BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2343
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 10/164 (6%)
Query: 2 ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
E+ GG W + SLHL SP + +P +PMP + YP + +L YL Y +K
Sbjct: 35 EASPGGAWQ------HAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQK 88
Query: 62 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FS 119
+ + + V + + + V +G++ + G A P Y G F+
Sbjct: 89 YAL--PVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFA 146
Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY 163
G LHS Y +P RV ++G GNSG I + S +E +
Sbjct: 147 GIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTW 190
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 81/208 (38%), Gaps = 30/208 (14%)
Query: 4 DLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
D+GG W N C S +P++ +N+ P ML Y+ A
Sbjct: 43 DVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE---MLRYVNRAADA 99
Query: 62 FDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY-- 117
DV H FNT V E+ +WEV L N + F+ G +R P+ G
Sbjct: 100 MDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDS 159
Query: 118 FSGEILHSMDYKSPDQ-------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
F GE HS + + + KRV V+G G +G I A+ ++++Y R
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQR--- 216
Query: 171 HYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
TP W LGN SKE+
Sbjct: 217 -----------TPNWCTPLGNSPMSKEK 233
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G +Y L PK + DY +++ P+ YP
Sbjct: 40 QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 99
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +++D++
Sbjct: 100 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ +S DI +
Sbjct: 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKY 219
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 220 GAKKLISCYRTAPMGYK-WPENWDERP 245
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLN 282
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G +Y L PK + DY +++ P+ YP
Sbjct: 40 QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 99
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +++D++
Sbjct: 100 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 219
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 220 GAKKLISCYRTAPMGYK-WPENWDERP 245
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLN 282
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G +Y L PK + DY +++ P+ YP
Sbjct: 45 QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +D++
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G +Y L PK + DY +++ P+ YP
Sbjct: 45 QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +D++
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G Y L PK + DY +++ P+ YP
Sbjct: 40 QADWGGQWNYTWRTGLDENGEPVHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 99
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +++D++
Sbjct: 100 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 219
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 220 GAKKLISCYRTAPXGYK-WPENWDERP 245
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLN 282
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G +Y L PK + DY +++ P+ YP
Sbjct: 45 QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +D++
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2 ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
++D GG WN G +Y L PK + DY +++ P+ YP
Sbjct: 45 QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
++ DY++ +K V + FNT V ++E ED + V + + +D++
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
K Y + GY +P+ D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 260 VHFVDDTHIEVDTIIYATGYNRHFPFID 287
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAV 101
Y +L+YL +FD+ H F TEV + +D +WEV +G+ + ++
Sbjct: 82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVN 141
Query: 102 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
G +PN G F GE +H+ + + +RV V+G G++G + +
Sbjct: 142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEV 201
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK----QVFKLAGFDGV 215
E + R TPQ+ + +GN+ + E+ +A IK ++++ A V
Sbjct: 202 EHLTVFVR--------------TPQYSVPVGNRPVNPEQ-IAEIKADYDRIWERAKNSAV 246
Query: 216 DYGLKKPDHP 225
+G ++ P
Sbjct: 247 AFGFEESTLP 256
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAV 101
Y +L+YL +FD+ H F TEV + +D +WEV +G+ + ++
Sbjct: 115 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVN 174
Query: 102 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
G +PN G F GE +H+ + + +RV V+G G++G + +
Sbjct: 175 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEV 234
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK----QVFKLAGFDGV 215
E + R TPQ+ + +GN+ + E+ +A IK ++++ A V
Sbjct: 235 EHLTVFVR--------------TPQYSVPVGNRPVNPEQ-IAEIKADYDRIWERAKNSAV 279
Query: 216 DYGLKKPDHP 225
+G ++ P
Sbjct: 280 AFGFEESTLP 289
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 44/188 (23%)
Query: 6 GGVWNSQASCGRVYPSLHLISPKFNTQ-------VPDYPMP------DNYPV-------- 44
GGVWN ++ P + +P T+ +P YP P N P+
Sbjct: 46 GGVWNYTSTLSNKLP-VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQ 104
Query: 45 --------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---- 92
+P+ + +Y R YA+ + T+V+++E+ + W V K
Sbjct: 105 SFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSP 162
Query: 93 --KKKYDFIAVCNGAQRVARYPN------YSGYFSGEILHSMDYKSPDQIRNKRVLVVGA 144
K +D +++CNG V PN Y+ G +LHS ++ P+ + VLVVG
Sbjct: 163 ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGG 222
Query: 145 GNSGCDIA 152
+S D+
Sbjct: 223 ASSANDLV 230
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 44/188 (23%)
Query: 6 GGVWNSQASCGRVYPSLHLISPKFNTQ-------VPDYPMP------DNYPV-------- 44
GGVWN ++ P + +P T+ +P YP P N P+
Sbjct: 44 GGVWNYTSTLSNKLP-VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQ 102
Query: 45 --------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---- 92
+P+ + +Y R YA+ + T+V+++E+ + W V K
Sbjct: 103 SFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSP 160
Query: 93 --KKKYDFIAVCNGAQRVARYPN------YSGYFSGEILHSMDYKSPDQIRNKRVLVVGA 144
K +D +++CNG V PN Y+ G +LHS ++ P+ + VLVVG
Sbjct: 161 ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGG 220
Query: 145 GNSGCDIA 152
+S D+
Sbjct: 221 ASSANDLV 228
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y +L YL A +FD+ F+T V + L++ W V G + F+ V
Sbjct: 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 159
G A P + G F+G+I+H+ + KRV V+G G+SG + +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 160 EKVYHSTRRGYHYYP 174
E+++ R + P
Sbjct: 215 EQLFVFQRSANYSIP 229
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y +L YL A +FD+ F+T V + L++ W V G + F+ V
Sbjct: 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 159
G A P + G F+G+I+H+ + KRV V+G G+SG + +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 160 EKVYHSTRRGYHYYP 174
E+++ R + P
Sbjct: 215 EQLFVFQRSANYSIP 229
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
Y +L YL A +FD+ F+T V + L++ W V G + F+ V
Sbjct: 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 159
G A P + G F+G+I+H+ + KRV V+G G+SG + +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 160 EKVYHSTRRGYHYYP 174
E+++ R + P
Sbjct: 215 EQLFVFQRSANYSIP 229
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 24 LISPKFNTQVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQY 80
L+ +F QV D +NY P + L+++ +DV S ++++
Sbjct: 240 LMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATE 299
Query: 81 EDIWEVELSNGKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQIRNKRV 139
+ ++E ++G K I + GA+ R P Y + + + P + KRV
Sbjct: 300 GGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRV 358
Query: 140 LVVGAGNSGCDIAVDASHHSEKV 162
V+G GNSG + A+D + E V
Sbjct: 359 AVIGGGNSGVEAAIDLAGIVEHV 381
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 24 LISPKFNTQVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQY 80
L+ +F Q+ D +NY P + L+ + ++DV S +++I
Sbjct: 29 LMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVE 88
Query: 81 EDIWEVELSNGKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQIRNKRV 139
+ ++E ++G K I V GA+ R P Y + + + P + KRV
Sbjct: 89 GGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRV 147
Query: 140 LVVGAGNSGCDIAVDASHHSEKV 162
V+G GNSG + A+D + E V
Sbjct: 148 AVIGGGNSGVEAAIDLAGIVEHV 170
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 40 DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 99
+N+P +P + ++ + K+ + + +IF V ++ +++ ++ K D +
Sbjct: 58 ENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKL-FTDSKAILADAV 116
Query: 100 AVCNGAQRVARYPNYSGYFSGEILHS-----------MDYKSPDQIRNKRVLVVGAGNSG 148
+ GA VA+ ++ G SGE+L D +P RNK + V+G G+S
Sbjct: 117 ILAIGA--VAKRLSFVG--SGEVLGGFWNRGISACAVCDGAAP-IFRNKPLAVIGGGDSA 171
Query: 149 CDIAVDASHHSEKVYHSTRR 168
+ A + + KVY RR
Sbjct: 172 MEEANFLTKYGSKVYIIHRR 191
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 40 DNYPVYPNH---SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
+N+P +P+ S ++D +R + KF TE+I E + +V+LS+
Sbjct: 72 ENFPGFPDGLTGSELMDRMREQSTKF--------GTEIIT----ETVSKVDLSSKPFKLW 119
Query: 91 ------GKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQI-RNKRVLVV 142
+ D I + GA + P Y+ I I RNK + V+
Sbjct: 120 TEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI 179
Query: 143 GAGNSGCDIAVDASHHSEKVYHSTRR 168
G G+S C+ A + + KV+ R+
Sbjct: 180 GGGDSACEEAQFLTKYGSKVFMLVRK 205
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 40 DNYPVYPNH---SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
+N+P +P+ S ++D +R + KF TE+I E + +V+LS+
Sbjct: 60 ENFPGFPDGLTGSELMDRMREQSTKF--------GTEIIT----ETVSKVDLSSKPFKLW 107
Query: 91 ------GKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQI-RNKRVLVV 142
+ D I + GA + P Y+ I I RNK + V+
Sbjct: 108 TEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI 167
Query: 143 GAGNSGCDIAVDASHHSEKVYHSTRR 168
G G+S C+ A + + KV+ R+
Sbjct: 168 GGGDSACEEAQFLTKYGSKVFMLVRK 193
>pdb|3GFS|A Chain A, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|B Chain B, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|C Chain C, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|D Chain D, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|E Chain E, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|F Chain F, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|G Chain G, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|H Chain H, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|I Chain I, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|J Chain J, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|K Chain K, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|L Chain L, Structure Of Yhda, K109dD137K VARIANT
Length = 174
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 65 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 117
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 118 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 150
SG + +++D+ S +Q + K V V G G+ G +
Sbjct: 78 MSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGIN 113
>pdb|3GFR|A Chain A, Structure Of Yhda, D137l Variant
pdb|3GFR|B Chain B, Structure Of Yhda, D137l Variant
pdb|3GFR|C Chain C, Structure Of Yhda, D137l Variant
pdb|3GFR|D Chain D, Structure Of Yhda, D137l Variant
Length = 174
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 65 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 117
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 118 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 150
SG + +++D+ S +Q + K V V G G G +
Sbjct: 78 MSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGIN 113
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 32 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 88
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 89 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 138
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATSDGFFYRNQK 147
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 76 NLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY-----FSGEILHSMDYKS 130
LE+ D+++V S G Y AV A A P G F G ++ KS
Sbjct: 90 TLEREGDLFKVTTSQGNA--YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVY-YAVKS 146
Query: 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
+ + KRVL+VG G+S D A++ + ++ RR
Sbjct: 147 KAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRR 184
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 32 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 88
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 89 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 138
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATSDGFFYRNQK 147
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|2HXR|A Chain A, Structure Of The Ligand Binding Domain Of E. Coli Cynr, A
Transcriptional Regulator Controlling Cyanate Metabolism
pdb|2HXR|B Chain B, Structure Of The Ligand Binding Domain Of E. Coli Cynr, A
Transcriptional Regulator Controlling Cyanate Metabolism
pdb|3HFU|A Chain A, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
pdb|3HFU|B Chain B, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
pdb|3HFU|C Chain C, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
pdb|3HFU|D Chain D, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
Length = 238
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 79 QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 122
QY EL GK+ +D + G+ R+A P ++ YF G +
Sbjct: 5 QYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPL 48
>pdb|2WHM|A Chain A, Cellvibrio Japonicus Man26a E121a And E320g Double Mutant
In Complex With Mannobiose
Length = 385
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 31 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 335 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 373
>pdb|1R7O|A Chain A, Crystal Structure Of Apo-mannanase 26a From Psudomonas
Cellulosa
Length = 395
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 31 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 345 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 383
>pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 376
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 31 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 328 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 366
>pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From Pseudomonas
Cellulosa
Length = 385
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 31 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 335 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 373
>pdb|1ODZ|A Chain A, Expansion Of The Glycosynthase Repertoire To Produce
Defined Manno-oligosaccharides
pdb|1ODZ|B Chain B, Expansion Of The Glycosynthase Repertoire To Produce
Defined Manno-oligosaccharides
Length = 386
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 31 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 336 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 374
>pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 383
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 31 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 335 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 373
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112
D ++ + K + Y + V +E D + V+ + K D + + G +R
Sbjct: 71 DMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGV 130
Query: 113 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR---- 168
F+G + +N+ V V+G G+S + A S +S KVY RR
Sbjct: 131 PGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK 190
Query: 169 GYHYYPKFIDGKPTPQWML 187
Y + + KP +++L
Sbjct: 191 AQPIYVETVKKKPNVEFVL 209
>pdb|2GSW|A Chain A, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
pdb|2GSW|B Chain B, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
pdb|2GSW|C Chain C, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
pdb|2GSW|D Chain D, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
Length = 182
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 65 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 117
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 118 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 150
SG + +++D+ S +Q + K V V G G G +
Sbjct: 78 XSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGIN 113
>pdb|1NNI|1 Chain 1, Azobenzene Reductase From Bacillus Subtilis
Length = 174
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 65 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 117
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 118 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 150
SG + +++D+ S +Q + K V V G G G +
Sbjct: 78 XSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGIN 113
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 36 YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW---------EV 86
+P+ + +Y + + M + S + VY H++ ++ + + +D W V
Sbjct: 78 FPVKKSEALYIHGTAMASLIASRYGIYGVYPHALISSRRVIPDGVQDSWIRAIESIMSNV 137
Query: 87 ELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGN 146
L+ G++K I + G + VA ++ E+L M N R++V GN
Sbjct: 138 FLAPGEEK---IINISGGQKGVASASVWT-----ELLSRMGRN------NDRLIVAAVGN 183
Query: 147 SGCDI 151
G DI
Sbjct: 184 DGADI 188
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 32 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 88
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 89 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 138
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATCDGFFYRNQK 147
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 32 QVPDYPMPDNYPVYPNH---SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 88
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 89 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 138
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATCDGFFYRNQK 147
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112
D ++ + K + Y + V +E D + V+ + K D + + G +R
Sbjct: 71 DMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGV 130
Query: 113 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR---- 168
F+G + +N+ V V+G G+S + A S +S KVY RR
Sbjct: 131 PGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK 190
Query: 169 GYHYYPKFIDGKPTPQWML 187
Y + + KP +++L
Sbjct: 191 AQPIYVETVKKKPNVEFVL 209
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 32 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 88
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 89 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 138
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSASATCDGFFYRNQK 147
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 246 ILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFI--- 302
ILPK K + +V F D T DT++YA G ++ E L + + I
Sbjct: 284 ILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIAD 343
Query: 303 HIAPRNLDNIFFFGFV 318
H++ N+ +IF G V
Sbjct: 344 HLSCTNIPSIFAVGDV 359
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGC 149
IL D+ + +++ RVL+VG G GC
Sbjct: 17 ILRGFDFDGQEALKDSRVLIVGLGGLGC 44
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 32 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYN--HSIFNTEVINLEQYEDIWEVELS 89
Q+ +NYP + + ++++ + H E I L+ + + ++L
Sbjct: 42 QITSSSEIENYPGVAQVXDGISFXAPWSEQCXRFGLKHEXVGVEQI-LKNSDGSFTIKLE 100
Query: 90 NGKKKKYDFIAVCNGAQRVARYPNYSGY-----FSGEILHSMDYKSPDQIRNKRVLVVGA 144
GK + + VC G+ P +G+ F G+ + + +NK V V+G
Sbjct: 101 GGKTELAKAVIVCTGSA-----PKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGG 155
Query: 145 GNSGCDIAVDASHHSEKVYHSTRR 168
G++ + A+ ++ K+Y RR
Sbjct: 156 GDTALEEALYLANICSKIYLIHRR 179
>pdb|3GFQ|A Chain A, Structure Of Yhda, K109l Variant
pdb|3GFQ|B Chain B, Structure Of Yhda, K109l Variant
pdb|3GFQ|C Chain C, Structure Of Yhda, K109l Variant
pdb|3GFQ|D Chain D, Structure Of Yhda, K109l Variant
Length = 174
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 65 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 117
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 118 FSGEILHSMDYKSPDQIRNK 137
SG + +++D+ S +Q + K
Sbjct: 78 MSGALKNALDFLSSEQFKYK 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,023,031
Number of Sequences: 62578
Number of extensions: 647224
Number of successful extensions: 1525
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 77
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)