998765 44445555544
No 53
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=48.20 E-value=3.3e+02 Score=28.09 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcc-cCCcccccceeeecCccc--ccCchhHHHHHHhHhhhhcccccc
Q psy234 106 YFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVT-LPGADEGIRYYLTPQWHK--LKNSKVWIDAASQIFFSLGPGFGT 182 (445)
Q Consensus 106 ~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~lt-L~ga~~Gl~~~f~pd~~~--l~~~~vW~~A~~Q~ffSlslG~G~ 182 (445)
.....+|+|..+|+..+....-++.++++.+.+.. .++ + .+.++|+. ..+...+..|+..++|+. .|+..
T Consensus 137 ~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~af-~G~e~ 209 (445)
T PRK10644 137 VLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG--E----TYMAAWNVSGLGTFGAIQSTLNVTLWSF-IGVES 209 (445)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--h----hccCCccccccchHHHHHHHHHHHHHHH-HhHHH
Confidence 34456789988888665443333222222222211 111 0 12233321 112345667888889988 67777
Q ss_pred ceeecccccC-CCCcccchhhhhhHHHHHHHHH
Q psy234 183 LLALSSYNKF-DNNCYRDAILTSSINCLTSFLA 214 (445)
Q Consensus 183 ~ity~Sy~~~-~~n~~~~a~~v~~~~~~~sila 214 (445)
...++.-.|+ ++|++|.............++.
T Consensus 210 ~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~ 242 (445)
T PRK10644 210 ASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLS 242 (445)
T ss_pred HHHHHHHhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 7777765543 4567776555544444444443
No 54
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=47.74 E-value=3.2e+02 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=14.1
Q ss_pred HHHHHHhhhhcccchhhHHHHhhhcCCC
Q psy234 267 LMLITLGLDSTFGGLEAMITALCDEYPR 294 (445)
Q Consensus 267 l~l~~agl~S~i~~lE~iv~~l~d~~~~ 294 (445)
+.+.++.+++....+.+....+..-+|+
T Consensus 251 ~~~~l~~~~~n~~N~ys~~l~l~~l~~~ 278 (386)
T TIGR02358 251 LIILLSTVTTTFMDIYSAAISTGNLLPR 278 (386)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555444555555554
No 55
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=44.84 E-value=3.7e+02 Score=27.74 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=38.3
Q ss_pred chhHHHHHHhHhhhhccccccceeecccccCCCC--cccchhhhhhHHHHHHHHHHHHHHHHHH
Q psy234 162 SKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNN--CYRDAILTSSINCLTSFLAGFVIFSVLG 223 (445)
Q Consensus 162 ~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n--~~~~a~~v~~~~~~~silag~~if~~~g 223 (445)
...|..+..=.+||.+ +.+.+.+...|.+++.. ..|..........+.-+.-++.+|+.++
T Consensus 192 ~~~~~~~ipv~vfsF~-~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~ 254 (415)
T COG0814 192 WKYLLLAIPVFVFSFG-FHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG 254 (415)
T ss_pred HHHHHHHhhHHHhhhh-CCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556678888888885 47788888888776655 4444444444444444555555555554
No 56
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=43.58 E-value=3.9e+02 Score=27.59 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=16.7
Q ss_pred HHhhhhcccchhhHHHHhhhcCC
Q psy234 271 TLGLDSTFGGLEAMITALCDEYP 293 (445)
Q Consensus 271 ~agl~S~i~~lE~iv~~l~d~~~ 293 (445)
+|=.||-++.-....+.+.|.++
T Consensus 281 ~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 281 LALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34557777777777788888764
No 57
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=39.51 E-value=4.3e+02 Score=26.97 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhcccccc
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~ 182 (445)
.+......+|+|..+|+.......=++.++++.+-++...+... .+ .+.+..+.-........+..-++|+. .|++.
T Consensus 143 ~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~ 219 (466)
T COG0531 143 ALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPFNPGGGSFGGILAAILLAFFAF-TGFEA 219 (466)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCcccccchHHHHHHHHHHHHHHh-hcHHH
Confidence 34455668899888887665544434333333333332222211 11 11111111111224556666667777 77877
Q ss_pred ceeecccccC-CCCcccchh
Q psy234 183 LLALSSYNKF-DNNCYRDAI 201 (445)
Q Consensus 183 ~ity~Sy~~~-~~n~~~~a~ 201 (445)
...++.=.|+ ++|++|..+
T Consensus 220 ~~~~a~E~knp~r~ip~aii 239 (466)
T COG0531 220 IATLAEEVKNPKRTIPRAII 239 (466)
T ss_pred HHHHHHHhcCccccccHHHH
Confidence 7777643333 344444433
No 58
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=36.16 E-value=5.2e+02 Score=26.91 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=22.1
Q ss_pred hHHHHHHhHhhhhccccccceeeccccc-CCCCcccch
Q psy234 164 VWIDAASQIFFSLGPGFGTLLALSSYNK-FDNNCYRDA 200 (445)
Q Consensus 164 vW~~A~~Q~ffSlslG~G~~ity~Sy~~-~~~n~~~~a 200 (445)
.+..|+..++|+. .|+-...+++.=.| .+.|++|..
T Consensus 212 ~~~~~~~~~~~af-~G~e~~~~~a~E~knP~r~iPrai 248 (469)
T PRK11049 212 GFFAGFQIAVFAF-VGIELVGTTAAETKDPEKSLPRAI 248 (469)
T ss_pred HHHHHHHHHHHHH-hcHHHHHHHHHHhcCHhhHHHHHH
Confidence 4678899999998 47766655553222 234555544
No 59
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=31.95 E-value=5.2e+02 Score=26.57 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=27.8
Q ss_pred hhHHHHHHhHhhhhccccccceeecccccC-CCCcccchhhhhhHHHHH
Q psy234 163 KVWIDAASQIFFSLGPGFGTLLALSSYNKF-DNNCYRDAILTSSINCLT 210 (445)
Q Consensus 163 ~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~-~~n~~~~a~~v~~~~~~~ 210 (445)
..+..++..++|+. .|+-....++.=.|+ ++|++|.-..........
T Consensus 195 ~~~~~~~~~~~~af-~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~ 242 (445)
T PRK11357 195 MALLAGISATSWSY-TGMASICYMTGEIKNPGKTMPRALIGSCLLVLVL 242 (445)
T ss_pred HHHHHHHHHHHHHH-hhHHHHHhhHHHhcCccccchHHHHHHHHHHHHH
Confidence 45667888888988 477666666644333 446666544444333333
No 60
>PRK15049 L-asparagine permease; Provisional
Probab=31.01 E-value=6.6e+02 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=16.1
Q ss_pred HHHHHHHhhhccchhHHHHHhhHH
Q psy234 104 LVYFSLWKGVRSAGKAVWVTALAP 127 (445)
Q Consensus 104 iv~~~v~kGI~~~gKv~~~~~~~p 127 (445)
+....-.+|+|..+|+......+.
T Consensus 154 l~~~iN~~gvk~~~~i~~~~~~ik 177 (499)
T PRK15049 154 IVGTMNMIGVKWFAEMEFWFALIK 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788998888876654433
No 61
>PRK10836 lysine transporter; Provisional
Probab=27.83 E-value=7.2e+02 Score=26.00 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=9.1
Q ss_pred HHHHHHhhhhhcCC
Q psy234 426 CIPSYIVYKLYTTP 439 (445)
Q Consensus 426 ~ip~~~i~~~~~~~ 439 (445)
.+.++..||++|.+
T Consensus 460 ~~~~~~~~~~~~~~ 473 (489)
T PRK10836 460 FLIIWFGYKLIKGT 473 (489)
T ss_pred HHHHHHHHHheecC
Confidence 34566778888654
No 62
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=25.19 E-value=2.4e+02 Score=29.50 Aligned_cols=174 Identities=19% Similarity=0.264 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHH-----H--HHHHHHhhhcccCCccccc-ceeeecCccc--ccC---chhHHHHH
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPY-----V--VLIILLCRGVTLPGADEGI-RYYLTPQWHK--LKN---SKVWIDAA 169 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~-----v--ll~~l~ir~ltL~ga~~Gl-~~~f~pd~~~--l~~---~~vW~~A~ 169 (445)
+++...+.+|+||.+|+.-. .+|+ + .+.+++...=.+|.+.+-+ +.=|.|+-.. ... .+.-+.-.
T Consensus 192 ~l~~~VI~GGi~rIa~v~~~--vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv 269 (452)
T COG1115 192 LLVALVIFGGIKRIAKVSSK--VVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGV 269 (452)
T ss_pred HHHHHHHHcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHH
Confidence 56778889999999999755 4453 2 2233344334455543221 1122222110 111 12333334
Q ss_pred HhHhhhhccccccceeecccccCCCCcccchhhhhhHHHH-HHHHHHHHHHHHHHhhhhccCcccccccccCCceehhhH
Q psy234 170 SQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCL-TSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVY 248 (445)
Q Consensus 170 ~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~-~silag~~if~~~g~~~~~~~~~~~~~~~~G~gL~Fi~~ 248 (445)
.-..||-=.|+|.--.-++-.+.+|+ .|++++-.+.... +-+.+...-+.++-......+.. .+|..|.--++
T Consensus 270 ~RGlfSNEAGmGsap~aaAaA~~~hP-v~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~-----~~G~~ltq~A~ 343 (452)
T COG1115 270 KRGLFSNEAGMGSAPIAAAAAKTDHP-VKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGG-----LSGAALTQAAF 343 (452)
T ss_pred HHHhhcccccCCcchhHHHhhcCCCc-HHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCC-----CchHHHHHHHH
Confidence 44579998999887666655555544 4555443322222 11222222233332211111110 25666665555
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhhhcccch---hhHHHHhh
Q psy234 249 PEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGL---EAMITALC 289 (445)
Q Consensus 249 P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~l---E~iv~~l~ 289 (445)
.+.+... ++.+.+ +.+++.+.||.++-. |..+..+.
T Consensus 344 ~~~~g~~-G~~fv~----i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 344 SSHLGSW-GSYFVA----IALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHhcCcc-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443321 122222 334455778887743 44444443
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=25.08 E-value=7.5e+02 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.018 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhcccchhhHHHHhhhcC
Q psy234 265 FFLMLITLGLDSTFGGLEAMITALCDEY 292 (445)
Q Consensus 265 FFl~l~~agl~S~i~~lE~iv~~l~d~~ 292 (445)
.++.+.+...++....+......+.|-.
T Consensus 260 ~l~~~~l~~~t~n~~~~ys~~l~~~~l~ 287 (404)
T PRK11017 260 AIVMLGLNIWTTNDNALYASGLGFCNIT 287 (404)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4444555555555555544455666654
No 64
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=24.34 E-value=8.2e+02 Score=25.47 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHHHHH--HHHHh---hhcccCCcccc-cceeeecCccc--ccCc----hhHHHHHH
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPYVVL--IILLC---RGVTLPGADEG-IRYYLTPQWHK--LKNS----KVWIDAAS 170 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~vll--~~l~i---r~ltL~ga~~G-l~~~f~pd~~~--l~~~----~vW~~A~~ 170 (445)
++++..+.+|+|+.+|+.-..+++..++. ..+.+ +.-.+|.+.+- .+.-|+||--. .. . +.-+.-..
T Consensus 175 ~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~-G~~v~~ai~~Gv~ 253 (425)
T TIGR00835 175 VLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFA-GSTVAQAIMIGVK 253 (425)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHHhhH
Confidence 45566788999999999765443332211 11222 22233433221 22233333110 00 1 11222334
Q ss_pred hHhhhhccccccceeecccccCCCCcccchhh---hhhHHHH-HHHHHHHHHH
Q psy234 171 QIFFSLGPGFGTLLALSSYNKFDNNCYRDAIL---TSSINCL-TSFLAGFVIF 219 (445)
Q Consensus 171 Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~---v~~~~~~-~silag~~if 219 (445)
-..||--.|.|.--.-.+-.+.+|+. |.+++ =++.|++ ++-+.++++.
T Consensus 254 Rg~fSNEAG~Gsa~~a~a~a~~~hP~-~QGl~~~~~vfiDTivvCt~Talvil 305 (425)
T TIGR00835 254 RGLFSNEAGMGSAPIAAAAAQVSHPV-RQGLVQMLGVFIDTMIVCTATALVIL 305 (425)
T ss_pred HHHhccccccCcHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999876655555555544 44433 3455554 3445555544
No 65
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=23.23 E-value=44 Score=25.02 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhhcCC
Q psy234 420 TASSLMCIPSYIVYKLYTTP 439 (445)
Q Consensus 420 ~~~~~l~ip~~~i~~~~~~~ 439 (445)
-++.++.+|.+..||+||++
T Consensus 54 ylLvlIiVPAvi~Yk~yk~e 73 (73)
T PF06281_consen 54 YLLVLIIVPAVIAYKIYKSE 73 (73)
T ss_pred HHHHHHHhhhheeeeeeecC
Confidence 34556778999999999874
No 66
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=22.64 E-value=9e+02 Score=25.32 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=27.5
Q ss_pred hhHHHHHHhHhhhhccccccceeeccccc-CCCCcccchhhhhhHHH
Q psy234 163 KVWIDAASQIFFSLGPGFGTLLALSSYNK-FDNNCYRDAILTSSINC 208 (445)
Q Consensus 163 ~vW~~A~~Q~ffSlslG~G~~ity~Sy~~-~~~n~~~~a~~v~~~~~ 208 (445)
..+..++..++|+. .|+-.....+.=.| .++|++|..........
T Consensus 211 ~~~~~~~~~~~~~f-~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~ 256 (496)
T PRK15238 211 IAVLSFVVFAIFAY-GGIEAVGGLVDKTENPEKNFPKGIIIAAIVIS 256 (496)
T ss_pred hHHHHHHHHHHHHH-HhHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 45667778888888 47766666554443 35567776555444333
No 67
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=20.19 E-value=4.4e+02 Score=27.49 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.8
Q ss_pred hHHHHHHh-ccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhh
Q psy234 247 VYPEAIAM-MTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALC 289 (445)
Q Consensus 247 ~~P~~~~~-~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~ 289 (445)
++|....+ +| +....++...++-+.++|.-+.+....+.+.
T Consensus 306 ~~p~~~~~~lp--~~~~gl~~a~llaA~mST~~s~l~~~ss~~~ 347 (471)
T TIGR02119 306 VIPLLAIKVLP--PILAGIFLAAPMAAIMSTVNSLLLQSSSTII 347 (471)
T ss_pred hHHHHHHHHch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665543 44 5567888888888889998888887777663
Done!