RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy234
(445 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 194 bits (494), Expect = 2e-56
Identities = 80/431 (18%), Positives = 148/431 (34%), Gaps = 41/431 (9%)
Query: 17 MYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVL 76
+YY I W + + +P N S + F E
Sbjct: 106 IYYVYIESWTLGFAIKFLVGLVPEPPPNAT---------------DPDSILRPFKEFLYS 150
Query: 77 EQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSA-GKAVWVTALAPYVVLIILL 135
G + + L + + + L +G+ + + +++ + L+
Sbjct: 151 YIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLV 210
Query: 136 CRGVTLP----GADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNK 191
R L A +G+ + TP + KLK+ VWI A QIFF+L GFG ++ +SY +
Sbjct: 211 IRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVR 270
Query: 192 FDNNCYRDAILTSSINCLTSFLAGFVI--FSVLGYMAHVQNKSVADVGLEGPGLVFIVYP 249
D + + +++N + G I + + + ++A G L FI P
Sbjct: 271 KDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG--AFNLGFITLP 328
Query: 250 EAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVT 309
+ G F ++F +L GL S+ ++ MI L DE L R+ V
Sbjct: 329 AIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE----LKLSRKHAVLWTAA 384
Query: 310 FVYICALPTTTYGGV-----YLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIE 364
V+ A + + + ++ WI+G D+ +I
Sbjct: 385 IVFFSAHLVMFLNKSLDEMDFWAG--TIGVVFFGLTELII-----FFWIFGADKAWEEIN 437
Query: 365 SMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSL 424
+ + YI+P FL + V Y I E + W I + +
Sbjct: 438 RGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVW-ITRFYIIGLFLF 496
Query: 425 MCIPSYIVYKL 435
+ ++ +
Sbjct: 497 LTFLVFLAERR 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 65/396 (16%), Positives = 116/396 (29%), Gaps = 120/396 (30%)
Query: 28 Y-YLFASFRSEL--P------WTSC-NNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLE 77
Y +L + ++E P + + +N V N + P + R L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKL--RQALL 145
Query: 78 QQRS------DGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTA---LAPY 128
+ R DG+ LGS K +AL V + + + K W+ +P
Sbjct: 146 ELRPAKNVLIDGV--LGSGKTWVALDVCLSYKVQ-------CKMDFKIFWLNLKNCNSPE 196
Query: 129 VVLIIL--LCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLAL 186
VL +L L + I A + P LL L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKL------RIHSIQAELRRLLKSKPYENCLLVL 250
Query: 187 ------SSYNKFDNNC-----YRDAILTSSIN-------CLTSFLAGFVIFSVLGYMAHV 228
++N F+ +C R +T ++ L V +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 229 QNKSVADVGLEGPGLVFIVYPEAIAMMTGSV--------FWSIIFFLMLITLGLDSTFGG 280
+ D+ P V P ++++ S+ W + L T+ ++S+
Sbjct: 311 LDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNV 365
Query: 281 LEAMITALCDEYPRLLGRHREIFVAVVVTF---VYICALPTTTYGGVYLVNFLNVFGPGL 337
LE EY R++F + V F +I PT L
Sbjct: 366 LEP------AEY-------RKMFDRLSV-FPPSAHI---PTIL----------------L 392
Query: 338 AILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGL 373
+++ W + + + L H+ L
Sbjct: 393 SLI-----------WFDVIKSDVMVVVNKL-HKYSL 416
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 66/380 (17%), Positives = 101/380 (26%), Gaps = 146/380 (38%)
Query: 46 AW-NTANCTPVTVHVNYTSSSPAKEFFERSV----LEQ-------QRSDGL------DRL 87
W + TP +Y S P S + Q + G L
Sbjct: 217 EWLENPSNTP---DKDYLLSIPI------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 88 -GSIKLSLALCVMAVFL---------------LVYFSLWKGVRSAGKAVWVTALAPYVVL 131
G+ S L V AV + + + GVR +A T+L P ++
Sbjct: 268 KGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILE 325
Query: 132 I-----------ILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSL--GP 178
+L +T + + NS + A Q+ SL G
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKT---------NSHL--PAGKQVEISLVNGA 374
Query: 179 ------GF-GTLLALSSY---NKFDNNCYRDAILTSS--INCLTSFLAGFVIF-SVLGYM 225
G +L L+ K + + I S + FL F S +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--LL 432
Query: 226 AHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGG----- 280
+ D L + F I V+ TF G
Sbjct: 433 VPASDLINKD--LVKNNVSFNAKDIQIP-----VY---------------DTFDGSDLRV 470
Query: 281 LEAMIT-ALCDEYPRLLGRHREIFVAVVVTFVYICALP-----TTTYGGVYLVNFLNVFG 334
L I+ + D I LP TT + +++ FG
Sbjct: 471 LSGSISERIVDC---------------------IIRLPVKWETTTQFKATHIL----DFG 505
Query: 335 PG----LAILFVVFVEAAGV 350
PG L +L + GV
Sbjct: 506 PGGASGLGVLTHRNKDGTGV 525
Score = 33.9 bits (77), Expect = 0.15
Identities = 50/321 (15%), Positives = 88/321 (27%), Gaps = 130/321 (40%)
Query: 61 YTSSSPAKEFFERSVLEQQRSDG--LDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGK 118
Y +S A++ + R+D D G FS+ V +
Sbjct: 1636 YKTSKAAQDVWN-------RADNHFKDTYG------------------FSILDIVINNPV 1670
Query: 119 AVWVTALAPYVVLIILLCRGVTLPGADEG--IR-YYLTPQWHKLKNSKVWIDAASQIFFS 175
+ + G ++G IR Y + + + K+ +IF
Sbjct: 1671 NLTI------------------HFGGEKGKRIRENYSAMIFETIVDGKL---KTEKIFKE 1709
Query: 176 LGPGFGTLLALSSYNKFDNNCYRD-------------AILTSSINCL-----------TS 211
+ +SY +R A+ +
Sbjct: 1710 INE------HSTSY------TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 212 FLAGFVIFSVLG-YMAHVQNKSVADV-----GLEGPGLVFI----VYPEAIAMMTGSVFW 261
AG S LG Y A S+ADV +E +VF + G +
Sbjct: 1758 TFAG---HS-LGEYAALA---SLADVMSIESLVE---VVFYRGMTMQVAVPRDELGRSNY 1807
Query: 262 SIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV----VTFVYICALP 317
+ + I G + EA + + + +G+ V +V Y+ A
Sbjct: 1808 GM----IAINPGRVAASFSQEA-LQYVVER----VGKRTGWLVEIVNYNVENQQYVAA-- 1856
Query: 318 TTTYG---GV-YLVNFLNVFG 334
G + + N LN
Sbjct: 1857 ----GDLRALDTVTNVLNFIK 1873
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 29.9 bits (66), Expect = 2.1
Identities = 15/139 (10%), Positives = 39/139 (28%), Gaps = 1/139 (0%)
Query: 258 SVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALP 317
S +S +++ G L P +F+ + F + LP
Sbjct: 81 SGLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLP 140
Query: 318 TTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRL 377
+ Y + L ++ V + S + ++ ++
Sbjct: 141 WSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSL-LLYIIKIGGDYFFIY 199
Query: 378 CWTYISPFFLLTIFVFSLL 396
W + L+ + +++
Sbjct: 200 AWLFTLVVSLVLVTIYADY 218
>3r3e_A Uncharacterized protein YQJG; thioredoxin domain, GST, glutathione
transferase, glutathion disulfide bond reductase,
transferase; HET: GSH; 2.21A {Escherichia coli}
Length = 328
Score = 27.4 bits (61), Expect = 8.9
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 371 PGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSY 430
Y L + P+ T+ + L G E IS V P GWT S
Sbjct: 52 KDRY-HLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLML-ENGWTFDDSFPGATGDT 109
Query: 431 I-----VYKLYTTPGP 441
+ +Y+LY P
Sbjct: 110 LYQNEFLYQLYLHADP 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.143 0.465
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,100,600
Number of extensions: 432276
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 25
Length of query: 445
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 348
Effective length of database: 3,993,456
Effective search space: 1389722688
Effective search space used: 1389722688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.2 bits)