RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy234
         (445 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score =  206 bits (524), Expect = 2e-61
 Identities = 83/434 (19%), Positives = 155/434 (35%), Gaps = 21/434 (4%)

Query: 3   GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
            +G     + + + +YY  I  W + +        +P    N     +            
Sbjct: 88  ILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSIL---------- 137

Query: 63  SSSPAKEFFERSVLEQQRSDGLDRLGSIK-LSLALCVMAVFLLVYFSLWKGVRSAGKAVW 121
              P KEF    +   +  + + +      +   + +     ++   + KG+    K   
Sbjct: 138 --RPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAM 195

Query: 122 VTALAPYVVLIILLCRGVTLPG-ADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGF 180
            T     V L+I +    T  G A +G+ +  TP + KLK+  VWI A  QIFF+L  GF
Sbjct: 196 PTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF 255

Query: 181 GTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEG 240
           G ++  +SY + D +     +  +++N     + G  I             +VA      
Sbjct: 256 GAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGA 315

Query: 241 PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHR 300
             L FI  P   +   G  F   ++F +L   GL S+   ++ MI  L DE         
Sbjct: 316 FNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV 375

Query: 301 EIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
               A+V    ++             ++ ++ +   + ++F    E     WI+G D+  
Sbjct: 376 LWTAAIVFFSAHLVMF------LNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 429

Query: 361 TDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLT 420
            +I      +    +     YI+P FL  + V     Y   I  E  +  W  R  + + 
Sbjct: 430 EEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR-FYIIG 488

Query: 421 ASSLMCIPSYIVYK 434
               +    ++  +
Sbjct: 489 LFLFLTFLVFLAER 502


>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli
          [TaxId: 562]}
          Length = 172

 Score = 27.7 bits (61), Expect = 2.2
 Identities = 7/34 (20%), Positives = 10/34 (29%)

Query: 23 IGWAVYYLFASFRSELPWTSCNNAWNTANCTPVT 56
          IG  V   +     E  +   NN       T + 
Sbjct: 30 IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 63


>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 355

 Score = 27.3 bits (60), Expect = 3.5
 Identities = 8/37 (21%), Positives = 11/37 (29%)

Query: 225 MAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFW 261
            AH    S     +EG G   IV    + +       
Sbjct: 99  GAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVL 135


>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
           {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 26.5 bits (58), Expect = 6.3
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 310 FVYICALPTTTYGGVYLVNFLNVFG---PGLAILFVVFVEAAGVCWIYGVDRFSTDIESM 366
           + Y  AL     GG   VN +  F    P    L     +   +  ++G D  S  +  +
Sbjct: 164 YAYAAALYANKRGGAAFVNVIPTFIANDPAFVELA----KENNLV-VFGDD-GSPALGGL 217

Query: 367 LGHR 370
           L   
Sbjct: 218 LVDL 221


>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 26.7 bits (59), Expect = 6.4
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 213 LAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITL 272
              + ++     +A     +    G  G G+ +++YP      +G      IF + L   
Sbjct: 127 NLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPLSTSESGYSTDLAIFAVHL--S 184

Query: 273 GLDSTFGGLEAMITALCDEYPRLLGRHREIFV-AVVVT-FVYICALPTTTYGGVYLV--- 327
           G  S  G +  + T L    P +      +F  ++ VT ++ + ALP        L+   
Sbjct: 185 GASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLLTDR 244

Query: 328 ----NFLNVFGPGLAILFVVFVEAAGVCWIY 354
                F    G G  +L+   +   G   +Y
Sbjct: 245 NFGTTFFQPSGGGDPVLYQHILWFFGHPEVY 275


>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 25.6 bits (56), Expect = 7.9
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 290 DEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVF 333
           +E P L G   E    +     YIC       G + + N+   F
Sbjct: 1   EEPPLLPG---ENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYF 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.465 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,739,211
Number of extensions: 81396
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 13
Length of query: 445
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,199,356
Effective search space: 428170092
Effective search space used: 428170092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)