RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy234
(445 letters)
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 738 bits (1907), Expect = 0.0
Identities = 301/447 (67%), Positives = 353/447 (78%), Gaps = 7/447 (1%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPV------- 55
GVGYAIC++ Y+ YYNTII WA+YYLF+SF SELPWTSCNN WNT NCT V
Sbjct: 82 GVGYAICIIAFYVAFYYNTIIAWALYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSS 141
Query: 56 TVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRS 115
+ + +T SPA+EFFER VLE Q+S+G+D LG K LALC+ AVF++VYFSLWKGV+S
Sbjct: 142 SSNGTWTLHSPAEEFFERKVLELQKSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKS 201
Query: 116 AGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFS 175
+GK VWVTA PYVVL ILL RG+TLPGA +GI+YYLTP W KLK+ KVWIDAA+QIFFS
Sbjct: 202 SGKVVWVTATMPYVVLSILLIRGLTLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFS 261
Query: 176 LGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVAD 235
LGPGFG LLALSSYNKF NNCYRDA++TSSINCLTSF +GFVIFSVLGYMAH QN +
Sbjct: 262 LGPGFGVLLALSSYNKFHNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEV 321
Query: 236 VGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRL 295
V EGPGLVFIVYPEAIA + GS FW+IIFFLMLITLGLDSTFGGLEA+IT LCDE+P +
Sbjct: 322 VATEGPGLVFIVYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPV 381
Query: 296 LGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYG 355
LG+ RE+FV VV ++ ALPT TYGG+Y+V L+ + G +ILFVVF+EA V W YG
Sbjct: 382 LGKRRELFVLGVVIICFLLALPTVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYG 441
Query: 356 VDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRL 415
VDRFS DIE MLG RPGLYWR+CW +ISP FLL I +FSL+ YE + +YVYP WS +
Sbjct: 442 VDRFSDDIEEMLGFRPGLYWRVCWKFISPIFLLFIVIFSLVSYEPLQYQDYVYPYWSTVV 501
Query: 416 GWTLTASSLMCIPSYIVYKLYTTPGPL 442
GW +T SS++CIP Y +YKL TPG
Sbjct: 502 GWCITCSSIVCIPIYAIYKLIITPGTF 528
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 596 bits (1537), Expect = 0.0
Identities = 253/447 (56%), Positives = 326/447 (72%), Gaps = 5/447 (1%)
Query: 1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVN 60
G+GYAIC++ +Y+ YYNTII WA+YYL +SF + LPWTSC+N+WNT NCT N
Sbjct: 80 FKGIGYAICIIALYVASYYNTIIAWALYYLISSFATTLPWTSCDNSWNTGNCTNYFAKDN 139
Query: 61 YT----SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSA 116
T S+SPA+EF+ R VL+ RS GL LG I LALC+ +F +VYFS+WKGV+++
Sbjct: 140 ITWTLHSTSPAEEFYTRHVLQVHRSTGLGDLGGISWQLALCLFLIFTIVYFSIWKGVKTS 199
Query: 117 GKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSL 176
GK VWVTA PY+VL ILL RG TLPGA G+ YYL P+WHKL + VW+DAA+QIFFSL
Sbjct: 200 GKVVWVTATFPYIVLFILLIRGATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSL 259
Query: 177 GPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADV 236
GPGFG LLA SSYNKF NNCY+DA++TS +NCLTSF++GFVIF+VLGYMA ++N+ V +V
Sbjct: 260 GPGFGVLLAFSSYNKFHNNCYQDALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEV 319
Query: 237 GLE-GPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRL 295
+ GP L+FI Y EAIA M GS F++IIFFLM+ITLGLDSTFGGLE +ITA+ DE+P +
Sbjct: 320 ATDAGPSLLFITYAEAIANMPGSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHV 379
Query: 296 LGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYG 355
+G+ REIFV +V ++ +L T T+GG Y+V L + G A+L VV +EA V W YG
Sbjct: 380 IGKRREIFVLGLVIVCFLGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYG 439
Query: 356 VDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRL 415
+ +F +DI+ MLG PG +WR+CW ISP FLL I V L+ + +Y YP WSI +
Sbjct: 440 ITQFCSDIKEMLGFTPGWFWRVCWVAISPLFLLFIIVSFLMNPPQLRLFDYNYPYWSIVV 499
Query: 416 GWTLTASSLMCIPSYIVYKLYTTPGPL 442
G+ + SS++CIP Y +YKL TPG L
Sbjct: 500 GYCIGMSSIICIPIYALYKLIITPGSL 526
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 552 bits (1424), Expect = 0.0
Identities = 237/436 (54%), Positives = 313/436 (71%), Gaps = 11/436 (2%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+GYA ++ Y+G+YYN II WA+YYLF+SF +ELPW SCNN+WNT C
Sbjct: 82 GIGYASMVIVFYIGIYYNVIIAWALYYLFSSFTTELPWASCNNSWNTPRCE--------- 132
Query: 63 SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWV 122
+SP +EF+ER VL + SDG++ LG ++ L LC++ +++VYF +WKGV+S+GK V+
Sbjct: 133 KTSPVEEFWERKVL--KLSDGIEDLGGLRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYF 190
Query: 123 TALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182
TA PYVVL++LL RGVTLPGA +GI +YLTP W KL + +VWIDAA+QIFFSLG GFG
Sbjct: 191 TATFPYVVLLVLLVRGVTLPGAADGIDFYLTPDWSKLLDPQVWIDAATQIFFSLGIGFGG 250
Query: 183 LLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPG 242
L+A +SYNKF NNCYRDA++ S IN TSFLAGFVIFSVLG+MA Q +++V GPG
Sbjct: 251 LIAFASYNKFHNNCYRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPG 310
Query: 243 LVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREI 302
L FI YPEA+ M+ S FWS++FFLMLITLGLDS FGG+E +ITAL DE+P LL + RE+
Sbjct: 311 LAFIAYPEAVTMLPLSPFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKRREL 370
Query: 303 FVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTD 362
F +V ++ L T GG+Y+ + + +LFVVF E V W+YG+DRF D
Sbjct: 371 FTLIVCVISFLIGLILVTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDD 430
Query: 363 IESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTAS 422
I+ MLG RPGL+WRLCW ++SP LL +F+FS++ Y+ + YVYP W+ LGW + S
Sbjct: 431 IKEMLGFRPGLFWRLCWKFVSPLILLFLFIFSIVQYKPLTYNNYVYPNWANALGWLMALS 490
Query: 423 SLMCIPSYIVYKLYTT 438
S++CIP Y +YKL +T
Sbjct: 491 SMLCIPLYSIYKLLST 506
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 549 bits (1417), Expect = 0.0
Identities = 245/463 (52%), Positives = 317/463 (68%), Gaps = 22/463 (4%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+GYA+ L+ Y+ +YN II W++YY FASF LPWTSCNN+WNT NC + T
Sbjct: 82 GIGYAVVLIAFYVDFFYNVIIAWSLYYFFASFTFNLPWTSCNNSWNTPNCYEPHWSEDGT 141
Query: 63 S---------------------SSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAV 101
+S A E+FER VLE S G+ LG+I+ + LC+ AV
Sbjct: 142 VPCRSANQSFSATNISAAEENFTSAALEYFERGVLELHVSRGVTDLGNIRWQILLCLFAV 201
Query: 102 FLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKN 161
+L+ YFSLWKG+ ++GK VW TAL PYVVL ILL RGVTLPG+ GI YYL P + LK+
Sbjct: 202 YLICYFSLWKGIHTSGKVVWFTALFPYVVLFILLIRGVTLPGSQNGIEYYLRPNFEALKS 261
Query: 162 SKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSV 221
++VW+DAA+Q+FFSLGPGFG LLA +SYNKF NN YRDA++TSSINCLTSFL+GFVIFSV
Sbjct: 262 AEVWVDAATQVFFSLGPGFGVLLAYASYNKFHNNVYRDALVTSSINCLTSFLSGFVIFSV 321
Query: 222 LGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGL 281
LGYMA K + DV EGPGLVF+VYPEA++ M GS FWS++FFLML+TLGLDS+FGG
Sbjct: 322 LGYMACRSGKPIEDVATEGPGLVFVVYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGS 381
Query: 282 EAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILF 341
EA+ITAL DE+P ++ RHRE+FV + F ++ L T GG+Y + L+ + G +IL
Sbjct: 382 EAIITALSDEFP-IIKRHRELFVGCLFAFYFVIGLAMCTQGGIYFFHLLDRYAAGYSILI 440
Query: 342 VVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDM 401
V EA V WIYG+DRF DI+ MLG RPG+YW++CW +I+P FLL + L+ Y+ +
Sbjct: 441 AVLFEAVAVSWIYGLDRFCQDIKEMLGFRPGIYWKICWKFIAPIFLLFNITYGLINYQPL 500
Query: 402 ISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
+Y YP W+ LGW SS+ IP +Y++ TPG I+
Sbjct: 501 TYDDYTYPTWANVLGWIFAGSSISMIPIVAIYQILNTPGTFIE 543
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 535 bits (1380), Expect = 0.0
Identities = 215/455 (47%), Positives = 299/455 (65%), Gaps = 17/455 (3%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNY- 61
G+GYA ++ ++ +YY I+ WA++YLF SF SELPWT+C+N WNT C + N
Sbjct: 81 GIGYASAVIVFWLNIYYIVILAWALFYLFNSFTSELPWTTCDNWWNTECCVETYSNNNLS 140
Query: 62 ----------TSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWK 111
S+SP +EF+ER VL SDG++ +GSI+ LALC++ +++ YF +WK
Sbjct: 141 NLTKNCSNNTNSTSPVEEFWERRVL--GISDGIEDIGSIRWELALCLLLAWIICYFCIWK 198
Query: 112 GVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQ 171
GV+S GK V+ TA PYV+LIILL RGVTLPGA +GI +YL P KL + +VWIDA +Q
Sbjct: 199 GVKSTGKVVYFTATFPYVMLIILLIRGVTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQ 258
Query: 172 IFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNK 231
IFFS G G G+L AL SYNKF+NNCY+D+I+ +N TSF AGF IFS+LG+MA Q
Sbjct: 259 IFFSYGIGLGSLTALGSYNKFNNNCYKDSIILCFLNSGTSFFAGFAIFSILGFMAQEQGV 318
Query: 232 SVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDE 291
+++V GPGL FI YP A++++ W+++FF+ML+ LGLDS F G+E +TA+ D
Sbjct: 319 PISEVAESGPGLAFIAYPRAVSLLPLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDL 378
Query: 292 YPR--LLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFG-PGLAILFVVFVEAA 348
YP L REIFVA+V ++ LP T GG+Y+ + + G+ +L++ F E
Sbjct: 379 YPNVLRLRYRREIFVAIVCLVCFLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFECI 438
Query: 349 GVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGE-YV 407
+ W+YG DRF +IE M+G+RPG +W+ CW +++P L IFVFSL+ Y + G YV
Sbjct: 439 AISWVYGADRFYDNIEDMIGYRPGPWWKYCWKFLTPAICLGIFVFSLVKYTPLTYGNTYV 498
Query: 408 YPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPL 442
YP W+ +GW L SS++CIP Y +Y L TPG L
Sbjct: 499 YPWWAEAIGWFLALSSMLCIPGYAIYILLKTPGSL 533
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 503 bits (1296), Expect = e-175
Identities = 234/450 (52%), Positives = 321/450 (71%), Gaps = 11/450 (2%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTV----- 57
GVGYA+ L+ +Y+G YYN II W++YYLF+SF SELPWT+C N WN+ NCT +
Sbjct: 81 GVGYAVILIALYVGFYYNVIIAWSLYYLFSSFTSELPWTTCGNVWNSPNCTDPKLLNASV 140
Query: 58 ---HVNYTSS--SPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKG 112
Y+ +PA EF+ER VL S G+ LG + L LC+ V ++++FSLWKG
Sbjct: 141 LGNGTKYSKYKLTPAAEFYERGVLHLHESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKG 200
Query: 113 VRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQI 172
V+++GK VW+TA PYVVL +LL GVTLPGA GI YL + +LK + VWIDAA+QI
Sbjct: 201 VKTSGKVVWITATLPYVVLFVLLIHGVTLPGAFNGINAYLHIDFKRLKEATVWIDAATQI 260
Query: 173 FFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKS 232
F+SLG GFG L+A +SYNKFDNNCYRDA+LTS+INC+TSF++GF IFS+LGYMAH
Sbjct: 261 FYSLGAGFGVLIAFASYNKFDNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVK 320
Query: 233 VADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEY 292
+ DV EG GLVFI+YPEAI+ ++GS FW+++FF+ML+TLG+DS+ GG+EA+IT L D++
Sbjct: 321 IEDVATEGAGLVFILYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDF 380
Query: 293 PRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCW 352
+L +HR++F V ++ AL T GG+Y++ L+ F G +ILF V +EA GV W
Sbjct: 381 -SILKKHRKLFTFGVAFITFLLALFCITNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSW 439
Query: 353 IYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWS 412
YGVDRFS DI+ M+G RPGLYWRLCW ++SP FLL + + S++ ++ + +Y +PPW+
Sbjct: 440 FYGVDRFSDDIQQMMGFRPGLYWRLCWKFVSPAFLLFVVIVSIINFKPLTYDDYNFPPWA 499
Query: 413 IRLGWTLTASSLMCIPSYIVYKLYTTPGPL 442
R GW + SS++ +P Y++YK +T PG
Sbjct: 500 NRTGWGIALSSMLLVPIYVIYKFFTVPGTF 529
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 489 bits (1261), Expect = e-170
Identities = 230/447 (51%), Positives = 307/447 (68%), Gaps = 10/447 (2%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCT-PVTVHVNY 61
GVG+ + L+ +Y+G +YN II WA++YLF+SF ELPW CNN+WN+ NC+ +
Sbjct: 81 GVGFTVILISLYVGFFYNVIIAWALFYLFSSFTGELPWIHCNNSWNSPNCSDAHPGDSSG 140
Query: 62 TSSS--------PAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGV 113
SS PA E+FER VL S G+ LG + L C++ V +L+YFSLWKGV
Sbjct: 141 DSSGLNDTYKTTPAAEYFERGVLHLHESHGIHDLGPPRWQLTSCLVVVIVLLYFSLWKGV 200
Query: 114 RSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIF 173
+++GK VW+TA PYVVL LL RGVTLPGA +GI+ YL+ + +L + VWIDAA+QI
Sbjct: 201 KTSGKVVWITATMPYVVLTALLLRGVTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQIC 260
Query: 174 FSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSV 233
FSLG GFG L+A SSYNKF NNCYRDAI+T+SIN LTSF +GFV+FS LGYMA N +
Sbjct: 261 FSLGVGFGVLIAFSSYNKFTNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPI 320
Query: 234 ADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293
DV +GPGL+FI+YPEAIA + S W++IFF+ML+TLG+DS GG+E++IT L DE+
Sbjct: 321 GDVAKDGPGLIFIIYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEF- 379
Query: 294 RLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWI 353
+ L RHRE+F +V ++ +L T GG+Y+ L+ F G +ILF V +EA G+ W
Sbjct: 380 KFLHRHRELFTLFIVLSTFLISLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWF 439
Query: 354 YGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSI 413
YGV RFS DIE M+G RPGLYWRLCW ++SP FLL + V S++ + G Y++P W+
Sbjct: 440 YGVGRFSDDIEEMIGQRPGLYWRLCWKFVSPCFLLFVVVVSIVTFRPPKYGSYIFPDWAN 499
Query: 414 RLGWTLTASSLMCIPSYIVYKLYTTPG 440
+GW L SS+ +P Y +YK + PG
Sbjct: 500 MVGWCLAISSMAMVPLYAIYKFCSLPG 526
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 448 bits (1153), Expect = e-154
Identities = 199/448 (44%), Positives = 287/448 (64%), Gaps = 8/448 (1%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+GY + L+ + +YYN II W ++YLFASF S LPW C N WNT +C V N
Sbjct: 81 GIGYGMLLVSGLVCIYYNVIIAWTLFYLFASFTSVLPWEHCGNWWNTESCLEHRVKDNMG 140
Query: 63 SS--------SPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVR 114
+ SP++E++ R VL Q S G+ G ++ LALC++ +++V+F L+KGV+
Sbjct: 141 ALPVNLTRTVSPSEEYWNRRVLGIQGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVK 200
Query: 115 SAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFF 174
S+GK V+ TA PY++LI+LL RGVTL GA +GI++YLTP +H+L +S+VW DAASQIF+
Sbjct: 201 SSGKVVYFTATFPYIILIVLLVRGVTLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFY 260
Query: 175 SLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVA 234
SLG GFG LL ++SYNKF+NN YRD ++ + NC+TS AGF IFSVLG+MAH V
Sbjct: 261 SLGIGFGGLLTMASYNKFNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVK 320
Query: 235 DVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR 294
DV GPGL F+ YPEA+ ++ S FWSI+FF ML+TLGLDS F LE ++TA+ DE+P
Sbjct: 321 DVADAGPGLAFVAYPEALTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPY 380
Query: 295 LLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIY 354
LL +++ F+ ++ +Y+ L T GG+Y + ++ + ++ + + W+Y
Sbjct: 381 LLRKYKTWFLGLICVGMYLLGLLLVTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVY 440
Query: 355 GVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
G+ RF DI+ M+G P LY++ CW +ISP LL I V+S++ Y+ G Y YPPW+
Sbjct: 441 GIQRFCRDIKMMIGFEPNLYFKACWMFISPALLLFILVYSIVKYQPSEYGSYRYPPWAEL 500
Query: 415 LGWTLTASSLMCIPSYIVYKLYTTPGPL 442
LG + S + IP + + G L
Sbjct: 501 LGILMGLLSCLMIPIGAIVAILREEGSL 528
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 428 bits (1101), Expect = e-146
Identities = 209/455 (45%), Positives = 292/455 (64%), Gaps = 15/455 (3%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+GYA ++ + +YY I+ W +YYLF SF+SELPW CN +WNT NC T+ N T
Sbjct: 82 GIGYASIVIVSLLNIYYIVILAWGLYYLFQSFQSELPWAHCNQSWNTPNCVEDTLRKNKT 141
Query: 63 ---------SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGV 113
+SP EF+ER+VL S G++ +G+IK LALC++ V+++ +F +WKGV
Sbjct: 142 LWASINATNFTSPVTEFWERNVLSL--SSGIEHVGTIKWDLALCLLLVWVICFFCIWKGV 199
Query: 114 RSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIF 173
+S GK V+ TA P+++LI+LL RGVTLPGA EGI++YL P +L + +VWIDA +QIF
Sbjct: 200 KSTGKVVYFTATFPFLMLIVLLIRGVTLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIF 259
Query: 174 FSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSV 233
FS G + +L SYNK+ NCYRD +L +N TSF++GF IFSVLG+MA Q +
Sbjct: 260 FSYAICLGAMTSLGSYNKYKYNCYRDCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDI 319
Query: 234 ADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 293
ADV GPGL FI YP+A+ MM FW+I+FF+ML+ LGLDS F +E IT+L D YP
Sbjct: 320 ADVAESGPGLAFIAYPKAVTMMPLPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYP 379
Query: 294 RLL--GRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVF-GPGLAILFVVFVEAAGV 350
L G REIF+A+V Y+ L T GG+Y+ + + G+ +L+V F E V
Sbjct: 380 SFLRKGYRREIFIAIVCFISYLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAV 439
Query: 351 CWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGE-YVYP 409
W+YG D F IE M+G+RPG + + W I+P + F+FSL+ Y+ + + YVYP
Sbjct: 440 AWVYGADNFYDAIEDMIGYRPGPWMKWSWIVITPVLCVGCFIFSLVKYKPLTYNKVYVYP 499
Query: 410 PWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
W+I LGW L SS++CIP +V ++ + GPLI+
Sbjct: 500 EWAIGLGWVLALSSMICIPMVVVIRIIQSDGPLIE 534
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 422 bits (1087), Expect = e-143
Identities = 205/442 (46%), Positives = 290/442 (65%), Gaps = 4/442 (0%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
GVG A ++ ++ +YY II WA+YYL+ SF + LPW SC+N WNT C N T
Sbjct: 123 GVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTTLPWKSCDNPWNTDRCFSNYSMANTT 182
Query: 63 S-SSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVW 121
+ +S EF+ER++ Q +DGL++ G I+ LA+ + ++LVYF +WKGV GK V+
Sbjct: 183 NMTSAVVEFWERNM--HQMTDGLEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVY 240
Query: 122 VTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFG 181
+A PY++L IL RGVTLPGA EGI +Y+TP + KL +S+VW+DAA+QIFFS G G G
Sbjct: 241 FSATYPYIMLFILFFRGVTLPGAKEGILFYITPNFSKLSDSEVWLDAATQIFFSYGLGLG 300
Query: 182 TLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGP 241
+L+AL SYN F NN YRD+I+ IN TS AGFVIFS++G+MAHV + +ADV GP
Sbjct: 301 SLIALGSYNPFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGP 360
Query: 242 GLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHRE 301
GL F+ YPEA+ + S W+++FF ML+ LG+DS F +E ITAL DE+PRLL RE
Sbjct: 361 GLAFLAYPEAVTQLPISPLWAVLFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNRRE 420
Query: 302 IFVAVVVTFVYICALPTTTYGGVYLVNFLNVF-GPGLAILFVVFVEAAGVCWIYGVDRFS 360
IF+AVV Y+ L T GG+Y+ + + G+++LF+VF E + W YGV+RF
Sbjct: 421 IFIAVVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFY 480
Query: 361 TDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLT 420
+IE M+G+RP ++W+LCW++ +P + +F+FS + + G YV+P W +GW +
Sbjct: 481 DNIEEMVGYRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGNYVFPKWGQGVGWFMA 540
Query: 421 ASSLMCIPSYIVYKLYTTPGPL 442
SS++ IP Y+ Y T G L
Sbjct: 541 LSSMVLIPGYMAYMFLTLKGSL 562
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 413 bits (1065), Expect = e-142
Identities = 161/306 (52%), Positives = 210/306 (68%), Gaps = 1/306 (0%)
Query: 90 IKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIR 149
I LALC++ ++LVY ++KGV+S+GK V+ TA PYVVL ILL RGVTLPGA +GI
Sbjct: 113 INWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGIL 172
Query: 150 YYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCL 209
Y+LTP W KL + KVW AA+QIFFSL GFG L+ +SYNKFDNN YRDA++ S +N L
Sbjct: 173 YFLTPDWSKLLDPKVWYAAATQIFFSLSIGFGGLITYASYNKFDNNIYRDALIVSILNTL 232
Query: 210 TSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLML 269
TS LAGFVIFSVLG++AH VADV GPGL F+VYPEAIA M WS++FF ML
Sbjct: 233 TSLLAGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVPQLWSVLFFFML 292
Query: 270 ITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNF 329
LGLDS F +E ++TA+ DE+P+ L + + + V ++ LP T GG+Y+++
Sbjct: 293 FLLGLDSQFAIVETIVTAIVDEFPK-LRKRKWLVTLGVCVVGFLLGLPYVTQGGIYILDL 351
Query: 330 LNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLT 389
L+ + ++L + E + WIYGVDRF DIE MLG P +YWR+CW +I+P LL
Sbjct: 352 LDYYAATFSLLVLALFELIAISWIYGVDRFLRDIEFMLGIPPSIYWRICWKFITPVILLV 411
Query: 390 IFVFSL 395
I +FSL
Sbjct: 412 ILIFSL 417
Score = 46.3 bits (111), Expect = 2e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASF 34
GVGYA ++ + +YYN II W +YYLFASF
Sbjct: 81 GVGYAQVVISFLVAIYYNVIIAWTLYYLFASF 112
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 408 bits (1049), Expect = e-138
Identities = 199/477 (41%), Positives = 284/477 (59%), Gaps = 38/477 (7%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANC---------- 52
GVG + L+ ++ +YYN II +++YY+FASF+S LPW+ C++ W NC
Sbjct: 81 GVGITMVLVSTFVSIYYNVIIAYSLYYMFASFQSPLPWSDCSS-WADENCSTSPITHCNV 139
Query: 53 --TPVTVHVNYT------------------SSSPAKEFFERSVLEQQRSDGLDRLGSIKL 92
+H N + P+++++++ L QRS G+D G I
Sbjct: 140 SLANNGIHENKSWVDSNNLTCINISIIYQPGQLPSEQYWDKVAL--QRSSGMDETGPIVW 197
Query: 93 SLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYL 152
LALC++ +++V +L+KG++S+GK V+ TAL PYVVL+ILL RG TL GA +GI YY+
Sbjct: 198 YLALCLLLAWIIVGAALFKGIKSSGKVVYFTALFPYVVLLILLVRGATLEGAKDGIEYYI 257
Query: 153 TPQWH--KLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLT 210
Q + KL ++VW DAA+QIF+SL +G L+ALSSYNKF NNC+ DAI+ NCLT
Sbjct: 258 GSQSNLTKLMEAEVWKDAATQIFYSLSVAWGGLVALSSYNKFHNNCFSDAIVVCVTNCLT 317
Query: 211 SFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLI 270
S AGF IFSVLG+MAHV K V++V G L FI YPEA+A + S WSI+FF ML+
Sbjct: 318 SVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAFIAYPEALAKLPISPLWSILFFFMLL 377
Query: 271 TLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFL 330
TLGLDS F G+E + T + D +P+++ + R V +++ LP T G+Y VN +
Sbjct: 378 TLGLDSQFAGIETITTTIQDAFPKVMKKKRIPITLGVCIILFLLGLPCVTQAGIYWVNLI 437
Query: 331 NVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPG---LYWRLCWTYISPFFL 387
+ F G ILF +E G+ WIYG +RF DIE M+G + L+WR CW +I+P L
Sbjct: 438 DHFCAGWGILFAAVLELIGIIWIYGGNRFIEDIEMMIGKKSWIFWLWWRACWFFITPVLL 497
Query: 388 LTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
+ I ++SL+ + G YP W LGW + A L+ IP VYK+ G + +
Sbjct: 498 IAILIWSLVTFHSPTYGSVPYPDWGTALGWCMIAFCLIWIPIVAVYKIIKAKGNIFQ 554
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 401 bits (1032), Expect = e-136
Identities = 202/452 (44%), Positives = 292/452 (64%), Gaps = 12/452 (2%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPV---TVHV 59
G+GYA ++ + YY ++ WA++YLF SF ELPW+SCN+ WNT NC V
Sbjct: 82 GIGYASQVIVALLNFYYIIVLAWALFYLFNSFTWELPWSSCNHTWNTENCVEFQKRNYSV 141
Query: 60 NYT---SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSA 116
N T ++SP EF+ER VL + SDG++ +GS++ LALC++ +++ YF +WKGV+S
Sbjct: 142 NVTLENATSPVIEFWERRVL--RISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKST 199
Query: 117 GKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSL 176
GK V+ TA PY++L++LL RGVTLPGA GI++YL P +L + +VW+DA +QIFFS
Sbjct: 200 GKVVYFTATFPYLMLVVLLIRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQIFFSY 259
Query: 177 GPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADV 236
G L AL SYNK++NNCYRD I +N TSF+AGF IFS+LG+MA+ Q +++V
Sbjct: 260 AICLGCLTALGSYNKYNNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEV 319
Query: 237 GLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLL 296
GPGL FI YP A++MM S W+ FF+M++ LGLDS F +E+++TA+ D YP +
Sbjct: 320 AESGPGLAFIAYPRAVSMMPFSPLWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVF 379
Query: 297 GR--HREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVF-GPGLAILFVVFVEAAGVCWI 353
+ RE+ + V ++ L T GG+Y+ + + G+ +LFV E + W+
Sbjct: 380 RKKNRRELLILFVSIVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWV 439
Query: 354 YGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDM-ISGEYVYPPWS 412
YG DRF +IE M+G+RPG Y + CW +I+P + F+FSL+ Y + + EYVYP W
Sbjct: 440 YGADRFYDNIEDMIGYRPGPYIKYCWLFITPAVCVATFLFSLIKYTPLKYNKEYVYPWWG 499
Query: 413 IRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
+GW L SS++CIP +I+YKL TT G L +
Sbjct: 500 DAIGWLLALSSMVCIPLWIIYKLSTTKGSLRE 531
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 402 bits (1033), Expect = e-135
Identities = 201/478 (42%), Positives = 291/478 (60%), Gaps = 38/478 (7%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCT--------- 53
G G A+ ++ + + +YYN I+ + ++YLFAS LPW SCNN WNT C
Sbjct: 81 GCGIAMLIISVLIAIYYNIIMCYTLFYLFASLVEVLPWASCNNPWNTPECKDKDKLLLDS 140
Query: 54 ---------------------PVTVHVNYTSS------SPAKEFFERSVLEQQRSDGLDR 86
P VN+TS S ++E+F+ +VL + S G++
Sbjct: 141 CIISDHPKIQIKNSTFCMTAYPNLTMVNFTSVGNKTFVSGSEEYFKYNVL--KISAGIEY 198
Query: 87 LGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADE 146
G I+ LALC+ +++VY SL KG++S+GK V+ TA PYVVL+ILL RGVTLPGA
Sbjct: 199 PGEIRWPLALCLFLAWVIVYASLAKGIKSSGKVVYFTATFPYVVLVILLIRGVTLPGAGA 258
Query: 147 GIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSI 206
GI Y++TP+W KL ++ VW DAA+QIFFSL +G L+ LSSYNKF NNCYRD ++ +
Sbjct: 259 GIWYFITPKWEKLNDATVWKDAATQIFFSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCT 318
Query: 207 NCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFF 266
N TS AGFVIFSV+G+MAH ++ V +GPG+ F+VYPEA+ + S FW+IIFF
Sbjct: 319 NSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAFVVYPEALTRLPLSPFWAIIFF 378
Query: 267 LMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYL 326
LML+TLGLD+ F +E ++T++ DE+P+ L H+ +F V +I P T GG+Y+
Sbjct: 379 LMLLTLGLDTMFATIETIVTSVSDEFPKYLRTHKPLFTLVCCISFFIMGFPMITQGGMYM 438
Query: 327 VNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFF 386
+ ++ + +++ + E G+ +IYG+ RF DIE M+G +P +WR+CW +++P
Sbjct: 439 LQLVDTYAASYSLVIIAIFELVGISYIYGLQRFCEDIEMMIGFQPNKFWRVCWAFVTPTI 498
Query: 387 LLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
L I FS +E M G Y YP WS+ LGW + A S++ IP V K++ PG I+
Sbjct: 499 LTFILCFSFYQWEPMTYGSYHYPNWSMVLGWLMLACSVIWIPIMFVIKMHLAPGSFIE 556
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 396 bits (1019), Expect = e-133
Identities = 178/499 (35%), Positives = 255/499 (51%), Gaps = 82/499 (16%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSC----NNAWNTANCTPVTVH 58
G+G A C++ + +YYN II W +YLF SF+ LPW+SC N C
Sbjct: 82 GIGIASCVVSFLVALYYNVIIAWCFFYLFNSFQYPLPWSSCPTNGNGTGYVEECA----- 136
Query: 59 VNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGK 118
SSP + F+ R+ L S +D G + + LC++ +++VY + KG++S+GK
Sbjct: 137 ----KSSPTQYFWYRTTL--DISPSIDESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGK 190
Query: 119 AVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGP 178
V+ TA PY+VLII L RG+TL GA +G+++ TP++ KL + +VW+DAA+QIFFSLG
Sbjct: 191 VVYFTATFPYIVLIIFLIRGLTLKGAGDGLKHMFTPKFEKLLDPQVWLDAATQIFFSLGL 250
Query: 179 GFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQN-------- 230
GFG+L+A SSYN NNC+RDA+L S INC TS A V+FSVLG+ A +
Sbjct: 251 GFGSLIAFSSYNPPKNNCHRDAVLVSLINCFTSIFASIVVFSVLGFKATTRYDRCVDSNI 310
Query: 231 ---------------------------KSVADVGL-------------EGPGLVFIVYPE 250
+GL EG GL FIV+ E
Sbjct: 311 LILVINFLLNSTEDYVDNYTAINNVTLTENQTLGLTNCSLEDELDEAVEGTGLAFIVFTE 370
Query: 251 AIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTF 310
AI G+ FWS++FFLML+TLGL S FG LE ++T L D L +E +V
Sbjct: 371 AIVKFPGAPFWSVLFFLMLLTLGLGSMFGTLEGVLTPLFDSK-ILPKVPKEYLTGLVCLV 429
Query: 311 VYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHR 370
++ L T G Y V + + L +L + E V ++YG+DRF DIE M G R
Sbjct: 430 CFLIGLIFTQRSGNYWVQMFDSYSGTLPLLIIALFEMIAVSYVYGLDRFEDDIEYMTGKR 489
Query: 371 PGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVY---------------PPWSIRL 415
PG YW++ W Y+SP +L I V S++ +++ Y P W + +
Sbjct: 490 PGWYWKITWRYVSPLAMLVILVASIVQ---LVTKPPTYSAWNAELASTESLPYPGWGLAV 546
Query: 416 GWTLTASSLMCIPSYIVYK 434
L S++ IP + +
Sbjct: 547 IILLILLSILPIPVVALLR 565
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 394 bits (1013), Expect = e-132
Identities = 200/466 (42%), Positives = 279/466 (59%), Gaps = 28/466 (6%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVH---- 58
G+GYA ++ + YY I+ W +YYL SF + LPW +C + WNT NCT + H
Sbjct: 81 GLGYASMVIVFFCNTYYIMILVWGLYYLVHSFTNTLPWATCGHPWNTENCTEIFRHEDCA 140
Query: 59 ------------VNYTSS------SPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMA 100
+N + SP EF+E VL + S GL+ G++ + LC++A
Sbjct: 141 NGSLANSWSQTFLNLSCDELANKRSPVIEFWENKVL--RLSGGLEEPGALNWEMILCLLA 198
Query: 101 VFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLK 160
+++VYF +WKGV+S GK V+ TAL PYVVLI+LL GVTLPGA +GI YYL P W KL
Sbjct: 199 TWVIVYFCVWKGVKSTGKIVYFTALFPYVVLIVLLVHGVTLPGALDGIIYYLKPDWSKLG 258
Query: 161 NSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFS 220
++VWIDA +QIFFS G G L AL SYN+F NNCYRDA + + IN TSF AGFV+FS
Sbjct: 259 EAQVWIDAGTQIFFSYAIGLGALTALGSYNRFHNNCYRDAFILALINSGTSFFAGFVVFS 318
Query: 221 VLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGG 280
VLG+MA Q ++ V GPGL FI YP+A+ +M + W+ +FF ML+ LGLDS F G
Sbjct: 319 VLGFMASEQGVDISKVAESGPGLAFIAYPKAVTLMPVAPLWAALFFFMLLLLGLDSQFVG 378
Query: 281 LEAMITALCDEYP-RLLGR-HREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVF-GPGL 337
+E IT + D +P + GR REI A+ ++ L T GG+Y+ + + G+
Sbjct: 379 VEGFITGILDLFPQKYYGRLRREITAALCCLLCFLIDLSMVTQGGMYVFQLFDYYSASGI 438
Query: 338 AILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLG 397
+L+ F E + W+YG DRF DI M+G+RP + + CW+ I+P + IF+F ++
Sbjct: 439 TLLWQAFWECVVIAWVYGADRFMDDIARMIGYRPLPWMKWCWSVITPLVCVGIFLFHVVN 498
Query: 398 YEDMI-SGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPL 442
Y+ + + YVYP W +GW L SS++CIP ++YKL G
Sbjct: 499 YKPLTYNKTYVYPWWGEAIGWALALSSMLCIPLTVLYKLLRAKGSF 544
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 391 bits (1005), Expect = e-132
Identities = 196/453 (43%), Positives = 281/453 (62%), Gaps = 13/453 (2%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPV------- 55
G+GYA +++ Y+ +YY I+ WA++YLF+SF S LPW +CNN WN+ C
Sbjct: 83 GIGYASQVIESYLNVYYIIILSWALFYLFSSFTSVLPWATCNNPWNSDLCVDFLNHSGAD 142
Query: 56 TVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRS 115
++SP EF+E+ VL +DG+ +LG+++ LALC++ +++ YF +WKGV+S
Sbjct: 143 NRTPPENATSPVMEFWEKRVL--GLTDGIHKLGTVRWELALCLLLAWIICYFCIWKGVKS 200
Query: 116 AGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFS 175
GK V+ TA PY++L+ILL RGVTLPGA EGI +YL P +L + +VW+DA +QI FS
Sbjct: 201 TGKVVYFTATFPYLMLVILLVRGVTLPGAAEGIIFYLKPDLSRLADPQVWMDAGTQILFS 260
Query: 176 LGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVAD 235
G L AL SYNK+ NNCYRD I+ +N TSF+AGF IFSVLG+MA Q +++
Sbjct: 261 YAICQGCLTALGSYNKYTNNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISE 320
Query: 236 VGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRL 295
V GPGL FI YP A+ MM S WS +FFLMLI LGLDS F +E+M+TA D +P +
Sbjct: 321 VAESGPGLAFIAYPTAVTMMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGV 380
Query: 296 LGR--HREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFG-PGLAILFVVFVEAAGVCW 352
+ RE+ + + Y+ L T GG+Y+ + + G +LF+ E + W
Sbjct: 381 FRKKGRRELLILAIAVICYLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGW 440
Query: 353 IYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDM-ISGEYVYPPW 411
+YG +RF +IE M+G+RP ++CW +P L +F+FSL+ Y + + YVYPPW
Sbjct: 441 VYGANRFYDNIEDMIGYRPWPLIKICWLVFTPGLCLAVFLFSLIKYTPLKYNNSYVYPPW 500
Query: 412 SIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
LGW + SS++CIP Y ++ L T G L +
Sbjct: 501 GYVLGWLMALSSMVCIPLYAIFILLKTKGSLKQ 533
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 379 bits (974), Expect = e-127
Identities = 194/454 (42%), Positives = 287/454 (63%), Gaps = 14/454 (3%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPV----TVH 58
G+GYA +++ ++ +YY I+ WA++YLF F +ELPW +C + WNT NC + +
Sbjct: 83 GIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTTELPWATCGHEWNTENCVEFQKLNSSN 142
Query: 59 VNYTS----SSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVR 114
++ S +SP EF+ER VL SDG++ +G+++ LALC++A + + YF +WKG +
Sbjct: 143 CSHVSLQNATSPVMEFWERRVL--AISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTK 200
Query: 115 SAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFF 174
S GK V+VTA PY++L+ILL RGVTLPGA EGI++YL P +L + +VW+DA +QIFF
Sbjct: 201 STGKVVYVTATFPYIMLLILLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFF 260
Query: 175 SLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVA 234
S G L AL SYN ++NNCYRD I+ +N TSF+AGF IFSVLG+MA+ Q +A
Sbjct: 261 SYAICLGCLTALGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIA 320
Query: 235 DVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR 294
+V GPGL FI YP+A+ MM S W+ +FF+MLI LGLDS F +E+++TA+ D YP+
Sbjct: 321 EVAESGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPK 380
Query: 295 LL--GRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFG-PGLAILFVVFVEAAGVC 351
+ G RE+ + + Y L T GG+Y+ + + G+ +LFV E +
Sbjct: 381 VFRRGYRRELLILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIG 440
Query: 352 WIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDM-ISGEYVYPP 410
W+YG +RF +IE M+G+RP + CW I+P IF+F L+ Y+ + + Y YP
Sbjct: 441 WVYGSNRFYDNIEDMIGYRPLSLIKWCWMVITPGICAGIFIFFLVKYKPLKYNNVYTYPD 500
Query: 411 WSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIK 444
W +GW + SS++CIP +I K++ T G +
Sbjct: 501 WGYGIGWLMALSSMICIPLWICIKMWKTEGTFPE 534
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 366 bits (942), Expect = e-122
Identities = 188/461 (40%), Positives = 281/461 (60%), Gaps = 25/461 (5%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPV------- 55
GVGY + ++ Y+G+YYN +I A YY F S LPWT CNN WNT +C V
Sbjct: 97 GVGYGMMVVSTYIGIYYNVVICIAFYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSN 156
Query: 56 -------------TVHVNYT--SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMA 100
T +N T +SP++E++ R VL SD + G ++L L C+
Sbjct: 157 ATFANMSAVVSNLTELLNRTLKRTSPSEEYWRRYVL--NISDDIGNFGEVRLPLLGCLGV 214
Query: 101 VFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLK 160
+L+V+ L +GV+S+GK V+ TA PYVVL IL RG+TL GA GI YYLTPQW K+
Sbjct: 215 SWLVVFLCLIRGVKSSGKVVYFTATFPYVVLTILFIRGITLEGAISGIMYYLTPQWDKIL 274
Query: 161 NSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFS 220
++KVW DAASQIF+SLG +G L+ ++SYNKF NNCYRD+I+ S NC TS AGFVIFS
Sbjct: 275 DAKVWGDAASQIFYSLGCAWGGLITMASYNKFHNNCYRDSIIISITNCATSVYAGFVIFS 334
Query: 221 VLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGG 280
+LG+MA+ V++V GPGL F+ YPEA+ ++ S WS++FF MLI LGL + F
Sbjct: 335 ILGFMANHLGVDVSEVADHGPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCL 394
Query: 281 LEAMITALCDEYPRLLGRHREIFVAVVVTFV-YICALPTTTYGGVYLVNFLNVFGPGLAI 339
LE ++TA+ DE + +V + V + ++ +P TT G+Y + ++ + ++
Sbjct: 395 LETLVTAVVDEIGNDWIIRNKTYVTLGVAIIGFLLGIPLTTQAGIYWLLLMDNYAASFSL 454
Query: 340 LFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYE 399
+ + + + +IYG + DIE MLG P L++++CW ++SP + I +F+++ Y
Sbjct: 455 VIISCIMCIAIMYIYGHRNYFKDIEMMLGFPPPLFFQICWRFVSPAIIFFILIFTVIQYR 514
Query: 400 DMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPG 440
+ +YVYP W+I +G+ + SS++CIP Y ++K+ + G
Sbjct: 515 PITYNDYVYPGWAIVIGFLMALSSVICIPIYAIFKICMSEG 555
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 291 bits (746), Expect = 7e-93
Identities = 175/499 (35%), Positives = 248/499 (49%), Gaps = 86/499 (17%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
GVG A ++ ++ MYYN I WA +YLF SF+ LPW + C + YT
Sbjct: 85 GVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPW---------SVCPLNSNRTGYT 135
Query: 63 S----SSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGK 118
+SP + F+ R L S ++ G I+ ALC++ +L+VY + +G S GK
Sbjct: 136 EECEKASPTQYFWYRETL--NISPSIEESGGIQWEQALCLILAWLVVYLCILRGTESTGK 193
Query: 119 AVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGP 178
V+VTA PY+VLII L RG+TL GA G++Y TP+ +L N K WI+AA+QIFFSLG
Sbjct: 194 VVYVTATLPYLVLIIYLIRGLTLHGAANGLKYMFTPKLEQLANPKTWINAATQIFFSLGL 253
Query: 179 GFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFS------------------ 220
GFG+L+A +SYN+ NNC R AI+ S IN TS A V FS
Sbjct: 254 GFGSLIAFASYNEPSNNCERHAIIVSLINSGTSIFASIVTFSIYGFKATFNYENCLKKVI 313
Query: 221 -----------------VLGYMAHVQN-------------------KSVADVGLEGPGLV 244
L M N + D ++G GL
Sbjct: 314 LLLTNTFDLEEGSITMSNLEDMKKYLNAAYPQEYAQIAPQLKNCSLEKELDTAVQGTGLA 373
Query: 245 FIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRH--REI 302
FIVY EAI M S WS+++F ML+ LG+ S G A++T L D +++ H +E
Sbjct: 374 FIVYSEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDS--KIISSHLPKEA 431
Query: 303 FVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTD 362
+V I L T G Y + N + L++L +V VE VC++YG+ RF D
Sbjct: 432 ISGLVCFINCIIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFEKD 491
Query: 363 IESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGY----------EDMISGEYV---YP 409
+E+M GH+P YW++ W + SP ++++F+F L Y D G+ V YP
Sbjct: 492 LEAMTGHKPSWYWKIMWAFTSPLLIISLFIFYLTDYILTGTLQYQAWDATLGQLVTKDYP 551
Query: 410 PWSIRLGWTLTASSLMCIP 428
+++ + L ASS MCIP
Sbjct: 552 SYALAVIGLLVASSTMCIP 570
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 283 bits (726), Expect = 8e-90
Identities = 167/500 (33%), Positives = 241/500 (48%), Gaps = 74/500 (14%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
GVG + + +YYNTI+ W ++Y SF+ LPW+SC N
Sbjct: 83 GVGLGCVTVSFLVSLYYNTILAWVLWYFLNSFQHPLPWSSCPLDLNRTGFVEECQ----- 137
Query: 63 SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWV 122
S+ F+ R L + ++ GSI+ L LC+ A + +VY + +G+ + GK ++
Sbjct: 138 GSTAVSYFWYRQTL--NITPDINDSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKVIYF 195
Query: 123 TALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182
TAL PY+VL I L RG+TLPGA EG+ Y TP H L+N +VW+DAA+QIFFSL FG
Sbjct: 196 TALFPYLVLTIFLIRGLTLPGATEGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGG 255
Query: 183 LLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSV--------------------- 221
+A +SYN N+C +DA+ + +N +TS A +FSV
Sbjct: 256 HIAFASYNPPRNDCEKDAVTIALVNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILSLI 315
Query: 222 ------------------LGYMAHVQNKSVADVGLE-------------GPGLVFIVYPE 250
L ++ + VA + L+ GPGL FIV+ E
Sbjct: 316 NEFDFPEQSISRDNYPSVLMHLNATWPERVAQLPLKACLLEDFLDKSASGPGLAFIVFTE 375
Query: 251 AIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTF 310
A+ M G+ W+++FF ML TLGL S FG +E +IT L D +E +V
Sbjct: 376 AVLHMPGAQVWAVLFFGMLFTLGLSSMFGNVEGVITPLLDVGVLPRWVPKEALTGLVCLV 435
Query: 311 VYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHR 370
++ AL T G Y + + F L +L + F E GV ++YG+ RF DIE M G R
Sbjct: 436 CFLSALCFTLQSGNYWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDDIEWMTGRR 495
Query: 371 PGLYWRLCWTYISPFFLLTIFVFSLL--------------GYEDMISG-EYVYPPWSIRL 415
P LYWRL W +SP LLTIFV ++ YE S E +YP W +
Sbjct: 496 PSLYWRLTWRVVSPLLLLTIFVAYIILLFQKPPSYKAWNPKYELFPSREEKLYPGWVQAI 555
Query: 416 GWTLTASSLMCIPSYIVYKL 435
L+ ++ +P + +L
Sbjct: 556 CVLLSLLPVLWVPVVALAQL 575
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 278 bits (713), Expect = 2e-88
Identities = 159/458 (34%), Positives = 253/458 (55%), Gaps = 35/458 (7%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+G+A C++ +++ +YYN IIGW+++Y SF+ LPW C N ++ V
Sbjct: 82 GIGFASCIVCLFVALYYNVIIGWSLFYFSQSFQYPLPWDQCPLVKNASH---TFVEPECE 138
Query: 63 SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWV 122
SS ++ R L S + G + + +C++A +++V ++ KG++S+GK ++
Sbjct: 139 KSSATTYYWYREALNI--SSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYF 196
Query: 123 TALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182
++L PYVVL L RG+ L G+ +GIR+ TP+ + KVW +AA+Q+FF+LG GFG
Sbjct: 197 SSLFPYVVLACFLVRGLLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGG 256
Query: 183 LLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGY-MAHVQNKSVADVGL--- 238
++A SSYNK DNNC+ DA+L S IN TS LA V+F+VLG+ + V+ + + +GL
Sbjct: 257 VIAFSSYNKRDNNCHFDAVLVSFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSC 316
Query: 239 ----------EGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITAL 288
+G GL FI + EA+ S FWS++FFLML+ LGL S FG +E + T +
Sbjct: 317 LIEDELDKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPI 376
Query: 289 CDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAA 348
D + +EI + F ++ L G Y V + + L +L VV +E
Sbjct: 377 VDTFK----VRKEILTVICCLFAFLIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENI 432
Query: 349 GVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLL-------GY--- 398
V WIYG+ +F D++ MLG RP Y+ W YISP LL + S++ GY
Sbjct: 433 AVAWIYGIKKFMEDLKDMLGFRPSRYYYYMWKYISPLCLLVLLTASIVQMGLSPPGYNAW 492
Query: 399 -EDMISGEYV-YPPWSIRLGWTLTASSLMCIPSYIVYK 434
ED + E++ YP W + + +L +++ +P + +
Sbjct: 493 IEDEAAEEFLSYPTWGMAVCISLIVVAILPVPVVFIVR 530
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 257 bits (657), Expect = 1e-79
Identities = 160/502 (31%), Positives = 244/502 (48%), Gaps = 85/502 (16%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+GYA CL+ ++G+YYN IIGW+++Y F SF+ LPW+ C N + V
Sbjct: 82 GIGYASCLVCFFVGLYYNVIIGWSIFYFFKSFQYPLPWSECPI---VRNGSVAVVEAECE 138
Query: 63 SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWV 122
SS F+ R L+ S+ + G + + LC++ + +V ++ KG++S+GK ++
Sbjct: 139 KSSATTYFWYREALDI--SNSISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYF 196
Query: 123 TALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182
++L PYVVL+ L RG+ L GA +GI + TP+ K+ + +VW +AA+Q+FF+LG GFG
Sbjct: 197 SSLFPYVVLVCFLVRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGG 256
Query: 183 LLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSV--------------------L 222
++A SSYNK DNNC+ DA L S IN TS LA V+F+V L
Sbjct: 257 VIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLVVFAVLGFKANIMNEKCVVENAEKIL 316
Query: 223 GYM----------------AH---------------VQNKSVADVGLE------------ 239
GY+ +H V+ ++GL+
Sbjct: 317 GYLNTNVLSHDLIPPHVNFSHLTTKDYAEMYRVIMTVKEDHFKELGLDACLLEDELDKSV 376
Query: 240 -GPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGR 298
G GL FI + EA+ S FWS++FFLMLI LGL S G + + T + D +
Sbjct: 377 QGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTFKV---- 432
Query: 299 HREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDR 358
+E+F F ++ L G Y V + + L + VV +E V WIYG +
Sbjct: 433 RKEVFTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTKK 492
Query: 359 FSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLL-------GYEDMISGEYV---- 407
F ++ MLG RP ++ W Y+SP + + S++ GY I E
Sbjct: 493 FMQELTEMLGFRPYSFYFYTWKYVSPICMAVLMTASIIQLGVSPPGYSAWIREEAAERFL 552
Query: 408 -YPPWSIRLGWTLTASSLMCIP 428
YP W++ L TL + + +P
Sbjct: 553 FYPTWAMALLITLIILASLPLP 574
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 254 bits (650), Expect = 1e-78
Identities = 156/502 (31%), Positives = 232/502 (46%), Gaps = 74/502 (14%)
Query: 1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVN 60
+ GVG A + + +YYNTII W ++Y F SF+ LPW+ C N P
Sbjct: 80 LKGVGIASMCVSFLVSLYYNTIIAWVMWYFFNSFQEPLPWSQCPLNENRTGYIP-----E 134
Query: 61 YTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAV 120
SSP F+ R L S +D G I+ + LC+ + ++Y +G+ + GKAV
Sbjct: 135 CAKSSPVDYFWYRETLNT--STSIDDSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAV 192
Query: 121 WVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGF 180
+VT+ PY+VL I L RG+TL G+ GI++ TP ++L N W+DA +Q+F+S F
Sbjct: 193 YVTSTLPYLVLTIFLIRGLTLKGSVNGIKFLFTPDINELANPVTWLDAGAQVFYSFSLAF 252
Query: 181 GTLLALSSYNKFDNNCYRDAILTSSINCLTSFLA-------------------------- 214
G L++ SSYN NNC +DA++ S IN TS A
Sbjct: 253 GGLISFSSYNSVHNNCEKDAVIISVINGFTSIYAATVIYSIIGFRATERFDDCFDGNILT 312
Query: 215 ---------GFVIFSVLGYMAHVQNKSVADV-----------------GLEGPGLVFIVY 248
G + M N + D+ G+EG GL FIV+
Sbjct: 313 LINAFDLPEGNITQDNYQDMQQSLNSTDPDIISSLSLQTCDLNNFLSEGVEGTGLAFIVF 372
Query: 249 PEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVV 308
EAI M S WS++FF+ML LGL S FG +E ++ L D +EI ++
Sbjct: 373 TEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPKSWPKEIITGLIC 432
Query: 309 TFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLG 368
++ L G Y + + F + +L + F E V ++YG+DRF+ DIE M+G
Sbjct: 433 LVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVVYVYGIDRFNKDIEFMIG 492
Query: 369 HRPGLYWRLCWTYISPFFLLTIFVFSLL--------------GYEDMISGEYV-YPPWSI 413
H+P ++W+ W ISP +L IF+F + YE+ + + YP W
Sbjct: 493 HKPNIFWQATWRVISPLIMLVIFLFYFVVKVSQELFYSAWDPEYEEFPKSQKISYPTWIY 552
Query: 414 RLGWTLTASSLMCIPSYIVYKL 435
+ L + IP Y +YK
Sbjct: 553 VIIVILAGVPSLAIPGYAIYKA 574
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 246 bits (630), Expect = 1e-76
Identities = 124/410 (30%), Positives = 203/410 (49%), Gaps = 44/410 (10%)
Query: 15 MGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERS 74
+ YY II WA+ YLF SF AW + FF
Sbjct: 94 IATYYAVIIAWALSYLFFSF---------TLAW----------------GDDPEAFFFGD 128
Query: 75 VLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSA-GKAVWVTALAPYVVLII 133
L Q SDG LG + + ++ V+L+++F L++GV+ KA + +V+ +I
Sbjct: 129 FL--QLSDGPFDLGGFVWPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLFLI 186
Query: 134 LLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFD 193
L+ R +TLPGA +G+ TP W L + KVWI A QIFFSL GFG ++ +SY
Sbjct: 187 LVIRALTLPGAADGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIMITYASYLPKK 246
Query: 194 NNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIA 253
++ +A++ + N LAG +FS+LG+MA Q V++V G GL F+ +P+AI
Sbjct: 247 SDLTNNALIVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAIN 306
Query: 254 MMT-GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVY 312
+M G + ++FFL L+ GL S +E +I+AL D++ L R + + + +V F
Sbjct: 307 LMPPGGALFGVLFFLSLVFAGLTSLISLVEVVISALQDKFG--LSRKKAVTIVCLVGF-- 362
Query: 313 ICALPTTTYGGVYLV----NFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLG 368
+ +L T G+YL+ +F+N +G I+ V VE V W++G ++ + ++
Sbjct: 363 LVSLLFATGAGLYLLDIVDHFINNYG----IVLVGLVEVIVVGWVFGAEKLREHLNAVSD 418
Query: 369 HRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRL-GW 417
+ G +W ++P L + + L + YP W++ + GW
Sbjct: 419 FKVGKWWDFLIKVVTPLVLGYMLILGL--IGLLTEPYGGYPVWALLIFGW 466
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 213 bits (545), Expect = 1e-63
Identities = 127/445 (28%), Positives = 204/445 (45%), Gaps = 49/445 (11%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
GVGY+ L + +YYN + WA++YL SF+ LPW C +
Sbjct: 82 GVGYSSVLACFLVALYYNVVNSWALFYLGHSFQFPLPWEQC------PLVKNSSDP-ECA 134
Query: 63 SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWV 122
++P+ F+ + L + SD ++ GS+ LAL + + LVY ++ +G++S GK++
Sbjct: 135 RTTPSGYFWYQKTL--KASDRIEDGGSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSIIF 192
Query: 123 TALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182
L PYV+L+ LL R + L GA G+ + L + L N +W A Q+ FSLG GFGT
Sbjct: 193 LVLLPYVILLCLLIRSLFLEGAFFGLLWLLVAKVSSLANLSIWRVAGGQVLFSLGLGFGT 252
Query: 183 LLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPG 242
L+ +SY NNC DA + + +N LTS +A + F+V+G+ A V + +E
Sbjct: 253 LITYASYMPRKNNCLTDAFVVALVNLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLL 312
Query: 243 LVFIVYPEAIAMMTGSVFWSIIFFLMLITL------------------------------ 272
++ ++ PEA S+ + I+ L L L
Sbjct: 313 MLGVLPPEAKPPADLSLDPASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGSAFWAIVFF 372
Query: 273 ------GLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYL 326
GL + FG ++ + T L D + + + V V V + L T G Y
Sbjct: 373 LALLLAGLSTMFGIMQGIYTPLQDTFSFFRKHPKLLTVLVCVGLF-LGGLVFTQPSGSYF 431
Query: 327 VNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFF 386
+ L+ + L I+F+V E + W YG RF D+E +LG W+Y+SP
Sbjct: 432 RSLLDDYLVPLPIIFIVVFENIALAWAYGAKRFLADLEFLLGGPISSIVWWLWSYLSPVV 491
Query: 387 LLTIFVFSLLGYEDMISGEYVYPPW 411
LL +F+++L+ + Y W
Sbjct: 492 LLGLFLWTLI---QLYVQPPTYLAW 513
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 207 bits (528), Expect = 2e-62
Identities = 96/260 (36%), Positives = 152/260 (58%), Gaps = 6/260 (2%)
Query: 101 VFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQW-HKL 159
+ +V+ +++GV S G+ V++T P V++IILL RG +LP A +GIR Y KL
Sbjct: 120 TWFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYFATWRGDKL 179
Query: 160 KNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIF 219
+ ++W AA Q+FFS G GFG + A +SYN +N +DA++ + N L +AGF +F
Sbjct: 180 ASGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSNSLFEIIAGFAVF 239
Query: 220 SVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFG 279
++GY+ V L G L F+ YPEAIA M GS F++++FFL L LG+ S F
Sbjct: 240 GIVGYLGM--TPGVEGEALGGFVLGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGISSAFA 297
Query: 280 GLEAMITALCDEYPRLLGRHREIFVAVVVTFV-YICALPTTTYGGVYLVNFLNVFGPGLA 338
LEA++T +CD + + ++A VV FV ++ +LP T G YL++ ++ + +A
Sbjct: 298 LLEAVVTLICDS--GWGRKVKRWWIATVVCFVSFLLSLPYCTRFGYYLLDAVDAWISNVA 355
Query: 339 ILFVVFVEAAGVCWIYGVDR 358
++FVV+ E +Y +
Sbjct: 356 LVFVVWAECVAATTVYRFED 375
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 177 bits (450), Expect = 1e-49
Identities = 91/229 (39%), Positives = 143/229 (62%), Gaps = 5/229 (2%)
Query: 3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
G+G+A C++ ++ +YYN IIGW+++Y SF+ LPW C N ++ V
Sbjct: 82 GIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASH---TFVEPECE 138
Query: 63 SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWV 122
SS ++ R L S + G + + +C++A +++V ++ KG++S+GK ++
Sbjct: 139 KSSATTYYWYREALNI--SSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYF 196
Query: 123 TALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGT 182
++L PYVVLI L R + L G+ +GIR+ TP+ + KVW +AA+Q+FF+LG GFG
Sbjct: 197 SSLFPYVVLICFLIRALLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGG 256
Query: 183 LLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNK 231
++A SSYNK DNNC+ DA+L S IN TS LA V+F+VLG+ A+V N+
Sbjct: 257 VIAFSSYNKRDNNCHFDAVLVSFINFFTSVLATLVVFAVLGFKANVINE 305
Score = 116 bits (292), Expect = 4e-28
Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 235 DVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR 294
+ ++G GL FI + EA+ S FWS++FFLML+ LGL S FG +E +IT + D +
Sbjct: 373 NKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFKV 432
Query: 295 LLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIY 354
+EI + + L G Y V + + L +L VV +E V ++Y
Sbjct: 433 ----RKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVY 488
Query: 355 GVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLL-------GY----EDMIS 403
G+D+F D++ MLG P Y+ W YISP LL++ V S++ GY ED +
Sbjct: 489 GIDKFMEDLKDMLGFTPNRYYYYMWKYISPLVLLSLLVASVVQMGLSPPGYNAWIEDKAT 548
Query: 404 GEYV-YPPWSIRLGWTLTASSLMCIP 428
E++ YP W + + +L +++ +P
Sbjct: 549 EEFLSYPTWGLVVCISLVVLAILPVP 574
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 163 bits (414), Expect = 2e-45
Identities = 97/393 (24%), Positives = 160/393 (40%), Gaps = 56/393 (14%)
Query: 2 LGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNY 61
GV ++ +Y+ I GW + YL S A
Sbjct: 92 FGVLGGFLIL-----SFYSVIGGWILSYLVKSL---------TGALPD------------ 125
Query: 62 TSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVW 121
T A+ F + S + + +L + +GV G
Sbjct: 126 TGEQFAQLFGQ--------------TISNPGLAVIFHLLFLVLTALIVSRGV-KKGIEKA 170
Query: 122 VTALAP--YVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPG 179
+ P +V+ IIL+ R VTLPGA EG+++ P + KL + KVW+ A Q FFSL G
Sbjct: 171 NKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLG 230
Query: 180 FGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLE 239
FG ++ SSY ++ A+ +N L S LAG VIF L AD +
Sbjct: 231 FGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFG-------ADAS-Q 282
Query: 240 GPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRH 299
GPGLVFIV P M + I+FFL+L+ L S LE ++ AL D++ G
Sbjct: 283 GPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKF----GIS 338
Query: 300 REIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRF 359
R+ ++ +++ +P+ G+ + + ++ + + + A V W+ +
Sbjct: 339 RKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELL 398
Query: 360 STDIESMLGHRPGLYWRLCWTYISPFFLLTIFV 392
++ + + W YI+P +L + +
Sbjct: 399 REELNAGSA-KLFKIWLYLVRYIAPIVILVVLI 430
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 152 bits (388), Expect = 1e-41
Identities = 109/412 (26%), Positives = 169/412 (41%), Gaps = 78/412 (18%)
Query: 2 LGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNY 61
LGV A ++ +Y+ + GW + YLF S A+ V
Sbjct: 88 LGVLGAFLIL-----SFYSVVGGWVLAYLFKSLTGSF---------AGADAAEVGAAFFG 133
Query: 62 TSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSA-GKAV 120
+SP LS L + LL + +GV+ +A
Sbjct: 134 FIASP-------------------------LSPLLWHLLFLLLTALIVARGVKKGIERAS 168
Query: 121 WVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGF 180
+ +V+LIIL R +TLPGA EG+++ P + KL +V + A Q FFSL G
Sbjct: 169 KILMPLLFVLLIILAIRSLTLPGAGEGLKFLFKPDFSKL-TPEVVLAALGQAFFSLSLGM 227
Query: 181 GTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLE- 239
G ++ SY D N + A++ + ++ L + LAG VIF V GLE
Sbjct: 228 GVMITYGSYLPKDENLPKSALIVAILDTLVALLAGLVIFPA-----------VFAFGLEP 276
Query: 240 --GPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLG 297
GPGL+FI P A M G + I+FFL+L+ L S LE + L DE+ G
Sbjct: 277 AAGPGLLFITLPAVFAQMPGGRLFGILFFLLLLFAALTSAISLLEVPVAYLIDEF----G 332
Query: 298 RHREIFVAVVVTFVYICALPT---------TTYGGVYLVNFL-----NVFGPGLAILFVV 343
R+ +V +++ +P+ T G + + L N+ P +L +
Sbjct: 333 WSRKKATLIVGIIIFLLGIPSALSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAI 392
Query: 344 FVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSL 395
F V W+ G + ++ G + WR Y++P +L IF+ L
Sbjct: 393 F-----VGWVLGKEALREELNKGRGKKLFKIWRFLLRYVAPVLILIIFLLGL 439
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 114 bits (288), Expect = 1e-27
Identities = 100/431 (23%), Positives = 164/431 (38%), Gaps = 85/431 (19%)
Query: 13 IYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFE 72
+ + YY I W + Y F S P +Y + P+ +
Sbjct: 98 LLVNSYYVYIESWTLGYAFKSLTGGYPEPILRPF--------AEFFYSYIGAKPSSFAY- 148
Query: 73 RSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLI 132
+ + + F ++Y + KG+ + K + + L YV I
Sbjct: 149 -------------------IFFLITLALNFFILYRGVSKGIEAFAK-IAMPLL--YVFAI 186
Query: 133 ILLCRGVTLP-------GADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLA 185
IL R +TL A +G+ + P + KLK+ KVW+ AA QIFF+L G G ++
Sbjct: 187 ILAIRVLTLGTPVNPDWTALKGLNFLWNPDFSKLKDPKVWLAAAGQIFFTLSLGMGIIIN 246
Query: 186 LSSYNKFDNNCYRDAILTSSIN-----CLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEG 240
+SY + D++ ++ +S+N L + F+ LG +A VA G
Sbjct: 247 YASYLRKDDDIVLSSLTAASLNEFAEVILGGSIVIPAAFAFLGAVA------VAKAG--T 298
Query: 241 PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHR 300
GL FI P + M G F+ ++F +L G+ S+ L+ +I L +E L R
Sbjct: 299 FGLGFIALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEE----LKWSR 354
Query: 301 EIFVAVVVTFVYICALPTTTYG-------------GVYLVNFLNVFGPGLAILFVVFVEA 347
+ + V I LP G L+ L GL + V
Sbjct: 355 KHAALWIFALVIIVGLPVAFEFIDLKALDELDFWVGTILLVVL-----GLIEVIVFA--- 406
Query: 348 AGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLL-----GYEDMI 402
WI+G + +I + +++ YI+P FL+ + VF + GY +I
Sbjct: 407 ----WIFGAKKGWEEINRGALIKVPRFFKYVIKYITPAFLIVVLVFFTIDYIPGGYFKLI 462
Query: 403 SGEYVYPPWSI 413
V PW
Sbjct: 463 PDFEVLIPWVN 473
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 49.1 bits (117), Expect = 2e-06
Identities = 42/313 (13%), Positives = 89/313 (28%), Gaps = 20/313 (6%)
Query: 88 GSIKLSLALCVMAVFLLVY--FSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVT-LPGA 144
G L ++ ++A+ +VY + + + V+ + + + G
Sbjct: 110 GFTNLMYSILILALIAVVYSIYGGLSAIVWTDVIAVPFLVLGGVMTVYMAVSFIGGFAGV 169
Query: 145 DEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNC---YRDAI 201
+ + L + + +L +G + + D + + +
Sbjct: 170 SKMVDAAPGHFEMILNLPGIAVAIGGLWVANLY-YWGFIQYIIQRTLADKSVSEAQKGIV 228
Query: 202 LTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFW 261
+ + + L G + + + Q + L YP + GSV
Sbjct: 229 FAAFLMLIAPILVGLIGIAAYVITSDPQL-MASLGNLPSAANADKAYPWLTQFLPGSVGV 287
Query: 262 SIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGR-HREIFVAVVVTFVYICALPTTT 320
+ F L + S L + T L + ++ I AVVV +
Sbjct: 288 KGLVFAALAAAIVSSLAAMLNSTATILTMDIYKVFTFKTGVIVTAVVVLLIAALQFAGVK 347
Query: 321 YGGVYLVNFLN-VFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCW 379
+N L GP I+ + + W+ D+ G YWR
Sbjct: 348 GLLNTFLNLLTSAVGPLALIMLLDYF------WVKRTRISLHDLYRTKGIY--TYWRG-- 397
Query: 380 TYISPFFLLTIFV 392
+ +
Sbjct: 398 VSKGAIIGVVASI 410
>gnl|CDD|217911 pfam04123, DUF373, Domain of unknown function (DUF373). Archaeal
domain of unknown function. Predicted to be an integral
membrane protein with six transmembrane regions.
Length = 344
Score = 33.3 bits (77), Expect = 0.21
Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 29/178 (16%)
Query: 241 PGLVFIVYPEAIAMMTGSVFWSII-----FFLMLITLGLDSTFGGLEAMITALCDEYPRL 295
PGL+ ++Y + +I +L+ GLD L
Sbjct: 166 PGLLLLIYGLLALANLPAYALGVILLILGLYLLYRGFGLDDFLR--------------EL 211
Query: 296 LGRHREIFVAVVVTFV-YICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIY 354
L R RE +TF+ Y+ ++ G +Y L A V W+
Sbjct: 212 LKRVRESLYEGRITFITYVVSIILILIGIIYGYLSLEKLSAISAGGVAATFLNGAVPWLA 271
Query: 355 ---GVDRFSTDIESMLGHRPGLYWRLCWTYIS-PFFLLTIFVFSLLGYEDMISGEYVY 408
+ I+ L R L W YI+ PFF+L I + +S E
Sbjct: 272 LAALIAFLGKLIDEYLNGRFRL-----WRYINAPFFVLAIGLVVYGLSGYFLSIELAL 324
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase
TRaffic INducer (NOSTRIN). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Nitric Oxide Synthase TRaffic
INducer (NOSTRIN) is expressed in endothelial and
epithelial cells and is involved in the regulation,
trafficking and targeting of endothelial NOS (eNOS).
NOSTRIN facilitates the endocytosis of eNOS by
coordinating the functions of dynamin and the
Wiskott-Aldrich syndrome protein (WASP). Increased
expression of NOSTRIN may be correlated to
preeclampsia. NOSTRIN contains an N-terminal F-BAR
domain and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules. The F-BAR domain of NOSTRIN is
necessary and sufficient for its membrane association
and is responsible for its subcellular localization.
Length = 239
Score = 32.7 bits (75), Expect = 0.27
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 FFERSVLEQQRSDGLDRLGSIKLSLALCVM 99
ER+ LE + GL +L S KLS A +
Sbjct: 28 LQERAELELNYAKGLSKL-SGKLSKASKSV 56
>gnl|CDD|220601 pfam10149, TM231, Transmembrane protein 231. This is a family of
transmembrane proteins, given the number 231, of unknown
function. It is conserved in eukaryotes.
Length = 320
Score = 32.0 bits (73), Expect = 0.63
Identities = 7/50 (14%), Positives = 22/50 (44%)
Query: 364 ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSI 413
+ + ++P + ++ +I F +L IF++ +D + + +
Sbjct: 266 QEAILYQPSFWEKIKQFWIQYFSVLIIFLWVFEKVKDFLFERQIVRSVEV 315
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype PREFRAN.
This family is the long protein of a novel CRISPR
subtype, PREFRAN, which is most common in Prevotella and
Francisella, although widely distributed. The PREFRAN
type has Cas1, Cas2, and Cas4, but lacks the helicase
Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 30.2 bits (68), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 45 NAWNTANCTPVTVHVN-----YTSSSPAKEFFER 73
AWNT+ PVT VN Y + AK+FF +
Sbjct: 1063 PAWNTSKIDPVTGFVNLFDTKYETIDKAKQFFGK 1096
>gnl|CDD|224208 COG1289, COG1289, Predicted membrane protein [Function unknown].
Length = 674
Score = 30.1 bits (68), Expect = 2.7
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 27/111 (24%)
Query: 251 AIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITAL--C------DEYPRLLGRHREI 302
A+A++ G FW + LG + ++TA C R R
Sbjct: 362 ALALLLGYAFW--------LALGWPHGYW---ILLTAAVVCQPNAYGATRQRARQRILGT 410
Query: 303 FVAVVVTFVYICALPTTTYG-------GVYLVNFLNVFG-PGLAILFVVFV 345
+ +++ + + L G L LA L + +
Sbjct: 411 LLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLL 461
>gnl|CDD|225146 COG2237, COG2237, Predicted membrane protein [Function unknown].
Length = 364
Score = 29.6 bits (67), Expect = 2.9
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 12/160 (7%)
Query: 241 PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHR 300
PGLV ++Y ++I L+++ L + GL+ ++ L +
Sbjct: 164 PGLVLLLYGILALANILYPAGAVIGILLIVGLYMLYKGFGLDDLVAELLERV------RE 217
Query: 301 EIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
++ V Y+ A GG + G + F+ + W +
Sbjct: 218 ALYEGRVSFITYVVAGLLLILGGASSLTIALSSSAGALLAISTFILYS-TWWFTLAILTT 276
Query: 361 TDI---ESMLGHRPG--LYWRLCWTYISPFFLLTIFVFSL 395
+ ++G + + I F + F + L
Sbjct: 277 MVGIFFDLIIGGKVRIEYLKISFFYLIIAFLVYGAFGYIL 316
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 29.9 bits (68), Expect = 3.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 165 WIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAG 215
W DAA +F T L + N A+LT+ + L FLAG
Sbjct: 109 WADAARTVFAE------TARKLRRDGRRSNRALLRALLTADLEELREFLAG 153
>gnl|CDD|203104 pfam04839, PSRP-3_Ycf65, Plastid and cyanobacterial ribosomal
protein (PSRP-3 / Ycf65). This small acidic protein is
found in 30S ribosomal subunit of cyanobacteria and
plant plastids. In plants it has been named
plastid-specific ribosomal protein 3 (PSRP-3), and in
cyanobacteria it is named Ycf65. Plastid-specific
ribosomal proteins may mediate the effects of nuclear
factors on plastid translation. The acidic PSRPs are
thought to contribute to protein-protein interactions in
the 30S subunit, and are not thought to bind RNA.
Length = 47
Score = 26.5 bits (59), Expect = 4.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 150 YYLTPQ---WHKLKN---SKVWIDAASQIF 173
Y+ P+ W +LK SK WI A ++
Sbjct: 4 YFFWPRTDAWEQLKAELESKPWISEAERVN 33
>gnl|CDD|234609 PRK00068, PRK00068, hypothetical protein; Validated.
Length = 970
Score = 29.6 bits (67), Expect = 4.1
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 293 PRLLGRHREIFVAVVVTFVYICALPTTTYGGVYL-------VNFLNVFGPGLA---ILFV 342
P+L+ R + + + ++ + + P Y+ V + +VF L +LF+
Sbjct: 8 PKLMRRSKILIIIALIIILLLLFGPRLV--DFYIDWLWFGEVGYRSVFFTKLVTRIVLFI 65
Query: 343 -VFVEAAGVCWIYGV 356
V + G+ +I
Sbjct: 66 PVGLLVGGIVFISLW 80
>gnl|CDD|150723 pfam10081, DUF2319, Predicted membrane protein (DUF2319). Members
of this family of hypothetical bacterial proteins have
no known function.
Length = 534
Score = 28.8 bits (65), Expect = 5.9
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 30/141 (21%)
Query: 21 TIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQR 80
+ W YL P A VTV + + Q
Sbjct: 50 VFLRWLWRYLELPELRPRPRRGARLVA-VALGAAVTVLMLVQA------------ARWQN 96
Query: 81 SD----GLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAV-------------WVT 123
S G+ L + + V + +L + +R + + V
Sbjct: 97 SVRALMGMPPLETAAYLRGVLVALLVFGALVALGRLLRRLIRFLARRLQRVLPRRVANVV 156
Query: 124 ALAPYVVLIILLCRGVTLPGA 144
+ V+L+ L GV + GA
Sbjct: 157 GVLVVVLLLWTLTNGVLVRGA 177
>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane
protein [Intracellular trafficking and secretion].
Length = 227
Score = 28.2 bits (63), Expect = 8.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 221 VLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGL 274
VLG + +AD L GP + ++Y +++ S F I + TL L
Sbjct: 79 VLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYGISLFGTLSL 132
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.465
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,457,814
Number of extensions: 2351919
Number of successful extensions: 3765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3625
Number of HSP's successfully gapped: 189
Length of query: 445
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 345
Effective length of database: 6,502,202
Effective search space: 2243259690
Effective search space used: 2243259690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)