Query psy234
Match_columns 445
No_of_seqs 194 out of 1528
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 3.8E-83 1.3E-87 666.2 19.8 396 1-425 90-495 (519)
2 3l1l_A Arginine/agmatine antip 95.0 1.1 3.9E-05 44.5 18.4 106 103-214 134-242 (445)
3 4djk_A Probable glutamate/gamm 94.2 2.7 9.2E-05 42.7 19.2 105 104-214 140-252 (511)
4 3gia_A Uncharacterized protein 91.1 3.8 0.00013 40.7 14.7 99 103-208 134-233 (444)
5 2jln_A MHP1; hydantoin, transp 89.2 5.4 0.00019 40.8 14.3 45 96-140 144-188 (501)
6 3dh4_A Sodium/glucose cotransp 63.4 65 0.0022 32.9 12.5 45 246-292 308-352 (530)
7 4ain_A Glycine betaine transpo 61.5 9.1 0.00031 39.5 5.4 39 246-284 398-436 (539)
8 2wsw_A BCCT family betaine/car 51.0 25 0.00086 35.9 6.6 38 247-284 398-435 (509)
9 2a65_A Leutaa, Na(+):neurotran 36.3 21 0.00071 36.7 3.3 41 92-132 170-210 (519)
10 3arc_I Photosystem II reaction 8.3 2.2E+02 0.0074 17.9 2.0 16 262-277 11-26 (38)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=3.8e-83 Score=666.17 Aligned_cols=396 Identities=20% Similarity=0.334 Sum_probs=356.7
Q ss_pred CcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCC--CCCCCCCCCCCCccccccccccCCCCchHHHHHHHHhcc
Q psy234 1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELP--WTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQ 78 (445)
Q Consensus 1 ~~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lp--W~~C~~~wn~~~c~~~~~~~~~~~~~~~~~~f~~~vl~~ 78 (445)
+||+|++++++++++++||++++||+++|+++|+++++| |++|+ + |.+ ..++.++||++ +++.
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~-----~-~~~--------~~~~~~~~f~~-~l~~ 154 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT-----D-PDS--------ILRPFKEFLYS-YIGV 154 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C-----C-HHH--------HHHHHHHHHHH-HHTC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-----C-ccc--------ccCcHHHHHHH-HHCC
Confidence 479999999999999999999999999999999999999 65432 1 100 01245677765 5663
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHhhHHHHHHHHHHhhhcccCC----cccccceeee
Q psy234 79 QRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGV-RSAGKAVWVTALAPYVVLIILLCRGVTLPG----ADEGIRYYLT 153 (445)
Q Consensus 79 ~~s~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI-~~~gKv~~~~~~~p~vll~~l~ir~ltL~g----a~~Gl~~~f~ 153 (445)
++++++.|+++|++++|++++|+++++++.||+ |.+||+.+++.++|+++++++++|++|||| |.||++|+++
T Consensus 155 --~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~ 232 (519)
T 2a65_A 155 --PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT 232 (519)
T ss_dssp --CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS
T ss_pred --CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Confidence 677888999999999999999999999999999 568999999999999999999999999999 9999999999
Q ss_pred cCcccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCcc-
Q psy234 154 PQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKS- 232 (445)
Q Consensus 154 pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~~- 232 (445)
|||+++.|+++|.+|++|+|||+|+|+|++++||||||+|+|+.|||.++++.|+.+|++||++||+.++|++ ++.+
T Consensus 233 Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~ 310 (519)
T 2a65_A 233 PDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAF--FGVAN 310 (519)
T ss_dssp CCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 3333
Q ss_pred cccccccC-CceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhh
Q psy234 233 VADVGLEG-PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFV 311 (445)
Q Consensus 233 ~~~~~~~G-~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~ 311 (445)
++++..+| |||+|+++|+++++||+|++|+++||+++++||+||+++++|++++.++|+++ + +|+..+.++|++.
T Consensus 311 ~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~--~--~R~~~~~~v~~~~ 386 (519)
T 2a65_A 311 AVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK--L--SRKHAVLWTAAIV 386 (519)
T ss_dssp HHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--C--CHHHHHHHHHHHH
T ss_pred hHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhC--C--cHHHHHHHHHHHH
Confidence 44444578 99999999999999999999999999999999999999999999999999986 3 3444667789999
Q ss_pred hhhcccccccc-chhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcCCCCccccceeeeeehHHHHHHH
Q psy234 312 YICALPTTTYG-GVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTI 390 (445)
Q Consensus 312 ~l~gl~~~~~~-G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g~~~~~~w~~~~~~v~Pi~l~~i 390 (445)
+++|+|+++++ | +|++|++..+..+++.+++|+++++|+||.||+++|+++|.|++++++|+++|||++|++++++
T Consensus 387 fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i 463 (519)
T 2a65_A 387 FFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVL 463 (519)
T ss_dssp HHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHH
Confidence 99999999988 7 8999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHhhcccccccCCccCchhHHHHHHHHHHHHHH
Q psy234 391 FVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLM 425 (445)
Q Consensus 391 ~~~~~~~~~~~~~~~~~yp~w~~~~gw~~~~~~~l 425 (445)
++.+++++.+..+++|.||.|. ||.+++.+++
T Consensus 464 ~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i 495 (519)
T 2a65_A 464 LVVWAREYIPKIMEETHWTVWI---TRFYIIGLFL 495 (519)
T ss_dssp HHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCccCccHH---HHHHHHHHHH
Confidence 9999998877777888999885 9999887554
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.05 E-value=1.1 Score=44.54 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCccc--ccCchhHHHHHHhHhhhhcccc
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHK--LKNSKVWIDAASQIFFSLGPGF 180 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~--l~~~~vW~~A~~Q~ffSlslG~ 180 (445)
++......+|+|..+|+.......-.+.++++.+-++...+. +. +.++|+. ..+...+..|+..++|+. .|+
T Consensus 134 ~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~af-~G~ 207 (445)
T 3l1l_A 134 WIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG-ET----YMAAWNVSGLGTFGAIQSTLNVTLWSF-IGV 207 (445)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC-CC----CCCC-----------HHHHHHHHHHTT-TTT
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----cccccCccCCccHHHHHHHHHHHHHHH-HhH
Confidence 344556678999999987654433333333333333322111 11 1223321 112345677888999998 688
Q ss_pred ccceeecccccC-CCCcccchhhhhhHHHHHHHHH
Q psy234 181 GTLLALSSYNKF-DNNCYRDAILTSSINCLTSFLA 214 (445)
Q Consensus 181 G~~ity~Sy~~~-~~n~~~~a~~v~~~~~~~sila 214 (445)
-....++...|+ +.|++|..........+..++.
T Consensus 208 e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~ 242 (445)
T 3l1l_A 208 ESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLS 242 (445)
T ss_dssp THHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 777777776665 3555555554444444443333
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=94.25 E-value=2.7 Score=42.67 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=51.0
Q ss_pred HHHHHHHhhhccchhHHHHHhh----HHHHHHHHHHhhhcccCCcccccc---eeeecCcccccCchhHHHHHHhHhhhh
Q psy234 104 LVYFSLWKGVRSAGKAVWVTAL----APYVVLIILLCRGVTLPGADEGIR---YYLTPQWHKLKNSKVWIDAASQIFFSL 176 (445)
Q Consensus 104 iv~~~v~kGI~~~gKv~~~~~~----~p~vll~~l~ir~ltL~ga~~Gl~---~~f~pd~~~l~~~~vW~~A~~Q~ffSl 176 (445)
+......+|+|..+|+...... .|.++++++.+.... +|...+.+ ..+.|+++. ...| .++..++|+.
T Consensus 140 ~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~a~ 214 (511)
T 4djk_A 140 ALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLH-SGAPVAIEMDSKTFFPDFSK---VGTL-VVFVAFILSY 214 (511)
T ss_dssp HHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-------------CCCCCTTS---TTTT-TTHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccCcccccCCCccc---chHH-HHHHHHHHHH
Confidence 3445667899988888655322 233333333222221 22211111 112344432 2233 4677788888
Q ss_pred ccccccceeecccccC-CCCcccchhhhhhHHHHHHHHH
Q psy234 177 GPGFGTLLALSSYNKF-DNNCYRDAILTSSINCLTSFLA 214 (445)
Q Consensus 177 slG~G~~ity~Sy~~~-~~n~~~~a~~v~~~~~~~sila 214 (445)
.|+-....++.-.|+ +.|++|..........++.++.
T Consensus 215 -~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~ 252 (511)
T 4djk_A 215 -MGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVG 252 (511)
T ss_dssp -TTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHH
Confidence 577777777766654 4556665554444444444443
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=91.09 E-value=3.8 Score=40.70 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccceeeecCcccccCchhHHHHHHhHhhhhcccccc
Q psy234 103 LLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182 (445)
Q Consensus 103 ~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~ 182 (445)
++......+|+|..+|+.......-.+.++++.+-++...+. + .+.|++..- +...+..+...++|+.. |+..
T Consensus 134 ~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~-~----~~~~~~~~~-g~~~~~~~~~~~~~a~~-G~e~ 206 (444)
T 3gia_A 134 AFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHP-S----YVIPDLAPS-AVSGMIFASAIFFLSYM-GFGV 206 (444)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG-G----GTSCCCSHH-HHHHHHHHHHHGGGGGT-HHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-h----hcCCCCCCc-chHHHHHHHHHHHHHHH-hHHH
Confidence 344556678999988887654433333322222222211111 1 133433211 11235667777777773 6666
Q ss_pred ceeecccccCC-CCcccchhhhhhHHH
Q psy234 183 LLALSSYNKFD-NNCYRDAILTSSINC 208 (445)
Q Consensus 183 ~ity~Sy~~~~-~n~~~~a~~v~~~~~ 208 (445)
...++...|+. .|++|..........
T Consensus 207 ~~~~~~e~k~P~r~ip~ai~~~~~~~~ 233 (444)
T 3gia_A 207 ITNASEHIENPKKNVPRAIFISILIVM 233 (444)
T ss_dssp HHTTGGGBSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcccchhHHHHHHHHHHH
Confidence 65666555432 344454444333333
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=89.25 E-value=5.4 Score=40.82 Aligned_cols=45 Identities=4% Similarity=-0.029 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcc
Q psy234 96 LCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVT 140 (445)
Q Consensus 96 ~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~lt 140 (445)
++.++.|++.......|.|...|......++-++.++.+.+..+.
T Consensus 144 v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~ 188 (501)
T 2jln_A 144 LWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLD 188 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777778888877776555443334444555555443
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=63.41 E-value=65 Score=32.88 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=32.8
Q ss_pred hhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcC
Q psy234 246 IVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEY 292 (445)
Q Consensus 246 i~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~ 292 (445)
.++|.....+| +....++...++-|..+|.-+.+....+.+.+..
T Consensus 308 ~~~p~l~~~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Di 352 (530)
T 3dh4_A 308 KAYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDI 352 (530)
T ss_dssp GHHHHHHTTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 35677665555 5567788888888888888888888888765543
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=61.45 E-value=9.1 Score=39.45 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=28.9
Q ss_pred hhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhH
Q psy234 246 IVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAM 284 (445)
Q Consensus 246 i~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~i 284 (445)
.++=+.++++|.+.+.+.++-+++++.=+||.=|..-++
T Consensus 398 ~alf~~l~~lP~~~i~~~l~iili~~FfvTSaDS~s~vl 436 (539)
T 4ain_A 398 EQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTVM 436 (539)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred hHHHHHHHHCchHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 355577899999999999888877776677766654433
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=51.00 E-value=25 Score=35.92 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=27.9
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhH
Q psy234 247 VYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAM 284 (445)
Q Consensus 247 ~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~i 284 (445)
++-+.++++|.+.+.+.++-++++..=+||.=|..-++
T Consensus 398 alf~~l~~lP~~~i~~~l~iil~~~FfvTSaDS~s~vi 435 (509)
T 2wsw_A 398 AIIETWAALPLSTATMWGFFILCFIATVTLINACSYTL 435 (509)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 45567889999999998888877766667766654433
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=36.33 E-value=21 Score=36.73 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHH
Q psy234 92 LSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLI 132 (445)
Q Consensus 92 ~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~ 132 (445)
..+.++.++++.+++.++.||+||..|+++....+-+++++
T Consensus 170 ~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ 210 (519)
T 2a65_A 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLV 210 (519)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999998877666554443
No 10
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=8.28 E-value=2.2e+02 Score=17.92 Aligned_cols=16 Identities=31% Similarity=0.683 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhc
Q psy234 262 SIIFFLMLITLGLDST 277 (445)
Q Consensus 262 ~~lFFl~l~~agl~S~ 277 (445)
.++||..||+.|.-|.
T Consensus 11 vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 11 VVTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccCC
Confidence 4688999999888663
Done!