Query psy2343
Match_columns 396
No_of_seqs 252 out of 2618
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 22:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 2.9E-79 6.2E-84 602.6 15.0 384 1-395 32-446 (531)
2 PLN02172 flavin-containing mon 100.0 1.3E-59 2.7E-64 457.9 28.0 327 1-395 41-403 (461)
3 KOG1399|consensus 100.0 9E-52 2E-56 395.2 20.2 325 1-394 37-385 (448)
4 COG2072 TrkA Predicted flavopr 100.0 3.8E-38 8.3E-43 306.0 28.8 341 1-347 40-418 (443)
5 PF13738 Pyr_redox_3: Pyridine 100.0 4E-28 8.7E-33 213.4 11.0 162 1-171 29-202 (203)
6 TIGR01292 TRX_reduct thioredox 99.9 2.3E-25 4.9E-30 207.8 22.2 229 46-341 54-298 (300)
7 COG0492 TrxB Thioredoxin reduc 99.9 1.3E-24 2.8E-29 199.8 20.1 233 39-338 48-295 (305)
8 PRK10262 thioredoxin reductase 99.9 4.7E-24 1E-28 200.9 19.1 235 45-342 59-313 (321)
9 PRK15317 alkyl hydroperoxide r 99.9 2.7E-23 5.9E-28 207.4 21.3 236 45-346 262-514 (517)
10 TIGR03385 CoA_CoA_reduc CoA-di 99.9 4.2E-23 9.1E-28 201.9 17.4 237 48-342 42-304 (427)
11 PRK04965 NADH:flavorubredoxin 99.9 8.7E-23 1.9E-27 196.4 17.9 233 47-343 55-303 (377)
12 TIGR03140 AhpF alkyl hydropero 99.9 1.9E-22 4.1E-27 201.1 19.8 231 46-342 264-511 (515)
13 TIGR02374 nitri_red_nirB nitri 99.9 8.9E-23 1.9E-27 212.0 17.3 234 48-343 53-302 (785)
14 KOG0404|consensus 99.9 1.3E-22 2.9E-27 170.5 14.6 227 41-320 59-294 (322)
15 PLN02507 glutathione reductase 99.9 1.1E-22 2.5E-27 201.4 16.2 201 81-342 151-363 (499)
16 PRK13512 coenzyme A disulfide 99.9 4.2E-22 9E-27 195.1 19.0 233 48-342 56-312 (438)
17 PRK09564 coenzyme A disulfide 99.9 2.5E-22 5.3E-27 197.6 17.2 239 46-343 53-318 (444)
18 PRK14989 nitrite reductase sub 99.9 3.6E-22 7.8E-27 207.4 17.7 235 48-343 58-311 (847)
19 COG1252 Ndh NADH dehydrogenase 99.9 2.1E-22 4.5E-27 189.5 13.9 240 44-345 52-333 (405)
20 PRK05249 soluble pyridine nucl 99.9 1.2E-21 2.5E-26 193.7 19.6 225 55-342 100-335 (461)
21 PRK14727 putative mercuric red 99.9 8.4E-22 1.8E-26 195.0 18.1 202 81-342 134-346 (479)
22 PTZ00318 NADH dehydrogenase-li 99.9 3.2E-22 7E-27 195.0 14.9 237 47-344 60-348 (424)
23 TIGR01421 gluta_reduc_1 glutat 99.9 2.2E-21 4.7E-26 190.5 18.2 196 85-342 120-328 (450)
24 PRK06416 dihydrolipoamide dehy 99.9 3.3E-21 7.2E-26 190.4 19.6 270 4-343 37-335 (462)
25 PRK09754 phenylpropionate diox 99.9 1.3E-21 2.9E-26 189.3 15.7 223 60-343 69-310 (396)
26 PRK14694 putative mercuric red 99.9 7.9E-21 1.7E-25 187.7 19.2 235 47-342 82-335 (468)
27 TIGR03143 AhpF_homolog putativ 99.9 2E-20 4.3E-25 188.0 21.5 228 46-340 57-305 (555)
28 PRK12831 putative oxidoreducta 99.9 6.3E-21 1.4E-25 187.4 16.7 242 49-343 191-460 (464)
29 PRK06116 glutathione reductase 99.9 1.8E-20 4E-25 184.4 20.0 220 55-342 99-328 (450)
30 TIGR01424 gluta_reduc_2 glutat 99.9 2.5E-20 5.5E-25 183.0 20.8 226 50-342 91-326 (446)
31 PRK07846 mycothione reductase; 99.9 2.3E-20 4.9E-25 183.2 19.7 276 3-342 31-325 (451)
32 PRK07845 flavoprotein disulfid 99.9 3.6E-20 7.7E-25 182.8 20.9 228 54-342 97-337 (466)
33 TIGR03169 Nterm_to_SelD pyridi 99.9 6.3E-21 1.4E-25 182.8 14.4 234 47-344 52-311 (364)
34 PRK06292 dihydrolipoamide dehy 99.9 1.7E-20 3.7E-25 185.3 17.7 271 3-342 35-331 (460)
35 TIGR01316 gltA glutamate synth 99.9 2.8E-20 6.1E-25 182.4 18.6 225 48-342 182-448 (449)
36 PRK13748 putative mercuric red 99.8 4E-20 8.6E-25 187.1 19.9 273 3-342 130-428 (561)
37 COG1249 Lpd Pyruvate/2-oxoglut 99.8 2.4E-20 5.3E-25 179.9 17.0 275 4-341 38-334 (454)
38 TIGR02053 MerA mercuric reduct 99.8 1.4E-20 3.1E-25 185.8 14.9 200 84-342 116-329 (463)
39 PF13434 K_oxygenase: L-lysine 99.8 1.4E-21 3E-26 183.7 6.3 124 44-171 90-227 (341)
40 COG3486 IucD Lysine/ornithine 99.8 2E-19 4.4E-24 164.9 19.5 282 44-347 93-418 (436)
41 PRK06370 mercuric reductase; V 99.8 1.6E-19 3.5E-24 178.3 20.0 199 85-342 124-334 (463)
42 KOG0405|consensus 99.8 1.4E-19 3E-24 161.8 17.4 275 4-341 54-349 (478)
43 PLN02546 glutathione reductase 99.8 1.1E-19 2.5E-24 181.1 17.7 196 85-342 207-413 (558)
44 PRK07818 dihydrolipoamide dehy 99.8 2.7E-19 5.8E-24 176.8 19.8 202 81-342 119-336 (466)
45 PRK11749 dihydropyrimidine deh 99.8 9.3E-20 2E-24 179.6 16.2 229 45-344 186-452 (457)
46 PTZ00052 thioredoxin reductase 99.8 7E-20 1.5E-24 181.7 14.3 234 46-342 88-341 (499)
47 PRK06327 dihydrolipoamide dehy 99.8 4.7E-19 1E-23 175.4 19.5 215 71-343 119-348 (475)
48 TIGR01350 lipoamide_DH dihydro 99.8 4.7E-19 1E-23 175.1 19.3 204 81-343 116-333 (461)
49 PRK09853 putative selenate red 99.8 3.5E-19 7.7E-24 184.4 18.9 248 44-347 584-845 (1019)
50 TIGR03452 mycothione_red mycot 99.8 1.7E-19 3.6E-24 177.2 15.4 204 81-342 117-328 (452)
51 PRK12779 putative bifunctional 99.8 5.1E-19 1.1E-23 185.7 19.8 251 44-347 351-630 (944)
52 PTZ00058 glutathione reductase 99.8 5.6E-19 1.2E-23 176.1 19.1 192 89-342 196-432 (561)
53 PRK08010 pyridine nucleotide-d 99.8 1.4E-18 3E-23 170.7 19.9 202 81-342 104-317 (441)
54 PRK12814 putative NADPH-depend 99.8 6.2E-19 1.3E-23 180.0 18.0 246 45-344 239-501 (652)
55 KOG1336|consensus 99.8 6E-19 1.3E-23 165.0 15.8 228 49-339 127-380 (478)
56 TIGR01438 TGR thioredoxin and 99.8 5.1E-19 1.1E-23 174.8 16.3 202 81-342 127-344 (484)
57 PRK12778 putative bifunctional 99.8 9.8E-19 2.1E-23 181.9 17.8 240 49-343 481-749 (752)
58 TIGR01423 trypano_reduc trypan 99.8 1.3E-18 2.8E-23 171.6 17.7 190 92-342 148-351 (486)
59 PRK06467 dihydrolipoamide dehy 99.8 3E-18 6.4E-23 169.3 19.5 203 81-342 120-337 (471)
60 PRK05976 dihydrolipoamide dehy 99.8 3.6E-18 7.9E-23 169.1 20.1 222 59-342 102-343 (472)
61 PRK06912 acoL dihydrolipoamide 99.8 4.7E-18 1E-22 167.5 19.8 204 81-342 117-330 (458)
62 PTZ00153 lipoamide dehydrogena 99.8 3.8E-18 8.1E-23 172.4 19.3 239 47-342 214-495 (659)
63 PRK06115 dihydrolipoamide dehy 99.8 6E-18 1.3E-22 167.0 19.7 203 81-343 120-339 (466)
64 PRK07251 pyridine nucleotide-d 99.8 9.7E-18 2.1E-22 164.6 19.2 192 92-342 115-316 (438)
65 TIGR03315 Se_ygfK putative sel 99.8 2.4E-17 5.2E-22 171.7 17.6 242 49-346 587-842 (1012)
66 PRK12775 putative trifunctiona 99.8 3.4E-17 7.4E-22 173.5 19.0 250 42-344 473-755 (1006)
67 PRK12770 putative glutamate sy 99.7 2.4E-17 5.2E-22 157.1 15.8 232 48-343 68-349 (352)
68 TIGR01318 gltD_gamma_fam gluta 99.7 3.7E-17 8E-22 161.0 17.5 242 48-343 190-465 (467)
69 KOG2495|consensus 99.7 2.8E-17 6.1E-22 151.3 14.3 267 21-346 80-399 (491)
70 PRK12769 putative oxidoreducta 99.7 1.3E-16 2.8E-21 163.7 19.9 243 48-344 376-652 (654)
71 COG1251 NirB NAD(P)H-nitrite r 99.7 1.5E-17 3.3E-22 162.7 11.6 237 48-344 58-308 (793)
72 PRK12810 gltD glutamate syntha 99.7 1.4E-16 3.1E-21 157.4 17.2 241 44-344 188-465 (471)
73 COG3634 AhpF Alkyl hydroperoxi 99.7 2.1E-16 4.6E-21 141.6 15.4 211 47-321 264-491 (520)
74 PRK12809 putative oxidoreducta 99.7 3.9E-16 8.6E-21 159.4 18.9 240 49-343 360-634 (639)
75 PRK12771 putative glutamate sy 99.7 6.3E-16 1.4E-20 156.1 15.8 226 49-344 187-444 (564)
76 PRK13984 putative oxidoreducta 99.7 2E-15 4.3E-20 153.9 15.8 240 48-343 332-601 (604)
77 TIGR01317 GOGAT_sm_gam glutama 99.6 7.4E-15 1.6E-19 145.3 18.2 264 43-344 187-479 (485)
78 PLN02852 ferredoxin-NADP+ redu 99.6 5.9E-14 1.3E-18 137.3 17.0 115 43-170 73-221 (491)
79 TIGR01372 soxA sarcosine oxida 99.5 4.8E-13 1E-17 142.8 21.4 225 49-344 215-472 (985)
80 KOG4716|consensus 99.5 3.5E-13 7.6E-18 120.7 15.1 238 47-341 105-364 (503)
81 KOG1335|consensus 99.5 3E-13 6.5E-18 123.1 12.6 280 1-343 70-378 (506)
82 COG0446 HcaD Uncharacterized N 99.5 6.6E-13 1.4E-17 129.3 13.8 221 60-342 64-310 (415)
83 KOG0399|consensus 99.4 6.6E-13 1.4E-17 134.1 6.5 283 1-348 1816-2128(2142)
84 KOG1346|consensus 99.3 4E-12 8.7E-17 116.8 6.1 217 68-343 274-520 (659)
85 COG4529 Uncharacterized protei 99.2 7.3E-10 1.6E-14 105.3 17.0 131 42-176 93-236 (474)
86 PRK09897 hypothetical protein; 99.2 1.5E-09 3.2E-14 107.8 17.7 123 43-171 94-247 (534)
87 COG0493 GltD NADPH-dependent g 99.0 1.1E-09 2.4E-14 106.4 10.4 250 43-340 167-447 (457)
88 KOG2755|consensus 98.9 4.5E-09 9.7E-14 91.5 8.8 83 81-169 78-165 (334)
89 PRK06567 putative bifunctional 98.9 9E-09 1.9E-13 106.6 11.8 62 94-157 496-571 (1028)
90 PTZ00188 adrenodoxin reductase 98.9 1.5E-07 3.2E-12 91.4 18.5 36 135-170 196-252 (506)
91 KOG1800|consensus 98.8 9.9E-08 2.1E-12 87.6 14.6 115 43-170 67-215 (468)
92 PF13454 NAD_binding_9: FAD-NA 98.6 2.5E-07 5.5E-12 77.4 9.3 96 5-105 38-155 (156)
93 PF00070 Pyr_redox: Pyridine n 98.2 5.6E-07 1.2E-11 66.1 1.1 33 138-170 1-33 (80)
94 PF07992 Pyr_redox_2: Pyridine 98.2 1.7E-06 3.6E-11 75.5 4.4 80 59-143 68-159 (201)
95 TIGR01292 TRX_reduct thioredox 98.0 1.3E-05 2.8E-10 74.5 7.6 32 138-169 2-33 (300)
96 COG1252 Ndh NADH dehydrogenase 98.0 2.5E-05 5.3E-10 74.6 8.7 109 136-287 3-117 (405)
97 PTZ00318 NADH dehydrogenase-li 97.9 4.9E-05 1.1E-09 74.5 9.7 37 135-171 9-45 (424)
98 PRK09754 phenylpropionate diox 97.8 0.00012 2.6E-09 71.1 9.8 35 135-169 2-38 (396)
99 TIGR03169 Nterm_to_SelD pyridi 97.8 5.1E-05 1.1E-09 72.8 6.7 107 138-287 1-113 (364)
100 PRK09564 coenzyme A disulfide 97.7 5.5E-05 1.2E-09 74.6 6.6 34 137-170 1-36 (444)
101 COG2081 Predicted flavoprotein 97.7 0.0001 2.2E-09 69.1 6.7 138 137-280 4-166 (408)
102 KOG3851|consensus 97.6 0.00018 3.9E-09 65.1 7.1 106 237-344 242-361 (446)
103 PRK12779 putative bifunctional 97.5 0.00014 3E-09 77.7 6.1 36 134-169 304-339 (944)
104 COG2081 Predicted flavoprotein 97.5 0.00055 1.2E-08 64.3 8.9 63 47-111 109-171 (408)
105 PRK14989 nitrite reductase sub 97.5 0.00027 5.8E-09 74.8 7.6 35 136-170 3-41 (847)
106 PRK06116 glutathione reductase 97.4 0.00068 1.5E-08 67.0 9.5 31 138-168 6-36 (450)
107 PRK09853 putative selenate red 97.4 0.00027 5.8E-09 74.9 6.6 36 134-169 537-572 (1019)
108 TIGR00292 thiazole biosynthesi 97.4 0.0012 2.7E-08 59.7 10.1 36 134-169 19-54 (254)
109 PRK13512 coenzyme A disulfide 97.4 0.0009 2E-08 65.9 9.6 34 137-170 2-37 (438)
110 TIGR01424 gluta_reduc_2 glutat 97.4 0.0011 2.3E-08 65.5 9.8 31 138-168 4-34 (446)
111 PRK15317 alkyl hydroperoxide r 97.3 0.00075 1.6E-08 67.9 8.4 33 136-168 211-243 (517)
112 PLN02172 flavin-containing mon 97.3 0.0021 4.5E-08 63.6 11.1 36 134-169 8-43 (461)
113 PRK06567 putative bifunctional 97.3 0.00058 1.3E-08 71.8 7.5 37 133-169 380-416 (1028)
114 PRK04176 ribulose-1,5-biphosph 97.3 0.0027 5.8E-08 57.7 11.0 37 133-169 22-58 (257)
115 TIGR01789 lycopene_cycl lycope 97.3 0.00099 2.2E-08 64.0 8.5 129 138-281 1-138 (370)
116 PF01134 GIDA: Glucose inhibit 97.3 0.0001 2.2E-09 70.1 1.5 30 138-167 1-30 (392)
117 PLN02852 ferredoxin-NADP+ redu 97.3 0.00036 7.8E-09 69.0 5.3 36 134-169 24-61 (491)
118 TIGR02374 nitri_red_nirB nitri 97.2 0.00059 1.3E-08 72.0 6.9 107 139-287 1-114 (785)
119 PRK07251 pyridine nucleotide-d 97.2 0.00079 1.7E-08 66.3 7.3 32 138-169 5-36 (438)
120 PLN02661 Putative thiazole syn 97.2 0.0028 6.1E-08 59.5 10.4 46 124-169 80-126 (357)
121 PRK07236 hypothetical protein; 97.2 0.0015 3.2E-08 63.2 8.9 36 135-170 5-40 (386)
122 PF03486 HI0933_like: HI0933-l 97.2 0.0012 2.7E-08 63.9 8.0 62 47-110 107-169 (409)
123 PRK06847 hypothetical protein; 97.2 0.003 6.5E-08 60.7 10.6 62 46-109 104-165 (375)
124 PF13454 NAD_binding_9: FAD-NA 97.2 0.0043 9.4E-08 51.7 10.1 31 140-170 1-36 (156)
125 COG2072 TrkA Predicted flavopr 97.1 0.0017 3.6E-08 63.9 8.4 34 136-169 8-42 (443)
126 TIGR01421 gluta_reduc_1 glutat 97.1 0.0017 3.6E-08 64.2 8.5 31 138-168 4-34 (450)
127 TIGR03140 AhpF alkyl hydropero 97.1 0.0016 3.5E-08 65.4 7.9 33 135-167 211-243 (515)
128 COG1635 THI4 Ribulose 1,5-bisp 97.1 0.004 8.8E-08 53.7 8.8 42 128-169 22-63 (262)
129 TIGR03862 flavo_PP4765 unchara 97.0 0.0028 6.1E-08 60.5 8.7 64 44-111 78-145 (376)
130 PRK06370 mercuric reductase; V 97.0 0.003 6.4E-08 62.7 9.3 32 137-168 6-37 (463)
131 PRK06467 dihydrolipoamide dehy 97.0 0.0018 3.8E-08 64.4 7.7 33 137-169 5-37 (471)
132 TIGR01470 cysG_Nterm siroheme 97.0 0.0011 2.3E-08 58.0 5.1 36 133-168 6-41 (205)
133 PRK05976 dihydrolipoamide dehy 97.0 0.0027 5.9E-08 63.1 8.5 32 137-168 5-36 (472)
134 TIGR02053 MerA mercuric reduct 97.0 0.0048 1E-07 61.2 10.1 31 138-168 2-32 (463)
135 PRK12778 putative bifunctional 97.0 0.00062 1.4E-08 71.6 3.9 36 134-169 429-464 (752)
136 KOG1399|consensus 97.0 0.0089 1.9E-07 58.4 11.5 39 136-174 6-48 (448)
137 PRK10262 thioredoxin reductase 97.0 0.0024 5.2E-08 60.1 7.4 33 135-167 5-37 (321)
138 KOG2755|consensus 96.9 0.0021 4.5E-08 56.8 6.2 32 138-169 1-34 (334)
139 PF07992 Pyr_redox_2: Pyridine 96.9 0.00015 3.2E-09 63.1 -0.8 32 138-169 1-32 (201)
140 PRK11749 dihydropyrimidine deh 96.9 0.00068 1.5E-08 67.1 3.8 37 133-169 137-173 (457)
141 PTZ00188 adrenodoxin reductase 96.9 0.0013 2.8E-08 64.5 5.4 35 135-169 38-73 (506)
142 TIGR01316 gltA glutamate synth 96.9 0.00085 1.8E-08 66.2 4.3 37 133-169 130-166 (449)
143 PF13738 Pyr_redox_3: Pyridine 96.9 0.0055 1.2E-07 53.3 9.0 30 140-169 1-31 (203)
144 PRK14694 putative mercuric red 96.9 0.0097 2.1E-07 59.1 11.8 31 138-168 8-38 (468)
145 COG4529 Uncharacterized protei 96.9 0.0024 5.2E-08 61.5 6.9 33 137-169 2-37 (474)
146 PRK06847 hypothetical protein; 96.9 0.0051 1.1E-07 59.1 9.4 35 136-170 4-38 (375)
147 PLN02546 glutathione reductase 96.9 0.0047 1E-07 62.4 9.4 30 138-167 81-110 (558)
148 PRK06753 hypothetical protein; 96.9 0.0055 1.2E-07 58.9 9.5 33 138-170 2-34 (373)
149 PRK06718 precorrin-2 dehydroge 96.9 0.0022 4.8E-08 55.9 5.8 36 133-168 7-42 (202)
150 PLN02463 lycopene beta cyclase 96.8 0.0032 6.8E-08 61.9 7.4 33 138-170 30-62 (447)
151 TIGR03315 Se_ygfK putative sel 96.8 0.0022 4.8E-08 68.4 6.7 35 135-169 536-570 (1012)
152 KOG3851|consensus 96.8 0.0011 2.4E-08 60.2 3.7 38 250-287 112-151 (446)
153 PRK12831 putative oxidoreducta 96.8 0.0014 3.1E-08 64.9 4.9 37 133-169 137-173 (464)
154 PTZ00058 glutathione reductase 96.8 0.01 2.2E-07 60.1 10.7 31 138-168 50-80 (561)
155 PF01266 DAO: FAD dependent ox 96.8 0.0039 8.4E-08 59.1 7.4 59 46-107 144-203 (358)
156 PRK01438 murD UDP-N-acetylmura 96.8 0.0018 3.8E-08 64.7 5.0 36 134-169 14-49 (480)
157 PRK12775 putative trifunctiona 96.7 0.0015 3.4E-08 70.4 4.8 35 135-169 429-463 (1006)
158 PRK06834 hypothetical protein; 96.7 0.0098 2.1E-07 59.4 10.0 59 47-107 98-156 (488)
159 PRK12770 putative glutamate sy 96.7 0.0029 6.3E-08 60.4 5.9 36 135-170 17-52 (352)
160 TIGR03219 salicylate_mono sali 96.7 0.0062 1.4E-07 59.5 8.0 33 138-170 2-35 (414)
161 TIGR00275 flavoprotein, HI0933 96.7 0.01 2.2E-07 57.7 9.4 61 47-110 103-163 (400)
162 PRK05192 tRNA uridine 5-carbox 96.6 0.0098 2.1E-07 60.1 9.1 32 138-169 6-37 (618)
163 COG0492 TrxB Thioredoxin reduc 96.6 0.022 4.9E-07 52.9 10.9 30 138-167 5-35 (305)
164 TIGR03197 MnmC_Cterm tRNA U-34 96.6 0.0059 1.3E-07 58.9 7.4 60 45-107 131-190 (381)
165 COG1148 HdrA Heterodisulfide r 96.5 0.0073 1.6E-07 58.0 7.2 35 135-169 123-157 (622)
166 PRK05562 precorrin-2 dehydroge 96.5 0.0047 1E-07 54.3 5.6 36 133-168 22-57 (223)
167 TIGR01318 gltD_gamma_fam gluta 96.5 0.002 4.2E-08 64.0 3.5 36 134-169 139-174 (467)
168 COG2509 Uncharacterized FAD-de 96.5 0.0084 1.8E-07 57.3 7.4 58 48-107 172-230 (486)
169 PF00743 FMO-like: Flavin-bind 96.5 0.005 1.1E-07 61.8 6.3 33 137-169 2-34 (531)
170 PRK12809 putative oxidoreducta 96.4 0.0027 5.9E-08 65.5 3.7 35 135-169 309-343 (639)
171 PRK06292 dihydrolipoamide dehy 96.3 0.024 5.2E-07 56.2 9.9 31 138-168 5-35 (460)
172 TIGR01790 carotene-cycl lycope 96.3 0.016 3.5E-07 56.0 8.5 33 138-170 1-33 (388)
173 TIGR01350 lipoamide_DH dihydro 96.3 0.041 8.8E-07 54.6 11.4 91 49-147 211-310 (461)
174 PRK05868 hypothetical protein; 96.3 0.019 4E-07 55.3 8.6 34 137-170 2-35 (372)
175 KOG2311|consensus 96.2 0.032 6.9E-07 53.7 9.4 31 138-168 30-60 (679)
176 PRK09897 hypothetical protein; 96.2 0.013 2.9E-07 58.7 7.3 33 137-169 2-36 (534)
177 PF03486 HI0933_like: HI0933-l 96.2 0.03 6.4E-07 54.4 9.5 32 138-169 2-33 (409)
178 TIGR03143 AhpF_homolog putativ 96.2 0.012 2.6E-07 59.7 7.1 33 137-169 5-37 (555)
179 PRK12814 putative NADPH-depend 96.2 0.0046 9.9E-08 64.0 4.0 36 134-169 191-226 (652)
180 PRK07333 2-octaprenyl-6-methox 96.1 0.022 4.7E-07 55.4 8.1 60 46-107 108-167 (403)
181 COG0445 GidA Flavin-dependent 96.1 0.036 7.9E-07 54.3 9.3 33 137-169 5-37 (621)
182 PF05834 Lycopene_cycl: Lycope 96.1 0.01 2.2E-07 57.1 5.7 33 138-170 1-35 (374)
183 PF13241 NAD_binding_7: Putati 96.0 0.0057 1.2E-07 47.1 3.0 36 133-168 4-39 (103)
184 PRK08773 2-octaprenyl-3-methyl 96.0 0.026 5.7E-07 54.6 8.1 60 46-107 110-169 (392)
185 PRK12769 putative oxidoreducta 96.0 0.0043 9.4E-08 64.3 2.7 36 134-169 325-360 (654)
186 TIGR00136 gidA glucose-inhibit 96.0 0.023 4.9E-07 57.4 7.6 32 138-169 2-33 (617)
187 TIGR01317 GOGAT_sm_gam glutama 96.0 0.0065 1.4E-07 60.6 3.8 36 134-169 141-176 (485)
188 cd01080 NAD_bind_m-THF_DH_Cycl 95.9 0.026 5.7E-07 47.5 6.8 36 133-168 41-77 (168)
189 PRK07588 hypothetical protein; 95.9 0.022 4.7E-07 55.2 7.1 34 137-170 1-34 (391)
190 PRK12810 gltD glutamate syntha 95.9 0.056 1.2E-06 53.8 10.1 37 133-169 140-176 (471)
191 COG0579 Predicted dehydrogenas 95.9 0.019 4.2E-07 55.5 6.5 60 48-109 152-213 (429)
192 PRK11259 solA N-methyltryptoph 95.9 0.025 5.5E-07 54.3 7.5 62 45-109 145-206 (376)
193 PTZ00383 malate:quinone oxidor 95.9 0.023 5.1E-07 56.6 7.3 60 47-107 209-273 (497)
194 PRK04965 NADH:flavorubredoxin 95.9 0.034 7.3E-07 53.6 8.3 59 49-111 183-241 (377)
195 COG1648 CysG Siroheme synthase 95.9 0.013 2.8E-07 51.3 4.7 36 133-168 9-44 (210)
196 TIGR02032 GG-red-SF geranylger 95.8 0.037 8.1E-07 50.9 8.2 60 46-107 88-148 (295)
197 PLN02697 lycopene epsilon cycl 95.8 0.014 3E-07 58.5 5.4 33 137-169 109-141 (529)
198 PRK07190 hypothetical protein; 95.8 0.037 8E-07 55.2 8.4 59 47-107 107-165 (487)
199 TIGR02352 thiamin_ThiO glycine 95.8 0.053 1.1E-06 51.1 9.0 61 45-108 133-194 (337)
200 PRK11728 hydroxyglutarate oxid 95.8 0.041 8.8E-07 53.4 8.3 58 47-107 147-204 (393)
201 TIGR01377 soxA_mon sarcosine o 95.8 0.038 8.2E-07 53.2 8.1 59 46-107 142-200 (380)
202 PRK01747 mnmC bifunctional tRN 95.7 0.032 6.9E-07 58.1 7.9 60 45-107 404-463 (662)
203 PRK05329 anaerobic glycerol-3- 95.7 0.062 1.3E-06 52.4 9.1 31 139-169 218-253 (422)
204 KOG1336|consensus 95.6 0.044 9.5E-07 52.8 7.6 34 249-282 147-182 (478)
205 KOG2495|consensus 95.6 0.04 8.7E-07 52.4 7.2 41 133-173 52-92 (491)
206 PRK05714 2-octaprenyl-3-methyl 95.5 0.048 1E-06 53.1 7.9 59 47-107 110-168 (405)
207 PLN02463 lycopene beta cyclase 95.5 0.053 1.1E-06 53.4 8.1 59 46-107 111-169 (447)
208 PRK06416 dihydrolipoamide dehy 95.5 0.061 1.3E-06 53.4 8.7 61 49-113 213-276 (462)
209 COG1249 Lpd Pyruvate/2-oxoglut 95.5 0.058 1.3E-06 53.0 8.3 63 48-114 213-277 (454)
210 PRK06834 hypothetical protein; 95.5 0.053 1.2E-06 54.1 8.1 34 137-170 4-37 (488)
211 TIGR01984 UbiH 2-polyprenyl-6- 95.5 0.047 1E-06 52.6 7.5 60 46-107 102-162 (382)
212 PRK05714 2-octaprenyl-3-methyl 95.4 0.02 4.4E-07 55.6 4.9 32 138-169 4-35 (405)
213 TIGR02023 BchP-ChlP geranylger 95.4 0.095 2.1E-06 50.7 9.4 59 46-107 89-155 (388)
214 PRK08020 ubiF 2-octaprenyl-3-m 95.4 0.054 1.2E-06 52.4 7.7 60 46-107 109-169 (391)
215 PRK05249 soluble pyridine nucl 95.4 0.072 1.6E-06 52.8 8.7 60 49-112 216-275 (461)
216 PTZ00153 lipoamide dehydrogena 95.4 0.097 2.1E-06 54.0 9.8 31 138-168 118-148 (659)
217 PRK06719 precorrin-2 dehydroge 95.4 0.018 3.9E-07 48.0 3.7 34 133-166 10-43 (157)
218 PRK00711 D-amino acid dehydrog 95.4 0.07 1.5E-06 52.0 8.5 59 46-107 198-257 (416)
219 TIGR03219 salicylate_mono sali 95.3 0.035 7.6E-07 54.2 6.3 59 46-108 102-160 (414)
220 PRK07494 2-octaprenyl-6-methox 95.3 0.066 1.4E-06 51.7 8.1 60 46-107 108-167 (388)
221 PRK13984 putative oxidoreducta 95.3 0.013 2.9E-07 60.2 3.3 36 134-169 281-316 (604)
222 PRK12409 D-amino acid dehydrog 95.3 0.074 1.6E-06 51.8 8.4 58 48-107 196-258 (410)
223 PRK07333 2-octaprenyl-6-methox 95.3 0.024 5.3E-07 55.0 5.0 33 138-170 3-37 (403)
224 TIGR01988 Ubi-OHases Ubiquinon 95.3 0.058 1.3E-06 51.9 7.6 60 46-107 103-163 (385)
225 PRK10157 putative oxidoreducta 95.3 0.027 5.8E-07 55.3 5.2 32 138-169 7-38 (428)
226 COG0654 UbiH 2-polyprenyl-6-me 95.3 0.037 8.1E-07 53.5 6.2 32 137-168 3-34 (387)
227 PRK12771 putative glutamate sy 95.3 0.014 2.9E-07 59.6 3.2 37 133-169 134-170 (564)
228 TIGR03378 glycerol3P_GlpB glyc 95.2 0.11 2.3E-06 50.3 9.1 58 47-106 261-321 (419)
229 PRK07588 hypothetical protein; 95.2 0.062 1.3E-06 52.0 7.5 60 46-108 100-159 (391)
230 PRK06184 hypothetical protein; 95.1 0.076 1.7E-06 53.3 8.1 59 47-107 107-168 (502)
231 PRK10157 putative oxidoreducta 95.1 0.089 1.9E-06 51.7 8.3 59 47-107 106-164 (428)
232 TIGR03329 Phn_aa_oxid putative 95.1 0.073 1.6E-06 52.8 7.8 59 46-108 180-238 (460)
233 PLN02507 glutathione reductase 95.1 0.1 2.3E-06 52.2 8.9 61 48-112 243-303 (499)
234 PRK08244 hypothetical protein; 95.1 0.1 2.2E-06 52.3 8.8 60 46-107 97-159 (493)
235 PRK05257 malate:quinone oxidor 95.0 0.082 1.8E-06 52.8 7.9 59 47-107 181-246 (494)
236 TIGR01320 mal_quin_oxido malat 95.0 0.091 2E-06 52.4 8.0 59 47-107 176-240 (483)
237 PRK14192 bifunctional 5,10-met 95.0 0.08 1.7E-06 48.6 7.1 37 132-168 155-192 (283)
238 PRK07845 flavoprotein disulfid 95.0 0.11 2.4E-06 51.5 8.7 61 48-112 217-277 (466)
239 PRK06327 dihydrolipoamide dehy 94.9 0.42 9.2E-06 47.6 12.6 61 49-113 224-288 (475)
240 PRK13339 malate:quinone oxidor 94.8 0.098 2.1E-06 52.1 7.8 59 47-107 182-247 (497)
241 PRK07608 ubiquinone biosynthes 94.8 0.11 2.3E-06 50.2 7.9 58 47-107 109-167 (388)
242 PRK08163 salicylate hydroxylas 94.8 0.094 2E-06 50.8 7.4 62 46-109 106-168 (396)
243 PF13450 NAD_binding_8: NAD(P) 94.8 0.031 6.6E-07 39.4 2.9 29 141-169 1-29 (68)
244 PRK05335 tRNA (uracil-5-)-meth 94.7 0.03 6.5E-07 54.1 3.8 35 137-171 3-37 (436)
245 PF01593 Amino_oxidase: Flavin 94.7 0.076 1.6E-06 51.5 6.8 55 51-107 211-265 (450)
246 PRK14175 bifunctional 5,10-met 94.7 0.11 2.5E-06 47.5 7.1 37 133-169 155-192 (286)
247 TIGR00562 proto_IX_ox protopor 94.7 0.097 2.1E-06 51.8 7.4 56 50-106 223-278 (462)
248 PRK05732 2-octaprenyl-6-methox 94.6 0.12 2.6E-06 50.0 7.8 59 47-107 110-169 (395)
249 KOG2820|consensus 94.6 0.14 3E-06 47.4 7.4 77 35-113 132-218 (399)
250 PRK10637 cysG siroheme synthas 94.6 0.052 1.1E-06 53.6 5.1 35 133-167 9-43 (457)
251 COG0493 GltD NADPH-dependent g 94.6 0.024 5.2E-07 55.7 2.7 37 133-169 120-156 (457)
252 KOG0399|consensus 94.5 0.067 1.5E-06 56.6 5.8 37 133-169 1782-1818(2142)
253 PRK06183 mhpA 3-(3-hydroxyphen 94.5 0.13 2.7E-06 52.2 7.9 60 47-108 111-175 (538)
254 TIGR01790 carotene-cycl lycope 94.5 0.14 3E-06 49.5 7.9 59 46-107 82-141 (388)
255 KOG4716|consensus 94.5 0.17 3.8E-06 46.7 7.8 29 138-166 21-49 (503)
256 PF01488 Shikimate_DH: Shikima 94.5 0.054 1.2E-06 43.9 4.1 37 133-169 9-46 (135)
257 PRK11883 protoporphyrinogen ox 94.4 0.14 3.1E-06 50.4 8.0 54 51-105 220-273 (451)
258 PRK06753 hypothetical protein; 94.4 0.092 2E-06 50.4 6.5 58 46-107 95-152 (373)
259 COG3380 Predicted NAD/FAD-depe 94.4 0.27 5.9E-06 44.1 8.5 146 138-287 3-166 (331)
260 PF00670 AdoHcyase_NAD: S-aden 94.3 0.056 1.2E-06 44.9 3.9 37 133-169 20-56 (162)
261 PRK09126 hypothetical protein; 94.3 0.17 3.7E-06 48.9 8.0 59 47-107 108-167 (392)
262 PRK08010 pyridine nucleotide-d 94.3 0.18 3.9E-06 49.7 8.3 59 49-112 199-257 (441)
263 TIGR00137 gid_trmFO tRNA:m(5)U 94.3 0.041 8.9E-07 53.4 3.6 33 138-170 2-34 (433)
264 PRK06185 hypothetical protein; 94.2 0.17 3.6E-06 49.2 7.9 61 45-107 104-169 (407)
265 PRK07818 dihydrolipoamide dehy 94.2 0.22 4.7E-06 49.5 8.7 60 49-112 213-276 (466)
266 PRK11445 putative oxidoreducta 94.0 0.24 5.2E-06 47.2 8.3 60 46-108 96-158 (351)
267 TIGR01813 flavo_cyto_c flavocy 94.0 0.25 5.4E-06 48.6 8.7 61 46-108 127-193 (439)
268 KOG0404|consensus 94.0 0.38 8.2E-06 41.9 8.4 30 136-165 8-37 (322)
269 PF06039 Mqo: Malate:quinone o 93.9 0.11 2.5E-06 50.2 5.6 47 61-109 194-246 (488)
270 PRK14727 putative mercuric red 93.9 0.25 5.5E-06 49.2 8.5 60 48-112 227-286 (479)
271 PRK07364 2-octaprenyl-6-methox 93.9 0.18 4E-06 49.1 7.4 58 48-107 120-181 (415)
272 PRK08849 2-octaprenyl-3-methyl 93.8 0.21 4.5E-06 48.2 7.5 59 48-108 109-168 (384)
273 PRK06912 acoL dihydrolipoamide 93.8 0.32 7E-06 48.2 9.0 62 48-113 210-272 (458)
274 PRK08013 oxidoreductase; Provi 93.8 0.22 4.7E-06 48.4 7.6 60 46-107 108-168 (400)
275 KOG2614|consensus 93.8 0.55 1.2E-05 44.7 9.8 33 137-169 3-35 (420)
276 TIGR01372 soxA sarcosine oxida 93.8 0.29 6.2E-06 53.4 9.2 34 136-169 163-196 (985)
277 PF05834 Lycopene_cycl: Lycope 93.8 0.47 1E-05 45.6 9.8 58 46-106 84-141 (374)
278 PRK07846 mycothione reductase; 93.8 0.26 5.7E-06 48.7 8.2 60 49-113 207-266 (451)
279 PRK12416 protoporphyrinogen ox 93.7 0.23 4.9E-06 49.3 7.8 39 67-105 240-278 (463)
280 PRK10015 oxidoreductase; Provi 93.6 0.27 5.9E-06 48.2 8.1 59 47-107 106-164 (429)
281 PTZ00052 thioredoxin reductase 93.6 0.29 6.3E-06 49.1 8.4 61 49-113 222-282 (499)
282 PF13434 K_oxygenase: L-lysine 93.6 0.13 2.8E-06 48.8 5.5 38 68-105 296-339 (341)
283 TIGR03385 CoA_CoA_reduc CoA-di 93.6 0.25 5.4E-06 48.4 7.7 58 49-112 179-236 (427)
284 PRK06126 hypothetical protein; 93.6 0.25 5.4E-06 50.1 7.9 60 46-107 123-188 (545)
285 TIGR03364 HpnW_proposed FAD de 93.5 0.22 4.8E-06 47.6 7.2 60 46-112 142-202 (365)
286 TIGR03452 mycothione_red mycot 93.5 0.31 6.6E-06 48.3 8.2 60 49-113 210-269 (452)
287 PRK12266 glpD glycerol-3-phosp 93.5 0.29 6.3E-06 49.2 8.2 58 48-107 154-216 (508)
288 COG0373 HemA Glutamyl-tRNA red 93.5 0.2 4.3E-06 48.2 6.5 36 134-169 176-212 (414)
289 PLN02568 polyamine oxidase 93.5 0.29 6.2E-06 49.5 8.0 52 53-105 243-294 (539)
290 PRK13369 glycerol-3-phosphate 93.4 0.28 6.1E-06 49.2 7.9 59 47-107 153-215 (502)
291 PRK12409 D-amino acid dehydrog 93.4 0.08 1.7E-06 51.6 3.9 33 137-169 2-34 (410)
292 PRK07233 hypothetical protein; 93.4 0.26 5.5E-06 48.3 7.5 57 49-107 198-254 (434)
293 PRK08850 2-octaprenyl-6-methox 93.4 0.29 6.4E-06 47.6 7.8 58 48-107 110-168 (405)
294 cd05212 NAD_bind_m-THF_DH_Cycl 93.3 0.25 5.4E-06 40.2 6.0 36 133-168 25-61 (140)
295 TIGR01423 trypano_reduc trypan 93.3 0.36 7.8E-06 48.2 8.4 60 49-112 231-291 (486)
296 PLN02268 probable polyamine ox 93.3 0.21 4.5E-06 49.1 6.7 38 68-105 213-250 (435)
297 TIGR02485 CobZ_N-term precorri 93.2 0.38 8.3E-06 47.3 8.3 59 47-107 121-183 (432)
298 TIGR01438 TGR thioredoxin and 93.2 0.39 8.5E-06 47.9 8.4 60 49-112 220-282 (484)
299 KOG1346|consensus 93.2 0.17 3.6E-06 48.1 5.3 56 233-288 259-319 (659)
300 PF01494 FAD_binding_3: FAD bi 93.1 0.38 8.2E-06 45.3 8.0 59 47-107 109-172 (356)
301 PRK13748 putative mercuric red 93.0 0.39 8.5E-06 48.9 8.4 60 48-112 309-368 (561)
302 TIGR01373 soxB sarcosine oxida 93.0 0.13 2.7E-06 50.2 4.6 49 121-169 15-65 (407)
303 PF00070 Pyr_redox: Pyridine n 93.0 0.34 7.4E-06 35.0 5.8 42 48-91 39-80 (80)
304 KOG0405|consensus 92.9 0.41 8.9E-06 44.5 7.3 130 136-288 20-172 (478)
305 PRK06115 dihydrolipoamide dehy 92.9 0.43 9.3E-06 47.4 8.3 60 49-112 215-279 (466)
306 TIGR02730 carot_isom carotene 92.8 0.39 8.5E-06 48.1 7.9 56 49-106 229-285 (493)
307 TIGR02734 crtI_fam phytoene de 92.8 0.43 9.4E-06 47.9 8.3 55 49-105 219-274 (502)
308 PRK06617 2-octaprenyl-6-methox 92.8 0.39 8.4E-06 46.2 7.5 60 46-108 101-161 (374)
309 PRK04176 ribulose-1,5-biphosph 92.7 0.33 7.2E-06 44.0 6.6 59 47-107 102-173 (257)
310 COG0562 Glf UDP-galactopyranos 92.6 0.15 3.2E-06 46.9 4.0 33 138-170 3-35 (374)
311 PRK08132 FAD-dependent oxidore 92.6 0.53 1.2E-05 47.8 8.6 59 47-107 123-185 (547)
312 PRK11259 solA N-methyltryptoph 92.5 0.12 2.6E-06 49.6 3.6 32 138-169 5-36 (376)
313 PLN02697 lycopene epsilon cycl 92.4 0.49 1.1E-05 47.6 7.9 59 46-107 189-248 (529)
314 cd05191 NAD_bind_amino_acid_DH 92.4 0.2 4.4E-06 36.9 4.0 36 132-167 19-55 (86)
315 PF01266 DAO: FAD dependent ox 92.3 0.13 2.8E-06 48.6 3.6 31 138-168 1-31 (358)
316 PF01494 FAD_binding_3: FAD bi 92.3 0.13 2.8E-06 48.5 3.5 33 138-170 3-35 (356)
317 PLN02676 polyamine oxidase 92.2 0.46 1E-05 47.4 7.5 40 66-105 245-284 (487)
318 TIGR01377 soxA_mon sarcosine o 92.2 0.14 3E-06 49.3 3.7 32 138-169 2-33 (380)
319 TIGR03467 HpnE squalene-associ 92.2 0.36 7.8E-06 46.9 6.6 53 52-106 200-253 (419)
320 PRK14191 bifunctional 5,10-met 92.2 0.51 1.1E-05 43.2 7.0 36 133-168 154-190 (285)
321 PRK07045 putative monooxygenas 92.1 0.57 1.2E-05 45.2 7.8 60 46-107 103-165 (388)
322 PRK14189 bifunctional 5,10-met 92.1 0.4 8.7E-06 43.9 6.2 36 133-168 155-191 (285)
323 PRK11883 protoporphyrinogen ox 92.1 0.16 3.4E-06 50.1 4.0 33 137-169 1-35 (451)
324 KOG0029|consensus 92.0 0.2 4.2E-06 50.0 4.5 37 133-169 12-48 (501)
325 COG0654 UbiH 2-polyprenyl-6-me 92.0 0.59 1.3E-05 45.2 7.7 60 46-107 101-162 (387)
326 COG0771 MurD UDP-N-acetylmuram 91.8 0.33 7.1E-06 47.4 5.6 37 133-169 4-40 (448)
327 PRK05868 hypothetical protein; 91.7 0.62 1.4E-05 44.8 7.5 58 48-108 104-161 (372)
328 COG3634 AhpF Alkyl hydroperoxi 91.7 1.1 2.4E-05 41.8 8.4 25 259-283 303-327 (520)
329 PRK12266 glpD glycerol-3-phosp 91.6 0.16 3.5E-06 51.0 3.5 33 137-169 7-39 (508)
330 PRK05329 anaerobic glycerol-3- 91.6 1.3 2.9E-05 43.2 9.7 57 48-106 258-317 (422)
331 PF01134 GIDA: Glucose inhibit 91.6 0.62 1.3E-05 44.7 7.2 57 47-106 93-151 (392)
332 TIGR01989 COQ6 Ubiquinone bios 91.6 0.61 1.3E-05 45.9 7.4 60 47-108 115-184 (437)
333 PRK07233 hypothetical protein; 91.6 0.17 3.7E-06 49.5 3.6 32 138-169 1-32 (434)
334 PRK07236 hypothetical protein; 91.5 0.58 1.2E-05 45.2 7.2 59 47-109 98-156 (386)
335 PF04820 Trp_halogenase: Trypt 91.5 0.74 1.6E-05 45.5 8.0 57 47-106 152-210 (454)
336 PF01210 NAD_Gly3P_dh_N: NAD-d 91.4 0.15 3.3E-06 42.4 2.7 32 138-169 1-32 (157)
337 PRK11728 hydroxyglutarate oxid 91.4 0.18 3.8E-06 48.9 3.4 32 138-169 4-37 (393)
338 PRK05708 2-dehydropantoate 2-r 91.3 0.52 1.1E-05 43.9 6.4 33 137-169 3-35 (305)
339 PRK08401 L-aspartate oxidase; 91.3 0.83 1.8E-05 45.4 8.2 58 47-108 118-176 (466)
340 PLN02612 phytoene desaturase 91.3 0.73 1.6E-05 47.0 7.9 55 49-105 308-364 (567)
341 TIGR02032 GG-red-SF geranylger 91.3 0.2 4.4E-06 45.9 3.6 32 138-169 2-33 (295)
342 PRK06996 hypothetical protein; 91.3 0.65 1.4E-05 45.0 7.3 58 46-105 112-172 (398)
343 PRK07538 hypothetical protein; 91.2 1.6 3.4E-05 42.6 9.9 62 46-108 99-166 (413)
344 KOG1335|consensus 91.2 1.7 3.8E-05 41.1 9.3 60 49-112 252-317 (506)
345 COG1232 HemY Protoporphyrinoge 91.2 0.6 1.3E-05 45.6 6.8 56 48-105 211-266 (444)
346 PRK08163 salicylate hydroxylas 91.2 0.25 5.3E-06 47.8 4.2 35 136-170 4-38 (396)
347 PRK08274 tricarballylate dehyd 91.2 0.88 1.9E-05 45.2 8.2 58 48-107 130-192 (466)
348 COG2907 Predicted NAD/FAD-bind 91.1 0.35 7.5E-06 45.0 4.7 54 51-106 219-272 (447)
349 KOG1800|consensus 91.1 0.67 1.4E-05 43.7 6.5 34 136-169 20-55 (468)
350 PRK11101 glpA sn-glycerol-3-ph 91.1 0.21 4.6E-06 50.7 3.7 32 138-169 8-39 (546)
351 PRK00711 D-amino acid dehydrog 90.9 0.23 4.9E-06 48.5 3.7 32 138-169 2-33 (416)
352 PF01946 Thi4: Thi4 family; PD 90.9 0.18 3.8E-06 44.0 2.5 35 135-169 16-50 (230)
353 PF02882 THF_DHG_CYH_C: Tetrah 90.9 0.63 1.4E-05 38.8 5.7 36 133-168 33-69 (160)
354 PRK13369 glycerol-3-phosphate 90.9 0.23 5E-06 49.9 3.8 32 138-169 8-39 (502)
355 COG1251 NirB NAD(P)H-nitrite r 90.7 1.6 3.6E-05 44.7 9.4 38 245-282 73-114 (793)
356 PRK06475 salicylate hydroxylas 90.7 0.26 5.7E-06 47.8 3.9 34 137-170 3-36 (400)
357 TIGR03377 glycerol3P_GlpA glyc 90.7 1 2.2E-05 45.4 8.2 60 46-107 125-190 (516)
358 TIGR03364 HpnW_proposed FAD de 90.6 0.24 5.3E-06 47.3 3.5 32 138-169 2-33 (365)
359 PLN02576 protoporphyrinogen ox 90.6 0.83 1.8E-05 45.7 7.5 52 53-105 240-295 (496)
360 PRK06475 salicylate hydroxylas 90.5 0.99 2.1E-05 43.8 7.8 60 47-108 105-168 (400)
361 PRK07364 2-octaprenyl-6-methox 90.4 0.26 5.7E-06 48.0 3.7 34 137-170 19-52 (415)
362 PRK04148 hypothetical protein; 90.4 0.38 8.1E-06 38.7 3.8 34 135-169 16-49 (134)
363 TIGR00292 thiazole biosynthesi 90.4 1.1 2.4E-05 40.5 7.4 57 47-105 98-168 (254)
364 cd05211 NAD_bind_Glu_Leu_Phe_V 90.3 0.79 1.7E-05 40.4 6.2 43 132-174 19-62 (217)
365 COG0665 DadA Glycine/D-amino a 90.2 0.3 6.4E-06 47.0 3.8 34 136-169 4-37 (387)
366 PRK07208 hypothetical protein; 90.2 0.31 6.6E-06 48.6 4.0 34 136-169 4-37 (479)
367 PRK08773 2-octaprenyl-3-methyl 90.2 0.29 6.3E-06 47.3 3.7 33 137-169 7-39 (392)
368 TIGR01373 soxB sarcosine oxida 90.2 1.3 2.8E-05 43.0 8.3 59 46-107 180-240 (407)
369 PLN02464 glycerol-3-phosphate 90.2 0.28 6E-06 50.6 3.7 33 137-169 72-104 (627)
370 PRK09126 hypothetical protein; 90.2 0.29 6.2E-06 47.3 3.6 34 137-170 4-37 (392)
371 PRK06481 fumarate reductase fl 90.1 1.3 2.9E-05 44.4 8.5 58 48-107 189-251 (506)
372 PF02826 2-Hacid_dh_C: D-isome 90.1 0.47 1E-05 40.4 4.5 39 131-169 31-69 (178)
373 PLN02268 probable polyamine ox 90.1 0.3 6.5E-06 48.0 3.8 33 137-169 1-33 (435)
374 TIGR02028 ChlP geranylgeranyl 90.1 0.31 6.8E-06 47.3 3.8 32 138-169 2-33 (398)
375 PRK01710 murD UDP-N-acetylmura 90.0 0.31 6.7E-06 48.3 3.8 36 134-169 12-47 (458)
376 TIGR00562 proto_IX_ox protopor 90.0 0.32 6.8E-06 48.2 3.9 33 137-169 3-39 (462)
377 PRK06134 putative FAD-binding 89.9 1.5 3.3E-05 44.9 8.7 59 47-107 215-278 (581)
378 PRK07045 putative monooxygenas 89.9 0.33 7.2E-06 46.9 3.8 33 138-170 7-39 (388)
379 TIGR01988 Ubi-OHases Ubiquinon 89.9 0.3 6.6E-06 46.9 3.5 33 138-170 1-33 (385)
380 TIGR00031 UDP-GALP_mutase UDP- 89.9 0.32 6.9E-06 46.7 3.6 32 138-169 3-34 (377)
381 PRK11101 glpA sn-glycerol-3-ph 89.8 1.1 2.3E-05 45.6 7.5 59 47-107 147-211 (546)
382 PRK01747 mnmC bifunctional tRN 89.8 0.29 6.3E-06 51.0 3.6 33 137-169 261-293 (662)
383 COG1893 ApbA Ketopantoate redu 89.8 0.68 1.5E-05 43.2 5.6 32 138-169 2-33 (307)
384 TIGR00551 nadB L-aspartate oxi 89.7 1.2 2.6E-05 44.5 7.8 60 47-108 126-190 (488)
385 PRK14106 murD UDP-N-acetylmura 89.7 0.39 8.5E-06 47.4 4.3 36 134-169 3-38 (450)
386 cd01075 NAD_bind_Leu_Phe_Val_D 89.7 0.49 1.1E-05 41.2 4.3 38 131-168 23-60 (200)
387 PRK06184 hypothetical protein; 89.5 0.41 8.9E-06 48.1 4.3 34 137-170 4-37 (502)
388 PLN00093 geranylgeranyl diphos 89.5 0.94 2E-05 44.8 6.7 33 137-169 40-72 (450)
389 TIGR02853 spore_dpaA dipicolin 89.4 0.41 9E-06 44.2 3.9 37 133-169 148-184 (287)
390 PRK07494 2-octaprenyl-6-methox 89.4 0.35 7.6E-06 46.6 3.6 34 137-170 8-41 (388)
391 TIGR01984 UbiH 2-polyprenyl-6- 89.4 0.35 7.6E-06 46.5 3.5 33 138-170 1-34 (382)
392 COG3349 Uncharacterized conser 89.3 0.42 9.1E-06 46.9 3.9 33 137-169 1-33 (485)
393 PRK07608 ubiquinone biosynthes 89.3 0.35 7.7E-06 46.6 3.5 33 138-170 7-39 (388)
394 KOG2960|consensus 89.3 2.4 5.2E-05 36.7 7.9 87 261-348 214-322 (328)
395 PRK06263 sdhA succinate dehydr 89.3 1.3 2.7E-05 45.1 7.6 59 47-107 132-197 (543)
396 COG0578 GlpA Glycerol-3-phosph 89.3 0.42 9E-06 47.6 3.9 34 136-169 12-45 (532)
397 PRK08275 putative oxidoreducta 89.2 1.8 4E-05 44.0 8.7 60 47-108 135-201 (554)
398 PRK05945 sdhA succinate dehydr 89.2 1.1 2.5E-05 45.7 7.2 60 47-108 133-198 (575)
399 PRK14176 bifunctional 5,10-met 89.1 1.1 2.4E-05 41.0 6.3 36 133-168 161-197 (287)
400 PRK14183 bifunctional 5,10-met 89.1 1.1 2.3E-05 41.0 6.1 36 133-168 154-190 (281)
401 PRK08244 hypothetical protein; 89.1 0.37 8E-06 48.2 3.5 34 137-170 3-36 (493)
402 TIGR02023 BchP-ChlP geranylger 89.0 0.41 8.9E-06 46.3 3.7 31 138-168 2-32 (388)
403 PRK02705 murD UDP-N-acetylmura 89.0 0.25 5.4E-06 49.0 2.2 32 138-169 2-33 (459)
404 PRK00676 hemA glutamyl-tRNA re 88.9 0.47 1E-05 44.6 3.8 37 133-169 171-208 (338)
405 PF02737 3HCDH_N: 3-hydroxyacy 88.9 0.35 7.6E-06 41.3 2.8 32 138-169 1-32 (180)
406 PRK08013 oxidoreductase; Provi 88.8 0.39 8.5E-06 46.6 3.5 34 137-170 4-37 (400)
407 PRK06185 hypothetical protein; 88.8 0.42 9.1E-06 46.4 3.6 34 136-169 6-39 (407)
408 TIGR02733 desat_CrtD C-3',4' d 88.8 0.43 9.4E-06 47.7 3.8 33 137-169 2-34 (492)
409 PRK08243 4-hydroxybenzoate 3-m 88.7 0.47 1E-05 45.9 3.9 34 137-170 3-36 (392)
410 TIGR01812 sdhA_frdA_Gneg succi 88.7 1.8 3.9E-05 44.2 8.3 60 47-108 127-192 (566)
411 PRK06126 hypothetical protein; 88.7 0.43 9.3E-06 48.4 3.7 33 137-169 8-40 (545)
412 PRK12416 protoporphyrinogen ox 88.6 0.43 9.4E-06 47.3 3.7 33 137-169 2-40 (463)
413 cd01078 NAD_bind_H4MPT_DH NADP 88.6 0.62 1.3E-05 40.2 4.2 37 133-169 25-62 (194)
414 TIGR03329 Phn_aa_oxid putative 88.6 0.4 8.6E-06 47.6 3.4 32 138-169 26-59 (460)
415 TIGR02360 pbenz_hydroxyl 4-hyd 88.6 0.49 1.1E-05 45.8 3.9 34 137-170 3-36 (390)
416 COG1233 Phytoene dehydrogenase 88.5 0.59 1.3E-05 46.7 4.5 34 136-169 3-36 (487)
417 PRK00258 aroE shikimate 5-dehy 88.4 0.58 1.3E-05 43.0 4.1 37 133-169 120-157 (278)
418 PF00899 ThiF: ThiF family; I 88.4 0.37 8.1E-06 38.9 2.5 34 135-168 1-35 (135)
419 PRK06175 L-aspartate oxidase; 88.4 2 4.3E-05 42.2 8.1 59 47-107 126-189 (433)
420 PRK08020 ubiF 2-octaprenyl-3-m 88.4 0.46 1E-05 45.9 3.6 33 137-169 6-38 (391)
421 PF02558 ApbA: Ketopantoate re 88.4 0.46 1E-05 39.0 3.1 31 139-169 1-31 (151)
422 PF12831 FAD_oxidored: FAD dep 88.3 0.43 9.2E-06 46.9 3.3 32 138-169 1-32 (428)
423 PRK05192 tRNA uridine 5-carbox 88.3 1.8 3.9E-05 44.1 7.8 57 47-106 98-156 (618)
424 KOG1298|consensus 88.2 0.6 1.3E-05 44.1 4.0 31 138-168 47-77 (509)
425 COG0644 FixC Dehydrogenases (f 88.2 1.9 4.1E-05 41.8 7.8 59 47-107 93-152 (396)
426 PRK07804 L-aspartate oxidase; 88.1 1.8 3.9E-05 43.9 7.8 60 47-108 142-211 (541)
427 PRK12842 putative succinate de 88.1 2.3 4.9E-05 43.5 8.6 60 46-107 211-275 (574)
428 PRK06617 2-octaprenyl-6-methox 88.1 0.49 1.1E-05 45.5 3.5 32 138-169 3-34 (374)
429 TIGR02731 phytoene_desat phyto 87.9 0.49 1.1E-05 46.7 3.5 32 138-169 1-32 (453)
430 PF03721 UDPG_MGDP_dh_N: UDP-g 87.8 0.91 2E-05 38.9 4.7 33 137-169 1-33 (185)
431 PRK08849 2-octaprenyl-3-methyl 87.8 0.52 1.1E-05 45.5 3.6 32 138-169 5-36 (384)
432 KOG2404|consensus 87.7 1 2.2E-05 41.6 5.0 61 48-108 142-207 (477)
433 PLN02328 lysine-specific histo 87.7 1.4 3E-05 46.5 6.7 46 55-105 440-485 (808)
434 cd05311 NAD_bind_2_malic_enz N 87.7 0.72 1.6E-05 41.0 4.1 37 133-169 22-61 (226)
435 TIGR01320 mal_quin_oxido malat 87.7 0.52 1.1E-05 47.0 3.5 32 138-169 2-35 (483)
436 PF00890 FAD_binding_2: FAD bi 87.6 2 4.4E-05 41.8 7.7 60 47-108 139-204 (417)
437 PRK07538 hypothetical protein; 87.6 0.57 1.2E-05 45.7 3.8 33 138-170 2-34 (413)
438 COG0644 FixC Dehydrogenases (f 87.6 0.63 1.4E-05 45.2 4.0 33 138-170 5-37 (396)
439 TIGR02734 crtI_fam phytoene de 87.4 0.48 1E-05 47.5 3.2 31 139-169 1-31 (502)
440 PLN02576 protoporphyrinogen ox 87.4 0.62 1.3E-05 46.6 3.9 34 136-169 12-46 (496)
441 PLN02927 antheraxanthin epoxid 87.2 0.62 1.3E-05 48.1 3.8 35 135-169 80-114 (668)
442 PRK10015 oxidoreductase; Provi 87.2 0.59 1.3E-05 45.9 3.5 33 138-170 7-39 (429)
443 PRK15116 sulfur acceptor prote 87.0 0.61 1.3E-05 42.4 3.3 37 133-169 27-64 (268)
444 PLN02487 zeta-carotene desatur 87.0 0.74 1.6E-05 46.8 4.2 34 136-169 75-108 (569)
445 PRK11445 putative oxidoreducta 87.0 0.67 1.5E-05 44.1 3.7 32 138-170 3-34 (351)
446 PRK07190 hypothetical protein; 86.9 0.66 1.4E-05 46.4 3.8 34 137-170 6-39 (487)
447 PRK08850 2-octaprenyl-6-methox 86.7 0.67 1.4E-05 45.1 3.7 32 137-168 5-36 (405)
448 TIGR01809 Shik-DH-AROM shikima 86.7 0.89 1.9E-05 41.9 4.2 37 133-169 122-159 (282)
449 TIGR00136 gidA glucose-inhibit 86.6 3.5 7.5E-05 42.1 8.6 57 47-106 94-153 (617)
450 PLN02985 squalene monooxygenas 86.5 0.69 1.5E-05 46.6 3.7 34 136-169 43-76 (514)
451 PRK08205 sdhA succinate dehydr 86.5 2.6 5.7E-05 43.2 8.0 59 47-107 138-206 (583)
452 COG1004 Ugd Predicted UDP-gluc 86.5 1.8 3.8E-05 41.3 6.0 32 138-169 2-33 (414)
453 PRK14190 bifunctional 5,10-met 86.5 2.6 5.7E-05 38.6 7.0 36 133-168 155-191 (284)
454 cd01065 NAD_bind_Shikimate_DH 86.5 0.89 1.9E-05 37.4 3.8 36 134-169 17-53 (155)
455 PRK14173 bifunctional 5,10-met 86.4 1.8 3.9E-05 39.7 6.0 37 133-169 152-189 (287)
456 PRK08132 FAD-dependent oxidore 86.4 0.68 1.5E-05 47.1 3.6 33 137-169 24-56 (547)
457 PLN02529 lysine-specific histo 86.3 2.1 4.5E-05 44.9 7.1 37 68-105 369-405 (738)
458 PRK14194 bifunctional 5,10-met 86.3 1.2 2.6E-05 41.1 4.8 37 133-169 156-193 (301)
459 PRK14172 bifunctional 5,10-met 86.3 1.8 4E-05 39.5 5.9 37 133-169 155-192 (278)
460 TIGR01989 COQ6 Ubiquinone bios 86.3 0.69 1.5E-05 45.5 3.5 32 138-169 2-37 (437)
461 PRK14170 bifunctional 5,10-met 86.2 1.8 4E-05 39.6 5.9 36 133-168 154-190 (284)
462 PRK06487 glycerate dehydrogena 86.2 1.3 2.8E-05 41.6 5.1 36 133-168 145-180 (317)
463 TIGR01813 flavo_cyto_c flavocy 86.1 0.77 1.7E-05 45.2 3.8 32 138-169 1-33 (439)
464 PRK06183 mhpA 3-(3-hydroxyphen 86.1 0.83 1.8E-05 46.3 4.1 35 136-170 10-44 (538)
465 PRK07819 3-hydroxybutyryl-CoA 86.1 0.79 1.7E-05 42.3 3.6 33 137-169 6-38 (286)
466 PLN02927 antheraxanthin epoxid 85.8 3.4 7.4E-05 42.8 8.3 57 47-107 192-248 (668)
467 COG0665 DadA Glycine/D-amino a 85.8 2.5 5.3E-05 40.6 7.1 59 47-107 154-212 (387)
468 PLN02616 tetrahydrofolate dehy 85.8 1.8 3.9E-05 40.8 5.8 36 133-168 228-264 (364)
469 PLN02529 lysine-specific histo 85.7 0.81 1.7E-05 47.9 3.8 35 135-169 159-193 (738)
470 COG3380 Predicted NAD/FAD-depe 85.7 0.93 2E-05 40.9 3.6 53 46-105 105-158 (331)
471 PRK08243 4-hydroxybenzoate 3-m 85.7 3.6 7.8E-05 39.7 8.2 59 48-108 102-164 (392)
472 KOG1276|consensus 85.7 1 2.3E-05 43.1 4.1 41 134-174 9-54 (491)
473 PRK14166 bifunctional 5,10-met 85.6 2.1 4.6E-05 39.1 6.0 36 133-168 154-190 (282)
474 PRK05732 2-octaprenyl-6-methox 85.6 0.73 1.6E-05 44.5 3.2 32 137-168 4-38 (395)
475 PRK14171 bifunctional 5,10-met 85.5 2.1 4.5E-05 39.3 5.9 36 133-168 156-192 (288)
476 PTZ00383 malate:quinone oxidor 85.5 0.75 1.6E-05 46.0 3.3 33 137-169 46-80 (497)
477 COG0569 TrkA K+ transport syst 85.5 1 2.2E-05 39.9 3.9 33 137-169 1-33 (225)
478 PRK08306 dipicolinate synthase 85.5 1 2.2E-05 41.8 4.0 37 133-169 149-185 (296)
479 PLN02328 lysine-specific histo 85.4 1.1 2.3E-05 47.4 4.5 36 134-169 236-271 (808)
480 PRK13977 myosin-cross-reactive 85.4 1.2 2.7E-05 44.8 4.8 37 133-169 19-59 (576)
481 TIGR02354 thiF_fam2 thiamine b 85.4 0.87 1.9E-05 39.6 3.3 36 133-168 18-54 (200)
482 PRK08274 tricarballylate dehyd 85.4 0.82 1.8E-05 45.4 3.6 33 137-169 5-37 (466)
483 TIGR01816 sdhA_forward succina 85.4 2.8 6.1E-05 42.8 7.5 60 47-108 117-182 (565)
484 PRK06854 adenylylsulfate reduc 85.4 4.6 0.0001 41.6 9.1 59 47-107 130-195 (608)
485 PF00890 FAD_binding_2: FAD bi 85.3 0.78 1.7E-05 44.7 3.4 33 138-170 1-33 (417)
486 PRK07066 3-hydroxybutyryl-CoA 85.3 0.96 2.1E-05 42.4 3.8 33 137-169 8-40 (321)
487 PRK08294 phenol 2-monooxygenas 85.3 0.87 1.9E-05 47.1 3.8 32 138-169 34-66 (634)
488 PRK05257 malate:quinone oxidor 85.2 0.79 1.7E-05 45.9 3.3 33 137-169 6-40 (494)
489 PRK14180 bifunctional 5,10-met 85.1 2.4 5.3E-05 38.8 6.1 36 133-168 155-191 (282)
490 PRK11790 D-3-phosphoglycerate 85.1 1.5 3.2E-05 42.8 5.0 38 132-169 147-184 (409)
491 PLN02976 amine oxidase 85.1 2.5 5.3E-05 47.3 7.0 49 53-105 937-995 (1713)
492 PRK07121 hypothetical protein; 85.0 3.7 7.9E-05 41.1 8.1 59 47-107 175-239 (492)
493 PRK14187 bifunctional 5,10-met 85.0 2.3 4.9E-05 39.2 5.9 36 133-168 157-193 (294)
494 TIGR02732 zeta_caro_desat caro 85.0 2.8 6.1E-05 41.7 7.2 57 49-107 219-284 (474)
495 PLN02612 phytoene desaturase 84.9 1.3 2.8E-05 45.2 4.8 38 132-169 89-126 (567)
496 TIGR02028 ChlP geranylgeranyl 84.9 6.4 0.00014 38.2 9.5 59 46-107 90-160 (398)
497 PF00732 GMC_oxred_N: GMC oxid 84.8 1 2.2E-05 41.5 3.8 33 138-170 2-35 (296)
498 PTZ00363 rab-GDP dissociation 84.7 8.2 0.00018 38.0 10.1 56 48-105 231-288 (443)
499 PLN02516 methylenetetrahydrofo 84.6 2.6 5.5E-05 38.9 6.1 36 133-168 164-200 (299)
500 PRK00536 speE spermidine synth 84.6 1.4 3E-05 40.0 4.3 33 135-169 72-104 (262)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=2.9e-79 Score=602.61 Aligned_cols=384 Identities=34% Similarity=0.575 Sum_probs=250.4
Q ss_pred CCCCccccccCCCC----CCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343 1 MESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76 (396)
Q Consensus 1 ~~~~iGG~W~~~~~----~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~ 76 (396)
|+++|||+|+++++ ++++|+++++|+|+++|+|||||+|+++|.||+++++.+||++||++|+|.++|+|||+|++
T Consensus 32 ~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~ 111 (531)
T PF00743_consen 32 KSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVS 111 (531)
T ss_dssp SSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEE
T ss_pred cCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeE
Confidence 68999999998653 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC-----CeEEEEEcc-Cc--EEEcCEEEEcccCCCCCCCCC--CCC--CcccceeecccCCCCCCCCCCeEEEEcC
Q psy2343 77 LEQYE-----DIWEVELSN-GK--KKKYDFIAVCNGAQRVARYPN--YSG--YFSGEILHSMDYKSPDQIRNKRVLVVGA 144 (396)
Q Consensus 77 v~~~~-----~~~~V~~~~-g~--~~~~d~vvvAtG~~~~p~~P~--~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~ 144 (396)
|++.+ ++|+|++++ |+ +..||+||||||+++.|++|. +|| .|+|+++||.+|++++.|+||||+|||+
T Consensus 112 v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~ 191 (531)
T PF00743_consen 112 VERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGG 191 (531)
T ss_dssp EEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESS
T ss_pred eeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeC
Confidence 99862 589999865 33 367999999999999999995 999 8999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCcEEEEeccCceeecCCC-CCCChhHHHHh---------hCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 145 GNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQ---------LGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 145 G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~-~~~~~~~~~~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
|+||+|||.+|++.|++|++++|++.|++|+.. .|.|.|..... +|..+.+ ++.++.+.. ..+.
T Consensus 192 g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~-----~~~~~~l~~-~~~~ 265 (531)
T PF00743_consen 192 GNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSN-----WLLEKKLNK-RFDH 265 (531)
T ss_dssp SHHHHHHHHHHTTTSCCEEEECC---------------------------------------------------------
T ss_pred CHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccccccccccccccccccc-----ccccccccc-cccc
Confidence 999999999999999999999999999999986 58898876432 3433333 333333322 2345
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEe-cCcEEEEccCCCCCCCCCCcccccc
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI-EVDTIIYATGYNRHFPFIDKEKLEW 293 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~-~~D~VI~aTG~~~~~~~l~~~~~~~ 293 (396)
+.+|+ .|.+....+++++++++...+.+|+|++++.|+++++++|+|.||+++ ++|+||+||||+.++|||+++.+..
T Consensus 266 ~~~gl-~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~ 344 (531)
T PF00743_consen 266 ENYGL-KPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKV 344 (531)
T ss_dssp ----------------------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S
T ss_pred ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67777 788888888999999999999999999999999999999999999984 7999999999999999999887777
Q ss_pred cCCccccccccccCC--CCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC--ccCCCccc
Q psy2343 294 KLGIPDLFIHIAPRN--LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP--DLGQDYFI 369 (396)
Q Consensus 294 ~~~~~~l~~~~~~~~--~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~--~~~~~~~~ 369 (396)
.++.+.||+++|+++ .|+|+|||.+++.++.++.+|+||||+|++++|+.+||+. ++|.+++++ ++...+|.
T Consensus 345 ~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~----~~M~~~i~~~~~~~~~~~~ 420 (531)
T PF00743_consen 345 DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSK----EEMMEEIEEEQEWRAKRFG 420 (531)
T ss_dssp -SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----H----HHHHHHHHHHHHHHHT--S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccc
Confidence 777889999999986 4899999999988889999999999999999999999997 899888654 23333566
Q ss_pred cCCCceeeeeHHHHHHHHHHhccccc
Q psy2343 370 DSHRHLWEVDFWKFIKCARMYRDMLD 395 (396)
Q Consensus 370 ~~~~~~~~~~~~~y~~~l~~~~g~~~ 395 (396)
.+++|.+++||..|+|+||+++|++|
T Consensus 421 ~~~~~~~~~d~~~y~deLA~~iG~~P 446 (531)
T PF00743_consen 421 FSPRHTIQVDYIDYMDELAREIGCKP 446 (531)
T ss_dssp HHHHHHHHHHHHHHHHTTS-------
T ss_pred cccccccccccccccccccccccccc
Confidence 66788889999999999999999987
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.3e-59 Score=457.91 Aligned_cols=327 Identities=22% Similarity=0.381 Sum_probs=269.6
Q ss_pred CCCCccccccCCCC---------------CCCCCCceeeecCCCccccCCCCCCCC-------CCCCCChHHHHHHHHHH
Q psy2343 1 MESDLGGVWNSQAS---------------CGRVYPSLHLISPKFNTQVPDYPMPDN-------YPVYPNHSMMLDYLRSY 58 (396)
Q Consensus 1 ~~~~iGG~W~~~~~---------------~~~~y~~~~~~~~~~~~~~~~~p~p~~-------~~~~p~~~~~~~Yl~~~ 58 (396)
|++++||+|++++. +|++|++|++|+|+++|+|+|||++.. .+.||++.++.+||++|
T Consensus 41 ~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~ 120 (461)
T PLN02172 41 REKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDF 120 (461)
T ss_pred cCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHH
Confidence 57899999998643 388999999999999999999999753 36799999999999999
Q ss_pred HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--c--EEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCC
Q psy2343 59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--K--KKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPD 132 (396)
Q Consensus 59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~--~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~ 132 (396)
+++|++.++|+|+++|++|++.+++|+|++.++ . +..||+||||||+++.|++|.+|| .|.|.++|++.|+.++
T Consensus 121 a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~ 200 (461)
T PLN02172 121 AREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD 200 (461)
T ss_pred HHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc
Confidence 999999999999999999999888999998643 2 367999999999999999999999 8999999999999999
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 212 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (396)
.++||+|+|||+|+||+|+|.+|+..+++|++++|++.... ..
T Consensus 201 ~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~-------------------~~------------------ 243 (461)
T PLN02172 201 PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT-------------------YE------------------ 243 (461)
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc-------------------cc------------------
Confidence 99999999999999999999999999999999999752100 00
Q ss_pred CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEe-CCeEEecCCcEecCcEEEEccCCCCCCCCCCccc-
Q psy2343 213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN-GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK- 290 (396)
Q Consensus 213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~-~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~- 290 (396)
.++.| ..++.+.+.|..+. +++|+|+||+.+++|.||+||||++++|||+...
T Consensus 244 -----~~~~~--------------------~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~ 298 (461)
T PLN02172 244 -----KLPVP--------------------QNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY 298 (461)
T ss_pred -----cCcCC--------------------CCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccc
Confidence 00001 01233344455443 4569999999999999999999999999998643
Q ss_pred ccccCCcc-ccccccccCCC-CcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC--ccCCC
Q psy2343 291 LEWKLGIP-DLFIHIAPRNL-DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP--DLGQD 366 (396)
Q Consensus 291 ~~~~~~~~-~l~~~~~~~~~-p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~--~~~~~ 366 (396)
+..+++.+ +||+++|++.. |+|+|+|.+. .+..++.+|+||+|+|++|+|+.+||+. ++|+++++. +...
T Consensus 299 i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~~LPs~----~~m~~~~~~~~~~~~- 372 (461)
T PLN02172 299 MRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRVTLPSE----DKMMEDINAWYASLE- 372 (461)
T ss_pred eeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHHHHH-
Confidence 44555655 79999999975 9999999984 4678999999999999999999999997 999988654 1111
Q ss_pred ccccCCCceeee--eHHHHHHHHHHhccccc
Q psy2343 367 YFIDSHRHLWEV--DFWKFIKCARMYRDMLD 395 (396)
Q Consensus 367 ~~~~~~~~~~~~--~~~~y~~~l~~~~g~~~ 395 (396)
.+...+||...+ .+..|+|+||+++|+.+
T Consensus 373 ~~g~~~r~~h~~~~~~~~y~~~la~~~g~~~ 403 (461)
T PLN02172 373 ALGIPKRYTHKLGKIQSEYLNWIAEECGCPL 403 (461)
T ss_pred hcCCCCceeEEcCccHHHHHHHHHHHhCCCC
Confidence 122345554443 48999999999999875
No 3
>KOG1399|consensus
Probab=100.00 E-value=9e-52 Score=395.19 Aligned_cols=325 Identities=28% Similarity=0.469 Sum_probs=264.8
Q ss_pred CCCCccccccCCCC----CCCCCCceeeecCCCccccCCCCCCCCCCCC-CChHHHHHHHHHHHHHcCCCCceEeCcEEE
Q psy2343 1 MESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPVY-PNHSMMLDYLRSYAKKFDVYNHSIFNTEVI 75 (396)
Q Consensus 1 ~~~~iGG~W~~~~~----~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~-p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~ 75 (396)
|+++|||+|.+.+. +|++|++|++|+|+++|+|+|||+|++.|.| |++.++.+||++||++|+|.++|+|+++|.
T Consensus 37 r~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~ 116 (448)
T KOG1399|consen 37 RTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVV 116 (448)
T ss_pred ecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEE
Confidence 68899999999865 6799999999999999999999999998875 999999999999999999999999999999
Q ss_pred EEEEeC-CeEEEEEccC----cEEEcCEEEEcccCCCCCCCCCCCC----CcccceeecccCCCCCCCCCCeEEEEcCCC
Q psy2343 76 NLEQYE-DIWEVELSNG----KKKKYDFIAVCNGAQRVARYPNYSG----YFSGEILHSMDYKSPDQIRNKRVLVVGAGN 146 (396)
Q Consensus 76 ~v~~~~-~~~~V~~~~g----~~~~~d~vvvAtG~~~~p~~P~~~g----~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~ 146 (396)
+|+..+ ++|.|.+.++ +...||+||||||++..|++|.++| .|+|+++||++|+.++.|++|+|+|||+|+
T Consensus 117 ~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 117 RVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred EEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 999987 7999999764 3578999999999996699999988 899999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCcEEEEeccC-ceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343 147 SGCDIAVDASHHSEKVYHSTRRG-YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP 225 (396)
Q Consensus 147 sa~d~a~~l~~~~~~V~l~~r~~-~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 225 (396)
||+|++.+++..+++|+++.+++ ....|
T Consensus 197 SG~DIs~d~~~~ak~v~~~~~~~~~~~~~--------------------------------------------------- 225 (448)
T KOG1399|consen 197 SGMDISLDLLRVAKEVHLSVVSPKVHVEP--------------------------------------------------- 225 (448)
T ss_pred cHHHHHHHHHHhccCcceeeecccccccc---------------------------------------------------
Confidence 99999999999999999997620 00000
Q ss_pred CCcccCccCchhhhcccCCCeEecCCcceEeCCeEEec-CCcEecCcEEEEccCCCCCCCCCCcccc--cccCCcccccc
Q psy2343 226 LDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFV-DDTHIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFI 302 (396)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~-dG~~~~~D~VI~aTG~~~~~~~l~~~~~--~~~~~~~~l~~ 302 (396)
...+.. ++...+.|..+++++..|. +|....+|.||+||||...+|||+.... ..++..-++|+
T Consensus 226 ------------~~~~~~-~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k 292 (448)
T KOG1399|consen 226 ------------PEILGE-NLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYK 292 (448)
T ss_pred ------------cceeec-ceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchhe
Confidence 000111 3333344888888885555 5556889999999999999999997653 23444468999
Q ss_pred ccccCC-CCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC--ccCCCccccCCCceeeee
Q psy2343 303 HIAPRN-LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP--DLGQDYFIDSHRHLWEVD 379 (396)
Q Consensus 303 ~~~~~~-~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~ 379 (396)
+++++. .|++.++|...-. ..++..|.|+||+++++.|..++|+. ++|..+.+. ......+..+.||+.+.+
T Consensus 293 ~~~p~~~~~~~~~~~l~~~~-~~f~~~e~Q~r~~~~v~~G~~~lps~----~~m~~d~~~~~~~~~~~~~~~~~~t~~~~ 367 (448)
T KOG1399|consen 293 KVFPPALAPGLSLAGLPLIQ-IPFPMFELQARWVAAVLEGRLKLPSK----DQMLEDGQEKYEKLDAVGLATGRHTHVPD 367 (448)
T ss_pred eccchhhCccccccccCeee-EeecceehhhhhhHhhhcCCCcCCCH----HHhhhhhhhhhhhhhhhcccccccccccc
Confidence 998876 4677777765422 67889999999999999999999997 888887654 223335667788887764
Q ss_pred ---HHHHHHHHHHhcccc
Q psy2343 380 ---FWKFIKCARMYRDML 394 (396)
Q Consensus 380 ---~~~y~~~l~~~~g~~ 394 (396)
...|...++...|+.
T Consensus 368 ~~~l~~y~~~~~~~~g~~ 385 (448)
T KOG1399|consen 368 YDELAEYINWFADLCGFP 385 (448)
T ss_pred hHHHHHHhhhhhhhcCCC
Confidence 466777677666653
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=306.00 Aligned_cols=341 Identities=24% Similarity=0.344 Sum_probs=257.8
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 80 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~ 80 (396)
|++++||+|+++ +|++++++++++.++|+++|++ +.+.|+...++.+|+..|++++++..+|+|+++|..++.+
T Consensus 40 k~~~~Gg~W~~~-----ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~ 113 (443)
T COG2072 40 KRDDVGGTWRYN-----RYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWD 113 (443)
T ss_pred ccCCcCCcchhc-----cCCceEECCchheeccCCCccC-CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEec
Confidence 678999999998 7999999999999999999998 6667888888999999999999999999999999999887
Q ss_pred --CCeEEEEEccCcE--EEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHH
Q psy2343 81 --EDIWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 154 (396)
Q Consensus 81 --~~~~~V~~~~g~~--~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~ 154 (396)
++.|+|+++++.+ +++|.||+|||+++.|++|.|+| .|.|.++||++|++.++++||+|+|||+|+||+|+|.+
T Consensus 114 ~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~ 193 (443)
T COG2072 114 EDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPE 193 (443)
T ss_pred CCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHH
Confidence 5699999998765 45999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEeccCceeecCCCCCCChhHHHH--h-hCccccCh----------------------HHHHHHHHHHHHH
Q psy2343 155 ASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML--Q-LGNKFSSK----------------------EETMAYIKQVFKL 209 (396)
Q Consensus 155 l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~--~-~p~~~~~~----------------------~~~~~~~~~~~~~ 209 (396)
|++.+++||++.|++.+.+|+...+.+...... . +|...... .......+..++.
T Consensus 194 l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (443)
T COG2072 194 LAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRF 273 (443)
T ss_pred HHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhc
Confidence 999999999999999999998876655443221 1 22221110 0000111111111
Q ss_pred hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-CcceEeCCeEEecCCcEecCcEEEEccCCCC-CCCCCC
Q psy2343 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLNGNIVHFVDDTHIEVDTIIYATGYNR-HFPFID 287 (396)
Q Consensus 210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~-~~~~l~ 287 (396)
...+........|.....+++..+...+...+..+++.+.+ .+..+....+...+|..++.|.++.+||+.. .+..+.
T Consensus 274 ~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~ 353 (443)
T COG2072 274 LVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAA 353 (443)
T ss_pred cccccChHhhcCCCCCccccccccccchhhhhhhcccceeeccccccCCcceecCCCccccceEEEecCCCchhheeeec
Confidence 11111111122355566666677777888888888888765 4566666777777777799999999999987 454444
Q ss_pred cccc--cccCCccccccccccCCCCcEEEEecccCcC---chhhHHHHHHHHHHHHHhccccCCC
Q psy2343 288 KEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA---GLGDGLRLQGQFIRSYIQAFIRKSK 347 (396)
Q Consensus 288 ~~~~--~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~---~~~~~ae~qa~~~a~~l~~~~~lp~ 347 (396)
.... .++......|+...-.+.||++.++...... ......+.+.++++..+........
T Consensus 354 ~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (443)
T COG2072 354 GGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAHGRTLGL 418 (443)
T ss_pred cccccccccccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHhcccccc
Confidence 3221 2333445667788888899999999876532 2333557777777776665555444
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.95 E-value=4e-28 Score=213.40 Aligned_cols=162 Identities=33% Similarity=0.553 Sum_probs=120.6
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCc---cccCCCCCCC--------CCCCCCChHHHHHHHHHHHHHcCCCCceE
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFN---TQVPDYPMPD--------NYPVYPNHSMMLDYLRSYAKKFDVYNHSI 69 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~---~~~~~~p~p~--------~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~ 69 (396)
|++.+||.|... |+...+.++... +.+++++... ....+|+++++.+||+++++++++. ++
T Consensus 29 ~~~~~Gg~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~ 100 (203)
T PF13738_consen 29 RNDRPGGVWRRY------YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IR 100 (203)
T ss_dssp SSSSSTTHHHCH-------TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EE
T ss_pred CCCCCCCeeEEe------CCCCccccCccccccccCCcccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cc
Confidence 567899999865 444444444432 2233332211 1246789999999999999999997 99
Q ss_pred eCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343 70 FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSG 148 (396)
Q Consensus 70 ~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa 148 (396)
++++|++|++++++|.|++++++++.||+||+|||.++.|++|.++| .+. ..+|+.++.+...++||+|+|||+|+||
T Consensus 101 ~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA 179 (203)
T PF13738_consen 101 FNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSA 179 (203)
T ss_dssp TS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGGG-STTGGCTTSEEEEE--SHHH
T ss_pred cCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehhhcCChhhcCCCcEEEEcChHHH
Confidence 99999999999888999999997789999999999999999999999 655 8899999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccCce
Q psy2343 149 CDIAVDASHHSEKVYHSTRRGYH 171 (396)
Q Consensus 149 ~d~a~~l~~~~~~V~l~~r~~~~ 171 (396)
+|+|..|++.+++|++++|++.|
T Consensus 180 ~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 180 VDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp HHHHHHHTTTCSEEEEEESS---
T ss_pred HHHHHHHHhhCCEEEEEecCCCC
Confidence 99999999999999999999866
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.94 E-value=2.3e-25 Score=207.79 Aligned_cols=229 Identities=20% Similarity=0.216 Sum_probs=172.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
.++.++..|++++++++++. +++ ++|++|+++++.|.|++.++.++.||+||+|||. .|+.|.+|| .+.+..+
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~--~~~~~~i~g~~~~~~~~~ 128 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA--SARKLGIPGEDEFLGRGV 128 (300)
T ss_pred CChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC--CcccCCCCChhhcCCccE
Confidence 35679999999999999987 777 8999999988889999888888999999999999 788888998 5666666
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|.+.+.+...+++++|+|||+|.+|+|+|..|++.+++|+++.|++.+.. .+ .+.
T Consensus 129 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------~~-------------------~~~ 183 (300)
T TIGR01292 129 SYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------EK-------------------ILL 183 (300)
T ss_pred EEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------CH-------------------HHH
Confidence 66656555567899999999999999999999999999999999763210 00 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeEe--cCCcceEeCC----eEEec---CC--cEecCc
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILP--KDDIKNLNGN----IVHFV---DD--THIEVD 271 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~--~~~i~~i~~~----~v~~~---dG--~~~~~D 271 (396)
+. +.. ..|++ ...+.+++++ .+++. +| .++++|
T Consensus 184 ~~-----------------------------------l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D 228 (300)
T TIGR01292 184 DR-----------------------------------LRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVD 228 (300)
T ss_pred HH-----------------------------------HHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEcc
Confidence 11 111 13332 2345555543 24443 24 458999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhc
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~ 341 (396)
.||+|||++++.+++... +..+ ++.+.+++. +.+++|+||++||+.. ....+..|..||+.+|..+..
T Consensus 229 ~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 229 GVFIAIGHEPNTELLKGL-LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred EEEEeeCCCCChHHHHHh-heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 999999999998888765 4443 355666655 5789999999999986 345677899999999988764
No 7
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-24 Score=199.83 Aligned_cols=233 Identities=20% Similarity=0.207 Sum_probs=176.4
Q ss_pred CCCCCCCC---ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCC
Q psy2343 39 PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 115 (396)
Q Consensus 39 p~~~~~~p---~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~ 115 (396)
-+++|.|+ ++.++.+-++..+++++.. +.. .+|.+++..++.|+|++++++ +++++||||||. .++.|.+|
T Consensus 48 venypg~~~~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~--~~~~~~~~ 121 (305)
T COG0492 48 VENYPGFPGGILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGA--GARKLGVP 121 (305)
T ss_pred ecCCCCCccCCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCC--cccCCCCC
Confidence 45666666 4789999999999999976 444 688888875448999999988 999999999999 78888888
Q ss_pred C--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccc
Q psy2343 116 G--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 193 (396)
Q Consensus 116 g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 193 (396)
| .|.|+.+|.|..|+. .++||+|+|||+|+||+|-|..|++.+++||+++|++.+.. .+
T Consensus 122 ~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--------~~---------- 182 (305)
T COG0492 122 GEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--------EE---------- 182 (305)
T ss_pred cchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--------CH----------
Confidence 8 799999999999999 99999999999999999999999999999999999974211 00
Q ss_pred cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC---CeEEecCC--c
Q psy2343 194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG---NIVHFVDD--T 266 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~---~~v~~~dG--~ 266 (396)
.+.+++. ...+|. ....|.++.+ .+|.+.+. +
T Consensus 183 -------~~~~~l~----------------------------------~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~ 221 (305)
T COG0492 183 -------ILVERLK----------------------------------KNVKIEVLTNTVVKEILGDDVEGVVLKNVKGE 221 (305)
T ss_pred -------HHHHHHH----------------------------------hcCCeEEEeCCceeEEecCccceEEEEecCCc
Confidence 1111111 011344 3456888877 47888774 3
Q ss_pred --EecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHH
Q psy2343 267 --HIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSY 338 (396)
Q Consensus 267 --~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~ 338 (396)
.+.+|.|+.++|+.|+..|+.......+++.+.+... +.|++|+||++||++.... ++..+-.++-.+|..
T Consensus 222 ~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~-~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~ 295 (305)
T COG0492 222 EKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEE-METSVPGIFAAGDVADKNGRQIATAAGDGAIAALS 295 (305)
T ss_pred eEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCC-cccCCCCEEEeEeeccCcccEEeehhhhHHHHHHH
Confidence 4789999999999999988876555223455555444 7999999999999986532 344444444444443
No 8
>PRK10262 thioredoxin reductase; Provisional
Probab=99.92 E-value=4.7e-24 Score=200.88 Aligned_cols=235 Identities=17% Similarity=0.240 Sum_probs=171.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
..+.+++.+|+.++++.++.. ++++ +|+.|+..++.|+++.+++ .+.||+||+|||. .|+.|++|| .|.++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~--~~~~~~i~g~~~~~~~~ 132 (321)
T PRK10262 59 DLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGA--SARYLGLPSEEAFKGRG 132 (321)
T ss_pred CCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCC--CCCCCCCCCHHHcCCCc
Confidence 456789999999999999875 6665 6788888788899887544 5899999999999 788999999 577888
Q ss_pred eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+|++.+.+.....+|+|+|||+|.+|+|+|..|++.+++|+++.|++.+ +.. + .+
T Consensus 133 v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~--~~~----~-------------------~~ 187 (321)
T PRK10262 133 VSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--RAE----K-------------------IL 187 (321)
T ss_pred EEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc--CCC----H-------------------HH
Confidence 8888888777788999999999999999999999999999999997632 000 0 01
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC-----eEEecCC------cEec
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN-----IVHFVDD------THIE 269 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~-----~v~~~dG------~~~~ 269 (396)
...+.+.++...|++. ..+.+++++ .|++.++ ++++
T Consensus 188 -------------------------------~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 188 -------------------------------IKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred -------------------------------HHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence 1112233344455543 356777654 3666543 3589
Q ss_pred CcEEEEccCCCCCCCCCCcccccccCCccccccc----cccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcc
Q psy2343 270 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH----IAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+|.||+|+|++|+..++.. .+..+++.+.+..+ .+.++.|+||++||+... ......|..+|+.+|..+...
T Consensus 237 ~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~ 313 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY 313 (321)
T ss_pred CCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHH
Confidence 9999999999999887664 34444455555432 357899999999999753 233444556666666555444
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.91 E-value=2.7e-23 Score=207.36 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=178.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
+.++.++.++++.+++++++. ++++++|++|++.++.|.|++.++.++.||.||+|||. .|+.|.+|| .|.+..
T Consensus 262 ~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~--~~r~~~ipG~~~~~~~~ 337 (517)
T PRK15317 262 ETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA--RWRNMNVPGEDEYRNKG 337 (517)
T ss_pred CCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC--CcCCCCCCCHHHhcCce
Confidence 356789999999999999987 88899999999877889999988888999999999999 788889999 677877
Q ss_pred eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+|++..++...++||+|+|||+|++|+|+|..|+..+++|+++.|.+.... . ..
T Consensus 338 v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---------------------~-----~~ 391 (517)
T PRK15317 338 VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---------------------D-----QV 391 (517)
T ss_pred EEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---------------------c-----HH
Confidence 887766666667899999999999999999999999999999998763210 0 11
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc-CCCeEe--cCCcceEeCC-----eEEecC---Cc--Eec
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILP--KDDIKNLNGN-----IVHFVD---DT--HIE 269 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~g~i~~--~~~i~~i~~~-----~v~~~d---G~--~~~ 269 (396)
... .+. ..+|++ ...++++.++ .|.+.+ |+ .++
T Consensus 392 l~~----------------------------------~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~ 437 (517)
T PRK15317 392 LQD----------------------------------KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLE 437 (517)
T ss_pred HHH----------------------------------HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence 110 111 113333 3345555543 255543 43 489
Q ss_pred CcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccccCC
Q psy2343 270 VDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFIRKS 346 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~~lp 346 (396)
+|.|++|+|++|+..+++.. +..+ ++.+.+.+.+ .++.|+||++||+.... ..+..|..+|..+|..+...+..+
T Consensus 438 ~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 438 LEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred cCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhc
Confidence 99999999999999988755 4443 3556555544 68999999999997643 446678888888887776555433
No 10
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.90 E-value=4.2e-23 Score=201.94 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=163.3
Q ss_pred hHHHHHH-HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-CcEEE--cCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343 48 HSMMLDY-LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKK--YDFIAVCNGAQRVARYPNYSGYFSGEIL 123 (396)
Q Consensus 48 ~~~~~~Y-l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~~~~--~d~vvvAtG~~~~p~~P~~~g~~~g~~~ 123 (396)
.+++..| .+++++++++. ++++++|++|+++++.+.+.... ++++. ||+||||||+ .|+.|.+||.-...++
T Consensus 42 ~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~--~p~~~~i~G~~~~~v~ 117 (427)
T TIGR03385 42 RNKLLAYTPEVFIKKRGID--VKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA--SPIVPNIEGINLDIVF 117 (427)
T ss_pred HHHcccCCHHHHHHhcCCe--EEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC--CCCCCCCCCcCCCCEE
Confidence 3455555 35566888886 78899999999877766665432 44567 9999999999 8999999882112233
Q ss_pred ecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 124 HSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 124 hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
+.....+.. ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+....+.. + .
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~----~---------~----- 179 (427)
T TIGR03385 118 TLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLF----D---------E----- 179 (427)
T ss_pred EECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcccc----C---------H-----
Confidence 332221111 24578999999999999999999999999999998763211110 0 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe--EEecCCcEecCcE
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI--VHFVDDTHIEVDT 272 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~--v~~~dG~~~~~D~ 272 (396)
.+... +.+.++...|++ ...|.+++++. +.+.+|+.+++|.
T Consensus 180 ----~~~~~-------------------------------~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~ 224 (427)
T TIGR03385 180 ----EMNQI-------------------------------VEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADM 224 (427)
T ss_pred ----HHHHH-------------------------------HHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCE
Confidence 01110 111111223343 34566676443 3778899999999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhc
Q psy2343 273 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 273 VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~ 341 (396)
||+|||++++.++++...+..+ ++.+.+.+. +.++.|+||++||+... .+....|..||+.+|++|.|
T Consensus 225 vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~-~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 225 VILATGIKPNSELAKDSGLKLGETGAIWVNEK-FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred EEECCCccCCHHHHHhcCcccCCCCCEEECCC-cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 9999999999888876566554 355666655 46789999999999742 24577899999999999987
Q ss_pred c
Q psy2343 342 F 342 (396)
Q Consensus 342 ~ 342 (396)
.
T Consensus 304 ~ 304 (427)
T TIGR03385 304 N 304 (427)
T ss_pred C
Confidence 5
No 11
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.90 E-value=8.7e-23 Score=196.42 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=161.6
Q ss_pred ChHHHHHH-HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeec
Q psy2343 47 NHSMMLDY-LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS 125 (396)
Q Consensus 47 ~~~~~~~Y-l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs 125 (396)
..+++..+ .+.+++++++. ++++++|++|+++.. +|++ ++.++.||+||||||+ .|..|+++|.-. +++.
T Consensus 55 ~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~--~~~~p~i~G~~~--v~~~ 125 (377)
T PRK04965 55 RADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGA--SAFVPPIPGREL--MLTL 125 (377)
T ss_pred CHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCC--CCCCCCCCCCce--EEEE
Confidence 34555543 66778888887 888999999987543 5665 4566899999999999 889999998211 3332
Q ss_pred ccCCCC-----CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 126 MDYKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 126 ~~~~~~-----~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
..+.+. ....+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +|+. +|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~-l~~~------------~~~--------- 183 (377)
T PRK04965 126 NSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL-LASL------------MPP--------- 183 (377)
T ss_pred CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc-cchh------------CCH---------
Confidence 222111 1125789999999999999999999999999999987632 1110 010
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEE
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTII 274 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI 274 (396)
.+. ..+.+.+....|++ ...|++++.. .|.+.||+++++|.||
T Consensus 184 ~~~-------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI 232 (377)
T PRK04965 184 EVS-------------------------------SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVI 232 (377)
T ss_pred HHH-------------------------------HHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEE
Confidence 011 11111122223343 3456666542 3778899999999999
Q ss_pred EccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----chhhHHHHHHHHHHHHHhccc
Q psy2343 275 YATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 275 ~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+|+|.+++..++....+..++ ++.+.+ .+.++.|+||++||+.... +.+..+..||+.+|++|.|..
T Consensus 233 ~a~G~~p~~~l~~~~gl~~~~-gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 233 AAAGLRPNTALARRAGLAVNR-GIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred ECcCCCcchHHHHHCCCCcCC-CEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 999999998877666666554 355554 4578899999999997532 345668899999999998853
No 12
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.90 E-value=1.9e-22 Score=201.10 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
....++.+++.++++++++. ++++++|++|+.+++.|.|++.++..+.||+||+|||. .|+.|++|| .+.+..+
T Consensus 264 ~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa--~~~~~~ipG~~~~~~~~v 339 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYPID--LMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA--RWRKLGVPGEKEYIGKGV 339 (515)
T ss_pred CCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC--CcCCCCCCCHHHcCCCeE
Confidence 35788999999999999987 88899999999877789999888888999999999999 678888998 4556556
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
+.+..++...+.+++|+|||+|.+|+|+|..|+..+++|+++.+.+.... . ...
T Consensus 340 ~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~---------------------~-----~~l 393 (515)
T TIGR03140 340 AYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA---------------------D-----KVL 393 (515)
T ss_pred EEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh---------------------h-----HHH
Confidence 66555554456799999999999999999999999999999987652100 0 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeE--ecCCcceEeCC-----eEEecCC-----cEecC
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDIL--PKDDIKNLNGN-----IVHFVDD-----THIEV 270 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~--~~~~i~~i~~~-----~v~~~dG-----~~~~~ 270 (396)
. ..+.. ..|. ....+.++.++ +|.+.++ +.+++
T Consensus 394 ~----------------------------------~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 394 Q----------------------------------DKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred H----------------------------------HHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence 1 11111 1233 33456666543 3666543 35899
Q ss_pred cEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhcc
Q psy2343 271 DTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 271 D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~ 342 (396)
|.||+|+|.+|+.++++.. +..+ ++.+.+... +.+++|+||++||+.... ..+..|..||+.+|..+.+.
T Consensus 440 D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~-~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDER-GRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred CEEEEEeCCcCCchHHhhh-cccCCCCeEEECCC-CCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHH
Confidence 9999999999999988754 5443 345655544 468999999999997642 34557888888888876654
No 13
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.89 E-value=8.9e-23 Score=212.01 Aligned_cols=234 Identities=16% Similarity=0.142 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++.....++.++.+++ ++++++|++|++.. ++|++.+|.++.||+||||||+ .|+.|++|| ...+ +++..
T Consensus 53 ~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs--~p~~p~ipG~~~~~-v~~~r 125 (785)
T TIGR02374 53 LDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGS--YPFILPIPGADKKG-VYVFR 125 (785)
T ss_pred HHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCC--CcCCCCCCCCCCCC-EEEeC
Confidence 455555555666777877 88899999998743 4788888888999999999999 899999999 4433 33322
Q ss_pred cCCCCC-----CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343 127 DYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 201 (396)
Q Consensus 127 ~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 201 (396)
.+.+.. ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+ +++. +.. .
T Consensus 126 t~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l-l~~~----------------ld~-----~ 183 (785)
T TIGR02374 126 TIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL-MAKQ----------------LDQ-----T 183 (785)
T ss_pred CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch-hhhh----------------cCH-----H
Confidence 222211 125789999999999999999999999999999987632 1111 000 0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC----CeEEecCCcEecCcEEEE
Q psy2343 202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----NIVHFVDDTHIEVDTIIY 275 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~----~~v~~~dG~~~~~D~VI~ 275 (396)
... .+.+.+....|+ ....+.++.+ ..|.|+||+.+++|.||+
T Consensus 184 ~~~-------------------------------~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~ 232 (785)
T TIGR02374 184 AGR-------------------------------LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVM 232 (785)
T ss_pred HHH-------------------------------HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEE
Confidence 000 011111112333 3344556643 257899999999999999
Q ss_pred ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----chhhHHHHHHHHHHHHHhccc
Q psy2343 276 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 276 aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----~~~~~ae~qa~~~a~~l~~~~ 343 (396)
|+|++|+..++....+..+ +++.+.+. +.++.|+||++||+.... ..+..+..||+.+|.+|.|..
T Consensus 233 a~G~~Pn~~la~~~gl~~~-ggI~Vd~~-~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 233 AAGIRPNDELAVSAGIKVN-RGIIVNDS-MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred CCCCCcCcHHHHhcCCccC-CCEEECCC-cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 9999999888766666655 45555544 578999999999997532 345667899999999998864
No 14
>KOG0404|consensus
Probab=99.89 E-value=1.3e-22 Score=170.49 Aligned_cols=227 Identities=19% Similarity=0.227 Sum_probs=160.5
Q ss_pred CCCCCC---ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-
Q psy2343 41 NYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG- 116 (396)
Q Consensus 41 ~~~~~p---~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g- 116 (396)
++|.|| .+.++.+-++..+++||.. | +-..|.+|+...+-|+|.++.+. ..+|+||+|||+ ..+...+||
T Consensus 59 NfPGFPdgi~G~~l~d~mrkqs~r~Gt~--i-~tEtVskv~~sskpF~l~td~~~-v~~~avI~atGA--sAkRl~~pg~ 132 (322)
T KOG0404|consen 59 NFPGFPDGITGPELMDKMRKQSERFGTE--I-ITETVSKVDLSSKPFKLWTDARP-VTADAVILATGA--SAKRLHLPGE 132 (322)
T ss_pred cCCCCCcccccHHHHHHHHHHHHhhcce--e-eeeehhhccccCCCeEEEecCCc-eeeeeEEEeccc--ceeeeecCCC
Confidence 344444 5789999999999999986 4 55688899988889999986655 799999999999 555555666
Q ss_pred ---CcccceeecccCCCCCC--CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCc
Q psy2343 117 ---YFSGEILHSMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 191 (396)
Q Consensus 117 ---~~~g~~~hs~~~~~~~~--~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~ 191 (396)
.|.-+-+.+|..|+... |++|..+|||||.||+|-|..|.+.+++|++++|+..+
T Consensus 133 ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f-------------------- 192 (322)
T KOG0404|consen 133 GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF-------------------- 192 (322)
T ss_pred CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh--------------------
Confidence 48888899999999875 99999999999999999999999999999999999743
Q ss_pred cccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEecCc
Q psy2343 192 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVD 271 (396)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D 271 (396)
+....+.+....++. .....+....+.+..|++. ..+.-..+...+-+.++++
T Consensus 193 ---------RAs~~Mq~ra~~npn-------------I~v~~nt~~~ea~gd~~~l-----~~l~ikn~~tge~~dl~v~ 245 (322)
T KOG0404|consen 193 ---------RASKIMQQRAEKNPN-------------IEVLYNTVAVEALGDGKLL-----NGLRIKNVKTGEETDLPVS 245 (322)
T ss_pred ---------hHHHHHHHHHhcCCC-------------eEEEechhhhhhccCcccc-----cceEEEecccCcccccccc
Confidence 122222212111110 0011122233333332211 1111111222233458999
Q ss_pred EEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccC
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA 320 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~ 320 (396)
-++++.|-.|+..||+..+....++.+.+-.....+++|++|++||++.
T Consensus 246 GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 246 GLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred eeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccch
Confidence 9999999999999999744322345555556777899999999999974
No 15
>PLN02507 glutathione reductase
Probab=99.89 E-value=1.1e-22 Score=201.42 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=141.0
Q ss_pred CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
.+.++|++.+|+ ++.||+||||||+ .|..|.+|| .. ..++.+...... .+|+|+|||+|.+|+|+|..+++
T Consensus 151 ~~~v~V~~~~g~~~~~~~d~LIIATGs--~p~~p~ipG~~~---~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~ 224 (499)
T PLN02507 151 PNEVEVTQLDGTKLRYTAKHILIATGS--RAQRPNIPGKEL---AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRG 224 (499)
T ss_pred CCEEEEEeCCCcEEEEEcCEEEEecCC--CCCCCCCCCccc---eechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHH
Confidence 567888887775 4789999999999 889999988 32 223333222222 36899999999999999999999
Q ss_pred CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343 158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237 (396)
Q Consensus 158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 237 (396)
.+++|+++.|.+.. +|. ... .+.+. +
T Consensus 225 ~G~~Vtli~~~~~~-l~~----~d~------------------~~~~~-------------------------------l 250 (499)
T PLN02507 225 MGATVDLFFRKELP-LRG----FDD------------------EMRAV-------------------------------V 250 (499)
T ss_pred cCCeEEEEEecCCc-Ccc----cCH------------------HHHHH-------------------------------H
Confidence 99999999987631 111 000 11111 1
Q ss_pred hhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCC--CcccccccC-CccccccccccCC
Q psy2343 238 LYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRN 308 (396)
Q Consensus 238 ~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~ 308 (396)
.+.+.+..|++ ...|+++++ + .+.+.+|+++++|.||+|+|++|+..+| +...++.+. +.+.+.+++ .++
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~-~Ts 329 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS-RTN 329 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC-cCC
Confidence 11112223443 345666642 2 3566788889999999999999998874 444455543 456666554 689
Q ss_pred CCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 309 LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 309 ~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 330 ~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 330 IPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 9999999999866667889999999999999764
No 16
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.89 E-value=4.2e-22 Score=195.06 Aligned_cols=233 Identities=18% Similarity=0.212 Sum_probs=161.3
Q ss_pred hHHHHHHH-HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-Cc--EEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343 48 HSMMLDYL-RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 123 (396)
Q Consensus 48 ~~~~~~Yl-~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~ 123 (396)
.++...|. +.+.++.++. ++++++|++|+.+++...+...+ ++ ++.||+||||||+ .|+.|.+++. .++
T Consensus 56 ~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs--~~~~~~~~~~---~~~ 128 (438)
T PRK13512 56 RKYALAYTPEKFYDRKQIT--VKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA--SANSLGFESD---ITF 128 (438)
T ss_pred HHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC--CCCCCCCCCC---CeE
Confidence 33443332 4555667876 78899999999887766655432 22 3689999999999 8888876541 122
Q ss_pred ecccCCCC-------CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 124 HSMDYKSP-------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 124 hs~~~~~~-------~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
...++.+. ....+++|+|||+|.+|+|+|..+++.+.+|+++.|++.. +|.. . .
T Consensus 129 ~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l-~~~~----d---------~----- 189 (438)
T PRK13512 129 TLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI-NKLM----D---------A----- 189 (438)
T ss_pred EecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc-chhc----C---------H-----
Confidence 22211111 1224689999999999999999999999999999997632 1110 0 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCCcEecCcEEE
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDDTHIEVDTII 274 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI 274 (396)
.+ ...+.+.+.+..|++ ...|+++++..|++++|+.+++|.||
T Consensus 190 ----~~-------------------------------~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl 234 (438)
T PRK13512 190 ----DM-------------------------------NQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMII 234 (438)
T ss_pred ----HH-------------------------------HHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEE
Confidence 11 111122222234444 45688888888999999999999999
Q ss_pred EccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcc
Q psy2343 275 YATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 275 ~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+|+|++++.++++...+..+ ++.+.+.+. +.++.|+||++||+... ....+.+..||+.+|+++.|.
T Consensus 235 ~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred ECcCCCcChHHHHhcCcccCCCCcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 99999999988877666654 355667655 46889999999999641 234556788999999999874
No 17
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.89 E-value=2.5e-22 Score=197.64 Aligned_cols=239 Identities=17% Similarity=0.174 Sum_probs=163.2
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEE--cCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKK--YDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~--~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
....++..+....++++++. ++++++|++|+++++.+.++.. ++.++. ||+||||||+ .|+.|.++| ... .
T Consensus 53 ~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~g~~~~-~ 127 (444)
T PRK09564 53 DDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA--RPIIPPIKNINLE-N 127 (444)
T ss_pred CCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC--CCCCCCCCCcCCC-C
Confidence 44456666666767778876 7889999999987776666542 255556 9999999999 888898888 333 3
Q ss_pred eeecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343 122 ILHSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194 (396)
Q Consensus 122 ~~hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 194 (396)
+++...+.+.. ...+++|+|||+|.+|+|+|..+.+.+++|+++.+.+... |. .+.
T Consensus 128 v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~----------------~~~ 190 (444)
T PRK09564 128 VYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-PD----------------SFD 190 (444)
T ss_pred EEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-ch----------------hcC
Confidence 45544332221 2357899999999999999999999999999998875321 11 000
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe---EEecCCcEec
Q psy2343 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI---VHFVDDTHIE 269 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~---v~~~dG~~~~ 269 (396)
. .+.+.+ .+.+....|++ ...|.++++++ ....++..++
T Consensus 191 ~-----~~~~~l-------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~ 234 (444)
T PRK09564 191 K-----EITDVM-------------------------------EEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYE 234 (444)
T ss_pred H-----HHHHHH-------------------------------HHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEE
Confidence 0 111111 11111112332 34566665332 2234556799
Q ss_pred CcEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHH
Q psy2343 270 VDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSY 338 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~ 338 (396)
+|.||+|+|++++.++++...++. +++.+.+.+.+ .++.|+||++||+... ....+.|..||+.+|++
T Consensus 235 ~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~n 313 (444)
T PRK09564 235 ADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGEN 313 (444)
T ss_pred cCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHH
Confidence 999999999999988888766654 34557666554 5789999999999742 23567899999999999
Q ss_pred Hhccc
Q psy2343 339 IQAFI 343 (396)
Q Consensus 339 l~~~~ 343 (396)
|.|.-
T Consensus 314 i~g~~ 318 (444)
T PRK09564 314 LAGRH 318 (444)
T ss_pred hcCCC
Confidence 98753
No 18
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.89 E-value=3.6e-22 Score=207.40 Aligned_cols=235 Identities=15% Similarity=0.110 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++......+.+..++. ++.+++|++|++.. ..|++.+|+++.||+||||||+ .|..|++|| ...+ ++...
T Consensus 58 ~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs--~p~~p~ipG~~~~~-v~~~r 130 (847)
T PRK14989 58 AEELSLVREGFYEKHGIK--VLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGS--YPWIPPIKGSETQD-CFVYR 130 (847)
T ss_pred HHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCC--CcCCCCCCCCCCCC-eEEEC
Confidence 355555556667778887 88899999998743 4677888888999999999999 899999998 3322 33322
Q ss_pred cCCCCC-----CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343 127 DYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 201 (396)
Q Consensus 127 ~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 201 (396)
.+.+.. ...+++++|||+|.+|+|+|..|++.+.+|+++.+.+.. +|+. +.. .
T Consensus 131 t~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l-l~~~----------------ld~-----~ 188 (847)
T PRK14989 131 TIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML-MAEQ----------------LDQ-----M 188 (847)
T ss_pred CHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc-hhhh----------------cCH-----H
Confidence 222221 125789999999999999999999999999999987632 1111 000 1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC------CeEEecCCcEecCcEE
Q psy2343 202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG------NIVHFVDDTHIEVDTI 273 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~------~~v~~~dG~~~~~D~V 273 (396)
... .+.+.+....|++ ...++++.+ ..|.+.||+.+++|.|
T Consensus 189 ~~~-------------------------------~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~V 237 (847)
T PRK14989 189 GGE-------------------------------QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFI 237 (847)
T ss_pred HHH-------------------------------HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEE
Confidence 111 1111122223443 345666642 2478899999999999
Q ss_pred EEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhccc
Q psy2343 274 IYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 274 I~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
|+|+|.+|+..++....+..+ .+++.+..+ +.++.|+||++||+... ..++..+..||+.+|.+|.|..
T Consensus 238 v~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~-l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 238 VFSTGIRPQDKLATQCGLAVAPRGGIVINDS-CQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred EECCCcccCchHHhhcCccCCCCCcEEECCC-CcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 999999999888766666654 355666554 57889999999999753 2356778899999999998864
No 19
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.88 E-value=2.1e-22 Score=189.54 Aligned_cols=240 Identities=19% Similarity=0.272 Sum_probs=169.4
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceE-eCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccc
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSI-FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 120 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~-~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g 120 (396)
+-++.+++.--++..++..+ .+. ...+|++|+.+.+ +|+++++..+.||+||||+|+ .++.+.+|| ++.-
T Consensus 52 g~l~~~~i~~p~~~~~~~~~---~v~~~~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs--~~~~fgi~G~~E~a~ 124 (405)
T COG1252 52 GTLSESEIAIPLRALLRKSG---NVQFVQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGS--ETNYFGIPGAAEYAF 124 (405)
T ss_pred CCCChhheeccHHHHhcccC---ceEEEEEEEEEEcccCC--EEEeCCCccccccEEEEecCC--cCCcCCCCCHHHhCC
Confidence 44566788888888887554 133 3668999998766 777877667999999999999 899999999 3221
Q ss_pred --ceee-ccc--------CCCCCCCCC----CeEEEEcCCCcHHHHHHHHhcCCC-------------cEEEEeccCcee
Q psy2343 121 --EILH-SMD--------YKSPDQIRN----KRVLVVGAGNSGCDIAVDASHHSE-------------KVYHSTRRGYHY 172 (396)
Q Consensus 121 --~~~h-s~~--------~~~~~~~~~----k~VvVVG~G~sa~d~a~~l~~~~~-------------~V~l~~r~~~~~ 172 (396)
+.+. +.. +........ .+|+|||||.||+|+|.+|++... +|+++.+.+. +
T Consensus 125 ~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~-I 203 (405)
T COG1252 125 GLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR-I 203 (405)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch-h
Confidence 1000 000 011111111 269999999999999999987532 7888888753 2
Q ss_pred ecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC--CeEecC
Q psy2343 173 YPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG--DILPKD 250 (396)
Q Consensus 173 ~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g--~i~~~~ 250 (396)
+|. +|..+.. . ..+.+.+- +|.+..
T Consensus 204 Lp~-------------~~~~l~~-----~-----------------------------------a~~~L~~~GV~v~l~~ 230 (405)
T COG1252 204 LPM-------------FPPKLSK-----Y-----------------------------------AERALEKLGVEVLLGT 230 (405)
T ss_pred ccC-------------CCHHHHH-----H-----------------------------------HHHHHHHCCCEEEcCC
Confidence 221 1111111 1 11122222 444567
Q ss_pred CcceEeCCeEEecCCcE-ecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCc------
Q psy2343 251 DIKNLNGNIVHFVDDTH-IEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA------ 321 (396)
Q Consensus 251 ~i~~i~~~~v~~~dG~~-~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~------ 321 (396)
.|+++++++|++.+|.. +++|.||||+|.+++ |++.. ..++.+ .+++.+...+..+++|+||++||+...
T Consensus 231 ~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~ 309 (405)
T COG1252 231 PVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPV 309 (405)
T ss_pred ceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCC
Confidence 89999999999999995 999999999999987 56654 234443 478888899999999999999999743
Q ss_pred CchhhHHHHHHHHHHHHHhccccC
Q psy2343 322 AGLGDGLRLQGQFIRSYIQAFIRK 345 (396)
Q Consensus 322 ~~~~~~ae~qa~~~a~~l~~~~~l 345 (396)
.+..+.|.+||+++|++|...++.
T Consensus 310 P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 310 PPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CChhHHHHHHHHHHHHHHHHHhcC
Confidence 366789999999999999888876
No 20
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.88 E-value=1.2e-21 Score=193.66 Aligned_cols=225 Identities=18% Similarity=0.198 Sum_probs=149.5
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD 132 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~ 132 (396)
++..+++.++. ++.+ ++..++ .+.++|...+|+ ++.||+||||||+ .|..|++++.....++++.+....
T Consensus 100 ~~~~~~~~~v~--~~~g-~~~~~~--~~~~~v~~~~g~~~~~~~d~lviATGs--~p~~p~~~~~~~~~v~~~~~~~~~- 171 (461)
T PRK05249 100 RRGQYERNRVD--LIQG-RARFVD--PHTVEVECPDGEVETLTADKIVIATGS--RPYRPPDVDFDHPRIYDSDSILSL- 171 (461)
T ss_pred HHHHHHHCCCE--EEEE-EEEEec--CCEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCCCeEEcHHHhhch-
Confidence 33444445543 3333 333332 456778776664 5899999999998 888887666211234555444433
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 212 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (396)
...+|+|+|||+|.+|+|+|..+++.+.+|+++.|++.. +|.. .. .+...
T Consensus 172 ~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d~------------------~~~~~------- 221 (461)
T PRK05249 172 DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL-LSFL----DD------------------EISDA------- 221 (461)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-CCcC----CH------------------HHHHH-------
Confidence 235799999999999999999999999999999987632 1110 00 11111
Q ss_pred CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCe--EEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNI--VHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
+.+.+....|++ ...+++++ +++ +.+.+|+.+++|.||+|+|++|+...+
T Consensus 222 ------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 277 (461)
T PRK05249 222 ------------------------LSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGL 277 (461)
T ss_pred ------------------------HHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCC
Confidence 111111123333 34566664 333 456788889999999999999998754
Q ss_pred --Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 287 --DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 287 --~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+...+..+ ++.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus 278 ~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 278 NLENAGLEADSRGQLKVNEN-YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred CchhhCcEecCCCcEeeCCC-cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 44445543 344655544 57889999999999765567788999999999999875
No 21
>PRK14727 putative mercuric reductase; Provisional
Probab=99.88 E-value=8.4e-22 Score=194.99 Aligned_cols=202 Identities=11% Similarity=0.041 Sum_probs=136.7
Q ss_pred CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343 81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158 (396)
Q Consensus 81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~ 158 (396)
.+.+.|...+|. ++.||+||||||+ .|..|++||......+++.+.... ...+|+|+|||+|.+|+|+|..+++.
T Consensus 134 ~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~i~G~~~~~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~ 210 (479)
T PRK14727 134 GNTLVVRLHDGGERVLAADRCLIATGS--TPTIPPIPGLMDTPYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARL 210 (479)
T ss_pred CCEEEEEeCCCceEEEEeCEEEEecCC--CCCCCCCCCcCccceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 567888777764 5899999999999 899999998322233333222111 22468999999999999999999999
Q ss_pred CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343 159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL 238 (396)
Q Consensus 159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 238 (396)
+.+|+++.|.. .+|.. | . .+.+. +.
T Consensus 211 G~~Vtlv~~~~--~l~~~------d-------~---------~~~~~-------------------------------l~ 235 (479)
T PRK14727 211 GSRVTILARST--LLFRE------D-------P---------LLGET-------------------------------LT 235 (479)
T ss_pred CCEEEEEEcCC--CCCcc------h-------H---------HHHHH-------------------------------HH
Confidence 99999998753 22211 0 0 11111 11
Q ss_pred hcccCCCeEe--cCCcceEe--CCeE--EecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCC
Q psy2343 239 YHIGHGDILP--KDDIKNLN--GNIV--HFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNL 309 (396)
Q Consensus 239 ~~i~~g~i~~--~~~i~~i~--~~~v--~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~~ 309 (396)
+.+....|++ ...+++++ ++.+ .+.+| ++++|.||+|+|+.|+..+|. ...+..+ ++.+.+.+. +.++.
T Consensus 236 ~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-~~Ts~ 313 (479)
T PRK14727 236 ACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-METSA 313 (479)
T ss_pred HHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-eecCC
Confidence 1122223333 23455554 2333 33344 588999999999999988653 3345543 345666655 47899
Q ss_pred CcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 310 DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 310 p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|+||++||+.......+.|..||+.+|..+.|.
T Consensus 314 ~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 314 PDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred CCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 999999999876667788999999999999875
No 22
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.88 E-value=3.2e-22 Score=195.03 Aligned_cols=237 Identities=17% Similarity=0.190 Sum_probs=163.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE--------ccCcEEEcCEEEEcccCCCCCCCCCCCCCc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--------SNGKKKKYDFIAVCNGAQRVARYPNYSGYF 118 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~--------~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~ 118 (396)
..+++...++..++.+++. ....+|++|+.+++.+.+.. .++.++.||+||||||+ .|..|.+||.-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs--~~~~~~ipG~~ 134 (424)
T PTZ00318 60 EFRSICEPVRPALAKLPNR---YLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA--RPNTFNIPGVE 134 (424)
T ss_pred ChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc--ccCCCCCCCHH
Confidence 3456666677777666642 34679999998877666632 34567999999999999 88888888811
Q ss_pred ccceeecccCCC---------------------C-CCCCCCeEEEEcCCCcHHHHHHHHhcC--------------CCcE
Q psy2343 119 SGEILHSMDYKS---------------------P-DQIRNKRVLVVGAGNSGCDIAVDASHH--------------SEKV 162 (396)
Q Consensus 119 ~g~~~hs~~~~~---------------------~-~~~~~k~VvVVG~G~sa~d~a~~l~~~--------------~~~V 162 (396)
. ..+..+.+.+ . ...+.++|+|||+|.+|+|+|.+|+.. ..+|
T Consensus 135 e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~V 213 (424)
T PTZ00318 135 E-RAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKV 213 (424)
T ss_pred H-cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEE
Confidence 1 0111111100 0 011335999999999999999999863 4679
Q ss_pred EEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc
Q psy2343 163 YHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG 242 (396)
Q Consensus 163 ~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~ 242 (396)
+++++.+.. +|.. + . .+ +..+.+.+.
T Consensus 214 tlv~~~~~l-l~~~----~---------~---------~~-------------------------------~~~~~~~L~ 239 (424)
T PTZ00318 214 TVLEAGSEV-LGSF----D---------Q---------AL-------------------------------RKYGQRRLR 239 (424)
T ss_pred EEEcCCCcc-cccC----C---------H---------HH-------------------------------HHHHHHHHH
Confidence 999987532 1110 0 0 11 111122222
Q ss_pred CCCeEe--cCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEeccc
Q psy2343 243 HGDILP--KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVN 319 (396)
Q Consensus 243 ~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~ 319 (396)
+..|++ ...|++++++.|+++||+++++|.||+|+|.+++ +++....+..+ +|.+.+.+.+..+++|+||++||+.
T Consensus 240 ~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a 318 (424)
T PTZ00318 240 RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCA 318 (424)
T ss_pred HCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccc
Confidence 234554 4578899989999999999999999999999987 67665545443 4677777776668999999999997
Q ss_pred Cc-----CchhhHHHHHHHHHHHHHhcccc
Q psy2343 320 AA-----AGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 320 ~~-----~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
.. ......|..||+.+|++|.+.+.
T Consensus 319 ~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 319 ANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 53 34567899999999999987764
No 23
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.87 E-value=2.2e-21 Score=190.47 Aligned_cols=196 Identities=19% Similarity=0.207 Sum_probs=134.9
Q ss_pred EEEEccCcEEEcCEEEEcccCCCCCCCC-CCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcE
Q psy2343 85 EVELSNGKKKKYDFIAVCNGAQRVARYP-NYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKV 162 (396)
Q Consensus 85 ~V~~~~g~~~~~d~vvvAtG~~~~p~~P-~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V 162 (396)
+|.+ +++.+.||+||||||+ .|+.| .+|| .. .+++.++..... .+++|+|||+|.+|+|+|..++..+.+|
T Consensus 120 ~v~v-~~~~~~~d~vIiAtGs--~p~~p~~i~g~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~V 192 (450)
T TIGR01421 120 TVEV-NGRDYTAPHILIATGG--KPSFPENIPGAEL---GTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSET 192 (450)
T ss_pred EEEE-CCEEEEeCEEEEecCC--CCCCCCCCCCCce---eEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence 4444 4556899999999998 89988 8888 32 122323322222 3689999999999999999999999999
Q ss_pred EEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc
Q psy2343 163 YHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG 242 (396)
Q Consensus 163 ~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~ 242 (396)
+++.|.+... +.. + . .+.+ .+.+.+.
T Consensus 193 tli~~~~~il-~~~----d---------~---------~~~~-------------------------------~~~~~l~ 218 (450)
T TIGR01421 193 HLVIRHERVL-RSF----D---------S---------MISE-------------------------------TITEEYE 218 (450)
T ss_pred EEEecCCCCC-ccc----C---------H---------HHHH-------------------------------HHHHHHH
Confidence 9999876321 110 1 0 1111 1111122
Q ss_pred CCCeEec--CCcceEeC---C--eEEecCC-cEecCcEEEEccCCCCCCCCC--CcccccccC-CccccccccccCCCCc
Q psy2343 243 HGDILPK--DDIKNLNG---N--IVHFVDD-THIEVDTIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDN 311 (396)
Q Consensus 243 ~g~i~~~--~~i~~i~~---~--~v~~~dG-~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~ 311 (396)
...|++. ..++++++ + .+++++| +.+++|.||+|+|++|+..+| +...++.+. +.+.+.+. +.++.|+
T Consensus 219 ~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~ 297 (450)
T TIGR01421 219 KEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPG 297 (450)
T ss_pred HcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCC
Confidence 2234432 34556642 1 3667788 469999999999999998864 444455543 44555554 5789999
Q ss_pred EEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 312 IFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 312 l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
||++||+.......+.|..||+.+|..+.+.
T Consensus 298 IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 298 IYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred EEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 9999999876677889999999999999853
No 24
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.87 E-value=3.3e-21 Score=190.41 Aligned_cols=270 Identities=17% Similarity=0.155 Sum_probs=166.7
Q ss_pred CccccccCCCCCCCCCCceeeecCCCcccc----CCCCCCCCCCCCCChHHHHHHHHHHHH-----------HcCCCCce
Q psy2343 4 DLGGVWNSQASCGRVYPSLHLISPKFNTQV----PDYPMPDNYPVYPNHSMMLDYLRSYAK-----------KFDVYNHS 68 (396)
Q Consensus 4 ~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~----~~~p~p~~~~~~p~~~~~~~Yl~~~~~-----------~~~l~~~i 68 (396)
.+||+|.+. .|.|+-.+......+.+ ..|-.... ...+...++.+|.+++++ +.++. +
T Consensus 37 ~~GG~c~~~----gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~ 109 (462)
T PRK06416 37 KLGGTCLNR----GCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--I 109 (462)
T ss_pred ccccceeec----ccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E
Confidence 389999765 36666443333332221 11211111 123456778888655444 33433 3
Q ss_pred EeCcEEEEEEEeCCeEEEEEcc-CcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc-eeecccCCCCCCCCCCeEEEEcCC
Q psy2343 69 IFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE-ILHSMDYKSPDQIRNKRVLVVGAG 145 (396)
Q Consensus 69 ~~~t~V~~v~~~~~~~~V~~~~-g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~-~~hs~~~~~~~~~~~k~VvVVG~G 145 (396)
..+ +++.++ .+.++|...+ ++++.||+||||||+ .|..| || .+.+. ++++.+.... ...+|+|+|||+|
T Consensus 110 ~~g-~~~~~~--~~~~~v~~~~~~~~~~~d~lViAtGs--~p~~~--pg~~~~~~~v~~~~~~~~~-~~~~~~vvVvGgG 181 (462)
T PRK06416 110 IRG-EAKLVD--PNTVRVMTEDGEQTYTAKNIILATGS--RPREL--PGIEIDGRVIWTSDEALNL-DEVPKSLVVIGGG 181 (462)
T ss_pred EEE-EEEEcc--CCEEEEecCCCcEEEEeCEEEEeCCC--CCCCC--CCCCCCCCeEEcchHhhCc-cccCCeEEEECCC
Confidence 333 333332 3455665433 356899999999999 67654 45 34443 3343333222 2346899999999
Q ss_pred CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343 146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP 225 (396)
Q Consensus 146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 225 (396)
.+|+|+|..+++.+.+|+++.|.+.. +|.. . . .+..
T Consensus 182 ~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----~---------~---------~~~~--------------------- 217 (462)
T PRK06416 182 YIGVEFASAYASLGAEVTIVEALPRI-LPGE----D---------K---------EISK--------------------- 217 (462)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCc-CCcC----C---------H---------HHHH---------------------
Confidence 99999999999999999999987632 2211 0 0 0111
Q ss_pred CCcccCccCchhhhcccCCCeEe--cCCcceEeCC--e--EEecCC---cEecCcEEEEccCCCCCCCCC--Cccccccc
Q psy2343 226 LDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN--I--VHFVDD---THIEVDTIIYATGYNRHFPFI--DKEKLEWK 294 (396)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~--~--v~~~dG---~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~ 294 (396)
.+.+.+.+..|++ ...|++++++ . +.+.+| +.+++|.||+|+|.+|+..++ +...+..+
T Consensus 218 ----------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~ 287 (462)
T PRK06416 218 ----------LAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD 287 (462)
T ss_pred ----------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec
Confidence 1111121223443 3456666532 3 445566 568999999999999998875 34455555
Q ss_pred CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 295 LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 295 ~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.+.+.+..++ .++.|+||++||+.........|..||+.+|.++.+..
T Consensus 288 ~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 288 RGFIEVDEQL-RTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CCEEeECCCC-ccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 4556665554 58899999999998655678899999999999998753
No 25
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.87 E-value=1.3e-21 Score=189.30 Aligned_cols=223 Identities=15% Similarity=0.129 Sum_probs=152.1
Q ss_pred HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC-----CC
Q psy2343 60 KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD-----QI 134 (396)
Q Consensus 60 ~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~-----~~ 134 (396)
...++. ++.+++|..|+.++ ..|++++|+++.||+||||||+ .|+.|++++.....++......+.. ..
T Consensus 69 ~~~~i~--~~~g~~V~~id~~~--~~v~~~~g~~~~yd~LViATGs--~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~ 142 (396)
T PRK09754 69 QENNVH--LHSGVTIKTLGRDT--RELVLTNGESWHWDQLFIATGA--AARPLPLLDALGERCFTLRHAGDAARLREVLQ 142 (396)
T ss_pred HHCCCE--EEcCCEEEEEECCC--CEEEECCCCEEEcCEEEEccCC--CCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh
Confidence 345666 77889999998754 3677778888999999999999 7776666652222233322222211 12
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
.+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +++. ++. .+.+.
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~------------~~~---------~~~~~--------- 191 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATV-MGRN------------APP---------PVQRY--------- 191 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc-hhhh------------cCH---------HHHHH---------
Confidence 5799999999999999999999999999999987632 1110 000 01111
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC---eEEecCCcEecCcEEEEccCCCCCCCCCCcc
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN---IVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 289 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~---~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~ 289 (396)
+.+.+.+..|++ ...|++++.+ .+.+.||+++++|.||+|+|.+++..++...
T Consensus 192 ----------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~ 249 (396)
T PRK09754 192 ----------------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREA 249 (396)
T ss_pred ----------------------HHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhc
Confidence 111111123333 3456666532 3567899999999999999999997777655
Q ss_pred cccccCCccccccccccCCCCcEEEEecccCc---------CchhhHHHHHHHHHHHHHhccc
Q psy2343 290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---------AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---------~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.+..+ +++.+..+ +.++.|+||++||+... ...|+.|..||+.+|++|.|..
T Consensus 250 gl~~~-~gi~vd~~-~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 250 NLDTA-NGIVIDEA-CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred CCCcC-CCEEECCC-CccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 55544 45655554 46789999999998732 1346789999999999998763
No 26
>PRK14694 putative mercuric reductase; Provisional
Probab=99.86 E-value=7.9e-21 Score=187.71 Aligned_cols=235 Identities=15% Similarity=0.123 Sum_probs=152.6
Q ss_pred ChHHHHHHHHHHHHHcC-------CCC--ceE-eCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFD-------VYN--HSI-FNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNY 114 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~-------l~~--~i~-~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~ 114 (396)
+.+++.++.+..++.+. +.. .|. +..+|..++ .+.|+|++.+|. ++.||+||||||+ .|..|++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs--~p~~p~i 157 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGA--RPAEPPV 157 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCEEEEEecCCCeEEEECCEEEEeCCC--CCCCCCC
Confidence 45666666666555431 110 121 223444443 567999988763 6899999999999 8999999
Q ss_pred CCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343 115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194 (396)
Q Consensus 115 ~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 194 (396)
||.....++++.+.... ...+++|+|||+|.+|+|+|..+++.+.+|+++.+.. .+|.. ..
T Consensus 158 ~G~~~~~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~--~l~~~----~~------------ 218 (468)
T PRK14694 158 PGLAETPYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSR--VLSQE----DP------------ 218 (468)
T ss_pred CCCCCCceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC--CCCCC----CH------------
Confidence 98221234454332222 2347899999999999999999999999999998742 22211 00
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEe-cCCcEec
Q psy2343 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHF-VDDTHIE 269 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~-~dG~~~~ 269 (396)
.+.. .+.+.+....|++ ...+.+++. ..+.+ .++..++
T Consensus 219 ------~~~~-------------------------------~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~ 261 (468)
T PRK14694 219 ------AVGE-------------------------------AIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLR 261 (468)
T ss_pred ------HHHH-------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEE
Confidence 1111 1111111223333 334555543 22322 2344699
Q ss_pred CcEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 270 VDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+|.||+|+|.+|+..++. ...++.+++.+.+.++ +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 262 ~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 262 AEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH-LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred eCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC-cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 999999999999988763 2334444555666555 46789999999999876677788999999999999765
No 27
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.86 E-value=2e-20 Score=187.99 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=164.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
+++.++.+++++.++++++. + ++++|+.++.+++.+.|.+.++. +.+++||+|||+ .|+.|++|| .+.+..+
T Consensus 57 ~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~~~~~V~~~~g~-~~a~~lVlATGa--~p~~~~ipG~~~~~~~~v 130 (555)
T TIGR03143 57 TTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDGDIKTIKTARGD-YKTLAVLIATGA--SPRKLGFPGEEEFTGRGV 130 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecCCEEEEEecCCE-EEEeEEEECCCC--ccCCCCCCCHHHhCCceE
Confidence 46789999999999999976 4 58899999887677888886664 789999999999 889999999 5667777
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|.+..++...+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+.+..+ . ...
T Consensus 131 ~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~--------------------~-----~~~ 185 (555)
T TIGR03143 131 AYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCA--------------------K-----LIA 185 (555)
T ss_pred EEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccC--------------------H-----HHH
Confidence 776666666678999999999999999999999999999999997632100 0 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCe----EEe---cCCcEe----cC
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNI----VHF---VDDTHI----EV 270 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~----v~~---~dG~~~----~~ 270 (396)
..+. ...+|+ ....|.++.++. +.+ .+|+.. ++
T Consensus 186 ~~~~----------------------------------~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~ 231 (555)
T TIGR03143 186 EKVK----------------------------------NHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPK 231 (555)
T ss_pred HHHH----------------------------------hCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccc
Confidence 1111 111233 334566665432 222 356542 36
Q ss_pred cE----EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHh
Q psy2343 271 DT----IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 271 D~----VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~ 340 (396)
|. ||+|+|++|+..++.. .+..+ ++.+.+.. .+.++.|+||++||+... ...+..|..||+.+|..+.
T Consensus 232 D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 232 DAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 66 9999999999988765 34444 35565544 457889999999998642 2345567888888887664
No 28
>PRK12831 putative oxidoreductase; Provisional
Probab=99.86 E-value=6.3e-21 Score=187.36 Aligned_cols=242 Identities=17% Similarity=0.148 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
+++.++..++++++++. +++++.|.. .++.++. +...||+||||||+. .|+.|++|| ...| ++++.
T Consensus 191 ~~~~~~~~~~~~~~gv~--i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~-~~~~l~ipG~~~~g-V~~~~ 258 (464)
T PRK12831 191 ETVVKKEIENIKKLGVK--IETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAG-LPKFMGIPGENLNG-VFSAN 258 (464)
T ss_pred cHHHHHHHHHHHHcCCE--EEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCC-CCCCCCCCCcCCcC-cEEHH
Confidence 45778888888888987 888886621 2333332 224699999999983 578888888 4333 33332
Q ss_pred cC----------C---CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccc
Q psy2343 127 DY----------K---SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 193 (396)
Q Consensus 127 ~~----------~---~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 193 (396)
++ . +.....+|+|+|||+|++|+|+|..+.+.+.+|+++.|+....+|.. .
T Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~----------------~ 322 (464)
T PRK12831 259 EFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPAR----------------V 322 (464)
T ss_pred HHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----------------H
Confidence 22 1 11235789999999999999999999999888999999763222211 0
Q ss_pred cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEe-cC-Cc--ceEeCCe---EEecC
Q psy2343 194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILP-KD-DI--KNLNGNI---VHFVD 264 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~-~~-~i--~~i~~~~---v~~~d 264 (396)
. .+ .... ..|+. ...+....+.+ ..|+++- .- .+ ...+.++ -...+
T Consensus 323 ~------e~-~~a~--------~eGV~----------i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~ 377 (464)
T PRK12831 323 E------EV-HHAK--------EEGVI----------FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIE 377 (464)
T ss_pred H------HH-HHHH--------HcCCE----------EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecC
Confidence 0 00 0000 00110 00000000111 0112210 00 00 0000000 01113
Q ss_pred Cc--EecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHh
Q psy2343 265 DT--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 265 G~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~ 340 (396)
|+ .+++|.||+|+|+.++..++.. ..+..+ ++.+.+....+.|+.|+||++||+..+...+..|..+|+.+|..+.
T Consensus 378 g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 378 GSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33 4899999999999999887765 345543 3556666555789999999999998766677889999999998887
Q ss_pred ccc
Q psy2343 341 AFI 343 (396)
Q Consensus 341 ~~~ 343 (396)
..+
T Consensus 458 ~~L 460 (464)
T PRK12831 458 EYL 460 (464)
T ss_pred HHh
Confidence 654
No 29
>PRK06116 glutathione reductase; Validated
Probab=99.86 E-value=1.8e-20 Score=184.43 Aligned_cols=220 Identities=18% Similarity=0.145 Sum_probs=148.4
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQI 134 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~ 134 (396)
++...++.++. +..+ +++.++ ..+|++ +++++.||+||||||. .|+.|++||.. .++++.++.... .
T Consensus 99 ~~~~l~~~gv~--~~~g-~~~~v~----~~~v~~-~g~~~~~d~lViATGs--~p~~p~i~g~~--~~~~~~~~~~~~-~ 165 (450)
T PRK06116 99 YRNGLENNGVD--LIEG-FARFVD----AHTVEV-NGERYTADHILIATGG--RPSIPDIPGAE--YGITSDGFFALE-E 165 (450)
T ss_pred HHHHHHhCCCE--EEEE-EEEEcc----CCEEEE-CCEEEEeCEEEEecCC--CCCCCCCCCcc--eeEchhHhhCcc-c
Confidence 33334445554 4333 344443 235666 6667999999999998 89999998821 234444333222 2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
.+++|+|||+|.+|+|+|..+++.+.+|+++.|++.. ++.. .. .+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~----~~------------------~~~~---------- 212 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP-LRGF----DP------------------DIRE---------- 212 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-cccc----CH------------------HHHH----------
Confidence 4689999999999999999999999999999987632 1110 00 1111
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C---eEEecCCcEecCcEEEEccCCCCCCCCC-
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N---IVHFVDDTHIEVDTIIYATGYNRHFPFI- 286 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~---~v~~~dG~~~~~D~VI~aTG~~~~~~~l- 286 (396)
.+.+.+.+..|++ ...|.+++. + .|.+.+|+++++|.||+|+|++|+..+|
T Consensus 213 ---------------------~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~ 271 (450)
T PRK06116 213 ---------------------TLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLG 271 (450)
T ss_pred ---------------------HHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCC
Confidence 1112222223443 345666642 2 3667789889999999999999998854
Q ss_pred -Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 287 -DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 287 -~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+...+..+ ++.+.+.++ +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus 272 l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 272 LENAGVKLNEKGYIIVDEY-QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred chhcCceECCCCcEecCCC-CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 44445554 345666655 46899999999999765667889999999999999874
No 30
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.86 E-value=2.5e-20 Score=183.00 Aligned_cols=226 Identities=13% Similarity=0.087 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccC
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDY 128 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~ 128 (396)
++.++++..+++.+++ +..+ +|..++. +...|. .+|+++.||+||||||+ .|..|++|| .. .+.+.+.
T Consensus 91 ~~~~~~~~~l~~~gV~--~~~g-~~~~v~~--~~v~v~-~~g~~~~~d~lIiATGs--~p~~p~i~G~~~---~~~~~~~ 159 (446)
T TIGR01424 91 RLSGLYKRLLANAGVE--LLEG-RARLVGP--NTVEVL-QDGTTYTAKKILIAVGG--RPQKPNLPGHEL---GITSNEA 159 (446)
T ss_pred HHHHHHHHHHHhCCcE--EEEE-EEEEecC--CEEEEe-cCCeEEEcCEEEEecCC--cCCCCCCCCccc---eechHHh
Confidence 4556666777777765 4433 6666653 344443 35667899999999998 899999998 32 1222222
Q ss_pred CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343 129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 208 (396)
Q Consensus 129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (396)
... ...+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|. .+. .+...
T Consensus 160 ~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~-l~~----~d~------------------~~~~~--- 212 (446)
T TIGR01424 160 FHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI-LRG----FDD------------------DMRAL--- 212 (446)
T ss_pred hcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC-Ccc----cCH------------------HHHHH---
Confidence 211 124789999999999999999999999999999987531 111 000 11111
Q ss_pred HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCC
Q psy2343 209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRH 282 (396)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~ 282 (396)
+.+.+.+..|++ ...+.+++. + .|.+.+|+.+++|.||+|||++|+
T Consensus 213 ----------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 213 ----------------------------LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred ----------------------------HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 111122223333 334556642 2 356678888999999999999999
Q ss_pred CCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 283 FPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 283 ~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
...| +...++.+. +.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 265 ~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 265 TKGLGLEAAGVELNDAGAIAVDEY-SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred CCcCCccccCeEECCCCcEEeCCC-CccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 8753 444455443 44666555 47899999999999876677889999999999999874
No 31
>PRK07846 mycothione reductase; Reviewed
Probab=99.86 E-value=2.3e-20 Score=183.18 Aligned_cols=276 Identities=11% Similarity=0.071 Sum_probs=170.9
Q ss_pred CCccccccCCCCCCCCCCceeeecCCCcccc----CCCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-CceE----eCcE
Q psy2343 3 SDLGGVWNSQASCGRVYPSLHLISPKFNTQV----PDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVY-NHSI----FNTE 73 (396)
Q Consensus 3 ~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~----~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~-~~i~----~~t~ 73 (396)
+.+||++-+. .|-|+-.+..++..... +.|-.....+ -....++.++.+...+++.-. .... .+.+
T Consensus 31 ~~~GGtC~n~----GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 105 (451)
T PRK07846 31 GTFGGTCLNV----GCIPTKMFVYAADVARTIREAARLGVDAELD-GVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNID 105 (451)
T ss_pred CCCCCcccCc----CcchhHHHHHHHHHHHHHHHHHhCCccCCCC-cCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcE
Confidence 4689998776 36665543333332211 1111110111 235667777777776664211 0011 1222
Q ss_pred EEEEEE-eCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343 74 VINLEQ-YEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152 (396)
Q Consensus 74 V~~v~~-~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a 152 (396)
|..=+- -.+..+|++.+|+++.||+||||||+ .|..|+++|...-.+.++.+.... ...+|+|+|||+|.+|+|+|
T Consensus 106 ~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs--~p~~p~i~g~~~~~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A 182 (451)
T PRK07846 106 VYRGHARFIGPKTLRTGDGEEITADQVVIAAGS--RPVIPPVIADSGVRYHTSDTIMRL-PELPESLVIVGGGFIAAEFA 182 (451)
T ss_pred EEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC--CCCCCCCCCcCCccEEchHHHhhh-hhcCCeEEEECCCHHHHHHH
Confidence 222110 02344677777777999999999998 899999988211122233222221 23468999999999999999
Q ss_pred HHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCc
Q psy2343 153 VDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI 232 (396)
Q Consensus 153 ~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (396)
..+++.+.+|+++.|++... |.. +. .+...+
T Consensus 183 ~~l~~~G~~Vtli~~~~~ll-~~~----d~------------------~~~~~l-------------------------- 213 (451)
T PRK07846 183 HVFSALGVRVTVVNRSGRLL-RHL----DD------------------DISERF-------------------------- 213 (451)
T ss_pred HHHHHcCCeEEEEEcCCccc-ccc----CH------------------HHHHHH--------------------------
Confidence 99999999999999976321 110 00 111110
Q ss_pred cCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccc
Q psy2343 233 MNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIH 303 (396)
Q Consensus 233 ~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~ 303 (396)
.+.+.. +|++ ...+++++++ .|.+.+|+.+++|.||+|||++|+.+++. ...++.+ ++.+.+.++
T Consensus 214 -----~~l~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~ 287 (451)
T PRK07846 214 -----TELASK-RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEY 287 (451)
T ss_pred -----HHHHhc-CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCC
Confidence 111111 2333 3456666432 35667888999999999999999999864 3345553 355666655
Q ss_pred cccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 304 IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 304 ~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+.++.|+||++||+.....+.+.|..||+.+|.++.+.
T Consensus 288 -~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 288 -QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred -cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 46899999999999876667789999999999999864
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.86 E-value=3.6e-20 Score=182.78 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=152.8
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEE--EeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 129 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~--~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~ 129 (396)
+++..+++++++ +..+ ++..++ .+.+...|++.+|+ ++.||+||||||+ .|..|+.++.....++++.+..
T Consensus 97 ~~~~~l~~~gV~--~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~~~v~~~~~~~ 171 (466)
T PRK07845 97 DIRARLEREGVR--VIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA--SPRILPTAEPDGERILTWRQLY 171 (466)
T ss_pred HHHHHHHHCCCE--EEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC--CCCCCCCCCCCCceEEeehhhh
Confidence 344445555654 4333 455544 33566777776765 6899999999999 7876655442222355555544
Q ss_pred CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343 130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 209 (396)
Q Consensus 130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (396)
+... .+++|+|||+|.+|+|+|..|++.+.+|+++.+.+. ++|.. .. .+.
T Consensus 172 ~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-~l~~~----d~------------------~~~------ 221 (466)
T PRK07845 172 DLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-VLPGE----DA------------------DAA------ 221 (466)
T ss_pred cccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-CCCCC----CH------------------HHH------
Confidence 4322 368999999999999999999999999999998753 11211 00 000
Q ss_pred hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCe--EEecCCcEecCcEEEEccCCCCCC
Q psy2343 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNI--VHFVDDTHIEVDTIIYATGYNRHF 283 (396)
Q Consensus 210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~ 283 (396)
..+.+.+....|++ ...+.+++ +++ +.+.+|+++++|.||+|+|++|+.
T Consensus 222 -------------------------~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 222 -------------------------EVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -------------------------HHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 11111222223443 23456663 233 566789899999999999999998
Q ss_pred CC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 284 PF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 284 ~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.. ++...++.+. +.+.+.+. +.++.|+||++||+.....+.+.|..||+.++..+.+.
T Consensus 277 ~~l~l~~~gl~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 277 AGLGLEEAGVELTPSGHITVDRV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred CCCCchhhCceECCCCcEeECCC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 76 4444555543 55666654 46899999999999876677889999999999998874
No 33
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.85 E-value=6.3e-21 Score=182.80 Aligned_cols=234 Identities=18% Similarity=0.219 Sum_probs=158.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM 126 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~ 126 (396)
+.+++...+++++++++++ +.. .+|++|+.+++ +|.+++|+++.||+||||||+ .|..|.+||.-. .++...
T Consensus 52 ~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~--~~~~~~i~g~~~-~~~~~~ 123 (364)
T TIGR03169 52 SLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDRR--KVLLANRPPLSYDVLSLDVGS--TTPLSGVEGAAD-LAVPVK 123 (364)
T ss_pred CHHHhcccHHHHHHhcCCE--EEE-EEEEEEecccC--EEEECCCCcccccEEEEccCC--CCCCCCCCcccc-cccccC
Confidence 3467777888888888876 444 58999988655 688888888999999999999 888998888111 111100
Q ss_pred c----------CCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcC------CCcEEEEeccCceeecCCCCCCChhHHHHh
Q psy2343 127 D----------YKSPD--QIRNKRVLVVGAGNSGCDIAVDASHH------SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 188 (396)
Q Consensus 127 ~----------~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~------~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~ 188 (396)
. +.... ...+|+|+|||+|.+|+|+|.+|++. ..+|+++ +.+. +++.. +
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~-~l~~~----~------- 190 (364)
T TIGR03169 124 PIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGAS-LLPGF----P------- 190 (364)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCc-ccccC----C-------
Confidence 0 10100 12468999999999999999999853 2478888 3321 11110 0
Q ss_pred hCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCCc
Q psy2343 189 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDDT 266 (396)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG~ 266 (396)
. .+ ...+.+.+.+..|++ ...+++++++.|.+.+|.
T Consensus 191 --~---------~~-------------------------------~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~ 228 (364)
T TIGR03169 191 --A---------KV-------------------------------RRLVLRLLARRGIEVHEGAPVTRGPDGALILADGR 228 (364)
T ss_pred --H---------HH-------------------------------HHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCC
Confidence 0 00 011112222234554 346778877789999999
Q ss_pred EecCcEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEecccCc-----CchhhHHHHHHHHHHHHHh
Q psy2343 267 HIEVDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-----AGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 267 ~~~~D~VI~aTG~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~-----~~~~~~ae~qa~~~a~~l~ 340 (396)
++++|.||+|+|.+++ +++....+.. +++.+.+...+..+++|+||++||+... ......|..||+.+|++|.
T Consensus 229 ~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 229 TLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred EEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 9999999999999987 5555444444 3456666665544589999999999742 1244568999999999887
Q ss_pred cccc
Q psy2343 341 AFIR 344 (396)
Q Consensus 341 ~~~~ 344 (396)
..+.
T Consensus 308 ~~l~ 311 (364)
T TIGR03169 308 ASLR 311 (364)
T ss_pred HHhc
Confidence 6654
No 34
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.85 E-value=1.7e-20 Score=185.28 Aligned_cols=271 Identities=19% Similarity=0.182 Sum_probs=164.7
Q ss_pred CCccccccCCCCCCCCCCceeeecCCCc----cccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCce-E--e-CcEE
Q psy2343 3 SDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHS-I--F-NTEV 74 (396)
Q Consensus 3 ~~iGG~W~~~~~~~~~y~~~~~~~~~~~----~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i-~--~-~t~V 74 (396)
+.+||+|.+. .|+|+-.+..++.. ..++.|..+.. ....+.+++.++++.+++++.-. + . + ...|
T Consensus 35 ~~~GG~~~~~----gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v 107 (460)
T PRK06292 35 GPLGGTCLNV----GCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFKKVMARVRRERDRFVGG--VVEGLEKKPKI 107 (460)
T ss_pred Cccccceecc----ceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHHHHHHHHHHHHHHHhcc--hHHHHHhhCCC
Confidence 5689999865 25654332222211 11223322211 13567889999999988876422 2 1 1 1112
Q ss_pred EEEEE---eCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCC--ccc-ceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343 75 INLEQ---YEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSG-EILHSMDYKSPDQIRNKRVLVVGAGNSG 148 (396)
Q Consensus 75 ~~v~~---~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~--~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa 148 (396)
.-+.. ..+.+.|.+ +++++.||+||||||. . .|.+||. ..+ .++++.+... ....+|+|+|||+|.+|
T Consensus 108 ~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs--~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g 181 (460)
T PRK06292 108 DKIKGTARFVDPNTVEV-NGERIEAKNIVIATGS--R--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIG 181 (460)
T ss_pred EEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCC--C--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHH
Confidence 21211 122234555 5667999999999999 4 4455551 122 3334333221 13357899999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy2343 149 CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDA 228 (396)
Q Consensus 149 ~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 228 (396)
+|+|..+++.+.+|+++.|.+.. +|.. . . .+..
T Consensus 182 ~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d---------~---------~~~~------------------------ 214 (460)
T PRK06292 182 LELGQALSRLGVKVTVFERGDRI-LPLE----D---------P---------EVSK------------------------ 214 (460)
T ss_pred HHHHHHHHHcCCcEEEEecCCCc-Ccch----h---------H---------HHHH------------------------
Confidence 99999999999999999987632 1110 0 0 1111
Q ss_pred ccCccCchhhhcccCCCeEe--cCCcceEeCC---eEEe--cCC--cEecCcEEEEccCCCCCCCCC--Cccccccc-CC
Q psy2343 229 AHPIMNSQILYHIGHGDILP--KDDIKNLNGN---IVHF--VDD--THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LG 296 (396)
Q Consensus 229 ~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~---~v~~--~dG--~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~ 296 (396)
.+.+.+... |++ ...+.+++.. .+.+ .+| +++++|.||+|+|.+|+.++| +...+..+ ++
T Consensus 215 -------~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g 286 (460)
T PRK06292 215 -------QAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERG 286 (460)
T ss_pred -------HHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCC
Confidence 111122222 333 3455666432 3443 344 458999999999999998854 34445443 34
Q ss_pred ccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 297 IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 297 ~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 287 ~i~vd~~-~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 287 RPVVDEH-TQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred cEeECCC-cccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 4555555 46799999999999876667789999999999999874
No 35
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.85 E-value=2.8e-20 Score=182.43 Aligned_cols=225 Identities=20% Similarity=0.152 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
..++.+.....+++.++. +++++.|. ..|++++.. ..||+||||||+. .|+.|.+|| ...| ++++.
T Consensus 182 ~~~~~~~~~~~l~~~gv~--~~~~~~v~--------~~v~~~~~~-~~yd~viiAtGa~-~p~~~~ipG~~~~g-v~~~~ 248 (449)
T TIGR01316 182 PKEIVVTEIKTLKKLGVT--FRMNFLVG--------KTATLEELF-SQYDAVFIGTGAG-LPKLMNIPGEELCG-VYSAN 248 (449)
T ss_pred CHHHHHHHHHHHHhCCcE--EEeCCccC--------CcCCHHHHH-hhCCEEEEeCCCC-CCCcCCCCCCCCCC-cEEHH
Confidence 356667776777778876 77776541 134443332 4699999999973 588888888 5444 34433
Q ss_pred cCC--------------CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcc
Q psy2343 127 DYK--------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 192 (396)
Q Consensus 127 ~~~--------------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 192 (396)
++. ......||+|+|||+|++|+|+|..+++.+.+|+++.|++...+|..
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~---------------- 312 (449)
T TIGR01316 249 DFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR---------------- 312 (449)
T ss_pred HHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----------------
Confidence 221 11134689999999999999999999999989999999863222111
Q ss_pred ccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC---C---eEEec---
Q psy2343 193 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---N---IVHFV--- 263 (396)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~---~---~v~~~--- 263 (396)
. ...+.+. ..|+ ++.....+.++.+ + +|.+.
T Consensus 313 --~-----~~~~~l~--------~~GV-------------------------~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 352 (449)
T TIGR01316 313 --V-----EEIAHAE--------EEGV-------------------------KFHFLCQPVEIIGDEEGNVRAVKFRKMD 352 (449)
T ss_pred --H-----HHHHHHH--------hCCC-------------------------EEEeccCcEEEEEcCCCeEEEEEEEEEE
Confidence 0 0001100 0011 1111112222211 0 11221
Q ss_pred ------CC-----------cEecCcEEEEccCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchh
Q psy2343 264 ------DD-----------THIEVDTIIYATGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLG 325 (396)
Q Consensus 264 ------dG-----------~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~ 325 (396)
+| ..+++|.||+|+|+.++..+++...+..+. +.+.+.. .+.++.|+||++||+......+
T Consensus 353 ~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g~~~v 431 (449)
T TIGR01316 353 CQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILGAATV 431 (449)
T ss_pred ecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCCcHHH
Confidence 12 258999999999999998887765555543 4455544 4578899999999998666677
Q ss_pred hHHHHHHHHHHHHHhcc
Q psy2343 326 DGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 326 ~~ae~qa~~~a~~l~~~ 342 (396)
..|..||+.+|..+...
T Consensus 432 ~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 432 IRAMGQGKRAAKSINEY 448 (449)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999999988653
No 36
>PRK13748 putative mercuric reductase; Provisional
Probab=99.85 E-value=4e-20 Score=187.14 Aligned_cols=273 Identities=14% Similarity=0.109 Sum_probs=164.8
Q ss_pred CCccccccCCCCCCCCCCceeeecCCCccc-cCCCCC----CCCCCCCCChHHHHHHHHHHHHHcCC-------CC--ce
Q psy2343 3 SDLGGVWNSQASCGRVYPSLHLISPKFNTQ-VPDYPM----PDNYPVYPNHSMMLDYLRSYAKKFDV-------YN--HS 68 (396)
Q Consensus 3 ~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~-~~~~p~----p~~~~~~p~~~~~~~Yl~~~~~~~~l-------~~--~i 68 (396)
+.+||+|.+. .|+|+-.+..+..... ....++ +...+ -...+.+.++.+...+.+.- .. .|
T Consensus 130 ~~~GG~c~n~----gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 204 (561)
T PRK13748 130 GTIGGTCVNV----GCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TIDRSRLLAQQQARVDELRHAKYEGILDGNPAI 204 (561)
T ss_pred Ccceeecccc----CccccHHHHHHHHHHHHHhcccccCCccCCCC-ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCe
Confidence 3789999876 3777655433332211 111121 11111 12455666665555443211 00 11
Q ss_pred Ee-CcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCC
Q psy2343 69 IF-NTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAG 145 (396)
Q Consensus 69 ~~-~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G 145 (396)
.+ ..++..++ .+.+.|++.+|. ++.||+||||||+ .|.+|++||.....++++.+... ....+|+|+|||+|
T Consensus 205 ~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~~~~~~~~~~~-~~~~~~~vvViGgG 279 (561)
T PRK13748 205 TVLHGEARFKD--DQTLIVRLNDGGERVVAFDRCLIATGA--SPAVPPIPGLKETPYWTSTEALV-SDTIPERLAVIGSS 279 (561)
T ss_pred EEEEEEEEEec--CCEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCccceEccHHHhh-cccCCCeEEEECCC
Confidence 11 22232222 556778776653 5899999999999 89999999821112233322111 12346899999999
Q ss_pred CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343 146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP 225 (396)
Q Consensus 146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 225 (396)
.+|+|+|..+++.+.+|+++.|.. .+|.. .. .+.+.
T Consensus 280 ~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~----d~------------------~~~~~-------------------- 315 (561)
T PRK13748 280 VVALELAQAFARLGSKVTILARST--LFFRE----DP------------------AIGEA-------------------- 315 (561)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCc--ccccc----CH------------------HHHHH--------------------
Confidence 999999999999999999999853 22211 00 11111
Q ss_pred CCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeE--EecCCcEecCcEEEEccCCCCCCCCC--CcccccccC-C
Q psy2343 226 LDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIV--HFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWKL-G 296 (396)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v--~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~-~ 296 (396)
+.+.+....|++ ...+++++. +.+ .+.++ .+++|.||+|+|++|+..++ +...++.+. +
T Consensus 316 -----------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g 383 (561)
T PRK13748 316 -----------VTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQG 383 (561)
T ss_pred -----------HHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCC
Confidence 111111223333 334555542 233 33344 68999999999999998764 444555543 4
Q ss_pred ccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 297 IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 297 ~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus 384 ~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 384 AIVIDQG-MRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred CEeECCC-cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 5666554 47899999999999866667788999999999999764
No 37
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.85 E-value=2.4e-20 Score=179.89 Aligned_cols=275 Identities=19% Similarity=0.203 Sum_probs=174.7
Q ss_pred CccccccCCCCCCCCCCceeeecCCCccccCC-----CCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCc-EEEEE
Q psy2343 4 DLGGVWNSQASCGRVYPSLHLISPKFNTQVPD-----YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNT-EVINL 77 (396)
Q Consensus 4 ~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~-----~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t-~V~~v 77 (396)
.+||++.+. .|-|+-.+..++..+.... |-.....+ -...+++.+..+...+...-.-.-.+.. .|+-+
T Consensus 38 ~lGGtCln~----GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi 112 (454)
T COG1249 38 RLGGTCLNV----GCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVI 112 (454)
T ss_pred CcCceEEee----CccccHHHHHHHHHHHHHhhcccccceecCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEE
Confidence 689999876 4888877766666542111 11111111 1233444444444322221100000111 22222
Q ss_pred EEe---CCeEEEEEcc--CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343 78 EQY---EDIWEVELSN--GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152 (396)
Q Consensus 78 ~~~---~~~~~V~~~~--g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a 152 (396)
.-. .+..+|.+.+ .++++++++|||||+ +|..|+++|-....++.+.+..... .-.|+++|||||..|+|+|
T Consensus 113 ~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS--~p~~~~~~~~~~~~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a 189 (454)
T COG1249 113 RGEARFVDPHTVEVTGEDKETITADNIIIATGS--RPRIPPGPGIDGARILDSSDALFLL-ELPKSLVIVGGGYIGLEFA 189 (454)
T ss_pred EEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC--CCcCCCCCCCCCCeEEechhhcccc-cCCCEEEEECCCHHHHHHH
Confidence 211 1223444443 367999999999999 9999988872222355555533333 3468999999999999999
Q ss_pred HHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCc
Q psy2343 153 VDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI 232 (396)
Q Consensus 153 ~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (396)
..+++.+.+||++.|.+.. +|.. . +.
T Consensus 190 ~~~~~LG~~VTiie~~~~i-Lp~~----D-------------------------------------------------~e 215 (454)
T COG1249 190 SVFAALGSKVTVVERGDRI-LPGE----D-------------------------------------------------PE 215 (454)
T ss_pred HHHHHcCCcEEEEecCCCC-CCcC----C-------------------------------------------------HH
Confidence 9999999999999998742 2211 0 11
Q ss_pred cCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCc--EecCcEEEEccCCCCCCCC--CCcccccccC-Cccccc
Q psy2343 233 MNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDT--HIEVDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLF 301 (396)
Q Consensus 233 ~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~--~~~~D~VI~aTG~~~~~~~--l~~~~~~~~~-~~~~l~ 301 (396)
+++.+...+.++.+++ ...+++++.+ .+.+++|. .+++|.|++|||.+|+.+- |+..+++.++ +.+.+.
T Consensus 216 i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD 295 (454)
T COG1249 216 ISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD 295 (454)
T ss_pred HHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC
Confidence 1222233333334443 3456666532 36777877 6889999999999999883 5555666655 567777
Q ss_pred cccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343 302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 302 ~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~ 341 (396)
..+.+++|+||++||+.....+.+.|..|++.+|.++.|
T Consensus 296 -~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 296 -DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred -CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 777888999999999976666889999999999999997
No 38
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.84 E-value=1.4e-20 Score=185.84 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=135.9
Q ss_pred EEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc
Q psy2343 84 WEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK 161 (396)
Q Consensus 84 ~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~ 161 (396)
.+|++.++. .+.||+||||||. .|..|++|| ... .++++.+...... ..++|+|||+|.+|+|+|..+++.+.+
T Consensus 116 ~~v~v~~g~~~~~~~~lIiATGs--~p~~p~i~G~~~~-~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~ 191 (463)
T TIGR02053 116 KTVKVDLGREVRGAKRFLIATGA--RPAIPPIPGLKEA-GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSE 191 (463)
T ss_pred CEEEEcCCeEEEEeCEEEEcCCC--CCCCCCCCCcccC-ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 466666653 5789999999998 899999998 322 2455544433222 358999999999999999999999999
Q ss_pred EEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc
Q psy2343 162 VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI 241 (396)
Q Consensus 162 V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i 241 (396)
|+++.|.+. ++|.. .. .+... +.+.+
T Consensus 192 Vtli~~~~~-~l~~~----d~------------------~~~~~-------------------------------l~~~l 217 (463)
T TIGR02053 192 VTILQRSDR-LLPRE----EP------------------EISAA-------------------------------VEEAL 217 (463)
T ss_pred EEEEEcCCc-CCCcc----CH------------------HHHHH-------------------------------HHHHH
Confidence 999999763 22211 00 01111 11111
Q ss_pred cCCCeEe--cCCcceEeCC----eEEec---CCcEecCcEEEEccCCCCCCCC--CCccccccc-CCccccccccccCCC
Q psy2343 242 GHGDILP--KDDIKNLNGN----IVHFV---DDTHIEVDTIIYATGYNRHFPF--IDKEKLEWK-LGIPDLFIHIAPRNL 309 (396)
Q Consensus 242 ~~g~i~~--~~~i~~i~~~----~v~~~---dG~~~~~D~VI~aTG~~~~~~~--l~~~~~~~~-~~~~~l~~~~~~~~~ 309 (396)
....|++ ...|++++.+ .+.+. ++.++++|.||+|+|.+|+... ++...++.+ .+.+.+... +.++.
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~ 296 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-LRTSN 296 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-ccCCC
Confidence 1223333 2345555432 23343 2346999999999999999873 444445543 345666644 47899
Q ss_pred CcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 310 DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 310 p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|+||++||+.....+.+.|..||+.+|.++.+.
T Consensus 297 ~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 297 PGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 999999999876667789999999999999875
No 39
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.84 E-value=1.4e-21 Score=183.73 Aligned_cols=124 Identities=27% Similarity=0.438 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC----CeEEEEEc----cCcEEEcCEEEEcccCCCCCCCCCCC
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE----DIWEVELS----NGKKKKYDFIAVCNGAQRVARYPNYS 115 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~----~~~~V~~~----~g~~~~~d~vvvAtG~~~~p~~P~~~ 115 (396)
.+|++.|+.+|++|.+++++.. ++|+++|++|+++. ..|+|++. ++.++.++.||||||. .|.+|...
T Consensus 90 ~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~--~P~iP~~~ 165 (341)
T PF13434_consen 90 FFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG--QPRIPEWF 165 (341)
T ss_dssp SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE------EE---GGG
T ss_pred CCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC--CCCCCcch
Confidence 5789999999999999999844 99999999999973 25999984 3456899999999997 89999766
Q ss_pred CCc--ccceeecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCce
Q psy2343 116 GYF--SGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYH 171 (396)
Q Consensus 116 g~~--~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~ 171 (396)
..+ ...++|+++|.... ..++++|+|||||+||+|++..|.+.. .+|++++|++.+
T Consensus 166 ~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 166 QDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp GGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred hhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 533 47899999987653 567899999999999999999999874 489999998743
No 40
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=2e-19 Score=164.92 Aligned_cols=282 Identities=17% Similarity=0.180 Sum_probs=162.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCeEE--EEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcc
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWE--VELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFS 119 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~~~--V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~ 119 (396)
.+|++.|+.+|++|.|+++ +.++|+++|++|... +.... +.+.++.+++++.|||++|. +|.+|+.--.+.
T Consensus 93 f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~--~P~IP~~f~~l~ 167 (436)
T COG3486 93 FHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT--QPYIPPCFRSLI 167 (436)
T ss_pred ccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC--CcCCChHHhCcC
Confidence 4689999999999999998 348999999988443 33344 56667778999999999999 999995333333
Q ss_pred -cceeecccCCCCC-CCCCCe-EEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCceeecCCCCCCChhH-------H
Q psy2343 120 -GEILHSMDYKSPD-QIRNKR-VLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQ-------W 185 (396)
Q Consensus 120 -g~~~hs~~~~~~~-~~~~k~-VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~~~~p~~~~~~~~~~-------~ 185 (396)
+.++|+++|.... +..+|+ |+|||+|+||+|+..+|... ..++.|++|+..+. |.....+.... +
T Consensus 168 ~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~-p~d~Skf~~e~F~P~y~dy 246 (436)
T COG3486 168 GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL-PMDYSKFGLEYFSPEYTDY 246 (436)
T ss_pred ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC-ccccchhhhhhcCchhHHH
Confidence 4899999998543 566666 99999999999999998764 33588899987542 21111000110 1
Q ss_pred HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC--CCeEec--CCcceEeCC--e
Q psy2343 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH--GDILPK--DDIKNLNGN--I 259 (396)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--g~i~~~--~~i~~i~~~--~ 259 (396)
+..+|..-++ .+..+ . . ..|.-... ....-+....+.+.+.. ..+.+. +++++++.. +
T Consensus 247 fy~l~~~~r~-----~ll~~----~--~-~~YkgI~~----~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g 310 (436)
T COG3486 247 FYGLPPEARD-----ELLRK----Q--R-LLYKGISF----DTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDG 310 (436)
T ss_pred HhcCCHHHHH-----HHHhh----c--C-ccccccCH----HHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCc
Confidence 1112221111 11000 0 0 00000000 00000000111111211 133332 356666532 2
Q ss_pred -EEe-------cCCcEecCcEEEEccCCCCCCC-CCCcc--cccccC-Ccccccccc---c-cCCCCcEEEEecccCc--
Q psy2343 260 -VHF-------VDDTHIEVDTIIYATGYNRHFP-FIDKE--KLEWKL-GIPDLFIHI---A-PRNLDNIFFFGFVNAA-- 321 (396)
Q Consensus 260 -v~~-------~dG~~~~~D~VI~aTG~~~~~~-~l~~~--~~~~~~-~~~~l~~~~---~-~~~~p~l~~iG~~~~~-- 321 (396)
+.+ .+.+++++|+||+||||+...| ||+.. .+.|++ +...+.++. . .+..-.||+.|.....
T Consensus 311 ~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG 390 (436)
T COG3486 311 RYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG 390 (436)
T ss_pred eEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc
Confidence 333 1224588999999999997777 77642 244543 344332221 1 1222358887765321
Q ss_pred --CchhhHHHHHHHHHHHHHhccccCCC
Q psy2343 322 --AGLGDGLRLQGQFIRSYIQAFIRKSK 347 (396)
Q Consensus 322 --~~~~~~ae~qa~~~a~~l~~~~~lp~ 347 (396)
.+....+-.-|..+++.|.|..+-|.
T Consensus 391 ig~pdLsl~a~Raa~I~~~L~g~~~~~~ 418 (436)
T COG3486 391 IGAPDLSLGAWRAAVILNSLLGREKYPV 418 (436)
T ss_pred cCCccchHHHHHHHHHHHHHhCcCCCCC
Confidence 23455566667777888888877554
No 41
>PRK06370 mercuric reductase; Validated
Probab=99.84 E-value=1.6e-19 Score=178.34 Aligned_cols=199 Identities=15% Similarity=0.097 Sum_probs=135.5
Q ss_pred EEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEE
Q psy2343 85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 164 (396)
Q Consensus 85 ~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l 164 (396)
+|++ ++.++.||+||||||+ .|..|++||.....++++.+..+.. ..+|+|+|||+|.+|+|+|..+++.+.+|++
T Consensus 124 ~v~v-~~~~~~~d~lViATGs--~p~~p~i~G~~~~~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl 199 (463)
T PRK06370 124 TVRV-GGETLRAKRIFINTGA--RAAIPPIPGLDEVGYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTV 199 (463)
T ss_pred EEEE-CcEEEEeCEEEEcCCC--CCCCCCCCCCCcCceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 4555 3556899999999999 8999999982222345554443322 3478999999999999999999999999999
Q ss_pred EeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC
Q psy2343 165 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG 244 (396)
Q Consensus 165 ~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g 244 (396)
+.|.+.. +|.. .. .+.. .+.+.+...
T Consensus 200 i~~~~~~-l~~~----~~------------------~~~~-------------------------------~l~~~l~~~ 225 (463)
T PRK06370 200 IERGPRL-LPRE----DE------------------DVAA-------------------------------AVREILERE 225 (463)
T ss_pred EEcCCCC-Cccc----CH------------------HHHH-------------------------------HHHHHHHhC
Confidence 9987632 1110 00 0111 111112222
Q ss_pred CeEe--cCCcceEeCC--e--EEec--C-CcEecCcEEEEccCCCCCCCC--CCccccccc-CCccccccccccCCCCcE
Q psy2343 245 DILP--KDDIKNLNGN--I--VHFV--D-DTHIEVDTIIYATGYNRHFPF--IDKEKLEWK-LGIPDLFIHIAPRNLDNI 312 (396)
Q Consensus 245 ~i~~--~~~i~~i~~~--~--v~~~--d-G~~~~~D~VI~aTG~~~~~~~--l~~~~~~~~-~~~~~l~~~~~~~~~p~l 312 (396)
.|++ ...+.++++. + |.+. + +..+++|.||+|||.+|+... ++...+..+ ++.+.+.+. +.++.|+|
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-l~t~~~~I 304 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-LRTTNPGI 304 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-CcCCCCCE
Confidence 3443 3456666532 2 3332 3 346999999999999999873 444445543 344666555 57899999
Q ss_pred EEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 313 FFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 313 ~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|++||+.........|..||+.+|.++.+.
T Consensus 305 yAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 305 YAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 999999876667788999999999999875
No 42
>KOG0405|consensus
Probab=99.84 E-value=1.4e-19 Score=161.77 Aligned_cols=275 Identities=17% Similarity=0.218 Sum_probs=177.2
Q ss_pred CccccccCCCCCCCCCCceeeecCCCccccC---CCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEE
Q psy2343 4 DLGGVWNSQASCGRVYPSLHLISPKFNTQVP---DYPMPDNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQ 79 (396)
Q Consensus 4 ~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~---~~p~p~~~~~~p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~ 79 (396)
.+||++.... =+-..+-.+.+...-.+. +|-||.+...-.....+.+--..|..++ ++.++..-+..|.-|+-
T Consensus 54 ~lGGTCVn~G---CVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G 130 (478)
T KOG0405|consen 54 GLGGTCVNVG---CVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG 130 (478)
T ss_pred CcCceEEeec---cccceeEEehhhhhHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee
Confidence 6888887652 122223333333322222 3545543222224455555555555554 34444444555555543
Q ss_pred e-----CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHH
Q psy2343 80 Y-----EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDI 151 (396)
Q Consensus 80 ~-----~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~ 151 (396)
. ++...|...+++ .+++++++||||. +|.+|.||| ++. +.|..+-+.++ ..||++|||+|..|+|+
T Consensus 131 ~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg--~p~~PnIpG~E~g---idSDgff~Lee-~Pkr~vvvGaGYIavE~ 204 (478)
T KOG0405|consen 131 RARFVSPGEVEVEVNDGTKIVYTAKHILIATGG--RPIIPNIPGAELG---IDSDGFFDLEE-QPKRVVVVGAGYIAVEF 204 (478)
T ss_pred eEEEcCCCceEEEecCCeeEEEecceEEEEeCC--ccCCCCCCchhhc---cccccccchhh-cCceEEEEccceEEEEh
Confidence 2 555677776775 3789999999999 999999999 542 44544444433 46899999999999999
Q ss_pred HHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccC
Q psy2343 152 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHP 231 (396)
Q Consensus 152 a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 231 (396)
|.-++..+.+++++.|.... |+ .+. .
T Consensus 205 Agi~~gLgsethlfiR~~kv---------------------LR------~FD---------------------------~ 230 (478)
T KOG0405|consen 205 AGIFAGLGSETHLFIRQEKV---------------------LR------GFD---------------------------E 230 (478)
T ss_pred hhHHhhcCCeeEEEEecchh---------------------hc------chh---------------------------H
Confidence 99999999999999998621 00 111 1
Q ss_pred ccCchhhhcccCCCeEec--CCcceEe----C-CeEEecCCcEecCcEEEEccCCCCCCCCCC--cccccccCCcccccc
Q psy2343 232 IMNSQILYHIGHGDILPK--DDIKNLN----G-NIVHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFI 302 (396)
Q Consensus 232 ~~~~~~~~~i~~g~i~~~--~~i~~i~----~-~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~ 302 (396)
++++.+.+.+....|.++ +.++++. + ..+..+.|+...+|.++||||..|+.--|. .-+++.+.++....+
T Consensus 231 ~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD 310 (478)
T KOG0405|consen 231 MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD 310 (478)
T ss_pred HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe
Confidence 122333333333334443 2344432 2 234456677678999999999999875443 334445555555556
Q ss_pred ccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343 303 HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 303 ~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~ 341 (396)
....+++|+|+++||+.....+.|.|-+.+|.+|..+-|
T Consensus 311 eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 311 EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred ccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 777899999999999987778889999999999988877
No 43
>PLN02546 glutathione reductase
Probab=99.83 E-value=1.1e-19 Score=181.09 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=133.4
Q ss_pred EEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEE
Q psy2343 85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY 163 (396)
Q Consensus 85 ~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~ 163 (396)
+|.+ +|+++.||+||||||. .|..|++|| .. ++++.+.... ...+++|+|||+|.+|+|+|..++..+.+|+
T Consensus 207 ~V~v-~G~~~~~D~LVIATGs--~p~~P~IpG~~~---v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vt 279 (558)
T PLN02546 207 TVDV-DGKLYTARNILIAVGG--RPFIPDIPGIEH---AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDVH 279 (558)
T ss_pred EEEE-CCEEEECCEEEEeCCC--CCCCCCCCChhh---ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeEE
Confidence 4544 5667899999999999 899999998 31 2333222221 2357899999999999999999999999999
Q ss_pred EEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC
Q psy2343 164 HSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH 243 (396)
Q Consensus 164 l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 243 (396)
++.|.+.. +|.. + . .+... +.+.+..
T Consensus 280 lv~~~~~i-l~~~----d---------~---------~~~~~-------------------------------l~~~L~~ 305 (558)
T PLN02546 280 VFIRQKKV-LRGF----D---------E---------EVRDF-------------------------------VAEQMSL 305 (558)
T ss_pred EEEecccc-cccc----C---------H---------HHHHH-------------------------------HHHHHHH
Confidence 99987531 1110 0 0 00000 1111112
Q ss_pred CCeEe--cCCcceEeC---CeE--EecCCcEecCcEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEE
Q psy2343 244 GDILP--KDDIKNLNG---NIV--HFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIF 313 (396)
Q Consensus 244 g~i~~--~~~i~~i~~---~~v--~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~ 313 (396)
..|++ ...+.++++ +.+ .+.+++.+.+|.||+|+|++++..+| +...++.+ ++.+.+.++ +.++.|+||
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~-l~Ts~p~IY 384 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEY-SRTSVPSIW 384 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCC-ceeCCCCEE
Confidence 23443 234555532 223 33455556699999999999998864 44455554 355666554 468999999
Q ss_pred EEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 314 FFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 314 ~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
++||+.......+.|..||+.+|..+.|.
T Consensus 385 AaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 385 AVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred EeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99999876678889999999999999874
No 44
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.83 E-value=2.7e-19 Score=176.82 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=136.1
Q ss_pred CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
.+.+.|...+|+ ++.||+||||||+ .|..| || .+.+.++++.+.... ...+++|+|||+|.+|+|+|..+++
T Consensus 119 ~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~--pg~~~~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~ 193 (466)
T PRK07818 119 ANTLEVDLNDGGTETVTFDNAIIATGS--STRLL--PGTSLSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKN 193 (466)
T ss_pred CCEEEEEecCCCeeEEEcCEEEEeCCC--CCCCC--CCCCCCCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHH
Confidence 455666655553 5899999999999 77654 45 333445544432211 2356899999999999999999999
Q ss_pred CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343 158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237 (396)
Q Consensus 158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 237 (396)
.+.+|+++.+.+. ++|.. .. .+.. .+
T Consensus 194 ~G~~Vtlv~~~~~-~l~~~----d~------------------~~~~-------------------------------~l 219 (466)
T PRK07818 194 YGVDVTIVEFLDR-ALPNE----DA------------------EVSK-------------------------------EI 219 (466)
T ss_pred cCCeEEEEecCCC-cCCcc----CH------------------HHHH-------------------------------HH
Confidence 9999999998753 12211 00 0111 11
Q ss_pred hhcccCCCeEe--cCCcceEeCC--e--EEec--CCc--EecCcEEEEccCCCCCCCCC--Cccccccc-CCcccccccc
Q psy2343 238 LYHIGHGDILP--KDDIKNLNGN--I--VHFV--DDT--HIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHI 304 (396)
Q Consensus 238 ~~~i~~g~i~~--~~~i~~i~~~--~--v~~~--dG~--~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~~~~ 304 (396)
.+.+.+..|++ ...|+++++. . +.+. ||+ .+++|.||+|+|++|+..++ +...+..+ ++.+.+...
T Consensus 220 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~- 298 (466)
T PRK07818 220 AKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY- 298 (466)
T ss_pred HHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC-
Confidence 11222223443 3456666532 2 4444 674 58999999999999998764 44445443 345666655
Q ss_pred ccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 305 APRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 305 ~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+.++.|+||++||+.....+.+.|..||+.+|.++.|.
T Consensus 299 ~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 46899999999999866678889999999999999875
No 45
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.83 E-value=9.3e-20 Score=179.56 Aligned_cols=229 Identities=21% Similarity=0.222 Sum_probs=147.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccccee
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL 123 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~ 123 (396)
|....++.+++...++++++. +++++.|.. .+++++.. ..||+||+|||+. .|..+.++| ...| ++
T Consensus 186 ~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~~--------~v~~~~~~-~~~d~vvlAtGa~-~~~~~~i~G~~~~g-v~ 252 (457)
T PRK11749 186 FRLPKDIVDREVERLLKLGVE--IRTNTEVGR--------DITLDELR-AGYDAVFIGTGAG-LPRFLGIPGENLGG-VY 252 (457)
T ss_pred ccCCHHHHHHHHHHHHHcCCE--EEeCCEECC--------ccCHHHHH-hhCCEEEEccCCC-CCCCCCCCCccCCC-cE
Confidence 333467888888888888876 778876521 12233333 6799999999983 467777888 4333 34
Q ss_pred ecccCCC--------CCCCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343 124 HSMDYKS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194 (396)
Q Consensus 124 hs~~~~~--------~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 194 (396)
+..++.. .....+++|+|||+|.+|+|+|..+++.+. +|+++.|++...+|...
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~----------------- 315 (457)
T PRK11749 253 SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASE----------------- 315 (457)
T ss_pred EHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-----------------
Confidence 4322211 112368999999999999999999998855 89999997643333210
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEec----
Q psy2343 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV---- 263 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~---- 263 (396)
..... +.+..|++ ...+.++.++ +|.+.
T Consensus 316 ------~~~~~-----------------------------------~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~ 354 (457)
T PRK11749 316 ------EEVEH-----------------------------------AKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354 (457)
T ss_pred ------HHHHH-----------------------------------HHHCCCEEEecCCcEEEEecCCceEEEEEEEEEe
Confidence 00000 00111222 2233333221 13331
Q ss_pred ---------------CCcEecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhh
Q psy2343 264 ---------------DDTHIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGD 326 (396)
Q Consensus 264 ---------------dG~~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~ 326 (396)
+++.+++|.||+|+|++++..++.. ..+..+ .+.+.+....+.++.|+||++||+......+.
T Consensus 355 ~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~ 434 (457)
T PRK11749 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVV 434 (457)
T ss_pred cCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHH
Confidence 2235899999999999999766542 234332 35566655466889999999999986545777
Q ss_pred HHHHHHHHHHHHHhcccc
Q psy2343 327 GLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 327 ~ae~qa~~~a~~l~~~~~ 344 (396)
.|..||+.+|..+...++
T Consensus 435 ~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 435 WAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999988876654
No 46
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.82 E-value=7e-20 Score=181.75 Aligned_cols=234 Identities=17% Similarity=0.101 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE------eCCeEEEEEcc---CcEEEcCEEEEcccCCCCCCCC-CCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ------YEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYP-NYS 115 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~------~~~~~~V~~~~---g~~~~~d~vvvAtG~~~~p~~P-~~~ 115 (396)
....++.++++..+++++.. ++.+.++..|+. ..+.++|.+.+ +.++.||+||||||+ .|..| .+|
T Consensus 88 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs--~p~~p~~i~ 163 (499)
T PTZ00052 88 FNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG--RPSIPEDVP 163 (499)
T ss_pred cCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC--CCCCCCCCC
Confidence 35788999999998887543 433333332222 13334555432 346899999999999 88888 488
Q ss_pred CCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343 116 GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 195 (396)
Q Consensus 116 g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 195 (396)
|.-. ..+.+.+..... ...++|+|||+|.+|+|+|..|++.+.+|+++.+.. .++.. + .
T Consensus 164 G~~~-~~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~----d---------~---- 222 (499)
T PTZ00052 164 GAKE-YSITSDDIFSLS-KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGF----D---------R---- 222 (499)
T ss_pred Cccc-eeecHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccC----C---------H----
Confidence 8211 123333332221 235799999999999999999999999999998742 12211 0 0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC----CeEEecCCcEec
Q psy2343 196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG----NIVHFVDDTHIE 269 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~----~~v~~~dG~~~~ 269 (396)
.+.+. +.+.+....|++. ..+.++++ ..|.+.+|+.++
T Consensus 223 -----~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~ 266 (499)
T PTZ00052 223 -----QCSEK-------------------------------VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTEL 266 (499)
T ss_pred -----HHHHH-------------------------------HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence 01111 1111111233332 23344432 136678898899
Q ss_pred CcEEEEccCCCCCCCCCC--cccccccC-CccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhcc
Q psy2343 270 VDTIIYATGYNRHFPFID--KEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~--~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+|.||+|+|++|+..+|. ...++.+. +.+.+... .++.|+||++||+.. .....+.|..||+.+|..|.+.
T Consensus 267 ~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 267 FDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 999999999999998874 33445443 33344433 789999999999874 3457788999999999999874
No 47
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.82 E-value=4.7e-19 Score=175.36 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=140.1
Q ss_pred CcEEEEEEEeCCeEEEEEcc--CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343 71 NTEVINLEQYEDIWEVELSN--GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSG 148 (396)
Q Consensus 71 ~t~V~~v~~~~~~~~V~~~~--g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa 148 (396)
..++..+++.++.|+|.+.. +.+++||+||||||+ .|+.|+.. .+.+..++.++........+|+|+|||+|.+|
T Consensus 119 ~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs--~p~~~p~~-~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 195 (475)
T PRK06327 119 KGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS--EPRHLPGV-PFDNKIILDNTGALNFTEVPKKLAVIGAGVIG 195 (475)
T ss_pred EEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC--CCCCCCCC-CCCCceEECcHHHhcccccCCeEEEECCCHHH
Confidence 34555666555577887743 456899999999999 67543211 23333334333222223357999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy2343 149 CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDA 228 (396)
Q Consensus 149 ~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 228 (396)
+|+|..+++.+.+|+++.|++.. +|.. +. .+...
T Consensus 196 ~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d~------------------~~~~~----------------------- 229 (475)
T PRK06327 196 LELGSVWRRLGAEVTILEALPAF-LAAA----DE------------------QVAKE----------------------- 229 (475)
T ss_pred HHHHHHHHHcCCeEEEEeCCCcc-CCcC----CH------------------HHHHH-----------------------
Confidence 99999999999999999987632 1210 00 11111
Q ss_pred ccCccCchhhhcccCCCeEe--cCCcceEeCC--e--EEecC--C--cEecCcEEEEccCCCCCCCCCC--ccccccc-C
Q psy2343 229 AHPIMNSQILYHIGHGDILP--KDDIKNLNGN--I--VHFVD--D--THIEVDTIIYATGYNRHFPFID--KEKLEWK-L 295 (396)
Q Consensus 229 ~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~--~--v~~~d--G--~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~ 295 (396)
+.+.+....|++ ...|.+++.+ . +.+.+ | +.+++|.||+|+|++|+.++|. ...+..+ +
T Consensus 230 --------~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~ 301 (475)
T PRK06327 230 --------AAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDER 301 (475)
T ss_pred --------HHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCC
Confidence 111111223443 3456666532 2 44555 3 3589999999999999988553 2334443 3
Q ss_pred CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 296 GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 296 ~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+.+.+.+. +.++.|+||++||+.........|..||+.+|..+.+..
T Consensus 302 G~i~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 302 GFIPVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred CeEeECCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 45666554 468899999999997655677889999999999998753
No 48
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.82 E-value=4.7e-19 Score=175.14 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=136.7
Q ss_pred CCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCCCC-CCccc-ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 81 EDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYS-GYFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 81 ~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~~~-g~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
.+.+.|...++ .++.||+||||||. .|+.|++| + +.+ .++++.+.... ...+++|+|||+|.+|+|+|..+++
T Consensus 116 ~~~~~v~~~~g~~~~~~d~lVlAtG~--~p~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~ 191 (461)
T TIGR01350 116 PGTVLVTGENGEETLTAKNIIIATGS--RPRSLPGPFD-FDGEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFAS 191 (461)
T ss_pred CCEEEEecCCCcEEEEeCEEEEcCCC--CCCCCCCCCC-CCCceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 45667766554 46899999999998 88877765 3 122 23333322221 2346899999999999999999999
Q ss_pred CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343 158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237 (396)
Q Consensus 158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 237 (396)
.+.+|+++.|.+.. +|.. . . .+... +
T Consensus 192 ~g~~Vtli~~~~~~-l~~~----~-------------~-----~~~~~-------------------------------~ 217 (461)
T TIGR01350 192 LGSKVTVIEMLDRI-LPGE----D-------------A-----EVSKV-------------------------------V 217 (461)
T ss_pred cCCcEEEEEcCCCC-CCCC----C-------------H-----HHHHH-------------------------------H
Confidence 99999999987632 1210 0 0 11111 1
Q ss_pred hhcccCCCeEe--cCCcceEe--CCeE--EecCC--cEecCcEEEEccCCCCCCC--CCCcccccccC-Ccccccccccc
Q psy2343 238 LYHIGHGDILP--KDDIKNLN--GNIV--HFVDD--THIEVDTIIYATGYNRHFP--FIDKEKLEWKL-GIPDLFIHIAP 306 (396)
Q Consensus 238 ~~~i~~g~i~~--~~~i~~i~--~~~v--~~~dG--~~~~~D~VI~aTG~~~~~~--~l~~~~~~~~~-~~~~l~~~~~~ 306 (396)
.+.+.+..|++ ...+.+++ ++++ .+.+| +++++|.||+|+|.+|+.. +++...+..+. +.+.+.+. +.
T Consensus 218 ~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l~ 296 (461)
T TIGR01350 218 AKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY-MR 296 (461)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC-cc
Confidence 11122223433 34566554 3344 34567 4699999999999999987 45554455443 44655544 56
Q ss_pred CCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 307 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 307 ~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
++.|+||++||+.........|..||+.+|..+.+..
T Consensus 297 t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 297 TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 7899999999997656678899999999999998753
No 49
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.82 E-value=3.5e-19 Score=184.36 Aligned_cols=248 Identities=17% Similarity=0.170 Sum_probs=149.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 123 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~ 123 (396)
.|.-..++.++..+.+..++++ +++++.| .++ .++.....||+||||||+. .|..+.++|.-.+ ++
T Consensus 584 ~~Rlp~evL~~die~l~~~GVe--~~~gt~V-di~---------le~L~~~gYDaVILATGA~-~~~~l~IpG~~~g-V~ 649 (1019)
T PRK09853 584 QFRIPAELIQHDIEFVKAHGVK--FEFGCSP-DLT---------VEQLKNEGYDYVVVAIGAD-KNGGLKLEGGNQN-VI 649 (1019)
T ss_pred cccccHHHHHHHHHHHHHcCCE--EEeCcee-EEE---------hhhheeccCCEEEECcCCC-CCCCCCCCCccCC-ce
Confidence 3333345666666777778887 8889876 222 2233335699999999994 3555667772222 33
Q ss_pred ecccCCC------CCCCCCCeEEEEcCCCcHHHHHHHHhcC-C-CcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343 124 HSMDYKS------PDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 195 (396)
Q Consensus 124 hs~~~~~------~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 195 (396)
++.++.. .....||+|+|||||++|+|+|..+.+. + ++|+++.|++...+|...
T Consensus 650 saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~------------------ 711 (1019)
T PRK09853 650 KALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR------------------ 711 (1019)
T ss_pred ehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH------------------
Confidence 3322211 1123589999999999999999998876 3 589999998743333210
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-CcceEeCC----eEEecCCcEecC
Q psy2343 196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLNGN----IVHFVDDTHIEV 270 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~i~~i~~~----~v~~~dG~~~~~ 270 (396)
........ .|+. .............|++.... .+...+.. .+...++..+++
T Consensus 712 -----eEle~Ale--------eGVe----------~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~a 768 (1019)
T PRK09853 712 -----EEYEEALE--------DGVE----------FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEA 768 (1019)
T ss_pred -----HHHHHHHH--------cCCE----------EEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEe
Confidence 00111010 0110 00000000000122222110 00011111 122234456999
Q ss_pred cEEEEccCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCC
Q psy2343 271 DTIIYATGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSK 347 (396)
Q Consensus 271 D~VI~aTG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~ 347 (396)
|.||+|+|++++..++...++..+. +.+.+ ...+.++.|+||++||+..+...+..|..||+.+|+.|.+....+.
T Consensus 769 D~VIvAIG~~Pntelle~~GL~ld~~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~~~ 845 (1019)
T PRK09853 769 DTVITAIGEQVDTELLKANGIPLDKKGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGIRS 845 (1019)
T ss_pred CEEEECCCCcCChhHHHhcCccccCCCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888766555433 44555 4556788999999999986666778999999999999988766443
No 50
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.82 E-value=1.7e-19 Score=177.21 Aligned_cols=204 Identities=13% Similarity=0.100 Sum_probs=138.5
Q ss_pred CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCC
Q psy2343 81 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE 160 (396)
Q Consensus 81 ~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~ 160 (396)
.+.++|++.+|+++.||+||||||+ .|..|++.+...-.+..+.+..... ..+|+|+|||+|.+|+|+|..+++.+.
T Consensus 117 ~~~~~V~~~~g~~~~~d~lIiATGs--~p~~p~~~~~~~~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~ 193 (452)
T TIGR03452 117 VGPRTLRTGDGEEITGDQIVIAAGS--RPYIPPAIADSGVRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGT 193 (452)
T ss_pred ecCCEEEECCCcEEEeCEEEEEECC--CCCCCCCCCCCCCEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCC
Confidence 3556788877777999999999999 8888864431111222322222211 236899999999999999999999999
Q ss_pred cEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhc
Q psy2343 161 KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYH 240 (396)
Q Consensus 161 ~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 240 (396)
+|+++.+.+.. +|.. +. .+...+. +.
T Consensus 194 ~Vtli~~~~~l-l~~~----d~------------------~~~~~l~-------------------------------~~ 219 (452)
T TIGR03452 194 RVTIVNRSTKL-LRHL----DE------------------DISDRFT-------------------------------EI 219 (452)
T ss_pred cEEEEEccCcc-cccc----CH------------------HHHHHHH-------------------------------HH
Confidence 99999987642 1110 00 1111111 11
Q ss_pred ccCC-CeEecCCcceEe--CC--eEEecCCcEecCcEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcE
Q psy2343 241 IGHG-DILPKDDIKNLN--GN--IVHFVDDTHIEVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNI 312 (396)
Q Consensus 241 i~~g-~i~~~~~i~~i~--~~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~--~~~~~~-~~~~~l~~~~~~~~~p~l 312 (396)
+..+ ++.....|.+++ ++ .+.+.+|+.+++|.||+|+|.+|+..++.. .+++.+ ++.+.+.+++ .|+.|+|
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~I 298 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG-RTSARGV 298 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc-ccCCCCE
Confidence 1111 222234455664 22 255668888999999999999999988643 345553 3556666554 6899999
Q ss_pred EEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 313 FFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 313 ~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|++||+.....+.+.|..||+.+|+++.+.
T Consensus 299 yA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 299 WALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred EEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 999999876677788999999999999875
No 51
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.82 E-value=5.1e-19 Score=185.66 Aligned_cols=251 Identities=18% Similarity=0.162 Sum_probs=154.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccce
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEI 122 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~ 122 (396)
+|--..++.+...+.++.+|+. +++|+.|- ..+++++.....||+||||||+. .|+.+++|| ...| +
T Consensus 351 ~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~-~pr~l~IpG~dl~G-V 418 (944)
T PRK12779 351 EFRLPNQLIDDVVEKIKLLGGR--FVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAG-LPTFMNVPGEHLLG-V 418 (944)
T ss_pred CCcChHHHHHHHHHHHHhhcCe--EEEeEEec--------cEEeHHHhccccCCEEEEeCCCC-CCCcCCCCCCcCcC-c
Confidence 3434567888888888888987 77777652 14555555545799999999994 688888998 4444 3
Q ss_pred eecccCCC--------------C-CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHH
Q psy2343 123 LHSMDYKS--------------P-DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 187 (396)
Q Consensus 123 ~hs~~~~~--------------~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~ 187 (396)
+.+.+|.. . ....||+|+|||||++|+|+|..+.+.+++|+++.|++...+|..
T Consensus 419 ~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~----------- 487 (944)
T PRK12779 419 MSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPAR----------- 487 (944)
T ss_pred EEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccccc-----------
Confidence 33222211 1 134799999999999999999999999889999999863222211
Q ss_pred hhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC---CCeEe-cCCcceE---e--CC
Q psy2343 188 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH---GDILP-KDDIKNL---N--GN 258 (396)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---g~i~~-~~~i~~i---~--~~ 258 (396)
.. .+.. .. . .|+. ........+.+.+ ++++- ....... + +.
T Consensus 488 -----~~------e~~~-a~--e------eGV~----------~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr 537 (944)
T PRK12779 488 -----VE------ELHH-AL--E------EGIN----------LAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGR 537 (944)
T ss_pred -----HH------HHHH-HH--H------CCCE----------EEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCc
Confidence 00 0100 00 0 0110 0000000111111 11210 0000000 0 11
Q ss_pred eEEecCCc--EecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHH
Q psy2343 259 IVHFVDDT--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQF 334 (396)
Q Consensus 259 ~v~~~dG~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~ 334 (396)
.....+|+ .+++|.||+|+|+.++..+... ..++.+ .+.+.+.+..+.|+.|+||++||+..+...+..|..+|+.
T Consensus 538 ~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~ 617 (944)
T PRK12779 538 RSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQA 617 (944)
T ss_pred eeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHH
Confidence 11112343 4899999999999988543322 234433 3455666556788999999999998776678899999999
Q ss_pred HHHHHhccccCCC
Q psy2343 335 IRSYIQAFIRKSK 347 (396)
Q Consensus 335 ~a~~l~~~~~lp~ 347 (396)
+|..|...+.+..
T Consensus 618 AA~~I~~~L~~~~ 630 (944)
T PRK12779 618 AAKEIVGEIPFTP 630 (944)
T ss_pred HHHHHHHHhcccc
Confidence 9999998877654
No 52
>PTZ00058 glutathione reductase; Provisional
Probab=99.82 E-value=5.6e-19 Score=176.10 Aligned_cols=192 Identities=15% Similarity=0.206 Sum_probs=134.3
Q ss_pred ccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 89 SNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 89 ~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
++|++++||+||||||+ .|..|++|| .+ ++++.++..... +++|+|||+|.+|+|+|..+++.+.+|+++.|
T Consensus 196 ~~g~~i~ad~lVIATGS--~P~~P~IpG~~~---v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~ 268 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGN--KPIFPDVKGKEF---TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFAR 268 (561)
T ss_pred CCCcEEECCEEEEecCC--CCCCCCCCCcee---EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe
Confidence 45667999999999998 899999998 32 455555443322 79999999999999999999999999999998
Q ss_pred cCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE
Q psy2343 168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL 247 (396)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~ 247 (396)
.+.. +|.. . . .+.+ .+.+.+.+..|+
T Consensus 269 ~~~i-l~~~----d---------~---------~i~~-------------------------------~l~~~L~~~GV~ 294 (561)
T PTZ00058 269 GNRL-LRKF----D---------E---------TIIN-------------------------------ELENDMKKNNIN 294 (561)
T ss_pred cccc-cccC----C---------H---------HHHH-------------------------------HHHHHHHHCCCE
Confidence 7632 2211 0 0 1111 111122222333
Q ss_pred e--cCCcceEeCC---e--EEecCC-cEecCcEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEec
Q psy2343 248 P--KDDIKNLNGN---I--VHFVDD-THIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGF 317 (396)
Q Consensus 248 ~--~~~i~~i~~~---~--v~~~dG-~~~~~D~VI~aTG~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~p~l~~iG~ 317 (396)
+ ...+.++++. . +.+.++ +.+++|.||+|+|++|+..+|..+.+ ..+++.+.+.+. +.++.|+||++||
T Consensus 295 i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~-lqTs~p~IYA~GD 373 (561)
T PTZ00058 295 IITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDN-QRTSVKHIYAVGD 373 (561)
T ss_pred EEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcC-CccCCCCEEEeEe
Confidence 3 3345566532 2 334454 46999999999999999888754322 234455666554 5789999999999
Q ss_pred ccC----------------------------------cCchhhHHHHHHHHHHHHHhcc
Q psy2343 318 VNA----------------------------------AAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 318 ~~~----------------------------------~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+.. .....+.|..||+.+|.++.|.
T Consensus 374 v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 374 CCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 976 3456778999999999999875
No 53
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=1.4e-18 Score=170.74 Aligned_cols=202 Identities=15% Similarity=0.141 Sum_probs=141.2
Q ss_pred CCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 81 EDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 81 ~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
.+.+.|.+.++. ++.||+||||||+ .|..|++|| .+.+ ++++.++... ...+++|+|||+|.+|+|+|..+++
T Consensus 104 ~~~~~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~~~-v~~~~~~~~~-~~~~~~v~ViGgG~~g~E~A~~l~~ 179 (441)
T PRK08010 104 NHSLRVHRPEGNLEIHGEKIFINTGA--QTVVPPIPGITTTPG-VYDSTGLLNL-KELPGHLGILGGGYIGVEFASMFAN 179 (441)
T ss_pred CCEEEEEeCCCeEEEEeCEEEEcCCC--cCCCCCCCCccCCCC-EEChhHhhcc-cccCCeEEEECCCHHHHHHHHHHHH
Confidence 466778777765 5899999999999 899999999 3444 5555444433 2356899999999999999999999
Q ss_pred CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343 158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237 (396)
Q Consensus 158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 237 (396)
.+.+|+++.|.+. ++|... . .+... +
T Consensus 180 ~g~~Vtli~~~~~-~l~~~~----~------------------~~~~~-------------------------------l 205 (441)
T PRK08010 180 FGSKVTILEAASL-FLPRED----R------------------DIADN-------------------------------I 205 (441)
T ss_pred CCCeEEEEecCCC-CCCCcC----H------------------HHHHH-------------------------------H
Confidence 9999999998753 222210 0 11111 1
Q ss_pred hhcccCCCeEe--cCCcceEeC--CeEEe--cCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCC
Q psy2343 238 LYHIGHGDILP--KDDIKNLNG--NIVHF--VDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRN 308 (396)
Q Consensus 238 ~~~i~~g~i~~--~~~i~~i~~--~~v~~--~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~ 308 (396)
.+.+.+..|++ ...|.+++. +.+.+ ++| .+++|.||+|+|.+|+..++. ...+.++ ++.+.+.++ +.++
T Consensus 206 ~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts 283 (441)
T PRK08010 206 ATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKY-LHTT 283 (441)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCC-cccC
Confidence 11222223443 345666653 33433 344 488999999999999987643 3345554 355666655 4788
Q ss_pred CCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 309 LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 309 ~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.|+||++||+.......+.+..||+.++..+.|.
T Consensus 284 ~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 284 ADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred CCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 9999999999876677788999999999999874
No 54
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.81 E-value=6.2e-19 Score=180.03 Aligned_cols=246 Identities=18% Similarity=0.182 Sum_probs=145.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccccee
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL 123 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~ 123 (396)
|...+++.++....+..+|+. +++++.|. + .++.++.. ..||+||+|||+. .+..+.+|| ...| ++
T Consensus 239 ~~~~~~~~~~~~~~l~~~Gv~--i~~~~~v~-~-------dv~~~~~~-~~~DaVilAtGa~-~~~~~~ipG~~~~g-v~ 305 (652)
T PRK12814 239 FRLPESVIDADIAPLRAMGAE--FRFNTVFG-R-------DITLEELQ-KEFDAVLLAVGAQ-KASKMGIPGEELPG-VI 305 (652)
T ss_pred CCCCHHHHHHHHHHHHHcCCE--EEeCCccc-C-------ccCHHHHH-hhcCEEEEEcCCC-CCCCCCCCCcCcCC-cE
Confidence 333456667777777888876 78887541 1 12222222 3599999999983 244567888 4444 23
Q ss_pred ecccCC-----CCCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343 124 HSMDYK-----SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197 (396)
Q Consensus 124 hs~~~~-----~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 197 (396)
+..++. ......||+|+|||+|++|+|+|..+.+.+ ++|+++.|++...+|... .
T Consensus 306 ~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~-----~-------------- 366 (652)
T PRK12814 306 SGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANR-----A-------------- 366 (652)
T ss_pred eHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-----H--------------
Confidence 322221 123457999999999999999999998875 579999998643333210 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc-CCCeEecC-Ccc--eEeCC---eEEecCCc--Ee
Q psy2343 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILPKD-DIK--NLNGN---IVHFVDDT--HI 268 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~g~i~~~~-~i~--~i~~~---~v~~~dG~--~~ 268 (396)
.+.+. .+ .|+. ...+....+... .+++.+.. .+. ..+.. .....+|+ .+
T Consensus 367 ---ei~~a-~~--------eGV~----------i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i 424 (652)
T PRK12814 367 ---EIEEA-LA--------EGVS----------LRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTL 424 (652)
T ss_pred ---HHHHH-HH--------cCCc----------EEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEE
Confidence 11110 00 0110 000000000000 11111100 000 00000 01112343 48
Q ss_pred cCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343 269 EVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 269 ~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
++|.||+|+|+.++..+++...+..+ ++.+.+....+.++.|+||++||+......+..|..||+.+|..|...+.
T Consensus 425 ~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 425 QADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred ECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888876656554 35566666677899999999999986666677888999998887765543
No 55
>KOG1336|consensus
Probab=99.81 E-value=6e-19 Score=165.05 Aligned_cols=228 Identities=18% Similarity=0.221 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 128 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~ 128 (396)
+.+......+.+..+++ .+++|.|++++..++ +|...+|+++.|++++||||+ .|+.|++||... +.+ +.+
T Consensus 127 ~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs--~~~~l~~pG~~~-~nv--~~i 197 (478)
T KOG1336|consen 127 EGLAKRTPEFYKEKGIE--LILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS--SAKTLDIPGVEL-KNV--FYL 197 (478)
T ss_pred ccccccChhhHhhcCce--EEEcceeEEeecccc--EEEeCCCceeecceEEEeecC--ccccCCCCCccc-cce--eee
Confidence 44444455566777887 889999999997655 788889999999999999999 899999999332 222 223
Q ss_pred CCCCC--------CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 129 KSPDQ--------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 129 ~~~~~--------~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
++.++ -.++.|+|||+|..|+|+|.+|...+.+||++.+.+ |.+|+. +.
T Consensus 198 reieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~l----------------f~------ 254 (478)
T KOG1336|consen 198 REIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRL----------------FG------ 254 (478)
T ss_pred ccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhh----------------hh------
Confidence 33321 247789999999999999999999999999999875 333321 00
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC------eEEecCCcEecCcE
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN------IVHFVDDTHIEVDT 272 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~------~v~~~dG~~~~~D~ 272 (396)
+.+...+...+.+..|++ .+.+.+++++ .|.+.||+.+++|.
T Consensus 255 ------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adl 304 (478)
T KOG1336|consen 255 ------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADL 304 (478)
T ss_pred ------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCe
Confidence 011112222333334443 4556666543 37889999999999
Q ss_pred EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHH
Q psy2343 273 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYI 339 (396)
Q Consensus 273 VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l 339 (396)
||+++|.+|+.+|+.......+.|.+.++.. |.+++|++|++||+... ...+..+..+++.+...+
T Consensus 305 vv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~-f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 305 VVVGIGIKPNTSFLEKGILLDSKGGIKVDEF-FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI 380 (478)
T ss_pred EEEeeccccccccccccceecccCCEeehhc-eeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence 9999999999999986322334567777654 58889999999998752 123445566666544333
No 56
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.81 E-value=5.1e-19 Score=174.79 Aligned_cols=202 Identities=18% Similarity=0.106 Sum_probs=132.1
Q ss_pred CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343 81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158 (396)
Q Consensus 81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~ 158 (396)
.+...|+..++ .++.||+||||||+ .|..|++||.-. ..+++.+..... ...++|+|||+|.+|+|+|..+++.
T Consensus 127 ~~~v~v~~~~g~~~~~~~d~lVIATGs--~p~~p~ipG~~~-~~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~ 202 (484)
T TIGR01438 127 KHRIKATNKKGKEKIYSAERFLIATGE--RPRYPGIPGAKE-LCITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGI 202 (484)
T ss_pred CCEEEEeccCCCceEEEeCEEEEecCC--CCCCCCCCCccc-eeecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHh
Confidence 34445543343 35899999999999 899999998211 123333333222 2356899999999999999999999
Q ss_pred CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343 159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL 238 (396)
Q Consensus 159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 238 (396)
+.+|+++.|.. .+|.. +. .+.. .+.
T Consensus 203 G~~Vtli~~~~--~l~~~----d~------------------~~~~-------------------------------~l~ 227 (484)
T TIGR01438 203 GLDVTVMVRSI--LLRGF----DQ------------------DCAN-------------------------------KVG 227 (484)
T ss_pred CCcEEEEEecc--ccccc----CH------------------HHHH-------------------------------HHH
Confidence 99999998742 22211 00 1111 111
Q ss_pred hcccCCCeEec--CCcceEeC--C--eEEecCCc---EecCcEEEEccCCCCCCCCCC--cccccccC--Cccccccccc
Q psy2343 239 YHIGHGDILPK--DDIKNLNG--N--IVHFVDDT---HIEVDTIIYATGYNRHFPFID--KEKLEWKL--GIPDLFIHIA 305 (396)
Q Consensus 239 ~~i~~g~i~~~--~~i~~i~~--~--~v~~~dG~---~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~--~~~~l~~~~~ 305 (396)
+.+....|++. ..+.++++ + .|.+++|+ ++++|.||+|+|++|+..+|. ...+++++ +.+.+.+ .+
T Consensus 228 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~ 306 (484)
T TIGR01438 228 EHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EE 306 (484)
T ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-Cc
Confidence 12222234432 23344432 2 35666663 689999999999999988754 44455432 4455544 45
Q ss_pred cCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhcc
Q psy2343 306 PRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 306 ~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.++.|+||++||+.. .....+.|..||+.+|+.|.+.
T Consensus 307 ~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 307 QTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred ccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 789999999999875 3456778999999999999864
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=9.8e-19 Score=181.92 Aligned_cols=240 Identities=18% Similarity=0.184 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeeccc
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 127 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~ 127 (396)
+++.+...+.++++++. +++++.|.. .|++++.....||+||||||+. .|+.|++|| ...| ++++.+
T Consensus 481 ~~~~~~~~~~l~~~gv~--~~~~~~v~~--------~v~~~~l~~~~ydavvlAtGa~-~~~~l~ipG~~~~g-V~~~~~ 548 (752)
T PRK12778 481 KKIVDVEIENLKKLGVK--FETDVIVGK--------TITIEELEEEGFKGIFIASGAG-LPNFMNIPGENSNG-VMSSNE 548 (752)
T ss_pred HHHHHHHHHHHHHCCCE--EECCCEECC--------cCCHHHHhhcCCCEEEEeCCCC-CCCCCCCCCCCCCC-cEEHHH
Confidence 35666666777778876 777876511 2334443345699999999983 588888898 3333 344332
Q ss_pred CC-------------CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCceeecCCCCCCChhHHHHhhCccc
Q psy2343 128 YK-------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 193 (396)
Q Consensus 128 ~~-------------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 193 (396)
+. ......||+|+|||+|++|+|+|..+.+.+.+ |+++.|++...+|.. .
T Consensus 549 ~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~----------------~ 612 (752)
T PRK12778 549 YLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPAR----------------L 612 (752)
T ss_pred HHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC----------------H
Confidence 21 11134689999999999999999999998765 999999864322221 0
Q ss_pred cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecCCcceE-------eCC--eEEe
Q psy2343 194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKDDIKNL-------NGN--IVHF 262 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~~i~~i-------~~~--~v~~ 262 (396)
.....+. ..|+. ........+.+ ..|+++-. .+..+ ++. .+..
T Consensus 613 -------~e~~~~~--------~~GV~----------i~~~~~~~~i~~~~~g~v~~v-~~~~~~~~~~~~~G~~~~~~~ 666 (752)
T PRK12778 613 -------EEVKHAK--------EEGIE----------FLTLHNPIEYLADEKGWVKQV-VLQKMELGEPDASGRRRPVAI 666 (752)
T ss_pred -------HHHHHHH--------HcCCE----------EEecCcceEEEECCCCEEEEE-EEEEEEecCcCCCCCCCceec
Confidence 0000000 00110 00000000111 01111100 00000 000 0111
Q ss_pred cCC-cEecCcEEEEccCCCCCCCCCCcc-ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHH
Q psy2343 263 VDD-THIEVDTIIYATGYNRHFPFIDKE-KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 339 (396)
Q Consensus 263 ~dG-~~~~~D~VI~aTG~~~~~~~l~~~-~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l 339 (396)
++. ..+++|.||+|+|++++..++... .+..+ .+.+.+.... .|+.|+||++||+..+...+..|..||+.+|..|
T Consensus 667 ~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I 745 (752)
T PRK12778 667 PGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAI 745 (752)
T ss_pred CCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHH
Confidence 111 248999999999999998766542 34443 3455555444 7899999999999876667788999999999988
Q ss_pred hccc
Q psy2343 340 QAFI 343 (396)
Q Consensus 340 ~~~~ 343 (396)
...+
T Consensus 746 ~~~L 749 (752)
T PRK12778 746 DEYL 749 (752)
T ss_pred HHHh
Confidence 7654
No 58
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.80 E-value=1.3e-18 Score=171.58 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=131.0
Q ss_pred cEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC---CCcEEEEec
Q psy2343 92 KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTR 167 (396)
Q Consensus 92 ~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r 167 (396)
+++.||+||||||+ .|..|++|| .. ++.+.+.... .-.+++|+|||+|.+|+|+|..++.. +.+|+++.|
T Consensus 148 ~~~~~d~lIIATGs--~p~~p~i~G~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~ 221 (486)
T TIGR01423 148 ERLQAEHILLATGS--WPQMLGIPGIEH---CISSNEAFYL-DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR 221 (486)
T ss_pred eEEECCEEEEecCC--CCCCCCCCChhh---eechhhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec
Confidence 46899999999999 899999998 31 2233222221 12468999999999999999876654 789999998
Q ss_pred cCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE
Q psy2343 168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL 247 (396)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~ 247 (396)
.+.. +|.. + . .+... +.+.+....|+
T Consensus 222 ~~~i-l~~~----d---------~---------~~~~~-------------------------------l~~~L~~~GI~ 247 (486)
T TIGR01423 222 NNMI-LRGF----D---------S---------TLRKE-------------------------------LTKQLRANGIN 247 (486)
T ss_pred CCcc-cccc----C---------H---------HHHHH-------------------------------HHHHHHHcCCE
Confidence 7632 1211 0 0 11111 11112222333
Q ss_pred e--cCCcceEeC-----CeEEecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEec
Q psy2343 248 P--KDDIKNLNG-----NIVHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGF 317 (396)
Q Consensus 248 ~--~~~i~~i~~-----~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~ 317 (396)
+ ...+++++. ..|.+.+|+.+++|.||+|||.+|+..++. ...++.+ ++.+.+.+.+ .++.|+||++||
T Consensus 248 i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GD 326 (486)
T TIGR01423 248 IMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFS-RTNVPNIYAIGD 326 (486)
T ss_pred EEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCC-cCCCCCEEEeee
Confidence 3 334566642 246677888899999999999999988653 3444443 3456666554 689999999999
Q ss_pred ccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 318 VNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 318 ~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+.......+.|..||+.+|.++.|.
T Consensus 327 v~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 327 VTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred cCCCcccHHHHHHHHHHHHHHHhCC
Confidence 9876678889999999999999874
No 59
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.80 E-value=3e-18 Score=169.27 Aligned_cols=203 Identities=18% Similarity=0.163 Sum_probs=132.1
Q ss_pred CCeEEEEEccC--cEEEcCEEEEcccCCCCCC-CCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVAR-YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~-~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
.+...|+..+| .++.||+||||||+ .|. .|.+++.- ..++.+.+..... -.+++|+|||+|.+|+|+|..+++
T Consensus 120 ~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~-~~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~ 195 (471)
T PRK06467 120 GNTLEVTGEDGKTTVIEFDNAIIAAGS--RPIQLPFIPHDD-PRIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHR 195 (471)
T ss_pred CCEEEEecCCCceEEEEcCEEEEeCCC--CCCCCCCCCCCC-CcEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHH
Confidence 45556666566 35899999999999 776 45555421 1244444333322 235899999999999999999999
Q ss_pred CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343 158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237 (396)
Q Consensus 158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 237 (396)
.+.+|+++.+.+.. +|.. . . .+... +
T Consensus 196 ~G~~Vtlv~~~~~i-l~~~----d---------~---------~~~~~-------------------------------~ 221 (471)
T PRK06467 196 LGSEVDVVEMFDQV-IPAA----D---------K---------DIVKV-------------------------------F 221 (471)
T ss_pred cCCCEEEEecCCCC-CCcC----C---------H---------HHHHH-------------------------------H
Confidence 99999999987632 2211 0 0 11111 1
Q ss_pred hhcccCC-CeEecCCcceEe--CCe--EEecCC----cEecCcEEEEccCCCCCCCCCC--cccccccC-Cccccccccc
Q psy2343 238 LYHIGHG-DILPKDDIKNLN--GNI--VHFVDD----THIEVDTIIYATGYNRHFPFID--KEKLEWKL-GIPDLFIHIA 305 (396)
Q Consensus 238 ~~~i~~g-~i~~~~~i~~i~--~~~--v~~~dG----~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~-~~~~l~~~~~ 305 (396)
.+.+... ++.....+++++ ++. +.+.++ +++++|.||+|+|++|+..++. ...++++. +.+.+... +
T Consensus 222 ~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~-~ 300 (471)
T PRK06467 222 TKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ-C 300 (471)
T ss_pred HHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC-c
Confidence 1111111 222233455554 223 344443 3589999999999999988653 33445543 44555544 5
Q ss_pred cCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 306 PRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 306 ~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus 301 ~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 301 RTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred ccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 7899999999999755567789999999999999874
No 60
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.80 E-value=3.6e-18 Score=169.06 Aligned_cols=222 Identities=15% Similarity=0.095 Sum_probs=143.0
Q ss_pred HHHcCCCCceEeCcEEEEEEEe-----CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccc-eeecccCCC
Q psy2343 59 AKKFDVYNHSIFNTEVINLEQY-----EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGE-ILHSMDYKS 130 (396)
Q Consensus 59 ~~~~~l~~~i~~~t~V~~v~~~-----~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~-~~hs~~~~~ 130 (396)
+++.++. +.. .++..++.. ++.++|.+.+| .++.||+||||||+ .|+.|+.. .+.+. ++++.+...
T Consensus 102 ~~~~gv~--~~~-g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs--~p~~~p~~-~~~~~~~~~~~~~~~ 175 (472)
T PRK05976 102 LKKGKID--VFH-GIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS--RPVELPGL-PFDGEYVISSDEALS 175 (472)
T ss_pred HHhCCCE--EEE-EEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC--CCCCCCCC-CCCCceEEcchHhhC
Confidence 3444554 333 355555543 33788887776 46899999999999 77643211 22332 445444433
Q ss_pred CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHh
Q psy2343 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLA 210 (396)
Q Consensus 131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (396)
.. ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+. ++|.. + . .+...
T Consensus 176 ~~-~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~-il~~~----~---------~---------~~~~~----- 226 (472)
T PRK05976 176 LE-TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR-ILPTE----D---------A---------ELSKE----- 226 (472)
T ss_pred cc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-cCCcC----C---------H---------HHHHH-----
Confidence 22 2468999999999999999999999999999998763 22211 0 0 11111
Q ss_pred cCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe---CCeE---EecCCc--EecCcEEEEccCCC
Q psy2343 211 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN---GNIV---HFVDDT--HIEVDTIIYATGYN 280 (396)
Q Consensus 211 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~---~~~v---~~~dG~--~~~~D~VI~aTG~~ 280 (396)
+.+.+....|++ ...+.+++ .+.+ .+.+|+ .+++|.||+|||.+
T Consensus 227 --------------------------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 227 --------------------------VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred --------------------------HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 111122223443 33456664 3332 235674 58999999999999
Q ss_pred CCCCCCCc--ccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 281 RHFPFIDK--EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 281 ~~~~~l~~--~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|+.+.+.. ..+..+++.+.+.+. +.++.|++|++||+.........|..||+.+|..+.|.
T Consensus 281 p~~~~l~l~~~~~~~~~g~i~Vd~~-l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 281 PNTEGIGLENTDIDVEGGFIQIDDF-CQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred cCCCCCCchhcCceecCCEEEECCC-cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99876532 223334455665554 46789999999999765567788999999999999875
No 61
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.79 E-value=4.7e-18 Score=167.52 Aligned_cols=204 Identities=15% Similarity=0.138 Sum_probs=135.7
Q ss_pred CCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCC
Q psy2343 81 EDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159 (396)
Q Consensus 81 ~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~ 159 (396)
++...|+.+++. ++.||+||||||+ .|..|++++.....++++.+.... .-..++|+|||+|.+|+|+|..+.+.+
T Consensus 117 ~~~v~v~~~~~~~~~~~d~lviATGs--~p~~~p~~~~~~~~v~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g 193 (458)
T PRK06912 117 DHRVRVEYGDKEEVVDAEQFIIAAGS--EPTELPFAPFDGKWIINSKHAMSL-PSIPSSLLIVGGGVIGCEFASIYSRLG 193 (458)
T ss_pred CCEEEEeeCCCcEEEECCEEEEeCCC--CCCCCCCCCCCCCeEEcchHHhCc-cccCCcEEEECCCHHHHHHHHHHHHcC
Confidence 555667665553 6899999999999 787776665211124554333322 223689999999999999999999999
Q ss_pred CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhh
Q psy2343 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239 (396)
Q Consensus 160 ~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 239 (396)
.+|+++.|.+.. +|.. .. .+... +.+
T Consensus 194 ~~Vtli~~~~~l-l~~~----d~------------------e~~~~-------------------------------l~~ 219 (458)
T PRK06912 194 TKVTIVEMAPQL-LPGE----DE------------------DIAHI-------------------------------LRE 219 (458)
T ss_pred CeEEEEecCCCc-Cccc----cH------------------HHHHH-------------------------------HHH
Confidence 999999987632 1110 00 11111 111
Q ss_pred cccCCCeEe--cCCcceEeC--CeEEec-CCc--EecCcEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCC
Q psy2343 240 HIGHGDILP--KDDIKNLNG--NIVHFV-DDT--HIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLD 310 (396)
Q Consensus 240 ~i~~g~i~~--~~~i~~i~~--~~v~~~-dG~--~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~p 310 (396)
.+....|++ ...|.+++. ..+.+. +|+ ++++|.||+|||.+|+..++. ...+..+++++.+.+. +.++.|
T Consensus 220 ~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~-~~ts~~ 298 (458)
T PRK06912 220 KLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEH-MQTNVP 298 (458)
T ss_pred HHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCC-eecCCC
Confidence 111223443 345666653 234443 443 589999999999999987653 3344444455666555 467899
Q ss_pred cEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 311 NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 311 ~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
++|++||+.......+.|..||+.+|..+.|.
T Consensus 299 ~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 299 HIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99999999865567789999999999999874
No 62
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.79 E-value=3.8e-18 Score=172.42 Aligned_cols=239 Identities=18% Similarity=0.151 Sum_probs=148.5
Q ss_pred ChHHHHHHHHHHHHHcC--CCC-----ceEeCcEEEEEEEeC----CeEEEEE-ccCcEEEcCEEEEcccCCCCCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFD--VYN-----HSIFNTEVINLEQYE----DIWEVEL-SNGKKKKYDFIAVCNGAQRVARYPNY 114 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~--l~~-----~i~~~t~V~~v~~~~----~~~~V~~-~~g~~~~~d~vvvAtG~~~~p~~P~~ 114 (396)
..+.+.+|.+...+.+. +.. .+..+++++.+.... +..+|.. .+++++.||+||||||+ .|.+|++
T Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS--~P~~P~~ 291 (659)
T PTZ00153 214 DITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGS--TPNIPDN 291 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCC--CCCCCCC
Confidence 45677777777766532 110 011222334444321 2223443 35667899999999999 8888876
Q ss_pred CCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343 115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194 (396)
Q Consensus 115 ~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 194 (396)
++.....++++.+.... ...+++|+|||+|.+|+|+|..++..+++|+++.+.+.. +|.. ..
T Consensus 292 ~~~~~~~V~ts~d~~~l-~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l-l~~~----d~------------ 353 (659)
T PTZ00153 292 IEVDQKSVFTSDTAVKL-EGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL-LPLL----DA------------ 353 (659)
T ss_pred CCCCCCcEEehHHhhhh-hhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc-cccC----CH------------
Confidence 65222235555433322 224789999999999999999999999999999997642 1210 00
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEE--ecC--
Q psy2343 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVH--FVD-- 264 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~--~~d-- 264 (396)
.+.+.+.+. .+....|++ ...|.++++. .|. +.+
T Consensus 354 ------eis~~l~~~------------------------------ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~ 397 (659)
T PTZ00153 354 ------DVAKYFERV------------------------------FLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ 397 (659)
T ss_pred ------HHHHHHHHH------------------------------HhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc
Confidence 111111100 011112333 3345555432 133 221
Q ss_pred -----C--------cEecCcEEEEccCCCCCCCCCC--cccccccCCccccccccccCC------CCcEEEEecccCcCc
Q psy2343 265 -----D--------THIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRN------LDNIFFFGFVNAAAG 323 (396)
Q Consensus 265 -----G--------~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~------~p~l~~iG~~~~~~~ 323 (396)
+ +++++|.||+|||.+|+..+|. ...+..+++.+.+.+++ .++ +|+||++||+.....
T Consensus 398 ~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~l-qTs~~~~~~v~~IYAiGDv~g~~~ 476 (659)
T PTZ00153 398 TGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHL-RVLREDQEVYDNIFCIGDANGKQM 476 (659)
T ss_pred cccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCC-CcCCCCCCCCCCEEEEEecCCCcc
Confidence 1 2689999999999999988763 33444555556666554 443 699999999986666
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q psy2343 324 LGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 324 ~~~~ae~qa~~~a~~l~~~ 342 (396)
+.+.|..||+.+|++|.|.
T Consensus 477 La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 477 LAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 7889999999999999875
No 63
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.79 E-value=6e-18 Score=166.97 Aligned_cols=203 Identities=14% Similarity=0.067 Sum_probs=133.9
Q ss_pred CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-Cccc-ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHh
Q psy2343 81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 156 (396)
Q Consensus 81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~ 156 (396)
+.++.|.+.+|+ ++.||+||||||+ .|. .+|| .+.+ .++++.+.... .-.+|+|+|||+|.+|+|+|..++
T Consensus 120 ~~~v~v~~~~g~~~~~~~d~lVIATGs--~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~ 194 (466)
T PRK06115 120 VGKVVVKAEDGSETQLEAKDIVIATGS--EPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWR 194 (466)
T ss_pred CCEEEEEcCCCceEEEEeCEEEEeCCC--CCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHH
Confidence 455666666664 5899999999999 664 3555 3333 24554433332 234799999999999999999999
Q ss_pred cCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch
Q psy2343 157 HHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ 236 (396)
Q Consensus 157 ~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (396)
+.+.+|+++.+.+. ++|.. .. .+...
T Consensus 195 ~~G~~Vtlie~~~~-il~~~----d~------------------~~~~~------------------------------- 220 (466)
T PRK06115 195 RLGAQVTVVEYLDR-ICPGT----DT------------------ETAKT------------------------------- 220 (466)
T ss_pred HcCCeEEEEeCCCC-CCCCC----CH------------------HHHHH-------------------------------
Confidence 99999999998753 12211 10 01111
Q ss_pred hhhcccCCCeEe--cCCcceEeC--CeE--Eec---CC--cEecCcEEEEccCCCCCCCCCC--cccccccCCccccccc
Q psy2343 237 ILYHIGHGDILP--KDDIKNLNG--NIV--HFV---DD--THIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIH 303 (396)
Q Consensus 237 ~~~~i~~g~i~~--~~~i~~i~~--~~v--~~~---dG--~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~ 303 (396)
+.+.+....|++ ...++++++ +++ .+. +| +.+++|.||+|+|++|+...|. ...+..+.+++.+..
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~- 299 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLAND- 299 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECC-
Confidence 111111123333 345666653 233 332 23 4689999999999999987653 333444444454444
Q ss_pred cccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 304 IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 304 ~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.+.++.|+||++||+.....+.+.|..||+.+|.++.+..
T Consensus 300 ~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 300 HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred CeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 4578999999999998766778899999999999998753
No 64
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.78 E-value=9.7e-18 Score=164.57 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=130.3
Q ss_pred cEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 92 KKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 92 ~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+||||||+ .|+.|++|| ... .++++.++.... ..+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+
T Consensus 115 ~~~~~d~vViATGs--~~~~p~i~G~~~~~-~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 115 IELTAETIVINTGA--VSNVLPIPGLADSK-HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred EEEEcCEEEEeCCC--CCCCCCCCCcCCCC-cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 35899999999999 888899998 232 345554443332 247899999999999999999999999999999976
Q ss_pred ceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-
Q psy2343 170 YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP- 248 (396)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~- 248 (396)
.. +|.. .. .+... +.+.+....|++
T Consensus 191 ~~-l~~~----~~------------------~~~~~-------------------------------~~~~l~~~GI~i~ 216 (438)
T PRK07251 191 TI-LPRE----EP------------------SVAAL-------------------------------AKQYMEEDGITFL 216 (438)
T ss_pred cc-CCCC----CH------------------HHHHH-------------------------------HHHHHHHcCCEEE
Confidence 32 2211 00 01000 111111123333
Q ss_pred -cCCcceEeC--CeEE-ecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEecccCc
Q psy2343 249 -KDDIKNLNG--NIVH-FVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA 321 (396)
Q Consensus 249 -~~~i~~i~~--~~v~-~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~ 321 (396)
...+.+++. ..+. ..+|+++++|.||+|||.+|+.+.+. ...+..+ ++.+.+.+. +.++.|+||++||+...
T Consensus 217 ~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~ 295 (438)
T PRK07251 217 LNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGG 295 (438)
T ss_pred cCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCC
Confidence 234566643 2333 34677899999999999999987654 2233333 345666554 57889999999999865
Q ss_pred CchhhHHHHHHHHHHHHHhcc
Q psy2343 322 AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 322 ~~~~~~ae~qa~~~a~~l~~~ 342 (396)
....+.+..|++.++..+.+.
T Consensus 296 ~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 296 PQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred cccHhHHHHHHHHHHHHHcCC
Confidence 566778888999998888764
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.75 E-value=2.4e-17 Score=171.70 Aligned_cols=242 Identities=18% Similarity=0.165 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 128 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~ 128 (396)
.++.++..+.+..+|+. +++++.. .++.++.....||+||||||+. .+..+.++|.-. .++.+.++
T Consensus 587 ~e~l~~~ie~l~~~GVe--~~~g~~~----------d~~ve~l~~~gYDaVIIATGA~-~~~~l~I~G~~~-~v~~avef 652 (1012)
T TIGR03315 587 AESIQKDIELVKFHGVE--FKYGCSP----------DLTVAELKNQGYKYVILAIGAW-KHGPLRLEGGGE-RVLKSLEF 652 (1012)
T ss_pred HHHHHHHHHHHHhcCcE--EEEeccc----------ceEhhhhhcccccEEEECCCCC-CCCCCCcCCCCc-ceeeHHHH
Confidence 45566666666677876 6666421 0122223335699999999994 344556776211 22322222
Q ss_pred C----C--CCCCCCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 129 K----S--PDQIRNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 129 ~----~--~~~~~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
. . .....||+|+|||+|++|+|+|..+.+. +++|+++.|+....+|... +
T Consensus 653 L~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~-----e----------------- 710 (1012)
T TIGR03315 653 LRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASR-----E----------------- 710 (1012)
T ss_pred HHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCH-----H-----------------
Confidence 1 1 1224699999999999999999998875 4689999998643333210 0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-CcceEe--CCeEEecCCc--EecCcEEEE
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLN--GNIVHFVDDT--HIEVDTIIY 275 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~i~~i~--~~~v~~~dG~--~~~~D~VI~ 275 (396)
.+.. ..+ .|+. ...... ...+..++++... .+...+ +......+|+ .+++|.||+
T Consensus 711 El~~-ale--------eGVe----------~~~~~~-p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIv 770 (1012)
T TIGR03315 711 ELEE-ALE--------DGVD----------FKELLS-PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIA 770 (1012)
T ss_pred HHHH-HHH--------cCCE----------EEeCCc-eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEE
Confidence 1111 010 0110 000000 0001122222110 000001 1112233454 489999999
Q ss_pred ccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCC
Q psy2343 276 ATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKS 346 (396)
Q Consensus 276 aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp 346 (396)
|+|.+++..+++...+..+ ++.+.+......++.|+||++||+..+...+..|..||+.+|..|.+...+.
T Consensus 771 AiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~~ 842 (1012)
T TIGR03315 771 AVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGLN 842 (1012)
T ss_pred ecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccCC
Confidence 9999999888876555543 3455555555678899999999997666678899999999999998765543
No 66
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.75 E-value=3.4e-17 Score=173.48 Aligned_cols=250 Identities=18% Similarity=0.165 Sum_probs=147.2
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCCCccc
Q psy2343 42 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSGYFSG 120 (396)
Q Consensus 42 ~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g~~~g 120 (396)
.|.|....++.+...+.++++|+. +++++.|. . .++.++.. ...||+||||||+. .|+.|++||...+
T Consensus 473 ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg------~--~~~~~~l~~~~~yDaViIATGa~-~pr~l~IpG~~l~ 541 (1006)
T PRK12775 473 IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG------K--TFTVPQLMNDKGFDAVFLGVGAG-APTFLGIPGEFAG 541 (1006)
T ss_pred CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC------C--ccCHHHHhhccCCCEEEEecCCC-CCCCCCCCCcCCC
Confidence 345545567888888888889987 88886541 1 12222211 24699999999983 5888889993223
Q ss_pred ceeecccC--------------CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHH
Q psy2343 121 EILHSMDY--------------KSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQW 185 (396)
Q Consensus 121 ~~~hs~~~--------------~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~ 185 (396)
.+++..+| .+.....||+|+|||+|++|+|+|..+.+.+ +.|+++.|+....+|...
T Consensus 542 gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~-------- 613 (1006)
T PRK12775 542 QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARI-------- 613 (1006)
T ss_pred CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCH--------
Confidence 34444322 1222357999999999999999999988874 568999887643333210
Q ss_pred HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecCCcce-----EeC-
Q psy2343 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKDDIKN-----LNG- 257 (396)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~~i~~-----i~~- 257 (396)
.-.+... ..|+. ........+.+ .+|+++-.. +.+ .+.
T Consensus 614 ---------------~e~~~a~--------eeGI~----------~~~~~~p~~i~~~~~G~v~~v~-~~~~~l~~~d~~ 659 (1006)
T PRK12775 614 ---------------EEIRHAK--------EEGID----------FFFLHSPVEIYVDAEGSVRGMK-VEEMELGEPDEK 659 (1006)
T ss_pred ---------------HHHHHHH--------hCCCE----------EEecCCcEEEEeCCCCeEEEEE-EEEEEecccCCC
Confidence 0000000 00100 00000011111 112222100 000 000
Q ss_pred -CeEEecCCc--EecCcEEEEccCCCCCCCCCCc-cccccc-CCcccccc----ccccCCCCcEEEEecccCcCchhhHH
Q psy2343 258 -NIVHFVDDT--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFI----HIAPRNLDNIFFFGFVNAAAGLGDGL 328 (396)
Q Consensus 258 -~~v~~~dG~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~----~~~~~~~p~l~~iG~~~~~~~~~~~a 328 (396)
......+|+ .+++|.||+|+|+.++..++.. ..+..+ .+.+.+.+ ..+.|+.|+||++||+..+...+..|
T Consensus 660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~A 739 (1006)
T PRK12775 660 GRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILA 739 (1006)
T ss_pred CCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHH
Confidence 000111333 4899999999999999776543 234433 24444443 35688999999999998766677889
Q ss_pred HHHHHHHHHHHhcccc
Q psy2343 329 RLQGQFIRSYIQAFIR 344 (396)
Q Consensus 329 e~qa~~~a~~l~~~~~ 344 (396)
..+|+.+|..+...+.
T Consensus 740 i~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 740 MGAGRRAARSIATYLR 755 (1006)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988766554
No 67
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.75 E-value=2.4e-17 Score=157.11 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE----eCCeEEEEEcc--CcEEEcCEEEEcccCCCCCCCCCCCC-Cccc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ----YEDIWEVELSN--GKKKKYDFIAVCNGAQRVARYPNYSG-YFSG 120 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~----~~~~~~V~~~~--g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g 120 (396)
.+++...++++.++ ++. +++++.|..+.. .++.|...... +..+.||+||||||+. .|..|++|| ...+
T Consensus 68 ~~~~~~~~~~l~~~-~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~~ 143 (352)
T PRK12770 68 IERVREGVKELEEA-GVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW-KSRKLGIPGEDLPG 143 (352)
T ss_pred HHHHHHHHHHHHhC-CeE--EecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC-CCCcCCCCCccccC
Confidence 45566666666554 765 778888866533 12333322211 2236899999999983 477788888 4332
Q ss_pred ceeecc---------cC-----CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCceeecCCCCCCChhHH
Q psy2343 121 EILHSM---------DY-----KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQW 185 (396)
Q Consensus 121 ~~~hs~---------~~-----~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~~~~p~~~~~~~~~~~ 185 (396)
++++. .+ +....+++++|+|||+|.+|+|+|..++..+.+ |+++.|++.+..|.
T Consensus 144 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~---------- 212 (352)
T PRK12770 144 -VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA---------- 212 (352)
T ss_pred -ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC----------
Confidence 22211 11 111234689999999999999999999877665 99999875321110
Q ss_pred HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----e
Q psy2343 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----I 259 (396)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~ 259 (396)
.. ...+.+. . . +|++ ...+.+++++ .
T Consensus 213 --------~~-----~~~~~l~-~-------~---------------------------gi~i~~~~~v~~i~~~~~~~~ 244 (352)
T PRK12770 213 --------GK-----YEIERLI-A-------R---------------------------GVEFLELVTPVRIIGEGRVEG 244 (352)
T ss_pred --------CH-----HHHHHHH-H-------c---------------------------CCEEeeccCceeeecCCcEeE
Confidence 00 1111111 0 1 1111 1112222211 1
Q ss_pred EE------------------ec--CCcEecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEec
Q psy2343 260 VH------------------FV--DDTHIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGF 317 (396)
Q Consensus 260 v~------------------~~--dG~~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~ 317 (396)
|. .. +++.+++|.||+|+|++|+..+..+ ..+..+ ++.+.+... +.++.|+||++||
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~vyaiGD 323 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMTSREGVFAAGD 323 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-cccCCCCEEEEcc
Confidence 11 11 2346899999999999998776654 334333 344555544 4678999999999
Q ss_pred ccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 318 VNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 318 ~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+......+..|..||+.+|..+...+
T Consensus 324 ~~~~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 324 VVTGPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHH
Confidence 97655677789999999999887654
No 68
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.75 E-value=3.7e-17 Score=161.03 Aligned_cols=242 Identities=19% Similarity=0.187 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
..++.++....++.+|+. ++++++|.. .++.++. ...||+||+|||+.. +..+.+|| ...| +++..
T Consensus 190 ~~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~~~~~~~-~~~~D~vilAtGa~~-~~~~~i~g~~~~g-V~~a~ 256 (467)
T TIGR01318 190 DKAVLSRRREIFTAMGIE--FHLNCEVGR--------DISLDDL-LEDYDAVFLGVGTYR-SMRGGLPGEDAPG-VLQAL 256 (467)
T ss_pred CHHHHHHHHHHHHHCCCE--EECCCEeCC--------ccCHHHH-HhcCCEEEEEeCCCC-CCcCCCCCcCCCC-cEEHH
Confidence 456778888888889987 888887632 1122221 246999999999932 23456777 4333 22211
Q ss_pred c-----------CC---C--CCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343 127 D-----------YK---S--PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 189 (396)
Q Consensus 127 ~-----------~~---~--~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~ 189 (396)
+ .. . .....+|+|+|||+|++|+|+|..+.+.+ ++|+++.|++...+|...
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~------------ 324 (467)
T TIGR01318 257 PFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSR------------ 324 (467)
T ss_pred HHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCH------------
Confidence 1 00 0 11246899999999999999999988875 689999998754333220
Q ss_pred CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeE---ec-CCcceEeCCe---E
Q psy2343 190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL---PK-DDIKNLNGNI---V 260 (396)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~---~~-~~i~~i~~~~---v 260 (396)
.....+. ..|+. ...+....+.. ..|+++ +. ......+.++ .
T Consensus 325 -----------~e~~~~~--------~~GV~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~ 375 (467)
T TIGR01318 325 -----------REVANAR--------EEGVE----------FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRP 375 (467)
T ss_pred -----------HHHHHHH--------hcCCE----------EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccc
Confidence 0001000 00110 00000000110 011111 00 0000000000 0
Q ss_pred EecCC--cEecCcEEEEccCCCCCC-CCCCcccccccC-Cccccc---cccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343 261 HFVDD--THIEVDTIIYATGYNRHF-PFIDKEKLEWKL-GIPDLF---IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ 333 (396)
Q Consensus 261 ~~~dG--~~~~~D~VI~aTG~~~~~-~~l~~~~~~~~~-~~~~l~---~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~ 333 (396)
...+| ..+++|.||+|+|++++. .++....+.++. +.+.+. ...+.++.|+||++||+......+..|..||+
T Consensus 376 ~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~ 455 (467)
T TIGR01318 376 VPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGR 455 (467)
T ss_pred eecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHH
Confidence 11122 258999999999999984 566554455533 444443 13456889999999999865556778999999
Q ss_pred HHHHHHhccc
Q psy2343 334 FIRSYIQAFI 343 (396)
Q Consensus 334 ~~a~~l~~~~ 343 (396)
.+|..+...+
T Consensus 456 ~aA~~i~~~L 465 (467)
T TIGR01318 456 QAAQGILDWL 465 (467)
T ss_pred HHHHHHHHHh
Confidence 9999887543
No 69
>KOG2495|consensus
Probab=99.74 E-value=2.8e-17 Score=151.28 Aligned_cols=267 Identities=15% Similarity=0.185 Sum_probs=165.7
Q ss_pred ceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE--ccC----cEE
Q psy2343 21 SLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG----KKK 94 (396)
Q Consensus 21 ~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~--~~g----~~~ 94 (396)
++.+.+|+..+.|.-. .|...-+-..-.-+.+-++..+.+-+-. .-.+..+.++|+++.++..+.. .++ -.+
T Consensus 80 dV~vVSPRnyFlFTPL-LpS~~vGTve~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i 157 (491)
T KOG2495|consen 80 DVTVVSPRNYFLFTPL-LPSTTVGTVELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVI 157 (491)
T ss_pred ceEEeccccceEEeec-cCCccccceeehhhhhhHHHHhhccCCC-ceEEecccEeecccccEEEEeeeccCCCcceeee
Confidence 3677888888877633 1222112223456777888877765433 1234677788888766544443 233 247
Q ss_pred EcCEEEEcccCCCCCCCCCCCC-----CcccceeecccCCCC-------CCC---------CCCeEEEEcCCCcHHHHHH
Q psy2343 95 KYDFIAVCNGAQRVARYPNYSG-----YFSGEILHSMDYKSP-------DQI---------RNKRVLVVGAGNSGCDIAV 153 (396)
Q Consensus 95 ~~d~vvvAtG~~~~p~~P~~~g-----~~~g~~~hs~~~~~~-------~~~---------~~k~VvVVG~G~sa~d~a~ 153 (396)
.||+||+|+|+ .++.+.+|| .|-..+-++...+.. ..+ +--++||||||.||+|.|.
T Consensus 158 ~YDyLViA~GA--~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAa 235 (491)
T KOG2495|consen 158 GYDYLVIAVGA--EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAA 235 (491)
T ss_pred cccEEEEeccC--CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehH
Confidence 89999999999 899999998 343344444333111 011 1136999999999999999
Q ss_pred HHhcCC--------------CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCC
Q psy2343 154 DASHHS--------------EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGL 219 (396)
Q Consensus 154 ~l~~~~--------------~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (396)
||+..- -+||++.-.+. ....+..++...+.
T Consensus 236 EL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~---------------------------iL~mFdkrl~~yae-------- 280 (491)
T KOG2495|consen 236 ELADFIPEDLRKIYPELKKDIKVTLIEAADH---------------------------ILNMFDKRLVEYAE-------- 280 (491)
T ss_pred HHHHHHHHHHHHhhhcchhheEEEeeccchh---------------------------HHHHHHHHHHHHHH--------
Confidence 998741 13444443321 00022222221111
Q ss_pred CCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCC----cEecCcEEEEccCCCCCCCCCCcccccc
Q psy2343 220 KKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDD----THIEVDTIIYATGYNRHFPFIDKEKLEW 293 (396)
Q Consensus 220 ~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG----~~~~~D~VI~aTG~~~~~~~l~~~~~~~ 293 (396)
+.+.+-.|.+ .+.|..++++.++..++ +++++-++|||||-.+. |+........
T Consensus 281 -------------------~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i 340 (491)
T KOG2495|consen 281 -------------------NQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQI 340 (491)
T ss_pred -------------------HHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcC
Confidence 1112223443 44577888888776544 45899999999999986 4433221111
Q ss_pred -c--CCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhccccCC
Q psy2343 294 -K--LGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFIRKS 346 (396)
Q Consensus 294 -~--~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~~lp 346 (396)
+ ..++.+.+-+...+.+|||||||+... .++.+.|+.||.++|+++....+..
T Consensus 341 ~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~ 399 (491)
T KOG2495|consen 341 DEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGG 399 (491)
T ss_pred CccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 225677788888899999999999732 3477899999999999997665544
No 70
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.74 E-value=1.3e-16 Score=163.68 Aligned_cols=243 Identities=18% Similarity=0.175 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++.++....++.+|+. ++++++|.. .++.++. ...||+|++|||++ .+..+.++| ...| +++..
T Consensus 376 ~~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~i~~~~~-~~~~DavilAtGa~-~~~~l~i~g~~~~G-v~~a~ 442 (654)
T PRK12769 376 DKSLLARRREIFSAMGIE--FELNCEVGK--------DISLESL-LEDYDAVFVGVGTY-RSMKAGLPNEDAPG-VYDAL 442 (654)
T ss_pred CHHHHHHHHHHHHHCCeE--EECCCEeCC--------cCCHHHH-HhcCCEEEEeCCCC-CCCCCCCCCCCCCC-eEEhH
Confidence 346666667777888876 788887621 1111111 13699999999984 344556777 4444 22111
Q ss_pred --------------cCCC-C-CCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343 127 --------------DYKS-P-DQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 189 (396)
Q Consensus 127 --------------~~~~-~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~ 189 (396)
.+.+ . ..+.||+|+|||+|++|+|+|..+.+.+ ++|+++.|++...+|...
T Consensus 443 ~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~------------ 510 (654)
T PRK12769 443 PFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSK------------ 510 (654)
T ss_pred HHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCH------------
Confidence 0111 1 1357899999999999999999877764 679999988643333210
Q ss_pred CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecC----CcceEeCC---eE
Q psy2343 190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKD----DIKNLNGN---IV 260 (396)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~----~i~~i~~~---~v 260 (396)
...+.+. ..|+. ...+....+.+ ..|+++-.. .....+.+ ..
T Consensus 511 -----------~e~~~~~--------~~Gv~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~ 561 (654)
T PRK12769 511 -----------KEVKNAR--------EEGAN----------FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRP 561 (654)
T ss_pred -----------HHHHHHH--------HcCCe----------EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcc
Confidence 1111110 00100 00000011111 112221000 00000000 01
Q ss_pred EecCCc--EecCcEEEEccCCCCCC-CCCCcccccccC-Cccccccc---cccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343 261 HFVDDT--HIEVDTIIYATGYNRHF-PFIDKEKLEWKL-GIPDLFIH---IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ 333 (396)
Q Consensus 261 ~~~dG~--~~~~D~VI~aTG~~~~~-~~l~~~~~~~~~-~~~~l~~~---~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~ 333 (396)
....|+ .+++|.||+|+|+.++. .+++...++.+. +.+.+... .+.|+.|+||++||+..+..++..|..||+
T Consensus 562 ~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr 641 (654)
T PRK12769 562 VPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGR 641 (654)
T ss_pred eeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHH
Confidence 111233 48999999999999874 566655565543 44444332 357899999999999876677788999999
Q ss_pred HHHHHHhcccc
Q psy2343 334 FIRSYIQAFIR 344 (396)
Q Consensus 334 ~~a~~l~~~~~ 344 (396)
.+|..+...+.
T Consensus 642 ~AA~~I~~~L~ 652 (654)
T PRK12769 642 HAAQGIIDWLG 652 (654)
T ss_pred HHHHHHHHHhC
Confidence 99998876543
No 71
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.73 E-value=1.5e-17 Score=162.72 Aligned_cols=237 Identities=15% Similarity=0.143 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++.---.++.+++++. .+.+.+|+.|++..+ .|++++|.+..||.+|+|||+ .|.+|++|| ..+| ++...
T Consensus 58 ~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS--~pfi~PiPG~~~~~-v~~~R 130 (793)
T COG1251 58 AEDISLNRNDWYEENGIT--LYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGS--YPFILPIPGSDLPG-VFVYR 130 (793)
T ss_pred HHHHhccchhhHHHcCcE--EEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCc--cccccCCCCCCCCC-eeEEe
Confidence 355555556666777876 888999999998655 788889999999999999999 899999999 4333 45544
Q ss_pred cCCCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343 127 DYKSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 201 (396)
Q Consensus 127 ~~~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 201 (396)
++.+.+.. ..++-+|||+|.-|.|.|..|...+-+|++++-.+.. +.+ .
T Consensus 131 ~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--------------Mer------------Q 184 (793)
T COG1251 131 TIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--------------MER------------Q 184 (793)
T ss_pred cHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--------------HHH------------h
Confidence 44443311 3456799999999999999999998888888765411 000 0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceE----eCCeEEecCCcEecCcEEEEcc
Q psy2343 202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL----NGNIVHFVDDTHIEVDTIIYAT 277 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i----~~~~v~~~dG~~~~~D~VI~aT 277 (396)
+.+.--+.+...++..|+ ++.+....+++ ...+|.|+||+.+++|.||||+
T Consensus 185 LD~~ag~lL~~~le~~Gi-------------------------~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~ 239 (793)
T COG1251 185 LDRTAGRLLRRKLEDLGI-------------------------KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAV 239 (793)
T ss_pred hhhHHHHHHHHHHHhhcc-------------------------eeecccchhhhhcCcceeeEeecCCCcccceeEEEec
Confidence 111000011111111111 12221112222 1257999999999999999999
Q ss_pred CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcccc
Q psy2343 278 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 278 G~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
|++|+..+-...++..+. ++.+.++ +.+++|+||++|.+... .++..-+--||+.+|..+.+...
T Consensus 240 GIrPn~ela~~aGlavnr-GIvvnd~-mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 240 GIRPNDELAKEAGLAVNR-GIVVNDY-MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ccccccHhHHhcCcCcCC-Ceeeccc-ccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 999998887777777665 4555544 58999999999998642 23444566789999998887744
No 72
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.72 E-value=1.4e-16 Score=157.36 Aligned_cols=241 Identities=16% Similarity=0.130 Sum_probs=137.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccce
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEI 122 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~ 122 (396)
.|....++.+...+.+..+++. +++++.|.. + ++. +.....||+||+|||+. .|+.+.+|| ...| +
T Consensus 188 ~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~-------~~~-~~~~~~~d~vvlAtGa~-~~~~l~ipG~~~~g-V 254 (471)
T PRK12810 188 DFKLEKEVIDRRIELMEAEGIE--FRTNVEVGK-D-------ITA-EELLAEYDAVFLGTGAY-KPRDLGIPGRDLDG-V 254 (471)
T ss_pred cccCCHHHHHHHHHHHHhCCcE--EEeCCEECC-c-------CCH-HHHHhhCCEEEEecCCC-CCCcCCCCCccCCC-c
Confidence 3333456677777777888887 888876631 1 111 11124799999999993 366777888 4443 2
Q ss_pred eeccc-------------CCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHh
Q psy2343 123 LHSMD-------------YKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 188 (396)
Q Consensus 123 ~hs~~-------------~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~ 188 (396)
++..+ +.......+|+|+|||+|++|+|+|..+.+. +++|+...+.+ +|......+. .
T Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~~-----~ 326 (471)
T PRK12810 255 HFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNKNN-----P 326 (471)
T ss_pred EEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCcccccccc-----C
Confidence 22111 1112345799999999999999999887776 45788554332 1111000000 0
Q ss_pred hCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC-CeEecCCcceEeC--C-------
Q psy2343 189 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNG--N------- 258 (396)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g-~i~~~~~i~~i~~--~------- 258 (396)
.|.+.. .+. .......| .+.....+.++.+ +
T Consensus 327 ~~~~~~------~~~---------------------------------~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~ 367 (471)
T PRK12810 327 WPYWPM------KLE---------------------------------VSNAHEEGVEREFNVQTKEFEGENGKVTGVKV 367 (471)
T ss_pred Ccccch------HHH---------------------------------HHHHHHcCCeEEeccCceEEEccCCEEEEEEE
Confidence 000000 000 00001111 1111223333321 1
Q ss_pred -eEEecC-------C--cEecCcEEEEccCCCCCC-CCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchhh
Q psy2343 259 -IVHFVD-------D--THIEVDTIIYATGYNRHF-PFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGD 326 (396)
Q Consensus 259 -~v~~~d-------G--~~~~~D~VI~aTG~~~~~-~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~ 326 (396)
.+.+.+ | ..+++|.||+|+|++++. .+++...+..+. +.+.+.+..+.++.|+||++||+......+.
T Consensus 368 ~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~ 447 (471)
T PRK12810 368 VRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVV 447 (471)
T ss_pred EEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHH
Confidence 112222 2 358999999999999875 466655555543 4455443445789999999999986555667
Q ss_pred HHHHHHHHHHHHHhcccc
Q psy2343 327 GLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 327 ~ae~qa~~~a~~l~~~~~ 344 (396)
.|..||+.+|..+...+.
T Consensus 448 ~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 448 WAIAEGRQAARAIDAYLM 465 (471)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 788999998887765543
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.1e-16 Score=141.56 Aligned_cols=211 Identities=19% Similarity=0.213 Sum_probs=153.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGE 121 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~ 121 (396)
.+.++..-|+.-+++|+++ +.--.+.+++.+. ++..+|++.+|....++.||+|||+ +-+-..+|| +|+.+
T Consensus 264 eGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA--rWRn~nvPGE~e~rnK 339 (520)
T COG3634 264 EGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA--RWRNMNVPGEDEYRNK 339 (520)
T ss_pred cchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc--chhcCCCCchHHHhhC
Confidence 4778999999999999887 5545566777774 5678999999999999999999999 444557888 78777
Q ss_pred eeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 201 (396)
Q Consensus 122 ~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 201 (396)
-+..|..|+..-|+||+|+|||||+||+|.|.+|+...++||++.=.+. ++.. .
T Consensus 340 GVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e----------------------LkAD----~ 393 (520)
T COG3634 340 GVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE----------------------LKAD----A 393 (520)
T ss_pred CeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh----------------------hhhH----H
Confidence 7889999999999999999999999999999999999999999864331 1100 1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEeCC-----eEEec---CCcE--ec
Q psy2343 202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLNGN-----IVHFV---DDTH--IE 269 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~~~-----~v~~~---dG~~--~~ 269 (396)
+.++.++. + .++++.. .-+++.++ ++... +|+. ++
T Consensus 394 VLq~kl~s---------l------------------------~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~ 440 (520)
T COG3634 394 VLQDKLRS---------L------------------------PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLE 440 (520)
T ss_pred HHHHHHhc---------C------------------------CCcEEEecceeeEEecCCceecceEEEeccCCceeEEE
Confidence 22111100 0 1444332 23344443 34443 3433 67
Q ss_pred CcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc
Q psy2343 270 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA 321 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~ 321 (396)
-+-|+.-.|.-|+..||+..+-....+.+.+.+ .-.+++|++|++||+...
T Consensus 441 LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~-~g~TsvpGvFAAGD~T~~ 491 (520)
T COG3634 441 LEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDA-RGETNVPGVFAAGDCTTV 491 (520)
T ss_pred eeeeEEEEecccChhHhhchhhcCcCccEEEec-CCCcCCCceeecCcccCC
Confidence 889999999999999999763222334454444 458999999999999753
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.71 E-value=3.9e-16 Score=159.43 Aligned_cols=240 Identities=16% Similarity=0.204 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc-
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM- 126 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~- 126 (396)
+++.++....++.+|+. ++++++|.. .++..+. ...||+|++|||+. .+..+.++| ...| ++++.
T Consensus 360 ~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~~~~~~l-~~~~DaV~latGa~-~~~~~~i~g~~~~g-v~~a~~ 426 (639)
T PRK12809 360 KTVLSQRREIFTAMGID--FHLNCEIGR--------DITFSDL-TSEYDAVFIGVGTY-GMMRADLPHEDAPG-VIQALP 426 (639)
T ss_pred HHHHHHHHHHHHHCCeE--EEcCCccCC--------cCCHHHH-HhcCCEEEEeCCCC-CCCCCCCCCCccCC-cEeHHH
Confidence 46667777778888887 888887631 1222221 24699999999995 344566777 4444 22210
Q ss_pred ----------cCCC-----CCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHhhC
Q psy2343 127 ----------DYKS-----PDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 190 (396)
Q Consensus 127 ----------~~~~-----~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p 190 (396)
.... .....+|+|+|||+|.+|+|+|..+.+. +++|+++.|+....+|.. + .
T Consensus 427 ~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~----~-~------- 494 (639)
T PRK12809 427 FLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS----R-K------- 494 (639)
T ss_pred HHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC----H-H-------
Confidence 0111 1234789999999999999999987766 578999999864333321 0 0
Q ss_pred ccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecCCcceE-----eCC---eE
Q psy2343 191 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKDDIKNL-----NGN---IV 260 (396)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~~i~~i-----~~~---~v 260 (396)
.+. ... ..|+. ........+.. ..|+++... +.+. +++ ..
T Consensus 495 ----------e~~-~a~--------~eGv~----------~~~~~~~~~i~~~~~g~v~~v~-~~~~~~~~~~~~g~~~~ 544 (639)
T PRK12809 495 ----------EVV-NAR--------EEGVE----------FQFNVQPQYIACDEDGRLTAVG-LIRTAMGEPGPDGRRRP 544 (639)
T ss_pred ----------HHH-HHH--------HcCCe----------EEeccCCEEEEECCCCeEEEEE-EEEEEecCcCCCCCccc
Confidence 000 000 00110 00000000111 112222100 0000 000 01
Q ss_pred EecCCc--EecCcEEEEccCCCCC-CCCCCcccccccC-Ccccccc---ccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343 261 HFVDDT--HIEVDTIIYATGYNRH-FPFIDKEKLEWKL-GIPDLFI---HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ 333 (396)
Q Consensus 261 ~~~dG~--~~~~D~VI~aTG~~~~-~~~l~~~~~~~~~-~~~~l~~---~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~ 333 (396)
....|+ .+++|.||+|+|++++ ..+++...++.+. +.+.+.. ..+.|+.|+||++||+..+..++..|..||+
T Consensus 545 ~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr 624 (639)
T PRK12809 545 RPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGR 624 (639)
T ss_pred eecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHH
Confidence 111233 4899999999999986 4566655555433 3343322 2357889999999999876667788999999
Q ss_pred HHHHHHhccc
Q psy2343 334 FIRSYIQAFI 343 (396)
Q Consensus 334 ~~a~~l~~~~ 343 (396)
.+|..+...+
T Consensus 625 ~AA~~i~~~l 634 (639)
T PRK12809 625 QAARDMLTLF 634 (639)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.68 E-value=6.3e-16 Score=156.14 Aligned_cols=226 Identities=20% Similarity=0.208 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEE-EEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEV-INLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V-~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.++.+.-.+.+..+++. +++++.+ ..+..+ . ....||+||+|||.. .+..+.++| ...| +++..
T Consensus 187 ~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~---------~-~~~~~D~Vi~AtG~~-~~~~~~i~g~~~~g-v~~~~ 252 (564)
T PRK12771 187 REVLDAEIQRILDLGVE--VRLGVRVGEDITLE---------Q-LEGEFDAVFVAIGAQ-LGKRLPIPGEDAAG-VLDAV 252 (564)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCEECCcCCHH---------H-HHhhCCEEEEeeCCC-CCCcCCCCCCccCC-cEEHH
Confidence 45555555566778876 7788765 332211 0 113589999999984 233446776 3333 22221
Q ss_pred cCC-----CCCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 127 DYK-----SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 127 ~~~-----~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
.+. ......+|+|+|||+|.+|+|++..+.+.+ ++|+++.|.+...+|...
T Consensus 253 ~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~----------------------- 309 (564)
T PRK12771 253 DFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHD----------------------- 309 (564)
T ss_pred HHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCH-----------------------
Confidence 111 113456899999999999999999888775 789999987632222110
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCe----------EEe----c---
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI----------VHF----V--- 263 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~----------v~~----~--- 263 (396)
....... ..|+ ++.....+.++.++. +.+ .
T Consensus 310 ~~~~~a~--------~~GV-------------------------ki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 356 (564)
T PRK12771 310 EEIEEAL--------REGV-------------------------EINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR 356 (564)
T ss_pred HHHHHHH--------HcCC-------------------------EEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence 0000000 0000 111111222222110 110 1
Q ss_pred ----CCc--EecCcEEEEccCCCCCCCCCCc-ccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343 264 ----DDT--HIEVDTIIYATGYNRHFPFIDK-EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 336 (396)
Q Consensus 264 ----dG~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a 336 (396)
+|+ .+++|.||+|+|+.++.++++. ..+..+++.+.+....+.++.|+||++||+..+...+..|..||+.+|
T Consensus 357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA 436 (564)
T PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAA 436 (564)
T ss_pred eeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHH
Confidence 232 5899999999999999888874 344434466666666778999999999999876667788899999998
Q ss_pred HHHhcccc
Q psy2343 337 SYIQAFIR 344 (396)
Q Consensus 337 ~~l~~~~~ 344 (396)
..+...+.
T Consensus 437 ~~i~~~L~ 444 (564)
T PRK12771 437 RNIDAFLG 444 (564)
T ss_pred HHHHHHHc
Confidence 87755543
No 76
>PRK13984 putative oxidoreductase; Provisional
Probab=99.65 E-value=2e-15 Score=153.94 Aligned_cols=240 Identities=15% Similarity=0.177 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++..+....++++++. ++++++|.. .++.++. ...||+||+|||+. .|+.+++|| ...+ ++++.
T Consensus 332 ~~~~~~~~~~~~~~~gv~--~~~~~~v~~--------~~~~~~~-~~~yD~vilAtGa~-~~r~l~i~G~~~~g-v~~a~ 398 (604)
T PRK13984 332 PDEALDKDIAFIEALGVK--IHLNTRVGK--------DIPLEEL-REKHDAVFLSTGFT-LGRSTRIPGTDHPD-VIQAL 398 (604)
T ss_pred CHHHHHHHHHHHHHCCcE--EECCCEeCC--------cCCHHHH-HhcCCEEEEEcCcC-CCccCCCCCcCCcC-eEeHH
Confidence 455666666677788876 888887732 0111111 25799999999983 467778888 3333 23322
Q ss_pred cCCC---------C-CCCCCCeEEEEcCCCcHHHHHHHHhcCC------CcEEEEecc-CceeecCCCCCCChhHHHHhh
Q psy2343 127 DYKS---------P-DQIRNKRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRR-GYHYYPKFIDGKPTPQWMLQL 189 (396)
Q Consensus 127 ~~~~---------~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~------~~V~l~~r~-~~~~~p~~~~~~~~~~~~~~~ 189 (396)
++.. . ....+|+|+|||||.+|+|+|..+++.+ .+|+++..+ ....+|.
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~-------------- 464 (604)
T PRK13984 399 PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA-------------- 464 (604)
T ss_pred HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC--------------
Confidence 2211 1 1234799999999999999999998763 367877532 2111111
Q ss_pred CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeEecC--CcceE-eCCe---EEe
Q psy2343 190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILPKD--DIKNL-NGNI---VHF 262 (396)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~~~~--~i~~i-~~~~---v~~ 262 (396)
.. .......+ .|+. ...+....+.. .+|+++... .+... +.++ ...
T Consensus 465 --~~-------~e~~~~~~--------~GV~----------i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~ 517 (604)
T PRK13984 465 --DM-------EEIEEGLE--------EGVV----------IYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKF 517 (604)
T ss_pred --CH-------HHHHHHHH--------cCCE----------EEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCcccee
Confidence 00 00010000 0110 00000000110 122222100 00000 0001 111
Q ss_pred cC--CcEecCcEEEEccCCCCCCCCCCcc---cccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHH
Q psy2343 263 VD--DTHIEVDTIIYATGYNRHFPFIDKE---KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 337 (396)
Q Consensus 263 ~d--G~~~~~D~VI~aTG~~~~~~~l~~~---~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~ 337 (396)
.+ +..+++|.||+|+|++++..+|... .+..+.+.+.+.+ .+.|+.|+||++||+.... ....|..+|+.+|.
T Consensus 518 ~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~-~~~Ts~~gVfAaGD~~~~~-~~v~Ai~~G~~AA~ 595 (604)
T PRK13984 518 DESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNE-YGQTSIPWLFAGGDIVHGP-DIIHGVADGYWAAE 595 (604)
T ss_pred cCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCC-CCccCCCCEEEecCcCCch-HHHHHHHHHHHHHH
Confidence 12 2358999999999999998887642 2333445555554 4678999999999998654 44678999999999
Q ss_pred HHhccc
Q psy2343 338 YIQAFI 343 (396)
Q Consensus 338 ~l~~~~ 343 (396)
.|...+
T Consensus 596 ~I~~~L 601 (604)
T PRK13984 596 GIDMYL 601 (604)
T ss_pred HHHHHh
Confidence 887654
No 77
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.64 E-value=7.4e-15 Score=145.33 Aligned_cols=264 Identities=15% Similarity=0.131 Sum_probs=142.0
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
|.|....++..+..+.++.+++. +++++.|.. .++. ++....||+||+|||.. .|..|.++| ...|
T Consensus 187 p~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~~~~-~~~~~~~d~VilAtGa~-~~~~l~i~G~~~~g- 253 (485)
T TIGR01317 187 PNMKLDKAIVDRRIDLLSAEGID--FVTNTEIGV--------DISA-DELKEQFDAVVLAGGAT-KPRDLPIPGRELKG- 253 (485)
T ss_pred CCccCCHHHHHHHHHHHHhCCCE--EECCCEeCC--------ccCH-HHHHhhCCEEEEccCCC-CCCcCCCCCcCCCC-
Confidence 33433455666666777778887 888887631 1111 11125699999999993 377788888 4444
Q ss_pred eeeccc--------CC-------CCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHH
Q psy2343 122 ILHSMD--------YK-------SPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQW 185 (396)
Q Consensus 122 ~~hs~~--------~~-------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~ 185 (396)
+....+ .. ......+|+|+|||+|++|+|+|..+.+. +++|+++.+.+... +.... +.
T Consensus 254 V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~-~~~~~----~~- 327 (485)
T TIGR01317 254 IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPP-EARAK----DN- 327 (485)
T ss_pred cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCCh-hhccc----cc-
Confidence 221110 01 01125789999999999999998777665 67899998764211 00000 00
Q ss_pred HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC--CCeEecC--Ccc-eEeCCe-
Q psy2343 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH--GDILPKD--DIK-NLNGNI- 259 (396)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--g~i~~~~--~i~-~i~~~~- 259 (396)
.+|.+-.. .+.....+...+ ..|+. + ...+....+.+.+ |+++-.. .++ ..++++
T Consensus 328 --~~~~~~~~-~e~~~a~~e~~~-------~~gv~-~--------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr 388 (485)
T TIGR01317 328 --PWPEWPRV-YRVDYAHEEAAA-------HYGRD-P--------REYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGK 388 (485)
T ss_pred --CCCccchh-hhhHHHHHhhhh-------hcCcc-c--------eEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCC
Confidence 01111000 000000011000 00000 0 0000011111111 1221000 000 000111
Q ss_pred --EEecCCc--EecCcEEEEccCCC-CCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343 260 --VHFVDDT--HIEVDTIIYATGYN-RHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ 333 (396)
Q Consensus 260 --v~~~dG~--~~~~D~VI~aTG~~-~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~ 333 (396)
.....|+ ++++|.||+|+|.. ++.++++...++.+ .+.+......+.|+.|+||++||+.........|..||+
T Consensus 389 ~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~ 468 (485)
T TIGR01317 389 WQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGR 468 (485)
T ss_pred ccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHH
Confidence 1111222 58999999999996 77788876656543 344544555678999999999999765566777899999
Q ss_pred HHHHHHhcccc
Q psy2343 334 FIRSYIQAFIR 344 (396)
Q Consensus 334 ~~a~~l~~~~~ 344 (396)
.+|..+...+.
T Consensus 469 ~AA~~i~~~L~ 479 (485)
T TIGR01317 469 KAAAAVDRYLM 479 (485)
T ss_pred HHHHHHHHHHh
Confidence 99988766543
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.58 E-value=5.9e-14 Score=137.29 Aligned_cols=115 Identities=24% Similarity=0.298 Sum_probs=78.3
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
|+++..+.+.+++.+++++.++. ++.|++|-. .++.++.. ..||+||+|||.. .++.+.+|| ...|
T Consensus 73 P~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg~--------dvtl~~L~-~~yDaVIlAtGa~-~~~~l~IpG~d~~g- 139 (491)
T PLN02852 73 PDHPETKNVTNQFSRVATDDRVS--FFGNVTLGR--------DVSLSELR-DLYHVVVLAYGAE-SDRRLGIPGEDLPG- 139 (491)
T ss_pred CCcchhHHHHHHHHHHHHHCCeE--EEcCEEECc--------cccHHHHh-hhCCEEEEecCCC-CCCCCCCCCCCCCC-
Confidence 56666677888888888887665 555655421 23443333 4699999999993 235667888 4333
Q ss_pred eeecccCC----------CC--CCCCCCeEEEEcCCCcHHHHHHHHhcC---------------------CCcEEEEecc
Q psy2343 122 ILHSMDYK----------SP--DQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRR 168 (396)
Q Consensus 122 ~~hs~~~~----------~~--~~~~~k~VvVVG~G~sa~d~a~~l~~~---------------------~~~V~l~~r~ 168 (396)
++...++. .. ....+++|+|||+|++|+|+|..|++. +++|+++.||
T Consensus 140 V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RR 219 (491)
T PLN02852 140 VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRR 219 (491)
T ss_pred eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcC
Confidence 33333321 11 123689999999999999999998763 5789999999
Q ss_pred Cc
Q psy2343 169 GY 170 (396)
Q Consensus 169 ~~ 170 (396)
+.
T Consensus 220 g~ 221 (491)
T PLN02852 220 GP 221 (491)
T ss_pred Ch
Confidence 84
No 79
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.54 E-value=4.8e-13 Score=142.82 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEE---------c---cC--cEEEcCEEEEcccCCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVEL---------S---NG--KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~---------~---~g--~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
.++.+-+...++.+ ++. ++.+++|..+........+.. . .+ .++.+|+||||||+ .++.|+
T Consensus 215 ~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa--~~r~~p 290 (985)
T TIGR01372 215 ADWAAATVAELTAMPEVT--LLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA--HERPLV 290 (985)
T ss_pred HHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC--CCcCCC
Confidence 34434444444444 355 778899988754211111110 0 01 14789999999999 788888
Q ss_pred CCC-Ccccceeec---ccCCCC-CCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHH
Q psy2343 114 YSG-YFSGEILHS---MDYKSP-DQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWML 187 (396)
Q Consensus 114 ~~g-~~~g~~~hs---~~~~~~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~ 187 (396)
+|| ...| ++.. ..+... ....+++|+|||+|.+|+|+|..|++.+ +.|+++.+++.. .
T Consensus 291 ipG~~~pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-~-------------- 354 (985)
T TIGR01372 291 FANNDRPG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-S-------------- 354 (985)
T ss_pred CCCCCCCC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-h--------------
Confidence 888 4444 2222 122222 2347899999999999999999999987 557777765410 0
Q ss_pred hhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEE
Q psy2343 188 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVH 261 (396)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~ 261 (396)
. .+. +.++...|++. ..+.++.++ +|.
T Consensus 355 -------~-----~l~-----------------------------------~~L~~~GV~i~~~~~v~~i~g~~~v~~V~ 387 (985)
T TIGR01372 355 -------P-----EAR-----------------------------------AEARELGIEVLTGHVVAATEGGKRVSGVA 387 (985)
T ss_pred -------H-----HHH-----------------------------------HHHHHcCCEEEcCCeEEEEecCCcEEEEE
Confidence 0 111 11111123332 335555443 355
Q ss_pred ec----CCcEecCcEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHH
Q psy2343 262 FV----DDTHIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 335 (396)
Q Consensus 262 ~~----dG~~~~~D~VI~aTG~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~ 335 (396)
+. +++++++|.|++++|++|+..++..... .|++.. ..+ .-.++.|+||++||+.... ....|..+++.+
T Consensus 388 l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~-~~~--~~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~A 463 (985)
T TIGR01372 388 VARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI-AAF--LPGDAVQGCILAGAANGLF-GLAAALADGAAA 463 (985)
T ss_pred EEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc-Cce--ecCCCCCCeEEeeccCCcc-CHHHHHHHHHHH
Confidence 54 4556899999999999999887654332 333221 111 1136689999999987543 456689999999
Q ss_pred HHHHhcccc
Q psy2343 336 RSYIQAFIR 344 (396)
Q Consensus 336 a~~l~~~~~ 344 (396)
|..+...+.
T Consensus 464 a~~i~~~lg 472 (985)
T TIGR01372 464 GAAAARAAG 472 (985)
T ss_pred HHHHHHHcC
Confidence 988765554
No 80
>KOG4716|consensus
Probab=99.52 E-value=3.5e-13 Score=120.70 Aligned_cols=238 Identities=17% Similarity=0.190 Sum_probs=140.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCc-EEEEEEEe---CCeEEEEE--ccCc--EEEcCEEEEcccCCCCCCCCCCCC--
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNT-EVINLEQY---EDIWEVEL--SNGK--KKKYDFIAVCNGAQRVARYPNYSG-- 116 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t-~V~~v~~~---~~~~~V~~--~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-- 116 (396)
....+.+-.++-.+..+---++.++. +|.-+.-- -+..++.. .+|+ .++++.+|||||. +|++|+|||
T Consensus 105 dW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~--RPrYp~IpG~~ 182 (503)
T KOG4716|consen 105 DWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL--RPRYPDIPGAK 182 (503)
T ss_pred cHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC--CCCCCCCCCce
Confidence 34556666666665554332233322 23333221 22233333 3343 3789999999999 999999999
Q ss_pred CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 117 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 117 ~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
++ .+.|.++-...-..| +-+|||+|..|.|+|..|+..+-+|++..|+=. +.
T Consensus 183 Ey---~ITSDDlFsl~~~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~------Lr------------------ 234 (503)
T KOG4716|consen 183 EY---GITSDDLFSLPYEPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL------LR------------------ 234 (503)
T ss_pred ee---eecccccccccCCCC-ceEEEccceeeeehhhhHhhcCCCcEEEEEEee------cc------------------
Confidence 33 356655544433345 578999999999999999999999999999731 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCe--EEec-----CCcEec
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI--VHFV-----DDTHIE 269 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~--v~~~-----dG~~~~ 269 (396)
.+.+.+.......++.+|++- ... . +-..|+.++.+. |... .+-+.+
T Consensus 235 ----GFDqdmae~v~~~m~~~Gikf-----~~~---~--------------vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 235 ----GFDQDMAELVAEHMEERGIKF-----LRK---T--------------VPERVEQIDDGKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred ----cccHHHHHHHHHHHHHhCCce-----eec---c--------------cceeeeeccCCcEEEEeecccccccccch
Confidence 222222222222222333310 000 0 001233333332 1111 122357
Q ss_pred CcEEEEccCCCCCCCC--CCcccccc--cCCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhc
Q psy2343 270 VDTIIYATGYNRHFPF--IDKEKLEW--KLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~--l~~~~~~~--~~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~ 341 (396)
.|.|+||.|..+...- |+..+.+. ..+.++ ......+++|.+|++||+... .-+.|.|.+.+|++|+.|-+
T Consensus 289 ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~-v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 289 YDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIP-VDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred hhhhhhhhccccchhhcCCCccceeecccCCccc-cChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 9999999999976543 33333333 223333 445568899999999998653 45778899999999987743
No 81
>KOG1335|consensus
Probab=99.49 E-value=3e-13 Score=123.07 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=161.8
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccC---CCCCC--CCCCCCCChHHHHHHHHHHHHHc--CCCCceEe-Cc
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVP---DYPMP--DNYPVYPNHSMMLDYLRSYAKKF--DVYNHSIF-NT 72 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~---~~p~p--~~~~~~p~~~~~~~Yl~~~~~~~--~l~~~i~~-~t 72 (396)
+++.+||++-+. .|.||-.+-..+.+|..- +|.-- +-.+--...+.+++-....++++ ++. -.| ..
T Consensus 70 kr~~LGGTcLnv----GcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~--~lfkkn 143 (506)
T KOG1335|consen 70 KRGTLGGTCLNV----GCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIE--NLFKKN 143 (506)
T ss_pred ccCccCceeeec----cccccHHHhhhhHHHHHHhhhHHHhcCccccceecCHHHHHHHHHHHHHHHhhHHH--HHhhhc
Confidence 467899999876 366655443333333211 11100 00111223445555555555543 121 111 22
Q ss_pred EEEEEEEe-----CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcC
Q psy2343 73 EVINLEQY-----EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGA 144 (396)
Q Consensus 73 ~V~~v~~~-----~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~ 144 (396)
+|+.+.-- ..+.++...+|. .+.++++|||||+- .+++|| .-.++.+-|++---....-.|+.+|||+
T Consensus 144 kV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe----V~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~ 219 (506)
T KOG1335|consen 144 KVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE----VTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGA 219 (506)
T ss_pred CeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc----cCCCCCeEecCceEEecCCccchhhCcceEEEEcC
Confidence 44444321 334445555554 48899999999982 345677 5555555555444444556789999999
Q ss_pred CCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy2343 145 GNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDH 224 (396)
Q Consensus 145 G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 224 (396)
|..|.|+..-..+.+.+||++.-.+... |. +.. .+.+.+.+.+.. .|+
T Consensus 220 G~IGLE~gsV~~rLGseVT~VEf~~~i~-~~-----------------mD~-----Eisk~~qr~L~k----Qgi----- 267 (506)
T KOG1335|consen 220 GYIGLEMGSVWSRLGSEVTVVEFLDQIG-GV-----------------MDG-----EISKAFQRVLQK----QGI----- 267 (506)
T ss_pred ceeeeehhhHHHhcCCeEEEEEehhhhc-cc-----------------cCH-----HHHHHHHHHHHh----cCc-----
Confidence 9999999999999999999997543211 10 101 111111111110 000
Q ss_pred CCCcccCccCchhhhcccCCCeEecCCcceEeC--C-e--EEec---CCc--EecCcEEEEccCCCCCCCCCCc--cccc
Q psy2343 225 PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N-I--VHFV---DDT--HIEVDTIIYATGYNRHFPFIDK--EKLE 292 (396)
Q Consensus 225 ~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~--~-~--v~~~---dG~--~~~~D~VI~aTG~~~~~~~l~~--~~~~ 292 (396)
+..+.+.+...+. + . |.+. +|+ +++||+++.|+|.+|-..-|+- -++.
T Consensus 268 --------------------kF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~ 327 (506)
T KOG1335|consen 268 --------------------KFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIE 327 (506)
T ss_pred --------------------eeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccc
Confidence 2223334444432 1 2 3332 333 4899999999999975544432 2233
Q ss_pred ccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 293 WKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 293 ~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.|. +++++ ..-|.+.+|+||+|||+..+..+.+-||.|+..+...+.|.-
T Consensus 328 ~D~r~rv~v-~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 328 LDKRGRVIV-NTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred cccccceec-cccccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 333 44444 445688999999999998877788899999999999998773
No 82
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.46 E-value=6.6e-13 Score=129.33 Aligned_cols=221 Identities=17% Similarity=0.157 Sum_probs=145.6
Q ss_pred HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCC----
Q psy2343 60 KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIR---- 135 (396)
Q Consensus 60 ~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~---- 135 (396)
...++. ++.+++|.+++.... +|.+.++ ++.||++++|||. .|..++ +.+...+++.....+...++
T Consensus 64 ~~~~i~--~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 134 (415)
T COG0446 64 RATGID--VRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGA--RPRPPP--ISDWEGVVTLRLREDAEALKGGAE 134 (415)
T ss_pred HhhCCE--EeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCC--cccCCC--ccccCceEEECCHHHHHHHHHHHh
Confidence 455665 888999999997655 5666677 6889999999999 777765 31111122222222222111
Q ss_pred -CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 136 -NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 136 -~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
-++|+|||+|..|+++|..+.+.+.+|+++...+...-+ . +.. .+.
T Consensus 135 ~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-~----------------~~~-----~~~----------- 181 (415)
T COG0446 135 PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-L----------------LDP-----EVA----------- 181 (415)
T ss_pred ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-h----------------hhH-----HHH-----------
Confidence 479999999999999999999999999999987632110 0 000 111
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCe-------EEecCCcEecCcEEEEccCCCCCCCC
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNI-------VHFVDDTHIEVDTIIYATGYNRHFPF 285 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~-------v~~~dG~~~~~D~VI~aTG~~~~~~~ 285 (396)
..+.+.+....|+ ....+.+++.+. +...++..+++|.+++++|.+++..+
T Consensus 182 --------------------~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l 241 (415)
T COG0446 182 --------------------EELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVL 241 (415)
T ss_pred --------------------HHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHH
Confidence 1111122222233 334556665432 67788899999999999999998555
Q ss_pred CCccc--ccccCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcc
Q psy2343 286 IDKEK--LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 286 l~~~~--~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~ 342 (396)
..... ....++.+.+++.+.....+++|++||+... ...++.+..|++.++..+.+.
T Consensus 242 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 242 ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 55443 3334456777666544358999999996431 345778899999999988865
No 83
>KOG0399|consensus
Probab=99.37 E-value=6.6e-13 Score=134.08 Aligned_cols=283 Identities=17% Similarity=0.167 Sum_probs=150.9
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 80 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~ 80 (396)
|++++||+-.|. .|++.+ .+-+.+.-.+...+-|++ +..|++|-+
T Consensus 1816 r~dr~ggll~yg------ipnmkl-----------------------dk~vv~rrv~ll~~egi~--f~tn~eigk---- 1860 (2142)
T KOG0399|consen 1816 RSDRVGGLLMYG------IPNMKL-----------------------DKFVVQRRVDLLEQEGIR--FVTNTEIGK---- 1860 (2142)
T ss_pred ecCCcCceeeec------CCccch-----------------------hHHHHHHHHHHHHhhCce--EEeeccccc----
Confidence 577888888877 565553 234667777777788876 556666522
Q ss_pred CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccc-----ceeecccCC--------CCCCCCCCeEEEEcCCC
Q psy2343 81 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-----EILHSMDYK--------SPDQIRNKRVLVVGAGN 146 (396)
Q Consensus 81 ~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g-----~~~hs~~~~--------~~~~~~~k~VvVVG~G~ 146 (396)
.|.. |+-....|+||+|+|+. .|+-.++|| ..+| ..+|...-. .....+||+|+|||||.
T Consensus 1861 ----~vs~-d~l~~~~daiv~a~gst-~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggd 1934 (2142)
T KOG0399|consen 1861 ----HVSL-DELKKENDAIVLATGST-TPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGD 1934 (2142)
T ss_pred ----cccH-HHHhhccCeEEEEeCCC-CCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCC
Confidence 1322 22235799999999995 788777888 4443 444433110 11245899999999999
Q ss_pred cHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343 147 SGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP 225 (396)
Q Consensus 147 sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 225 (396)
+|.|+...-.+. ++.|--+. .+|.+...+..|..+...|..++-. .-........-.++..|.++
T Consensus 1935 tg~dcigtsvrhg~~sv~n~e-----llp~pp~~ra~~npwpqwprvfrvd----ygh~e~~~~~g~dpr~y~vl----- 2000 (2142)
T KOG0399|consen 1935 TGTDCIGTSVRHGCKSVGNFE-----LLPQPPPERAPDNPWPQWPRVFRVD----YGHAEAKEHYGSDPRTYSVL----- 2000 (2142)
T ss_pred ccccccccchhhccceeccee-----ecCCCCcccCCCCCCccCceEEEee----cchHHHHHHhCCCcceeeee-----
Confidence 999988776665 45443332 3333322222222222223222210 00011111222333333331
Q ss_pred CCcccCccCchhhhcccCCCeEecCCcceEe----CCe----EEecCC-cEecCcEEEEccCCCCCCC-CCCcccccccC
Q psy2343 226 LDAAHPIMNSQILYHIGHGDILPKDDIKNLN----GNI----VHFVDD-THIEVDTIIYATGYNRHFP-FIDKEKLEWKL 295 (396)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~----~~~----v~~~dG-~~~~~D~VI~aTG~~~~~~-~l~~~~~~~~~ 295 (396)
.++-.-. .+|+++-.. +.+++ ..+ ++..+. +.+++|.||+|.||-..-+ ..+...++.+.
T Consensus 2001 --tk~f~~~-------~~g~v~gl~-~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~ 2070 (2142)
T KOG0399|consen 2001 --TKRFIGD-------DNGNVTGLE-TVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDP 2070 (2142)
T ss_pred --eeeeecc-------CCCceeeEE-EEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCc
Confidence 1111101 113333111 11111 111 222222 3489999999999985433 33332333322
Q ss_pred -CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHH----hccccCCCc
Q psy2343 296 -GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI----QAFIRKSKG 348 (396)
Q Consensus 296 -~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l----~~~~~lp~~ 348 (396)
+.+..-..-+.++++.+|++||++.+.+++..+...+|-+|+.+ .+..-||..
T Consensus 2071 rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~~~~~t~l~~~ 2128 (2142)
T KOG0399|consen 2071 RSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDELMGGTTDLPGD 2128 (2142)
T ss_pred cccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHHHhCCcccCCCC
Confidence 22333344478899999999999987666555555566655544 455457753
No 84
>KOG1346|consensus
Probab=99.28 E-value=4e-12 Score=116.83 Aligned_cols=217 Identities=14% Similarity=0.237 Sum_probs=136.3
Q ss_pred eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC-CCCC---Cccc--ceeec-ccCCCCCC-C-CCCe
Q psy2343 68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP-NYSG---YFSG--EILHS-MDYKSPDQ-I-RNKR 138 (396)
Q Consensus 68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P-~~~g---~~~g--~~~hs-~~~~~~~~-~-~~k~ 138 (396)
+..+-+|++|+-.++ .|.+.||.++.||.++||||. .|+-. .+.. ...- .++|. .+|+..+. . .-++
T Consensus 274 vl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~--~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~s 349 (659)
T KOG1346|consen 274 VLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGV--RPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQS 349 (659)
T ss_pred EEeccceEEeecccC--eEEecCCcEeehhheeeecCc--CcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcce
Confidence 556667777776554 678889999999999999999 77643 3332 2222 22332 12222211 1 1268
Q ss_pred EEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 139 VLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 139 VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
|.|||+|..|.|+|..|.+. +-+|+.+..... +.. .-||..+.+ +-
T Consensus 350 iTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----------nm~---kiLPeyls~-----wt------------ 399 (659)
T KOG1346|consen 350 ITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----------NME---KILPEYLSQ-----WT------------ 399 (659)
T ss_pred EEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----------Chh---hhhHHHHHH-----HH------------
Confidence 99999999999999999885 446777654431 000 003333322 11
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEe--C--CeEEecCCcEecCcEEEEccCCCCCCCCCCc
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLN--G--NIVHFVDDTHIEVDTIIYATGYNRHFPFIDK 288 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~--~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~ 288 (396)
.+.++.+.|.+.+ .|+++. . --+.+.||+++..|.||.|+|-.|+..+...
T Consensus 400 -----------------------~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 400 -----------------------IEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred -----------------------HHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 2334444555543 344332 1 2367899999999999999999999999988
Q ss_pred ccccccC--CccccccccccCCCCcEEEEecccCcCc---------hhhHHHHHHHHHHHHHhccc
Q psy2343 289 EKLEWKL--GIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 289 ~~~~~~~--~~~~l~~~~~~~~~p~l~~iG~~~~~~~---------~~~~ae~qa~~~a~~l~~~~ 343 (396)
.+++.+. +++.++..+.. ..||+++||+..... .+-.+-..+|++..++.|..
T Consensus 457 sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 457 SGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA 520 (659)
T ss_pred ccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence 8887643 56666655433 579999999865321 23344455666666655553
No 85
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=7.3e-10 Score=105.27 Aligned_cols=131 Identities=21% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCCc---e-EeCcEEEEEEEe--CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCC
Q psy2343 42 YPVYPNHSMMLDYLRSYAKKFDVYNH---S-IFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 115 (396)
Q Consensus 42 ~~~~p~~~~~~~Yl~~~~~~~~l~~~---i-~~~t~V~~v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~ 115 (396)
.+.||++..+.+|+.++.+.|--... + ...++++++.++ .+.|.+++.+|.+..||-+|+|||+ .+..++..
T Consensus 93 ~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh--~~~~~~~~ 170 (474)
T COG4529 93 GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGH--SAPPADPA 170 (474)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccC--CCCCcchh
Confidence 45699999999999988876522111 3 346788888887 6789999999999999999999999 33333222
Q ss_pred C-Ccccce-eecccCCCCC---CCCCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCC
Q psy2343 116 G-YFSGEI-LHSMDYKSPD---QIRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKF 176 (396)
Q Consensus 116 g-~~~g~~-~hs~~~~~~~---~~~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~ 176 (396)
. .+.|.. +++..|.... --.+.+|+|+|+|.+.+|....+.+.+ .+||+++|++ .+|+.
T Consensus 171 ~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG--l~~~~ 236 (474)
T COG4529 171 ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG--LVPRP 236 (474)
T ss_pred hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc--cccCC
Confidence 2 444422 2232232211 124567999999999999999999864 4699999998 44544
No 86
>PRK09897 hypothetical protein; Provisional
Probab=99.16 E-value=1.5e-09 Score=107.79 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=85.3
Q ss_pred CCCCChHHHHHHHHHHHHHc-------CCCCceEeCcEEEEEEEeCCeEEEEEcc-CcEEEcCEEEEcccCCCCCCCCCC
Q psy2343 43 PVYPNHSMMLDYLRSYAKKF-------DVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYPNY 114 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~-------~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~~~~~d~vvvAtG~~~~p~~P~~ 114 (396)
..|+++..+.+||++..+.+ ++.-.++.+++|++|++.+++|.|++.+ +..+.+|+||+|||+. .|..+.
T Consensus 94 ~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~-~p~~~~- 171 (534)
T PRK09897 94 RQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV-WPDEEE- 171 (534)
T ss_pred CccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC-CCCCCh-
Confidence 35899999999988877654 1112356788999999988889999865 4678999999999983 233221
Q ss_pred CCCcccceeecccCCCC--CCCCCCeEEEEcCCCcHHHHHHHHhcCC---------------------CcEEEEeccCce
Q psy2343 115 SGYFSGEILHSMDYKSP--DQIRNKRVLVVGAGNSGCDIAVDASHHS---------------------EKVYHSTRRGYH 171 (396)
Q Consensus 115 ~g~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sa~d~a~~l~~~~---------------------~~V~l~~r~~~~ 171 (396)
+. .+ .....|... ....+.+|+|+|.|.|++|++..|+... .++++++|++..
T Consensus 172 -~~-~~--yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 172 -AT-RT--YFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred -hh-cc--ccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence 10 11 111112111 1234789999999999999999987441 369999999853
No 87
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=106.38 Aligned_cols=250 Identities=18% Similarity=0.125 Sum_probs=140.0
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
|+|--.+++.+....+.++.|++ ++.|++|-. .++.+.-. ..||+|++|||.. .|+..+++| ...|
T Consensus 167 P~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~--------~it~~~L~-~e~Dav~l~~G~~-~~~~l~i~g~d~~g- 233 (457)
T COG0493 167 PDFKLPKDILDRRLELLERSGVE--FKLNVRVGR--------DITLEELL-KEYDAVFLATGAG-KPRPLDIPGEDAKG- 233 (457)
T ss_pred chhhccchHHHHHHHHHHHcCeE--EEEcceECC--------cCCHHHHH-HhhCEEEEecccc-CCCCCCCCCcCCCc-
Confidence 45555568899999999999966 888877631 23322222 3579999999985 788778888 3333
Q ss_pred eeecccCC--------------CCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHH
Q psy2343 122 ILHSMDYK--------------SPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWM 186 (396)
Q Consensus 122 ~~hs~~~~--------------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~ 186 (396)
+..+.+|. .....+||+|+|||+|.||+|++....+. +++|+.+.|...- ....+
T Consensus 234 v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~-----~~~~~----- 303 (457)
T COG0493 234 VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD-----DETNE----- 303 (457)
T ss_pred chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc-----ccCCc-----
Confidence 22222111 11233569999999999999999887776 5689888743311 00000
Q ss_pred HhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecC--CcceE---e---
Q psy2343 187 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKD--DIKNL---N--- 256 (396)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~--~i~~i---~--- 256 (396)
.|.+-.. ...+. . ...+.... ....-...+ ..|+|.-.. .+... +
T Consensus 304 --~~~~~~~-----~~~~~-a-~eeg~~~~----------------~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~ 358 (457)
T COG0493 304 --WPTWAAQ-----LEVRS-A-GEEGVERL----------------PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWG 358 (457)
T ss_pred --ccccchh-----hhhhh-h-hhcCCccc----------------ccCCceeEeecCCCcEeeeecccccccCcccccc
Confidence 0000000 00000 0 00000000 001111111 224444111 11110 0
Q ss_pred -CCeEEecCCc-EecCcEEEEccCCCCCCCCCC-cc-cccc-cCCccccccccccCCCCcEEEEecccCcCchhhHHHHH
Q psy2343 257 -GNIVHFVDDT-HIEVDTIIYATGYNRHFPFID-KE-KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQ 331 (396)
Q Consensus 257 -~~~v~~~dG~-~~~~D~VI~aTG~~~~~~~l~-~~-~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~q 331 (396)
...+.+...+ .+++|.|+.|+|+.++..... .. .+.. ..+.+.+......++.|++|+.||+..+...+..+..+
T Consensus 359 r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~e 438 (457)
T COG0493 359 RRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAE 438 (457)
T ss_pred cccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhh
Confidence 1112222222 378999999999998865421 11 2222 22444444443378899999999998866777788889
Q ss_pred HHHHHHHHh
Q psy2343 332 GQFIRSYIQ 340 (396)
Q Consensus 332 a~~~a~~l~ 340 (396)
+|-+|+.+.
T Consensus 439 Gr~aak~i~ 447 (457)
T COG0493 439 GREAAKAID 447 (457)
T ss_pred chHHHHhhh
Confidence 999888776
No 88
>KOG2755|consensus
Probab=98.93 E-value=4.5e-09 Score=91.52 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=61.6
Q ss_pred CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC-----CCCCCeEEEEcCCCcHHHHHHHH
Q psy2343 81 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDA 155 (396)
Q Consensus 81 ~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l 155 (396)
...-.+.+++|..+.|++|++|||. +|+.-. +| -...++--.+-.+.+ -.+.|+|+|+|.|.+|+|++.++
T Consensus 78 s~ehci~t~~g~~~ky~kKOG~tg~--kPklq~-E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yEl 153 (334)
T KOG2755|consen 78 SSEHCIHTQNGEKLKYFKLCLCTGY--KPKLQV-EG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYEL 153 (334)
T ss_pred cccceEEecCCceeeEEEEEEecCC--Ccceee-cC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHh
Confidence 4455888999999999999999999 887642 22 122344444444443 23789999999999999999999
Q ss_pred hcCCCcEEEEeccC
Q psy2343 156 SHHSEKVYHSTRRG 169 (396)
Q Consensus 156 ~~~~~~V~l~~r~~ 169 (396)
... +|+|....+
T Consensus 154 k~~--nv~w~ikd~ 165 (334)
T KOG2755|consen 154 KIL--NVTWKIKDE 165 (334)
T ss_pred hcc--eeEEEecch
Confidence 876 688887654
No 89
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.91 E-value=9e-09 Score=106.62 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=43.5
Q ss_pred EEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCC-------------CCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 94 KKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSP-------------DQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 94 ~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~-------------~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
..||+|+||||+. .|+.+++|| ... .++.+.++... ....|++|+|||||++|+|+|.....
T Consensus 496 ~gyDAV~IATGA~-kpr~L~IPGeda~-GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 496 LGFDHIAFCIGAG-QPKVLDIENFEAK-GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred cCCCEEEEeCCCC-CCCCCCCCCccCC-CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence 5699999999984 588888998 332 23333332111 01147899999999999999996543
No 90
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.88 E-value=1.5e-07 Score=91.45 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhc---------------------CCCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASH---------------------HSEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~---------------------~~~~V~l~~r~~~ 170 (396)
..++++|||.|+.|+|+|+.|++ ..++|+++-||+.
T Consensus 196 ~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp 252 (506)
T PTZ00188 196 NFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGF 252 (506)
T ss_pred CCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCH
Confidence 56799999999999999997542 2468999999983
No 91
>KOG1800|consensus
Probab=98.84 E-value=9.9e-08 Score=87.58 Aligned_cols=115 Identities=23% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
|+.|--+-+..-+...|++..+. ..-|.+|-+ .|++++- +-.||+||+|.|+. .++..+||| ...|
T Consensus 67 PDHpEvKnvintFt~~aE~~rfs--f~gNv~vG~--------dvsl~eL-~~~ydavvLaYGa~-~dR~L~IPGe~l~~- 133 (468)
T KOG1800|consen 67 PDHPEVKNVINTFTKTAEHERFS--FFGNVKVGR--------DVSLKEL-TDNYDAVVLAYGAD-GDRRLDIPGEELSG- 133 (468)
T ss_pred CCCcchhhHHHHHHHHhhccceE--EEecceecc--------cccHHHH-hhcccEEEEEecCC-CCcccCCCCccccc-
Confidence 44444445556666666664432 233444311 1222221 24799999999996 466778888 4333
Q ss_pred eeecccCCCC-----------CCCCCCeEEEEcCCCcHHHHHHHHhcC----------------------CCcEEEEecc
Q psy2343 122 ILHSMDYKSP-----------DQIRNKRVLVVGAGNSGCDIAVDASHH----------------------SEKVYHSTRR 168 (396)
Q Consensus 122 ~~hs~~~~~~-----------~~~~~k~VvVVG~G~sa~d~a~~l~~~----------------------~~~V~l~~r~ 168 (396)
++.+..+... .++.+.+|+|||.|+.|+|+|+.|... .++|+++.||
T Consensus 134 V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRR 213 (468)
T KOG1800|consen 134 VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRR 213 (468)
T ss_pred ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEecc
Confidence 3333322221 245689999999999999999988742 2579999998
Q ss_pred Cc
Q psy2343 169 GY 170 (396)
Q Consensus 169 ~~ 170 (396)
+.
T Consensus 214 gp 215 (468)
T KOG1800|consen 214 GP 215 (468)
T ss_pred Cc
Confidence 74
No 92
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.61 E-value=2.5e-07 Score=77.41 Aligned_cols=96 Identities=21% Similarity=0.375 Sum_probs=71.8
Q ss_pred ccccccCCCCCCCCCCceeeecCCCcccc-CCCC---C-------------CCCCCCCCChHHHHHHHHHHHHHcC--CC
Q psy2343 5 LGGVWNSQASCGRVYPSLHLISPKFNTQV-PDYP---M-------------PDNYPVYPNHSMMLDYLRSYAKKFD--VY 65 (396)
Q Consensus 5 iGG~W~~~~~~~~~y~~~~~~~~~~~~~~-~~~p---~-------------p~~~~~~p~~~~~~~Yl~~~~~~~~--l~ 65 (396)
.|+.|... -.+.+.+|+++..|.+ ++-| + ......|+++..+.+||+++.+..- +.
T Consensus 38 ~G~~~~~~-----~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~ 112 (156)
T PF13454_consen 38 AGGAYRPD-----QPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLP 112 (156)
T ss_pred ccccCCCC-----CChHHhhcccccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhc
Confidence 36788765 2677788888886655 3433 1 0112369999999999999998752 22
Q ss_pred Cc--e-EeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 66 NH--S-IFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 66 ~~--i-~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
.. | +.+.+|++|++.+++|.|.+.+|..+.||+||+|||+
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 21 2 3467999999988889999999999999999999997
No 93
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.18 E-value=5.6e-07 Score=66.14 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=31.4
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||+|.+|+|+|..+++.+.+|+++.|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 699999999999999999999999999999874
No 94
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.18 E-value=1.7e-06 Score=75.48 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=52.3
Q ss_pred HHHcCCCCceEeCcEEEEEEEeCCe-----EEEE---EccCcEEEcCEEEEcccCCCCCCCCCCCCC----cccceeecc
Q psy2343 59 AKKFDVYNHSIFNTEVINLEQYEDI-----WEVE---LSNGKKKKYDFIAVCNGAQRVARYPNYSGY----FSGEILHSM 126 (396)
Q Consensus 59 ~~~~~l~~~i~~~t~V~~v~~~~~~-----~~V~---~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~----~~g~~~hs~ 126 (396)
+++.++. ++++++|.+|+...+. +.+. ..++.++.||+||+|||. .|+.|.+||. +...+.++.
T Consensus 68 ~~~~~v~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~~~~~~~ 143 (201)
T PF07992_consen 68 LKNRGVE--IRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS--RPRTPNIPGEEVAYFLRGVDDAQ 143 (201)
T ss_dssp HHHHTHE--EEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE--EEEEESSTTTTTECBTTSEEHHH
T ss_pred cccceEE--EeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc--ccceeecCCCccccccccccccc
Confidence 3456655 6789999999887653 2332 234556999999999998 7888888872 112334444
Q ss_pred cCCCCCCCCCCeEEEEc
Q psy2343 127 DYKSPDQIRNKRVLVVG 143 (396)
Q Consensus 127 ~~~~~~~~~~k~VvVVG 143 (396)
.+...... .++|+|||
T Consensus 144 ~~~~~~~~-~~~v~VvG 159 (201)
T PF07992_consen 144 RFLELLES-PKRVAVVG 159 (201)
T ss_dssp HHHTHSST-TSEEEEES
T ss_pred cccccccc-cccccccc
Confidence 33333333 34999999
No 95
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.03 E-value=1.3e-05 Score=74.46 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+.+|..|++.+.+|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 69999999999999999999999999999764
No 96
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.00 E-value=2.5e-05 Score=74.56 Aligned_cols=109 Identities=17% Similarity=0.314 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
.++|||||||..|+.+|..|.+.- .+|+++.|++.+..+.. + .+...+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~pl-------------------------L----~eva~g~ 53 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL-------------------------L----YEVATGT 53 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchh-------------------------h----hhhhcCC
Confidence 579999999999999999999874 67999999986533211 0 0011111
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhccc-CCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID 287 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~ 287 (396)
... ..+...+...++ .+++.. ...|+.|+ ++.|++.++..+++|.+|+|+|.++++.-++
T Consensus 54 l~~--------------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~ 117 (405)
T COG1252 54 LSE--------------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIP 117 (405)
T ss_pred CCh--------------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCC
Confidence 100 011122333444 345664 35677775 5689999988899999999999999875444
No 97
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.93 E-value=4.9e-05 Score=74.45 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~ 171 (396)
..++|||||||..|+.+|..|.....+|+++.+++.+
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 4579999999999999999987655689999988743
No 98
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.79 E-value=0.00012 Score=71.11 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~ 169 (396)
+.++|+|||+|..|+.+|..|.+... +|+++.+.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 46789999999999999999998743 789998765
No 99
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.77 E-value=5.1e-05 Score=72.80 Aligned_cols=107 Identities=8% Similarity=0.102 Sum_probs=63.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
+|||||||..|+.+|..+.+. ..+|+++.+++....... +|..+.. ..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~------------~~~~~~g-----------------~~ 51 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM------------LPGMIAG-----------------HY 51 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch------------hhHHHhe-----------------eC
Confidence 589999999999999998643 467999998764321110 0100000 00
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID 287 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~ 287 (396)
.+. .+...+.+.+..-.+++ ...+.+++ ++.|.+.+|+++.+|.+|+|||.++..|-++
T Consensus 52 ------~~~--------~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~ 113 (364)
T TIGR03169 52 ------SLD--------EIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE 113 (364)
T ss_pred ------CHH--------HhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence 000 00000111111112332 33566665 4578899999999999999999999877655
No 100
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.74 E-value=5.5e-05 Score=74.64 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=29.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~ 170 (396)
++|+|||+|..|+.+|..|.+.. .+|+++.+++.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 48999999999999999998864 37999999874
No 101
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.67 E-value=0.0001 Score=69.13 Aligned_cols=138 Identities=11% Similarity=0.176 Sum_probs=78.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce----eecCC-----CCCCChhHHHHhhC---ccccChHHHHHHHH
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH----YYPKF-----IDGKPTPQWMLQLG---NKFSSKEETMAYIK 204 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~----~~p~~-----~~~~~~~~~~~~~p---~~~~~~~~~~~~~~ 204 (396)
..|+|||+|.+|+=+|..+++.+.+|.++.+.+.. .+.-- ....+.+.++.+.| ..++. .+.++..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~s--al~~ft~ 81 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKS--ALARFTP 81 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHH--HHHhCCH
Confidence 47999999999999999999999999999986531 11100 01122555665555 22221 0001111
Q ss_pred H-HHHHhcCCCCCCCCCCCCCC---CCc---ccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCc
Q psy2343 205 Q-VFKLAGFDGVDYGLKKPDHP---LDA---AHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVD 271 (396)
Q Consensus 205 ~-~~~~~~~~~~~~~~~~p~~~---~~~---~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D 271 (396)
+ ++.+ -+.+|+.--... +++ +-..+-+.+...++...|++ ...|.+++.. .|...+|+++.||
T Consensus 82 ~d~i~~----~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 82 EDFIDW----VEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred HHHHHH----HHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence 1 1111 112222111111 111 11122345556666666665 4578887644 4667788899999
Q ss_pred EEEEccCCC
Q psy2343 272 TIIYATGYN 280 (396)
Q Consensus 272 ~VI~aTG~~ 280 (396)
.+|+|||-.
T Consensus 158 ~lilAtGG~ 166 (408)
T COG2081 158 SLILATGGK 166 (408)
T ss_pred EEEEecCCc
Confidence 999999954
No 102
>KOG3851|consensus
Probab=97.61 E-value=0.00018 Score=65.11 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=53.7
Q ss_pred hhhcccCCCeEec--CCcceEeCC--eEEec---C-CcE--ecCcEEEEccCCCCC-CCCCCcccccccCCcccccccc-
Q psy2343 237 ILYHIGHGDILPK--DDIKNLNGN--IVHFV---D-DTH--IEVDTIIYATGYNRH-FPFIDKEKLEWKLGIPDLFIHI- 304 (396)
Q Consensus 237 ~~~~i~~g~i~~~--~~i~~i~~~--~v~~~---d-G~~--~~~D~VI~aTG~~~~-~~~l~~~~~~~~~~~~~l~~~~- 304 (396)
+.+.+++.+|++. .+..++..+ ..+|+ + |.. ++.+.+= .+---+ ..+|....+....|.+.+....
T Consensus 242 L~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLH--v~Ppms~pe~l~~s~~adktGfvdVD~~Tl 319 (446)
T KOG3851|consen 242 LEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLH--VTPPMSTPEVLANSDLADKTGFVDVDQSTL 319 (446)
T ss_pred HHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeee--ccCCCCChhhhhcCcccCcccceecChhhh
Confidence 3444455566653 344444332 23332 2 554 3444433 222212 2244433333344566665444
Q ss_pred ccCCCCcEEEEecccCcCc--hhhHHHHHHHHHHHHHhcccc
Q psy2343 305 APRNLDNIFFFGFVNAAAG--LGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 305 ~~~~~p~l~~iG~~~~~~~--~~~~ae~qa~~~a~~l~~~~~ 344 (396)
.+..+||+|.|||+....+ +...+..|+..+-+++...++
T Consensus 320 Qs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~ 361 (446)
T KOG3851|consen 320 QSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQ 361 (446)
T ss_pred ccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhc
Confidence 4556999999999976432 333445666666666655544
No 103
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.51 E-value=0.00014 Score=77.70 Aligned_cols=36 Identities=22% Similarity=0.023 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.||+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999999864
No 104
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.49 E-value=0.00055 Score=64.29 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~ 111 (396)
+.+.+.+-|..-++..++. |+.+++|.+|++++..|.|++.+|+++.||+||||||..+.|++
T Consensus 109 kA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 109 KASPIVDALLKELEALGVT--IRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKL 171 (408)
T ss_pred chHHHHHHHHHHHHHcCcE--EEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCC
Confidence 5789999999999999998 99999999999988899999999988999999999998766754
No 105
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.48 E-value=0.00027 Score=74.75 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~ 170 (396)
.++|||||+|..|+..|..|.+. ..+|+++.+.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence 36899999999999999999764 247999998864
No 106
>PRK06116 glutathione reductase; Validated
Probab=97.43 E-value=0.00068 Score=67.03 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=29.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|..+|..+++.+.+|.++.+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 6999999999999999999999999999975
No 107
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.41 E-value=0.00027 Score=74.93 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|+|||||.+|+.+|..|++.+.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 468999999999999999999999999999999865
No 108
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.40 E-value=0.0012 Score=59.68 Aligned_cols=36 Identities=31% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+..-+|+|||+|.+|+=+|..|++.+.+|.++.|.+
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345579999999999999999999999999999975
No 109
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.38 E-value=0.0009 Score=65.87 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~ 170 (396)
++|||||||..|+.+|..|.+. ..+|+++.+.+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 4899999999999999999876 467999999864
No 110
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.35 E-value=0.0011 Score=65.48 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=29.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|...|..+++.+++|.++.+.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 6999999999999999999999999999874
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.32 E-value=0.00075 Score=67.89 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
..+|+|||||..|+.+|..+++.+.+|+++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~ 243 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER 243 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 458999999999999999999999999999754
No 112
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.31 E-value=0.0021 Score=63.55 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...|+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 446899999999999999999999999999999975
No 113
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.31 E-value=0.00058 Score=71.75 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...||+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4578999999999999999999999999999999753
No 114
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.30 E-value=0.0027 Score=57.66 Aligned_cols=37 Identities=30% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++..-+|+|||+|.+|+=+|..|++.+.+|.++.+.+
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3344579999999999999999999999999999875
No 115
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.29 E-value=0.00099 Score=63.96 Aligned_cols=129 Identities=15% Similarity=0.202 Sum_probs=67.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 215 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (396)
.|+|||+|.+|.-+|..|++. +.+|.++.+.+. +.+...... |...+..... .....++...+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~~~tw~~----~~~~~~~~~~------~~~~~~v~~~W~~-- 67 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGGNHTWSF----FDSDLSDAQH------AWLADLVQTDWPG-- 67 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCCccccee----cccccchhhh------hhhhhhheEeCCC--
Confidence 489999999999999999986 788999988651 101000000 0000000000 0011111111111
Q ss_pred CCCCCCCCCC--CCcc-cCccCchhhhc----ccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCC
Q psy2343 216 DYGLKKPDHP--LDAA-HPIMNSQILYH----IGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNR 281 (396)
Q Consensus 216 ~~~~~~p~~~--~~~~-~~~~~~~~~~~----i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~ 281 (396)
+.+..+... .... ..+.+.++.+. +..+ |.....|.+++.++|+++||+++.+|.||.|.|.++
T Consensus 68 -~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 68 -YEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred -CEEECcchhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 100001000 0000 01112333333 3334 656667888888889999999999999999999664
No 116
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.28 E-value=0.0001 Score=70.08 Aligned_cols=30 Identities=40% Similarity=0.687 Sum_probs=26.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
+|+|||||..|+|.|..+++.+.+|.|++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence 589999999999999999999999999954
No 117
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.27 E-value=0.00036 Score=68.98 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhc--CCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~--~~~~V~l~~r~~ 169 (396)
-.+++|+|||+|.+|+.+|..|++ .+.+|+++.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 357899999999999999999986 578999999986
No 118
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.24 E-value=0.00059 Score=71.99 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=63.0
Q ss_pred EEEEcCCCcHHHHHHHHhcCC---CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343 139 VLVVGAGNSGCDIAVDASHHS---EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 215 (396)
Q Consensus 139 VvVVG~G~sa~d~a~~l~~~~---~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (396)
|||||+|..|+.+|..|.+.. .+|+++.+.+.....+. . ++..+. +...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~--~---------L~~~l~-----------------g~~~ 52 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI--L---------LSSVLQ-----------------GEAD 52 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc--c---------ccHHHC-----------------CCCC
Confidence 689999999999999987754 47999998864211100 0 000000 0000
Q ss_pred CCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343 216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFID 287 (396)
Q Consensus 216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~ 287 (396)
.-.+ .....++ +...+|++. ..|..++. ..|.+.+|+.+.+|.+|+|||.++..|-++
T Consensus 53 ~~~l-----------~~~~~~~---~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip 114 (785)
T TIGR02374 53 LDDI-----------TLNSKDW---YEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIP 114 (785)
T ss_pred HHHc-----------cCCCHHH---HHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence 0000 0001111 122245543 45777764 568889999999999999999987655443
No 119
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.23 E-value=0.00079 Score=66.32 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|..|+.+|..+++.+.+|+++.+.+
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 69999999999999999999999999999864
No 120
>PLN02661 Putative thiazole synthesis
Probab=97.22 E-value=0.0028 Score=59.51 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=36.3
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
....+.+..++..-+|+|||+|.+|+=+|..|++. +.+|+++.+..
T Consensus 80 ~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 80 TRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 33444455556667899999999999999999975 67899999864
No 121
>PRK07236 hypothetical protein; Provisional
Probab=97.21 E-value=0.0015 Score=63.22 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
...+|+|||||.+|+-+|..|++.+-+|+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357899999999999999999999999999999863
No 122
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.19 E-value=0.0012 Score=63.86 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVAR 110 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~ 110 (396)
....+.+-|...+++.+++ ++++++|.+|.+++++ |.|.++++.++.+|+||||||..+.|.
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPK 169 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGG
T ss_pred cHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccc
Confidence 4678999999999999988 9999999999998665 999997777899999999999866554
No 123
>PRK06847 hypothetical protein; Provisional
Probab=97.18 E-value=0.003 Score=60.74 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p 109 (396)
.++.++.++|.+.+...++. ++++++|++++.+++.+.|++.+|+++.+|.||.|+|.++..
T Consensus 104 i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 104 IMRPALARILADAARAAGAD--VRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred CcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 46789999999999988876 999999999998878899998888889999999999996633
No 124
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.17 E-value=0.0043 Score=51.74 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=26.2
Q ss_pred EEEcCCCcHHHHHHHHhcCC-----CcEEEEeccCc
Q psy2343 140 LVVGAGNSGCDIAVDASHHS-----EKVYHSTRRGY 170 (396)
Q Consensus 140 vVVG~G~sa~d~a~~l~~~~-----~~V~l~~r~~~ 170 (396)
+|||+|.+|+=++..|++.. .+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999998873 46899988654
No 125
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0017 Score=63.89 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~ 169 (396)
..+|+|||+|.||+=+|..|.+.+-. +.++.++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 35799999999999999999998766 89998874
No 126
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.13 E-value=0.0017 Score=64.20 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=29.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|...|..+++.+.+|.++.+.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 6999999999999999999999999999975
No 127
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.08 E-value=0.0016 Score=65.44 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
...+|+|||||..|+..|..+++.+.+|+++..
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 356899999999999999999999999999864
No 128
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.004 Score=53.74 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 128 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 128 ~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.+..++....|+|||+|.||.-.|.+|++.+-+|.++.|+-
T Consensus 22 ~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 22 FEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HHHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 334445666789999999999999999999999999999974
No 129
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.05 E-value=0.0028 Score=60.50 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=52.5
Q ss_pred CCC---ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCC
Q psy2343 44 VYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 44 ~~p---~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~ 111 (396)
-|| +...+.+=|...+++.++. |+++++|++| ++++|.|.+.++ .++.+|+||||||..+.|+.
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence 467 5789999999999999998 9999999999 345698887543 45899999999999655443
No 130
>PRK06370 mercuric reductase; Validated
Probab=97.05 E-value=0.003 Score=62.73 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=30.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
-.|+|||+|..|...|..+++.+.+|.++.+.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 47999999999999999999999999999975
No 131
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.05 E-value=0.0018 Score=64.41 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||+|..|...|..+++.+.+|.++.+.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 379999999999999999999999999999864
No 132
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.01 E-value=0.0011 Score=58.02 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||||.+|.--+..|.+.+.+|+++...
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 367999999999999999999999999999999754
No 133
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.99 E-value=0.0027 Score=63.14 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=29.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
-+|+|||+|..|..+|..+++.+++|.++.+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 36999999999999999999999999999974
No 134
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.97 E-value=0.0048 Score=61.23 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|...|..+++.+.+|.++.+.
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~ 32 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG 32 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999975
No 135
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.97 E-value=0.00062 Score=71.63 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 468999999999999999999999999999999753
No 136
>KOG1399|consensus
Probab=96.96 E-value=0.0089 Score=58.40 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC----ceeec
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG----YHYYP 174 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~----~~~~p 174 (396)
.++|+|||+|.+|.-.|.+|.+.+.+|+++.|++ .|..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 5799999999999999999999999999999975 45544
No 137
>PRK10262 thioredoxin reductase; Provisional
Probab=96.96 E-value=0.0024 Score=60.12 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
+.++|+|||+|..|+..|..+++.+.+++++..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~ 37 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG 37 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence 467899999999999999999998888888864
No 138
>KOG2755|consensus
Probab=96.95 E-value=0.0021 Score=56.84 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=26.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
+.+|||||..|+-+|..|+.. ..+|.+++-++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 368999999999999999986 56788887765
No 139
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.95 E-value=0.00015 Score=63.08 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||..|+.+|..|++...+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 69999999999999999999888999996654
No 140
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.95 E-value=0.00068 Score=67.14 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.-.+|+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 3467899999999999999999999999999999875
No 141
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.94 E-value=0.0013 Score=64.48 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCcHHHHHHHHh-cCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~-~~~~~V~l~~r~~ 169 (396)
+.++|+|||+|.+|+.+|..|+ +.+.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999865 4578899999986
No 142
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.93 E-value=0.00085 Score=66.24 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4568899999999999999999999999999999864
No 143
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.93 E-value=0.0055 Score=53.29 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=23.9
Q ss_pred EEEcCCCcHHHHHHHHhcCCCc-EEEEeccC
Q psy2343 140 LVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 169 (396)
Q Consensus 140 vVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~ 169 (396)
+|||+|.+|+-+|..|.+.+.+ |.++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999998877 99999874
No 144
>PRK14694 putative mercuric reductase; Provisional
Probab=96.93 E-value=0.0097 Score=59.13 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=29.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|.-.|..+++.+.+|.++.+.
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 6999999999999999999999999999975
No 145
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0024 Score=61.53 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=27.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CC-cEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SE-KVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~-~V~l~~r~~ 169 (396)
++|+|||+|.||+.+|.+|.+. .. .|.++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 5899999999999999999885 22 388888775
No 146
>PRK06847 hypothetical protein; Provisional
Probab=96.90 E-value=0.0051 Score=59.13 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.|++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998764
No 147
>PLN02546 glutathione reductase
Probab=96.90 E-value=0.0047 Score=62.45 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=28.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
.|+|||+|.-|...|..+++.+++|.++.+
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 599999999999999999999999999985
No 148
>PRK06753 hypothetical protein; Provisional
Probab=96.89 E-value=0.0055 Score=58.87 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=31.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999874
No 149
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.85 E-value=0.0022 Score=55.91 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||||..|.-.+..|.+.+.+|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999988899999753
No 150
>PLN02463 lycopene beta cyclase
Probab=96.84 E-value=0.0032 Score=61.93 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||+|.+|.-+|..|++.+.+|.++.+++.
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 799999999999999999998999999998653
No 151
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.84 E-value=0.0022 Score=68.40 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|||||..|+.+|..|++.+.+|+++.+++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 57899999999999999999999999999999865
No 152
>KOG3851|consensus
Probab=96.83 E-value=0.0011 Score=60.16 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343 250 DDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID 287 (396)
Q Consensus 250 ~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~ 287 (396)
..|++++ .+.|++.+|++|..|.+|+|+|.+.++.-+.
T Consensus 112 ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik 151 (446)
T KOG3851|consen 112 EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK 151 (446)
T ss_pred HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence 3455664 4789999999999999999999999887554
No 153
>PRK12831 putative oxidoreductase; Provisional
Probab=96.82 E-value=0.0014 Score=64.90 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.-.+++|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4578999999999999999999999999999998754
No 154
>PTZ00058 glutathione reductase; Provisional
Probab=96.78 E-value=0.01 Score=60.06 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|.-+|..+++.+.+|.++.+.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 6999999999999999999999999999975
No 155
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.78 E-value=0.0039 Score=59.12 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+...+.+.|...+++.|+. ++.+++|++|..++++|+ |.+++|+ +.+|.||+|+|.++
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccccchhhhhHHHHHHhhhh--ccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 35689999999999999987 999999999999999999 9999998 99999999999854
No 156
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.76 E-value=0.0018 Score=64.66 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.+++|+|||+|.+|+++|..|.+.+.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 568899999999999999999999999999998764
No 157
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.74 E-value=0.0015 Score=70.41 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 57899999999999999999999999999999864
No 158
>PRK06834 hypothetical protein; Provisional
Probab=96.72 E-value=0.0098 Score=59.38 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.++++++. |+++++|++++.+++.+.|++.+|.++.+|+||.|.|.++
T Consensus 98 ~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 98 WQNHIERILAEWVGELGVP--IYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred cHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 4678888999999888876 9999999999998888889887787899999999999966
No 159
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.70 E-value=0.0029 Score=60.39 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+++|+|||+|.+|+++|..|++.+.+|+++.+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 578999999999999999999999999999998753
No 160
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.66 E-value=0.0062 Score=59.47 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~ 170 (396)
+|+|||||.+|+=+|..|++.+. +|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 79999999999999999999874 8999999864
No 161
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.66 E-value=0.01 Score=57.68 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 110 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~ 110 (396)
...++.+.|...+++.++. ++++++|++++++++.|.|++ ++.++.+|+||+|||.++.|.
T Consensus 103 ~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 103 SAADVLDALLNELKELGVE--ILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSYPQ 163 (400)
T ss_pred CHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence 4588999999999999887 999999999988777888887 455689999999999876543
No 162
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.62 E-value=0.0098 Score=60.05 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||||..|+++|..+++.+.+|.++.+.+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 69999999999999999999999999999873
No 163
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.022 Score=52.89 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCc-EEEEec
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEK-VYHSTR 167 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r 167 (396)
+|+|||+|..|+-.|..+++...+ +.++..
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~ 35 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEG 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 699999999999999999998766 555554
No 164
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.61 E-value=0.0059 Score=58.95 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
......+...|...+.. |+. ++++++|++|+.+++.|.|++.+|..+.+|.||+|+|.+.
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred ccChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 44567888888888887 876 8999999999988788999998887789999999999865
No 165
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.55 E-value=0.0073 Score=58.02 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..|+++|||||.+|...|.+|++.+-+|+++.+.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 35799999999999999999999999999999987
No 166
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.54 E-value=0.0047 Score=54.30 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
..++++|+|||||..|..=+..|.+.+.+|+++...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 346899999999999999888999999999999743
No 167
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.53 E-value=0.002 Score=63.98 Aligned_cols=36 Identities=31% Similarity=0.282 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.+++|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 368999999999999999999999998999998875
No 168
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.52 E-value=0.0084 Score=57.29 Aligned_cols=58 Identities=22% Similarity=0.413 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
-.++..-++++.+.+|++ ++|+|+|+.|...++ ...|.+++|.++.+|+||+|.|+.+
T Consensus 172 l~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 378999999999999988 999999999998754 4678888898899999999999854
No 169
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.50 E-value=0.005 Score=61.82 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=27.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|||+|||+|.||.=.|..|.+.+-+++++.+++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 799999999999999999999999999999975
No 170
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.39 E-value=0.0027 Score=65.51 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 58999999999999999999999999999999876
No 171
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.32 E-value=0.024 Score=56.22 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|.-.|..+++.+++|.++.+.
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6999999999999999999999999999873
No 172
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.31 E-value=0.016 Score=55.97 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||+|.+|.-+|..|++.+.+|.++.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 489999999999999999998899999998753
No 173
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.30 E-value=0.041 Score=54.59 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCC--CCC-----Ccc
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN--YSG-----YFS 119 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~--~~g-----~~~ 119 (396)
.++.+++.+.++..+++ ++++++|++|+.++++..+.+.+| .++.+|.||+|+|. .|+... +.+ ...
T Consensus 211 ~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~--~p~~~~l~~~~~gl~~~~~ 286 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVK--ILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR--KPNTEGLGLENLGVELDER 286 (461)
T ss_pred HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC--cccCCCCCcHhhCceECCC
Confidence 56778888888888887 999999999988777777776666 46899999999999 777652 222 112
Q ss_pred cceeecccCCCCCCCCCCeEEEEcCCCc
Q psy2343 120 GEILHSMDYKSPDQIRNKRVLVVGAGNS 147 (396)
Q Consensus 120 g~~~hs~~~~~~~~~~~k~VvVVG~G~s 147 (396)
|.+.-. ++. +-..+.|-++|....
T Consensus 287 g~i~vd-~~l---~t~~~~IyaiGD~~~ 310 (461)
T TIGR01350 287 GRIVVD-EYM---RTNVPGIYAIGDVIG 310 (461)
T ss_pred CcEeeC-CCc---ccCCCCEEEeeecCC
Confidence 322221 111 113467999997654
No 174
>PRK05868 hypothetical protein; Validated
Probab=96.29 E-value=0.019 Score=55.32 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=31.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
++|+|||+|..|+-+|..|++.+.+|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999864
No 175
>KOG2311|consensus
Probab=96.22 E-value=0.032 Score=53.67 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=28.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||||..|||.|...++.+.+.++++.+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 6999999999999999999999998888875
No 176
>PRK09897 hypothetical protein; Provisional
Probab=96.21 E-value=0.013 Score=58.71 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~ 169 (396)
++|+|||+|.+|+=+|..|++... +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 589999999999999999987543 799999864
No 177
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.20 E-value=0.03 Score=54.37 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=25.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||++|+=+|..+++.+.+|.++.|.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~ 33 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK 33 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 59999999999999999999999999999975
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.18 E-value=0.012 Score=59.70 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=29.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||||..|+..|..+++.+.+|+++.+..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 379999999999999999999999999998753
No 179
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.17 E-value=0.0046 Score=63.98 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.+|+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 357899999999999999999999999999999865
No 180
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.09 E-value=0.022 Score=55.36 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.+...++. ++++++|++++.+++.+.|++.+|.++.+|.||.|+|.++
T Consensus 108 i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 108 VENRVLINALRKRAEALGID--LREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred eEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 46789999999999888876 8999999999988888999988888899999999999954
No 181
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.036 Score=54.34 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||||..|+|.|...++.+.++.+++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 379999999999999999999999998888753
No 182
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.08 E-value=0.01 Score=57.14 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHH--hcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDA--SHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l--~~~~~~V~l~~r~~~ 170 (396)
.|+|||+|.+|.-+|..| ++.+.+|.++.+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 489999999999999999 667889999987653
No 183
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.03 E-value=0.0057 Score=47.10 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++|++|+|||+|..|..-+..|.+.+.+|+++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 467999999999999999999999999999999876
No 184
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.98 E-value=0.026 Score=54.64 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+-|.+.+++.++. ++++++|++++.+++.++|++++|+++.+|.||.|+|.++
T Consensus 110 v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 110 VENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred EEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 35678888888888888876 8999999999988888999888888899999999999965
No 185
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.97 E-value=0.0043 Score=64.29 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+++|+|||+|.+|+-.|..|++.+.+|+++.+.+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 368999999999999999999999999999999864
No 186
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.97 E-value=0.023 Score=57.42 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=29.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|..|+++|..+++.+.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 59999999999999999999999999999864
No 187
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.95 E-value=0.0065 Score=60.57 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.+++|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 357899999999999999999999998999998865
No 188
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.94 E-value=0.026 Score=47.52 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCCc-HHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+.||+|+|||+|.+ |.-+|..|.+.+.+|+++.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 578999999999985 777999998887789998875
No 189
>PRK07588 hypothetical protein; Provisional
Probab=95.89 E-value=0.022 Score=55.17 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=31.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||||.+|+=+|..|++.+.+|+++.|.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998864
No 190
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.89 E-value=0.056 Score=53.79 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.-.+++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3467899999999999999999999999999999875
No 191
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.88 E-value=0.019 Score=55.48 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcE-EEcCEEEEcccCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKK-KKYDFIAVCNGAQRVA 109 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~-~~~d~vvvAtG~~~~p 109 (396)
..++...|...++..|.. ++||++|+.|++.++ .+.+.+.+|++ ++++.||+|.|.++.+
T Consensus 152 ~~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 152 PGELTRALAEEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 355666666777777887 999999999999866 68888888876 8999999999997633
No 192
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.88 E-value=0.025 Score=54.28 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p 109 (396)
+.....+...+.+.+.+.++. ++++++|+++..+++.|.|+++++ ++.+|.||+|+|.+...
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~ 206 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAE--LLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKD 206 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence 345567777777778788876 888999999998877899988877 58999999999996543
No 193
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.88 E-value=0.023 Score=56.56 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHH----cCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKK----FDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~----~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++ .|..-.|+++++|++|++. ++.|.|++.+|. +.+|+||+|+|.++
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~-i~A~~VVvaAG~~S 273 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYS 273 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCE-EEeCEEEECcChhH
Confidence 456777777777777 6632238899999999987 667999998774 89999999999876
No 194
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.87 E-value=0.034 Score=53.61 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~ 111 (396)
+++..++...+++.++. +.++++|.+++.+++.+.|++.+|+++.+|.||+|+|. .|+.
T Consensus 183 ~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~--~p~~ 241 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL--RPNT 241 (377)
T ss_pred HHHHHHHHHHHHhCCCE--EEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC--Ccch
Confidence 46778888888888987 88999999999877778888888888999999999998 6653
No 195
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.85 E-value=0.013 Score=51.26 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|||||||..|.-=|..+++.+.+|+++..+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 468999999999999999999999999999999754
No 196
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.83 E-value=0.037 Score=50.90 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-CcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.+.|.+.+.+.++. ++++++|+++..+++.+.+.+.+ +.++++|+||+|+|.++
T Consensus 88 i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 88 IDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred EEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 46789999999999998877 89999999998887777776654 35689999999999864
No 197
>PLN02697 lycopene epsilon cyclase
Probab=95.81 E-value=0.014 Score=58.53 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=29.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||+|.+|+-+|..+++.+.+|.++.+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 379999999999999999999998999997653
No 198
>PRK07190 hypothetical protein; Provisional
Probab=95.80 E-value=0.037 Score=55.24 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
+...+.+.|.+.++..++. ++++++|++++.+++++.+++.+|+++.+++||.|+|.++
T Consensus 107 ~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 107 GQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred CHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4667888888888888887 9999999999998778888887887899999999999966
No 199
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.76 E-value=0.053 Score=51.07 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
+.....+...|.+.+...|.. ++++++|+.++..++.| .|.+.+| ++.+|.||+|+|.+..
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVE--IIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCE--EEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 446688888998999988887 89999999999876655 4666666 5899999999998653
No 200
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.76 E-value=0.041 Score=53.36 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|...++..|+. ++++++|++++..++.|.|.+.++ ++.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGE--IRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 4578888888888888876 899999999998777888888777 589999999999864
No 201
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.75 E-value=0.038 Score=53.18 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.....+.+.|.+.++..++. ++++++|++|+.+++.|.|++.++ ++.+|.||+|+|.+.
T Consensus 142 i~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGAT--VRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence 35568888888888888886 888999999998877888888766 589999999999864
No 202
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.73 E-value=0.032 Score=58.05 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
+.....+.+.|.+.+.. ++. ++++++|++++..++.|.|.+.++..+.+|.||+|+|.++
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLT--IHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 34556778888777777 776 8899999999988888999888887678999999999965
No 203
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.67 E-value=0.062 Score=52.38 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=23.0
Q ss_pred EEEEcCCCcHHHHH-HHHh----cCCCcEEEEeccC
Q psy2343 139 VLVVGAGNSGCDIA-VDAS----HHSEKVYHSTRRG 169 (396)
Q Consensus 139 VvVVG~G~sa~d~a-~~l~----~~~~~V~l~~r~~ 169 (396)
=+|++.|..|+|.+ ..+. +.+.+|+++.+.+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~p 253 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLP 253 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCC
Confidence 47889999999998 4443 3478899886654
No 204
>KOG1336|consensus
Probab=95.62 E-value=0.044 Score=52.83 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=27.6
Q ss_pred cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCC
Q psy2343 249 KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRH 282 (396)
Q Consensus 249 ~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~ 282 (396)
.+.|+.++ .+.|++.+|++++.|.+|+|||..+.
T Consensus 147 ~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 147 GTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred cceeEEeeccccEEEeCCCceeecceEEEeecCccc
Confidence 44566554 67899999999999999999999443
No 205
>KOG2495|consensus
Probab=95.61 E-value=0.04 Score=52.35 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceee
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYY 173 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~ 173 (396)
..+.|+|||+|+|-.|+-++..|-..--+|+++..+.++.+
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlF 92 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLF 92 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEE
Confidence 45678999999999999999998877778999998876543
No 206
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.52 E-value=0.048 Score=53.05 Aligned_cols=59 Identities=17% Similarity=0.337 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
++..+.+-|.+.+...++. ++++++|++++.+++.|.|++.+|+++.+|.||.|.|.++
T Consensus 110 ~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 110 ENRVVQDALLERLHDSDIG--LLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred EhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 4567777777777776765 8899999999988888999988888899999999999966
No 207
>PLN02463 lycopene beta cyclase
Probab=95.51 E-value=0.053 Score=53.38 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.++|.+.+...++. + .+++|++|+..++.+.|++++|.++.+|.||.|+|..+
T Consensus 111 V~R~~L~~~Ll~~~~~~GV~--~-~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 111 VNRKKLKSKMLERCIANGVQ--F-HQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred EEHHHHHHHHHHHHhhcCCE--E-EeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 46889999999999888875 4 36799999988888999999998899999999999954
No 208
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.50 E-value=0.061 Score=53.36 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
+++.+.+++.++..++. ++++++|++|+.+++.+.+.+.++ +++.+|.||+|+|. .|+...
T Consensus 213 ~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~--~p~~~~ 276 (462)
T PRK06416 213 KEISKLAERALKKRGIK--IKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR--RPNTEN 276 (462)
T ss_pred HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC--ccCCCC
Confidence 57888888888888987 999999999998766777776655 56899999999999 777653
No 209
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.49 E-value=0.058 Score=52.96 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNY 114 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~ 114 (396)
-+++.+++....++.++. ++++++|+.++..++...++++++. ++++|.|++|+|. +|+...+
T Consensus 213 D~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR--~Pn~~~L 277 (454)
T COG1249 213 DPEISKELTKQLEKGGVK--ILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR--KPNTDGL 277 (454)
T ss_pred CHHHHHHHHHHHHhCCeE--EEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC--ccCCCCC
Confidence 478999999999997776 8999999999987665777777765 6889999999999 8888743
No 210
>PRK06834 hypothetical protein; Provisional
Probab=95.47 E-value=0.053 Score=54.15 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+=+|..|++.+-+|+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5799999999999999999999999999999763
No 211
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.46 E-value=0.047 Score=52.60 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.+-|.+.+... ++. ++++++|+++..+++.++|++++|.++.+|.||.|.|.++
T Consensus 102 i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 102 VELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred EEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 45788999999988874 776 8889999999988888999988888899999999999865
No 212
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.42 E-value=0.02 Score=55.64 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|..|+=+|..|++.+-+|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999876
No 213
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.39 E-value=0.095 Score=50.71 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc------C--cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------G--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~------g--~~~~~d~vvvAtG~~~ 107 (396)
..++.+.++|.+.+...|+. ++ .++|+++..+++.+.|++.+ + .++.+|.||.|+|.++
T Consensus 89 ~~r~~fd~~L~~~a~~~G~~--v~-~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 89 VRREVFDSYLRERAQKAGAE--LI-HGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred eeHHHHHHHHHHHHHhCCCE--EE-eeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 67899999999999998876 64 45799998888888887753 2 3589999999999865
No 214
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.38 E-value=0.054 Score=52.36 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.++.. ++. ++++++|++++.+++.|.|++++++++++|.||.|.|.++
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVT--LRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 35678888888887776 665 8889999999888788999988888899999999999965
No 215
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.38 E-value=0.072 Score=52.84 Aligned_cols=60 Identities=28% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+.+++.++. ++++++|++++.+++.+.+++.+|+++.+|.||+|+|. .|+..
T Consensus 216 ~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGVT--IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR--TGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCCE--EEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC--Ccccc
Confidence 57788888888888887 88999999998876778888777878999999999998 77754
No 216
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.37 E-value=0.097 Score=54.01 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=29.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|.-|...|..+++.+.+|.++.+.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6999999999999999999999999999964
No 217
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.36 E-value=0.018 Score=47.98 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEe
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 166 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~ 166 (396)
+++|++|+|||||..|...+..|.+.+.+|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5689999999999999999999999989999985
No 218
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.36 E-value=0.07 Score=52.03 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.....+.+.|...+++.|+. |+++++|++|+.+++.+ .|+++++ ++.+|.||+|+|.++
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 34568888888888888887 88999999998876665 4666555 588999999999865
No 219
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.35 E-value=0.035 Score=54.20 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
.++.++.+.|...+.. ..++++++|++|+.++++|+|+.++|.++++|.||.|.|.++.
T Consensus 102 i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLPE----GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4567788877766532 2378999999999888889999988888999999999999763
No 220
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.33 E-value=0.066 Score=51.73 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.+.+++.. .+++++|++++.+++.|.|++++++++.+|.||.|.|.++
T Consensus 108 i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNI--TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 45678888888888877533 4789999999988888999998888899999999999965
No 221
>PRK13984 putative oxidoreductase; Provisional
Probab=95.30 E-value=0.013 Score=60.15 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.+|+|+|||+|..|...|..|.+.+.+|+++.+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 368899999999999999999999999999998765
No 222
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.30 E-value=0.074 Score=51.83 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-----cEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-----~~~~~d~vvvAtG~~~ 107 (396)
...+...|...+++.|+. ++++++|++++..++.|.+.+.++ .++.+|.||+|+|.++
T Consensus 196 ~~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQ--FRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 456777778888888987 889999999998777888766443 2589999999999864
No 223
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.29 E-value=0.024 Score=55.00 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~ 170 (396)
+|+|||+|.+|+=+|..|++.+ -+|+++.+++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 5999999999999999999974 78999999863
No 224
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.29 E-value=0.058 Score=51.90 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.+-|.+.+...+ +. ++++++|++++..++.+.|++++|+++.+|.||.|.|.++
T Consensus 103 i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 103 VENRVLQQALWERLQEYPNVT--LLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred EEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 467788888888888776 65 8999999999988888999888888899999999999965
No 225
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.28 E-value=0.027 Score=55.33 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+=+|..|++.+.+|.++.|.+
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 79999999999999999999999999999875
No 226
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.28 E-value=0.037 Score=53.53 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+|+|||||.+|+=+|..|++.+-+|+++.+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999997
No 227
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.27 E-value=0.014 Score=59.56 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.-.|++|+|||+|..|+-+|..|++.+.+|+++.+.+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3468999999999999999999999888999998764
No 228
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.25 E-value=0.11 Score=50.35 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccC--cEEEcCEEEEcccCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNG--KKKKYDFIAVCNGAQ 106 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g--~~~~~d~vvvAtG~~ 106 (396)
.+..+.+-|.+.+++.|.. +..+++|++++.++++++ |.++++ .++.+|.||+|||.+
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~--il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGV--MLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred cHHHHHHHHHHHHHHCCCE--EEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 3677777788888898876 888899999998766555 555665 368999999999995
No 229
>PRK07588 hypothetical protein; Provisional
Probab=95.21 E-value=0.062 Score=52.01 Aligned_cols=60 Identities=13% Similarity=0.271 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
.++.++.+.|.+.+.. ++. |+++++|++++.+++.++|++++|+++.+|.||.|.|.++.
T Consensus 100 i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 100 LPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 3567777777665433 444 89999999999888889999999988899999999999663
No 230
>PRK06184 hypothetical protein; Provisional
Probab=95.14 E-value=0.076 Score=53.29 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE---ccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~---~~g~~~~~d~vvvAtG~~~ 107 (396)
++..+.+-|.+.+.+.++. |+++++|++++.+++.+++++ .+++++++|+||.|+|.++
T Consensus 107 ~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 107 PQWRTERILRERLAELGHR--VEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred CHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 4567778888888888876 999999999998877787776 4556789999999999976
No 231
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.12 E-value=0.089 Score=51.65 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+.++.++|.+.+++.|+. ++.+++|+++..+++.+.+...++.++.+|.||+|+|.++
T Consensus 106 ~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 106 LRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred EHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 5788999999999999987 8899999999877666654445666789999999999843
No 232
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.11 E-value=0.073 Score=52.80 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
.+...+.+-|.+.+++.|+. |+.+++|+.|+. ++.|.|++.+|. +.+|.||+|||.++.
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~~~~~v~t~~g~-v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVE--IHENTPMTGLEE-GQPAVVRTPDGQ-VTADKVVLALNAWMA 238 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-CCceEEEeCCcE-EECCEEEEccccccc
Confidence 35677888888888899987 889999999986 456888887774 899999999998754
No 233
>PLN02507 glutathione reductase
Probab=95.11 E-value=0.1 Score=52.22 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.+++.+++.+..++.+++ ++++++|++++.++++..|.+.+|+++.+|.|++|+|. .|+..
T Consensus 243 d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~ 303 (499)
T PLN02507 243 DDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR--APNTK 303 (499)
T ss_pred CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC--CCCCC
Confidence 467888888888888987 99999999998776677787777878999999999999 77765
No 234
>PRK08244 hypothetical protein; Provisional
Probab=95.08 E-value=0.1 Score=52.26 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC-cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG-KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g-~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.++..++. ++++++|++++.+++..+|++. +| +++++|+||.|.|..+
T Consensus 97 i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 97 LPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred ecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 35678889999999888876 9999999999988777777664 35 4689999999999966
No 235
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.04 E-value=0.082 Score=52.78 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g~--~~~~d~vvvAtG~~~ 107 (396)
....+.+-|...+++.+ +. |+++++|++++.. ++.|.|++.+ |+ ++.+++||+|+|.++
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 34578888888888876 66 8999999999986 4459887643 53 589999999999976
No 236
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.98 E-value=0.091 Score=52.37 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEc---cC--cEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS---NG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~---~g--~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.++..|+. |+++++|++++++ ++.|.|++. ++ .++.+|+||+|+|.++
T Consensus 176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 4577888888888888877 9999999999986 457988653 23 2589999999999865
No 237
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.08 Score=48.61 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEecc
Q psy2343 132 DQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+++||+|+|||.|. .|-=+|..|...+..|++++|+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367899999999998 8999999998876699999874
No 238
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.97 E-value=0.11 Score=51.54 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.++++...+..++. ++++++|++|+.+++...|...+|+++.+|.|++|+|. .|+..
T Consensus 217 d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~--~pn~~ 277 (466)
T PRK07845 217 DADAAEVLEEVFARRGMT--VLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS--VPNTA 277 (466)
T ss_pred CHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC--CcCCC
Confidence 357788888888888987 88999999998776677777778888999999999999 77765
No 239
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.91 E-value=0.42 Score=47.60 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEcCEEEEcccCCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~--g--~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
.++.+.+.+..++.+++ ++.+++|++|+.+++...|...+ | .++.+|.|++|+|. .|+.+.
T Consensus 224 ~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~--~p~~~~ 288 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR--VPNTDG 288 (475)
T ss_pred HHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC--ccCCCC
Confidence 57778888888888887 89999999998876666666543 3 35899999999998 887663
No 240
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.85 E-value=0.098 Score=52.08 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEe-CCeEEEEE---ccCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQY-EDIWEVEL---SNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~-~~~~~V~~---~~g~--~~~~d~vvvAtG~~~ 107 (396)
....+.+-|...+.+ -++. ++++++|+++++. ++.|+|+. .++. ++.+|+||+|.|.++
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 345566555555543 3665 8999999999987 77899873 3442 589999999999976
No 241
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.80 E-value=0.11 Score=50.21 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+..+.+.|.+.++..+ +. ++ +++|++++.+++.+.|++.+|.++.+|.||.|+|.++
T Consensus 109 ~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 109 ESSLIERALWAALRFQPNLT--WF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred EhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 46788888888888776 54 55 9999999887788999998887899999999999965
No 242
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.75 E-value=0.094 Score=50.79 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p 109 (396)
.++.++.+.|.+.+...+ +. ++++++|++++.+++.+.|++.+|+++.+|.||.|.|.++..
T Consensus 106 i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 106 IHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 367888888888887664 55 889999999998777888888888889999999999996643
No 243
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.75 E-value=0.031 Score=39.35 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=26.7
Q ss_pred EEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 141 VVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 141 VVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999986
No 244
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.74 E-value=0.03 Score=54.14 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=32.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~ 171 (396)
++|+|||||..|+++|..|++.+.+|+++.+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987643
No 245
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.73 E-value=0.076 Score=51.50 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
+..-+...++..+. .|+++++|++|+.++++++|++.+|+++.||+||+|+....
T Consensus 211 ~~~~~~~~~~~~g~--~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 211 LSLALALAAEELGG--EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp THHHHHHHHHHHGG--GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred hhHHHHHHHhhcCc--eeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 33344455555554 49999999999999999999999998999999999999843
No 246
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.66 E-value=0.11 Score=47.47 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++||+|+|||.|. .|.-+|..|...+..|++++++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 57899999999988 99999999998888999998753
No 247
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=94.66 E-value=0.097 Score=51.84 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
-+....+..+++++- ..|+++++|++|+..+++|+|++++|+++.||+||+|+-..
T Consensus 223 G~~~l~~~l~~~l~~-~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 223 GLETLPEEIEKRLKL-TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred hHHHHHHHHHHHhcc-CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 344555555555541 34999999999999888899998888778999999998863
No 248
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.61 E-value=0.12 Score=49.97 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+..+.+.|.+.+... ++. ++++++|+++...++.|.|+++++..+.+|.||.|.|.++
T Consensus 110 ~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 110 ELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred EhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4566777777776654 555 8899999999888888999998887899999999999965
No 249
>KOG2820|consensus
Probab=94.60 E-value=0.14 Score=47.37 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=60.8
Q ss_pred CCCCCCCCC-------CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEccc
Q psy2343 35 DYPMPDNYP-------VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNG 104 (396)
Q Consensus 35 ~~p~p~~~~-------~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG 104 (396)
-+|+|+++. ++.....-+.-++.++.+.|.. ++.+.+|+.++.. +....|.|.+|..+.++.+|+++|
T Consensus 132 ~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~G 209 (399)
T KOG2820|consen 132 NIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVG 209 (399)
T ss_pred CccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEec
Confidence 455665543 4456788999999999999987 8999999998875 445678888888899999999999
Q ss_pred CCCCCCCCC
Q psy2343 105 AQRVARYPN 113 (396)
Q Consensus 105 ~~~~p~~P~ 113 (396)
.+.....|.
T Consensus 210 aWi~klL~~ 218 (399)
T KOG2820|consen 210 AWINKLLPT 218 (399)
T ss_pred HHHHhhcCc
Confidence 976555664
No 250
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.57 E-value=0.052 Score=53.64 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
+++||+|+|||||..|.-=+..|.+.+.+|+++..
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 56899999999999999988888888889999864
No 251
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.56 E-value=0.024 Score=55.67 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+|+|+|||+|.-|..+|..|++.+..|+++.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 4567999999999999999999999999999998865
No 252
>KOG0399|consensus
Probab=94.54 E-value=0.067 Score=56.59 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.-.||+|+|||+|.+|.-+|..|-+.+..|++..|+.
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 3469999999999999999999999999999999986
No 253
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.52 E-value=0.13 Score=52.20 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~ 108 (396)
++.++.++|.+.+.++ ++. |+++++|++++.++++++|+++ +| .++++|+||.|.|.++.
T Consensus 111 ~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 111 HQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred ChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 5678888998888876 666 9999999999998888888876 45 35899999999999764
No 254
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=94.51 E-value=0.14 Score=49.51 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+..+.++|.+.+...++. + +.++|+.+... ++.|.|++++|.++++|.||.|+|..+
T Consensus 82 i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 82 VDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 46789999999999888764 4 57789998877 778999998887899999999999954
No 255
>KOG4716|consensus
Probab=94.51 E-value=0.17 Score=46.70 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=26.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEe
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHST 166 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~ 166 (396)
..+|||||.-|.-+|.+.+..+++|-++.
T Consensus 21 DLIviGgGSgGLacaKeAa~~G~kV~~lD 49 (503)
T KOG4716|consen 21 DLIVIGGGSGGLACAKEAADLGAKVACLD 49 (503)
T ss_pred cEEEEcCCcchhhHHHHHHhcCCcEEEEe
Confidence 69999999999999999999999988774
No 256
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.45 E-value=0.054 Score=43.91 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+++++|+|||+|..|--++..|...+ ++|+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 578999999999999999999999874 5699999874
No 257
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.45 E-value=0.14 Score=50.39 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
+...++..++..+.. .|+++++|++|+..+++|.|++.+|+++.||+||+|+-.
T Consensus 220 ~~~l~~~l~~~l~~~-~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 220 LQSLIEALEEKLPAG-TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred HHHHHHHHHHhCcCC-eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 344444555544321 599999999999888889998888888999999999876
No 258
>PRK06753 hypothetical protein; Provisional
Probab=94.44 E-value=0.092 Score=50.38 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.+.. . .|+++++|++|+.+++.+.|++++|+++.+|.||-|.|.++
T Consensus 95 i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 95 LHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred ccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 4678888888877653 2 38999999999988888999998898899999999999865
No 259
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.35 E-value=0.27 Score=44.12 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce---eecCCCCCCChhHHHHhhCccccC-hHHHHHHHHHHHHHhcCC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH---YYPKFIDGKPTPQWMLQLGNKFSS-KEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~---~~p~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~ 213 (396)
.|+|||+|.-|+-+|..|...+.+|+++.++... ...|...+-..|.-. ..++. .+.+.++.+.+.+.-.-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGA----qYfk~~~~~F~~~Ve~~~~~glV~ 78 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGA----QYFKPRDELFLRAVEALRDDGLVD 78 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccc----eeecCCchHHHHHHHHHHhCCcee
Confidence 5899999999999999999999999999986421 111111111111100 00100 122223333333221100
Q ss_pred ---CCCCCC-----C-CCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC--C--eEEecCCcE-ecCcEEEEccCC
Q psy2343 214 ---GVDYGL-----K-KPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFVDDTH-IEVDTIIYATGY 279 (396)
Q Consensus 214 ---~~~~~~-----~-~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~--~--~v~~~dG~~-~~~D~VI~aTG~ 279 (396)
+..|+. + .+....+...|-++.-...+...-+|....+|+++.. + .++.+||+. ..+|.|+++.--
T Consensus 79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred eccccccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence 111111 1 1111113333434433333334446666667776642 2 377777775 789999998765
Q ss_pred CCCCCCCC
Q psy2343 280 NRHFPFID 287 (396)
Q Consensus 280 ~~~~~~l~ 287 (396)
-...++|.
T Consensus 159 PQ~~~LLt 166 (331)
T COG3380 159 PQTATLLT 166 (331)
T ss_pred CcchhhcC
Confidence 55555664
No 260
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.30 E-value=0.056 Score=44.87 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+.||+++|+|-|..|--+|..|...+.+|++....|
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4689999999999999999999999999999998865
No 261
>PRK09126 hypothetical protein; Provisional
Probab=94.30 E-value=0.17 Score=48.89 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHH-HcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAK-KFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~-~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
++..+.+-|.+.+. ..++. |+++++|++++.+++.+.|++++|+++.+|.||.|.|.++
T Consensus 108 ~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 108 PNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred eHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 44556655555553 34666 9999999999988778889888888899999999999954
No 262
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.29 E-value=0.18 Score=49.69 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+.+.+.+++.++. ++++++|++|+.+++.+.+.+++++ +.+|.|++|+|. .|+..
T Consensus 199 ~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~G~--~pn~~ 257 (441)
T PRK08010 199 RDIADNIATILRDQGVD--IILNAHVERISHHENQVQVHSEHAQ-LAVDALLIASGR--QPATA 257 (441)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEeecC--CcCCC
Confidence 57888888889998987 8999999999887666777665554 789999999999 77754
No 263
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.28 E-value=0.041 Score=53.45 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=30.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||||..|+++|..|++.+.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999998764
No 264
>PRK06185 hypothetical protein; Provisional
Probab=94.25 E-value=0.17 Score=49.25 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeE-EEEE--ccCc-EEEcCEEEEcccCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW-EVEL--SNGK-KKKYDFIAVCNGAQR 107 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~-~V~~--~~g~-~~~~d~vvvAtG~~~ 107 (396)
+.++.++.++|.+.+++. ++. ++++++|+++..+++.+ .|++ .+|+ ++.+|.||.|.|.++
T Consensus 104 ~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 104 MMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred EeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 456788999999988776 665 88999999998876554 2333 3554 689999999999976
No 265
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.21 E-value=0.22 Score=49.49 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+..++.+++ ++++++|++++.+++...+++. +| .++.+|.||+|+|. .|+..
T Consensus 213 ~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~--~pn~~ 276 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVK--ILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF--APRVE 276 (466)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc--ccCCC
Confidence 56788888888888988 9999999999876666666554 55 35899999999998 77765
No 266
>PRK11445 putative oxidoreductase; Provisional
Probab=94.04 E-value=0.24 Score=47.19 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~ 108 (396)
.++.++.+.|.+.+ ..++. ++++++|+.++..++.|.|+. ++|+ ++++|.||.|+|..+.
T Consensus 96 i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 96 IDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred ccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 56788888888754 44565 889999999998888899886 4554 5889999999999653
No 267
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.02 E-value=0.25 Score=48.64 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe---EEEEEccCc--EEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI---WEVELSNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~---~~V~~~~g~--~~~~d~vvvAtG~~~~ 108 (396)
..+.++.+.|...+++.+++ ++++++|+++..+ +++ ..+...+++ .+.++.||+|||.++.
T Consensus 127 ~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 127 GSGAEIVQKLYKKAKKEGID--TRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 34678999999999999987 9999999999875 332 233333443 3678999999998653
No 268
>KOG0404|consensus
Probab=94.01 E-value=0.38 Score=41.93 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEE
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHS 165 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~ 165 (396)
..+|+|||+|..|.-.|..+++..-+-.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllf 37 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLF 37 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEE
Confidence 458999999999999999998864344444
No 269
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.91 E-value=0.11 Score=50.21 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=37.7
Q ss_pred HcCCCCceEeCcEEEEEEEe-CCeEEEEEcc---C--cEEEcCEEEEcccCCCCC
Q psy2343 61 KFDVYNHSIFNTEVINLEQY-EDIWEVELSN---G--KKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 61 ~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~p 109 (396)
+-+.. ++|+++|++|++. ++.|.|++.+ + .++.+++|+|+.|.++.|
T Consensus 194 ~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 194 QKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred CCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 33665 9999999999998 6669999854 2 358999999999997644
No 270
>PRK14727 putative mercuric reductase; Provisional
Probab=93.90 E-value=0.25 Score=49.24 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.+++.+.+.+.+++.++. ++++++|++++.+++.+.|.+.+++ +.+|.||+|+|. .|+..
T Consensus 227 d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~~~~v~~~~g~-i~aD~VlvA~G~--~pn~~ 286 (479)
T PRK14727 227 DPLLGETLTACFEKEGIE--VLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGR--HANTH 286 (479)
T ss_pred hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeCCEEEEEEcCCe-EEeCEEEEccCC--CCCcc
Confidence 456888888888888987 8899999999877777777766654 889999999999 77654
No 271
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.89 E-value=0.18 Score=49.06 Aligned_cols=58 Identities=21% Similarity=0.411 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEcc-C--cEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSN-G--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g--~~~~~d~vvvAtG~~~ 107 (396)
+..+.+.|.+.+... ++. ++++++|++|+.+++.+.|++.+ + .++++|.||.|.|.++
T Consensus 120 ~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 120 HQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred cHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 456788888877765 565 88999999998887888888763 2 3589999999999976
No 272
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.81 E-value=0.21 Score=48.24 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
+..+..-|.+-++.. ++. ++++++|++++.+++.++|++++|.++++|.||.|.|.+|.
T Consensus 109 ~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 109 NRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred cHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 445665665555554 455 88999999999887888999999988999999999999763
No 273
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.80 E-value=0.32 Score=48.19 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+..++.++. ++++++|++|+.+++...+....+ .++.||.||+|+|. .|+...
T Consensus 210 d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~--~p~~~~ 272 (458)
T PRK06912 210 DEDIAHILREKLENDGVK--IFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGR--KPRVQQ 272 (458)
T ss_pred cHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCC--ccCCCC
Confidence 357888888888888987 999999999987655555543322 35889999999998 777653
No 274
>PRK08013 oxidoreductase; Provisional
Probab=93.77 E-value=0.22 Score=48.43 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+..+.+-|.+.+... ++. ++++++|++++.+++.+.|+..+|+++.+|.||-|.|.+|
T Consensus 108 i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 108 IENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred EEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 45778888888888776 566 8999999999888778888888888899999999999976
No 275
>KOG2614|consensus
Probab=93.77 E-value=0.55 Score=44.72 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||||.+|+-.|..+.+.+-+|.+...+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 579999999999999999999998888888754
No 276
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.77 E-value=0.29 Score=53.36 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|..|+..|..+++.+.+|+++.+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4689999999999999999999999999998864
No 277
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=93.77 E-value=0.47 Score=45.65 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
..+..+.+++...++..+. ++++++|++|+..++.+.|++.+|.+++++.||-|+|..
T Consensus 84 i~~~~f~~~l~~~~~~~~~---~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 84 IDRADFYEFLLERAAAGGV---IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred EEHHHHHHHHHHHhhhCCe---EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 5788999999999984443 788999999999877899999999899999999999973
No 278
>PRK07846 mycothione reductase; Reviewed
Probab=93.76 E-value=0.26 Score=48.71 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
.++.+.+.+..+ .++. ++++++|++++.+++...|++.+++++.+|.|++|+|. .|+...
T Consensus 207 ~~~~~~l~~l~~-~~v~--i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~~ 266 (451)
T PRK07846 207 DDISERFTELAS-KRWD--VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR--VPNGDL 266 (451)
T ss_pred HHHHHHHHHHHh-cCeE--EEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC--ccCccc
Confidence 566677766543 4565 88999999998766667777777888999999999999 787654
No 279
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=93.70 E-value=0.23 Score=49.29 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=34.8
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 67 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 67 ~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
.|+++++|++|++.+++|.|++.+|+++.||+||+|+-.
T Consensus 240 ~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 240 VVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred cEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence 499999999999988889998888877899999999864
No 280
>PRK10015 oxidoreductase; Provisional
Probab=93.64 E-value=0.27 Score=48.24 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+..+.++|.+.++..++. ++++++|+.+..+++++.+...++.++.+|.||+|+|..+
T Consensus 106 ~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 106 LRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred ehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 5778888999999998887 8899999999877666654333445689999999999843
No 281
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.64 E-value=0.29 Score=49.08 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
+++.+++++..++.++. ++++++|.+|+..++...|...+|+++.+|.|++|+|. .|+...
T Consensus 222 ~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~~ 282 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTL--FLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR--KPDIKG 282 (499)
T ss_pred HHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC--CCCccc
Confidence 46778888888888987 88999999998765556677777878899999999999 777653
No 282
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.61 E-value=0.13 Score=48.78 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=28.8
Q ss_pred eEeCcEEEEEEEeC-CeEEEEEcc---C--cEEEcCEEEEcccC
Q psy2343 68 SIFNTEVINLEQYE-DIWEVELSN---G--KKKKYDFIAVCNGA 105 (396)
Q Consensus 68 i~~~t~V~~v~~~~-~~~~V~~~~---g--~~~~~d~vvvAtG~ 105 (396)
++-+++|+.++..+ ++|++++.+ + .+..+|+||+|||-
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 66799999999986 699999875 2 35789999999995
No 283
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.58 E-value=0.25 Score=48.43 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
+++.+++.+.++..|++ ++++++|.+|+.++. . +.+.+|+++.||.||+|+|. .|+.+
T Consensus 179 ~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~--~p~~~ 236 (427)
T TIGR03385 179 EEMNQIVEEELKKHEIN--LRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGI--KPNSE 236 (427)
T ss_pred HHHHHHHHHHHHHcCCE--EEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCc--cCCHH
Confidence 57888899999999987 889999999987543 3 45567778999999999998 66654
No 284
>PRK06126 hypothetical protein; Provisional
Probab=93.57 E-value=0.25 Score=50.15 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~--~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.+++. ++. |+|+++|++++.+++++++++.+ |+ ++.+|+||.|.|.++
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 35677888998888765 566 99999999999887777776643 53 578999999999976
No 285
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.54 E-value=0.22 Score=47.60 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 46 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.+...+...|.+.+.. .|+. ++.+++|++|+.. .|++.+|. +.+|.||+|||.++..-.|
T Consensus 142 v~p~~~~~~l~~~~~~~~Gv~--i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~~l~~ 202 (365)
T TIGR03364 142 VEPREAIPALAAYLAEQHGVE--FHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFETLFP 202 (365)
T ss_pred ECHHHHHHHHHHHHHhcCCCE--EEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChhhhCc
Confidence 3456777777777655 4877 8889999999752 67777775 6799999999997544334
No 286
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.52 E-value=0.31 Score=48.26 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
+++.+.+.+..+ .++. ++++++|++++.+++...|++.+|+++.+|.|++|+|. .|+...
T Consensus 210 ~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~~ 269 (452)
T TIGR03452 210 EDISDRFTEIAK-KKWD--IRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR--VPNGDL 269 (452)
T ss_pred HHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc--CcCCCC
Confidence 566667766554 4665 88999999998876667777777878999999999998 777643
No 287
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.51 E-value=0.29 Score=49.20 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~--~~~~d~vvvAtG~~~ 107 (396)
...+...+...+...|.. ++.+++|+++.++++.|.|++.+ |+ ++.++.||+|+|.+.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAE--ILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 455666667778888987 88999999998877789888764 43 589999999999965
No 288
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.50 E-value=0.2 Score=48.24 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
+++|+|+|||+|..|.-+|..|++.+ ++|++..|..
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~ 212 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL 212 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 57899999999999999999999975 7788888863
No 289
>PLN02568 polyamine oxidase
Probab=93.46 E-value=0.29 Score=49.49 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
..++..++... ...|+++++|++|+..++.++|++.+|+++.||+||+++=.
T Consensus 243 ~Li~~La~~L~-~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 243 SVIEALASVLP-PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHhhCC-CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 34444555442 23599999999999988889999999888999999998865
No 290
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.43 E-value=0.28 Score=49.23 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC----cEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g----~~~~~d~vvvAtG~~~ 107 (396)
....+...+...+...|.. ++.+++|+++.++++.|.|++.++ .++.++.||.|+|.++
T Consensus 153 d~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 153 DDARLVVLNALDAAERGAT--ILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred cHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 3466666777778888987 889999999998877898887654 2489999999999865
No 291
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.43 E-value=0.08 Score=51.58 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|.+|++.+.+|+++.|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999874
No 292
>PRK07233 hypothetical protein; Provisional
Probab=93.41 E-value=0.26 Score=48.26 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+.+-|.+.++..+.. |+++++|++|+.+++++.+...++.++.+|+||+|+....
T Consensus 198 ~~l~~~l~~~l~~~g~~--v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 198 ATLIDALAEAIEARGGE--IRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHHhcCce--EEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 56777777777777765 9999999999988777776666777789999999999743
No 293
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.36 E-value=0.29 Score=47.57 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
...+.+-|.+.+... ++. ++++++|++++.+++.+.|++++|+++++|.||.|.|.++
T Consensus 110 ~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 110 NRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 456667777766654 455 8899999999988778889998898899999999999965
No 294
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.34 E-value=0.25 Score=40.20 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||.+. .|.-+|..|.+.+..|++++++
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~ 61 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK 61 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence 68899999999655 5666788888778888888754
No 295
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.34 E-value=0.36 Score=48.20 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++....++.++. ++++++|++|+.. ++...|++.+++++.+|.|++|+|. .|+..
T Consensus 231 ~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~Pn~~ 291 (486)
T TIGR01423 231 STLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR--VPRTQ 291 (486)
T ss_pred HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC--CcCcc
Confidence 67888898989888987 9999999999875 3335666667778999999999998 77754
No 296
>PLN02268 probable polyamine oxidase
Probab=93.33 E-value=0.21 Score=49.11 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=34.6
Q ss_pred eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
|+++++|++|++.+++|+|++.+|+++.+|+||+|+-.
T Consensus 213 i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 213 IRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred eeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 99999999999988889999988888999999999854
No 297
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.20 E-value=0.38 Score=47.25 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEE--EEc-cCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEV--ELS-NGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V--~~~-~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+-|...+++.+++ |+++++|+++..++ +.+.+ ... ++..+.+++||+|||.+.
T Consensus 121 ~g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 121 GGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred CHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 3567889999999999987 99999999998752 34443 232 334688999999999854
No 298
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.18 E-value=0.39 Score=47.94 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+..+..++. ++++++|.+|+..++...|+..++ +++.+|.|++|+|. .|+..
T Consensus 220 ~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~--~pn~~ 282 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVK--FKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR--DACTR 282 (484)
T ss_pred HHHHHHHHHHHHHcCCE--EEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC--CcCCC
Confidence 67888888888888987 899999999987655556665554 36899999999998 77764
No 299
>KOG1346|consensus
Probab=93.18 E-value=0.17 Score=48.08 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=39.9
Q ss_pred cCchhhhcccCCCeEecC--CcceEeC--CeEEecCCcEecCcEEEEccCCCCC-CCCCCc
Q psy2343 233 MNSQILYHIGHGDILPKD--DIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRH-FPFIDK 288 (396)
Q Consensus 233 ~~~~~~~~i~~g~i~~~~--~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~-~~~l~~ 288 (396)
++++=+....+|.|.+.. .+..++. +.|++.||++|.+|-.++|||.+|. .+.+++
T Consensus 259 vspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 259 VSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE 319 (659)
T ss_pred eChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence 344444555566666532 5666653 5799999999999999999999985 455554
No 300
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.09 E-value=0.38 Score=45.33 Aligned_cols=59 Identities=25% Similarity=0.315 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~--~~~~d~vvvAtG~~~ 107 (396)
.+.++.+.|.+.++..++. ++++++|++++.+.++.++.+.+ |+ ++++|.||-|.|.+|
T Consensus 109 ~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 109 DRPELDRALREEAEERGVD--IRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp EHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred hHHHHHHhhhhhhhhhhhh--heeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 5789999999999999876 99999999999887766655543 32 589999999999976
No 301
>PRK13748 putative mercuric reductase; Provisional
Probab=93.04 E-value=0.39 Score=48.90 Aligned_cols=60 Identities=8% Similarity=0.120 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+.+.+..+..++. ++++++|.+|+.+++.+.+.++++ ++.+|.|++|+|. .|+..
T Consensus 309 d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~--~pn~~ 368 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR--APNTR 368 (561)
T ss_pred CHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC--CcCCC
Confidence 357888888888888987 889999999987767777776655 4899999999998 78765
No 302
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.01 E-value=0.13 Score=50.16 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=38.6
Q ss_pred ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-C-CcEEEEeccC
Q psy2343 121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRG 169 (396)
Q Consensus 121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~-~~V~l~~r~~ 169 (396)
.+.-+..|+....-+.-+|+|||+|.+|+-+|.+|++. + ++|+++.|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 33445556666655667899999999999999999985 6 5899999863
No 303
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.96 E-value=0.34 Score=35.05 Aligned_cols=42 Identities=31% Similarity=0.291 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 91 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g 91 (396)
.+++.+++.++.++.+++ ++++++|.+|+.++++++|+++||
T Consensus 39 ~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTSEEEEEETS
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCEEEEEEecC
Confidence 468899999999999998 999999999999865577888775
No 304
>KOG0405|consensus
Probab=92.92 E-value=0.41 Score=44.53 Aligned_cols=130 Identities=21% Similarity=0.195 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc--------eeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHH
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY--------HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF 207 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~--------~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 207 (396)
.=..+|||+|.-|+-.|+..++.+.+|-++.-... -++|+... |... .+
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm-------------~~~a----------~~ 76 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVM-------------WYAA----------DY 76 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeE-------------Eehh----------hh
Confidence 34689999999999999999999999888875411 12222210 1000 01
Q ss_pred HHhcCCCCCCCCCCCCCC-CCcc-----c----CccCchhhhcccCCCeEecCCcceEe-CC--eEEecCCcE--ecCcE
Q psy2343 208 KLAGFDGVDYGLKKPDHP-LDAA-----H----PIMNSQILYHIGHGDILPKDDIKNLN-GN--IVHFVDDTH--IEVDT 272 (396)
Q Consensus 208 ~~~~~~~~~~~~~~p~~~-~~~~-----~----~~~~~~~~~~i~~g~i~~~~~i~~i~-~~--~v~~~dG~~--~~~D~ 272 (396)
.....+...||++...+. +... + .-++.-+...+....|++...-.++. .+ .|...||++ +.+..
T Consensus 77 ~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~ 156 (478)
T KOG0405|consen 77 SEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKH 156 (478)
T ss_pred hHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecce
Confidence 112234445555432211 1110 0 11233334444445555433333332 23 466678864 67999
Q ss_pred EEEccCCCCCCCCCCc
Q psy2343 273 IIYATGYNRHFPFIDK 288 (396)
Q Consensus 273 VI~aTG~~~~~~~l~~ 288 (396)
|++|||-+|..|-++.
T Consensus 157 iLIAtGg~p~~PnIpG 172 (478)
T KOG0405|consen 157 ILIATGGRPIIPNIPG 172 (478)
T ss_pred EEEEeCCccCCCCCCc
Confidence 9999999999886654
No 305
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.92 E-value=0.43 Score=47.41 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---c--CcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---N--GKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~--g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++++..+..+++ ++++++|++|+.+++...++.. + ++++.+|.|++|+|. .|+..
T Consensus 215 ~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~pn~~ 279 (466)
T PRK06115 215 TETAKTLQKALTKQGMK--FKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR--RPYTQ 279 (466)
T ss_pred HHHHHHHHHHHHhcCCE--EEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC--ccccc
Confidence 56778888888888987 9999999999876556665543 2 346899999999998 77654
No 306
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=92.85 E-value=0.39 Score=48.09 Aligned_cols=56 Identities=14% Similarity=0.034 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
..+.+-|.+.+++.|.. |+++++|++|..+ ++.+.|.+.+|+++.+|.||+|+|..
T Consensus 229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 57888899999999987 9999999999876 44577888888889999999999973
No 307
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.82 E-value=0.43 Score=47.86 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
..+.+-|.+.+++.|.. |+++++|++|..++++ +.|++++|+++.+|.||+|++.
T Consensus 219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcH
Confidence 57888888888888877 9999999999877544 7888888888999999999996
No 308
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.77 E-value=0.39 Score=46.20 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
.++.++.+.|.+.+...+ +. ++++++|+++..+++.+.|+++++ ++++|.||.|-|.+|.
T Consensus 101 v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 101 VKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred EEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 467899999999888875 44 788999999988878888988776 7999999999999763
No 309
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=92.74 E-value=0.33 Score=44.02 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-e-EEEEEc------c-----CcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-I-WEVELS------N-----GKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~-~~V~~~------~-----g~~~~~d~vvvAtG~~~ 107 (396)
++.++...|...+.+.++. ++++++|+++..+++ . +-|.+. + ..++.++.||+|||+.+
T Consensus 102 d~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 102 DSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred cHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 5678899999999999987 999999999876533 2 222211 1 23588999999999843
No 310
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=92.58 E-value=0.15 Score=46.88 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=30.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+.+|||+|.||+=+|..+++.++.|-++.+|++
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 689999999999999999999999999999874
No 311
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.58 E-value=0.53 Score=47.79 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEc--cCc-EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NGK-KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g~-~~~~d~vvvAtG~~~ 107 (396)
+...+.++|.+.+.++ ++. ++++++|++++.+++.+.++.. ++. ++.+|+||.|.|.++
T Consensus 123 ~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 123 QQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred CHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence 5667889999988876 455 8999999999988777877664 343 589999999999966
No 312
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.49 E-value=0.12 Score=49.58 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||.+|+=+|.+|++.+.+|+++.|..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 69999999999999999999999999999864
No 313
>PLN02697 lycopene epsilon cyclase
Probab=92.41 E-value=0.49 Score=47.60 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE-EEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V-~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.+...++. + ++++|+.|..+++.+.+ ++.+|.++.++.||+|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 57889999999999888875 4 78899999887666654 456777899999999999965
No 314
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.41 E-value=0.2 Score=36.91 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEec
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTR 167 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r 167 (396)
..+.+|+++|+|.|..|.-++..+.+. ..+|+++.|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346789999999999999999999987 778888877
No 315
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.27 E-value=0.13 Score=48.56 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=29.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|+-+|.+|++.+.+|+++.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999997
No 316
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.26 E-value=0.13 Score=48.51 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=29.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999864
No 317
>PLN02676 polyamine oxidase
Probab=92.25 E-value=0.46 Score=47.44 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=36.4
Q ss_pred CceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 66 NHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 66 ~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
..|++|++|++|+..+++.+|++.+|+++.+|+||+|...
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 4599999999999988889999999988999999999985
No 318
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.22 E-value=0.14 Score=49.28 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=29.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 59999999999999999999998999999854
No 319
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.20 E-value=0.36 Score=46.91 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCcEEEcCEEEEcccCC
Q psy2343 52 LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 52 ~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~~~~~d~vvvAtG~~ 106 (396)
.+-|.++++..+.. |++|++|++|+.+++++++.+ .+|+++.||+||+|+-..
T Consensus 200 ~~~l~~~l~~~g~~--i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRGGE--VRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcCCE--EEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 34466666666765 999999999999877665544 356678999999998763
No 320
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.16 E-value=0.51 Score=43.19 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.| ..|.-+|..|.+.+..|++++.+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~ 190 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL 190 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence 6789999999999 88999999998888889988643
No 321
>PRK07045 putative monooxygenase; Reviewed
Probab=92.13 E-value=0.57 Score=45.24 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCC--eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~--~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.+.|.+.+... ++. ++++++|++++.+++ .+.|+.++|+++.+|.||.|.|.++
T Consensus 103 i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 103 IPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred ccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 35678888887777543 555 999999999998643 3578888888899999999999976
No 322
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.09 E-value=0.4 Score=43.89 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCc-HHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.|.+ |.-+|..|.+.+..|++++.+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence 578999999999988 999999999888889887654
No 323
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=92.08 E-value=0.16 Score=50.11 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~ 169 (396)
++|+|||||.+|.-+|..|++.+ .+|+++..++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 57999999999999999999976 7899998764
No 324
>KOG0029|consensus
Probab=92.03 E-value=0.2 Score=50.01 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+.++|+|||+|.+|+-+|..|.+.+-+|++..-|+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 3456789999999999999999999999999988765
No 325
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.95 E-value=0.59 Score=45.18 Aligned_cols=60 Identities=30% Similarity=0.307 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.+-|.+.+...+ +. ++++++|+.++.+++..+++.+ +|+++.+|.||-|-|.+|
T Consensus 101 ~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 101 VPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred eEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 367899999999998875 66 8999999999998888888888 899999999999999976
No 326
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.82 E-value=0.33 Score=47.40 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+.+|+|+|+|-|.||.-+|..|.+.+..|+++..++
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCC
Confidence 3458999999999999999999999999999998665
No 327
>PRK05868 hypothetical protein; Validated
Probab=91.70 E-value=0.62 Score=44.76 Aligned_cols=58 Identities=14% Similarity=0.279 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
+.++.+-|...+ ..+++ ++|+++|++++.+++..+|+.++|++.++|.||-|-|.+|.
T Consensus 104 R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 104 RDDLVELLYGAT-QPSVE--YLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 455555554322 23444 89999999998877888899989888999999999999763
No 328
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=1.1 Score=41.80 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.4
Q ss_pred eEEecCCcEecCcEEEEccCCCCCC
Q psy2343 259 IVHFVDDTHIEVDTIIYATGYNRHF 283 (396)
Q Consensus 259 ~v~~~dG~~~~~D~VI~aTG~~~~~ 283 (396)
.|.+.+|..+++..||++||-+...
T Consensus 303 ev~l~nGavLkaktvIlstGArWRn 327 (520)
T COG3634 303 EVELANGAVLKARTVILATGARWRN 327 (520)
T ss_pred EEEecCCceeccceEEEecCcchhc
Confidence 5889999999999999999998653
No 329
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=91.64 E-value=0.16 Score=51.01 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||||.+|+-+|.++++.+.+|.++.+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 369999999999999999999999999999864
No 330
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.60 E-value=1.3 Score=43.20 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE-EEccCc--EEEcCEEEEcccCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGK--KKKYDFIAVCNGAQ 106 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V-~~~~g~--~~~~d~vvvAtG~~ 106 (396)
+.++.+.|.+.+++.++. ++.+++|++++..+++..+ .+.+++ .+.+|.||+|||.+
T Consensus 258 G~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 258 GLRLQNALRRAFERLGGR--IMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 457888899888888876 9999999999987654433 333443 47899999999983
No 331
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=91.59 E-value=0.62 Score=44.70 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.+..+.+++++.++.. +|. | ++++|++|..+++ -+-|.+.+|..+.+|.||+|||.+
T Consensus 93 Dr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 93 DRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp -HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred cHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 4789999999999884 443 3 5789999988744 466888899999999999999983
No 332
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=91.55 E-value=0.61 Score=45.89 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHcC---CCCceEeCcEEEEEEEe-------CCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQY-------EDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~---l~~~i~~~t~V~~v~~~-------~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
++..+.+.|.+.+...+ +. ++++++|++++.. ++..+|++.+|+++++|.||-|-|.+|.
T Consensus 115 ~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 115 ENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 57788898988888764 55 8999999999752 4568888888989999999999999763
No 333
>PRK07233 hypothetical protein; Provisional
Probab=91.55 E-value=0.17 Score=49.47 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=29.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|.-.|..|++.+.+|+++.+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 59999999999999999999999999998875
No 334
>PRK07236 hypothetical protein; Provisional
Probab=91.54 E-value=0.58 Score=45.18 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p 109 (396)
+...+.+.|.+ .+. ...++++++|++++.+++.++|+.++|+++.+|.||.|-|.++.-
T Consensus 98 ~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 98 SWNVLYRALRA---AFP-AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 44555555543 332 124899999999998888899999999889999999999997643
No 335
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=91.52 E-value=0.74 Score=45.55 Aligned_cols=57 Identities=26% Similarity=0.357 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE--EEEEccCcEEEcCEEEEcccCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW--EVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~--~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.+..+-++|.+.|.+.|+. ++-+ +|++|..+++++ .|++++|+++++|.||-|||..
T Consensus 152 DR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp EHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred eHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 5799999999999999987 5444 688888875554 5777889899999999999983
No 336
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.45 E-value=0.15 Score=42.41 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|+|+|+-|.=+|..|+..+.+|++..|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 337
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=91.36 E-value=0.18 Score=48.89 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=29.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
+|+|||||.+|+=+|.+|++. +.+|+++.|.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 699999999999999999998 88999999864
No 338
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.34 E-value=0.52 Score=43.94 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|..|.=+|..|++.+.+|+++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 379999999999999999999988999999964
No 339
>PRK08401 L-aspartate oxidase; Provisional
Probab=91.33 E-value=0.83 Score=45.38 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
++..+.+.|...+++.++. +.++ +|+.+..+++.+. |.+ ++..+.+++||+|||.++.
T Consensus 118 ~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 118 TGKHIIKILYKHARELGVN--FIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred chHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 4678999999999988886 6554 7888766555554 333 5566899999999999653
No 340
>PLN02612 phytoene desaturase
Probab=91.31 E-value=0.73 Score=47.00 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
+.+.+-|.+..+..|.+ |+++++|++|+.++++ +.|.+.+|+++.+|+||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~--I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGE--VRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCE--EEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 34556666666666765 9999999999986444 3466677888999999999876
No 341
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=91.30 E-value=0.2 Score=45.94 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 59999999999999999999999999999885
No 342
>PRK06996 hypothetical protein; Provisional
Probab=91.27 E-value=0.65 Score=45.03 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGA 105 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~ 105 (396)
.++.++.+.|.+.+...++. ++++++|++++.+.+.++|+..++ +++++|.||.|.|.
T Consensus 112 v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 112 VRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred EEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 45788999999999888865 889999999988888899988754 57999999999995
No 343
>PRK07538 hypothetical protein; Provisional
Probab=91.21 E-value=1.6 Score=42.63 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeEEEEEccC-----cEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-----~~~~~d~vvvAtG~~~~ 108 (396)
.++.++.+.|.+.+.. .+. ..|+++++|++++.+++...+.+.++ +++.+|.||-|.|.++.
T Consensus 99 i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 99 IHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred EEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 4678888888777654 452 24899999999988765555555432 36899999999999763
No 344
>KOG1335|consensus
Probab=91.21 E-value=1.7 Score=41.09 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEcc---C--cEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN---G--KKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~p~~P 112 (396)
.|+..-+++..+.-++. .+++|+|..+++. ++...|++.+ + +++++|.++||+|. +|..-
T Consensus 252 ~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR--rP~t~ 317 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR--RPFTE 317 (506)
T ss_pred HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC--ccccc
Confidence 58888889999988887 8899999999998 4467777654 2 35899999999998 77654
No 345
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=91.21 E-value=0.6 Score=45.65 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
..-+...++..++..... |+++++|+.|.++...+.+...+|..++||.||++.=.
T Consensus 211 ~gG~~~l~~al~~~l~~~--i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 211 RGGLQSLIEALAEKLEAK--IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred CccHHHHHHHHHHHhhhc--eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 445777777888877766 99999999999986667777778888999999998765
No 346
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.20 E-value=0.25 Score=47.84 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
..+|+|||+|.+|+=+|..|++.+-+|+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999999863
No 347
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=91.17 E-value=0.88 Score=45.16 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc--cC--cEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS--NG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~--~g--~~~~~d~vvvAtG~~~ 107 (396)
+..+...|...+++.++. ++++++|+++..++++.. |... ++ ..+.++.||+|||.+.
T Consensus 130 g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 130 GKALVNALYRSAERLGVE--IRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 467888898999999987 999999999987655433 4332 23 2478999999999854
No 348
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=91.09 E-value=0.35 Score=45.02 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
-..|++..+..++ ..|..++-|.+|++..++..|+..+|++..||+||+||=..
T Consensus 219 S~~yvq~laa~~~--~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 219 SRAYVQRLAADIR--GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred hHHHHHHHhcccc--ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence 3567777777765 34899999999999855555666678888999999999773
No 349
>KOG1800|consensus
Probab=91.08 E-value=0.67 Score=43.70 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
-.+|.|||+|..|+=.|..|++. ..+|+++.+.|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~P 55 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLP 55 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCC
Confidence 34899999999999999999884 46899999876
No 350
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=91.06 E-value=0.21 Score=50.67 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 69999999999999999999999999999864
No 351
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.90 E-value=0.23 Score=48.46 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=29.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||..|+=+|.+|++.+.+|+++.+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 69999999999999999999999999999863
No 352
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=90.89 E-value=0.18 Score=43.96 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
....|+|||+|.+|.-+|..|++.+.+|.++.++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 34579999999999999999999999999999874
No 353
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.89 E-value=0.63 Score=38.76 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||.+ ..|.-++..|.+....|++++..
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~ 69 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK 69 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence 5889999999977 58999999999998899998765
No 354
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.89 E-value=0.23 Score=49.86 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=30.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||||.+|+-+|.+|++.+.+|.++.+..
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 69999999999999999999999999999874
No 355
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.73 E-value=1.6 Score=44.72 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=28.2
Q ss_pred CeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCC
Q psy2343 245 DILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRH 282 (396)
Q Consensus 245 ~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~ 282 (396)
+|++ ..++..++. ..|+.++|..+..|-+|+|||..|-
T Consensus 73 ~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 73 GITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred CcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 4554 346777764 4577778889999999999998654
No 356
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.71 E-value=0.26 Score=47.83 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=31.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
++|+|||||.+|+=+|..|++.+-+|+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998763
No 357
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.68 E-value=1 Score=45.39 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELS---NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~---~g~--~~~~d~vvvAtG~~~ 107 (396)
.....+..-+...+..+|.. |.++++|++|.++++++ .|++. +|+ ++.++.||+|+|.+.
T Consensus 125 vdp~~l~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 125 VDPFRLVAANVLDAQEHGAR--IFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred ECHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 34566777777788889987 99999999999876653 35543 242 589999999999864
No 358
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.61 E-value=0.24 Score=47.31 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=29.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|.+|++.+.+|+++.+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 59999999999999999999999999999864
No 359
>PLN02576 protoporphyrinogen oxidase
Probab=90.60 E-value=0.83 Score=45.73 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEc--cCc-EEEcCEEEEcccC
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS--NGK-KKKYDFIAVCNGA 105 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~--~g~-~~~~d~vvvAtG~ 105 (396)
...+..++..+- ..|++|++|++|++.+++ |.|++. +|+ ++.||+||+|+=.
T Consensus 240 ~L~~~la~~l~~-~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 240 TLPDALAKRLGK-DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred HHHHHHHHhhCc-CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 334444555431 359999999999998665 988765 343 5899999999865
No 360
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.54 E-value=0.99 Score=43.79 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEc---cCcEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~~~~d~vvvAtG~~~~ 108 (396)
++..+.+-|.+.+... ++. ++++++|++++.+++.++|+.. +++++++|.||-|-|.+|.
T Consensus 105 ~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 105 HRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred CHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 6778888888877654 555 8999999999987777888763 3456899999999999773
No 361
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.45 E-value=0.26 Score=47.99 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=31.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|..|+=+|..|++.+.+|+++.|++.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 4799999999999999999999999999999864
No 362
>PRK04148 hypothetical protein; Provisional
Probab=90.40 E-value=0.38 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++++|++||.| +|.++|..|++.+.+|+.+..++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 56899999999 99999999999999999998775
No 363
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=90.40 E-value=1.1 Score=40.51 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE---EEEc-----------cCcEEEcCEEEEcccC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE---VELS-----------NGKKKKYDFIAVCNGA 105 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~---V~~~-----------~g~~~~~d~vvvAtG~ 105 (396)
.+.++.+.|...+.+.+++ ++++++|+++..+++.++ |.+. +..++.++.||.|||+
T Consensus 98 ~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 98 DSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 5678999999999999987 899999999887644222 2221 1235789999999998
No 364
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.35 E-value=0.79 Score=40.40 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeec
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYP 174 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p 174 (396)
..++|++|+|.|.|+.|.-+|..|.+. ++.|.++..++....|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~ 62 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP 62 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC
Confidence 356899999999999999999999998 5566777766654433
No 365
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=90.24 E-value=0.3 Score=47.01 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+=+|.+|++.+.+|+++.+..
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4689999999999999999999988999999765
No 366
>PRK07208 hypothetical protein; Provisional
Probab=90.22 E-value=0.31 Score=48.59 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4689999999999999999999888999998764
No 367
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.21 E-value=0.29 Score=47.32 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||||.+|+=+|..|++.+.+|+++.|.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 479999999999999999999999999999975
No 368
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.19 E-value=1.3 Score=43.04 Aligned_cols=59 Identities=19% Similarity=0.052 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~-~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.....+..-|...+...|+. +..+++|++|+.. ++. +.|++++| ++.++.||||+|.++
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 34456666677788888887 8889999999764 344 45777777 489999999999864
No 369
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=90.18 E-value=0.28 Score=50.63 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||||.+|+-+|.+|++.+.+|.++.+..
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 369999999999999999999999999999864
No 370
>PRK09126 hypothetical protein; Provisional
Probab=90.18 E-value=0.29 Score=47.31 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=31.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
-+|+|||||.+|+=+|..|++.+.+|+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 3699999999999999999999999999999864
No 371
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=90.13 E-value=1.3 Score=44.42 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe---EEEEEccCc--EEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~---~~V~~~~g~--~~~~d~vvvAtG~~~ 107 (396)
+..+.+-|...++..++. ++++++|+++..++++ +.+...+++ ++.+|.||+|||.+.
T Consensus 189 g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIP--LFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred hHHHHHHHHHHHHHcCCe--EEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 456778888888888887 9999999999875553 344444433 478999999999864
No 372
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.11 E-value=0.47 Score=40.37 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+.||+|.|||.|.+|..+|..+...+-+|+.+.|..
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 346789999999999999999999999999999999876
No 373
>PLN02268 probable polyamine oxidase
Probab=90.10 E-value=0.3 Score=47.96 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=29.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.||.-+|..|.+.+.+|+++..++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999888899988654
No 374
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=90.06 E-value=0.31 Score=47.32 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|..|+-+|..|++.+.+|.++.|+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999875
No 375
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.02 E-value=0.31 Score=48.32 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.+|+|+|+|.|.+|+-+|..|.+.+.+|+++.+++
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 457899999999999999999999999999998764
No 376
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=90.00 E-value=0.32 Score=48.19 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~ 169 (396)
++|+|||||.+|+-.|..|++. +.+|+++.+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 5899999999999999999997 78899998765
No 377
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=89.88 E-value=1.5 Score=44.87 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEE--ccCc-EEEc-CEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VEL--SNGK-KKKY-DFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~--~~g~-~~~~-d~vvvAtG~~~ 107 (396)
.+..+.+-|...+++.++. |+++++|+++..++++.. |.. .++. .+.+ +.||+|||.+.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~--i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVR--IWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 3566778888899999987 999999999887655432 333 2333 3678 99999999965
No 378
>PRK07045 putative monooxygenase; Reviewed
Probab=89.87 E-value=0.33 Score=46.86 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=31.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||||.+|+=+|..|++.+-+|+++.|.+.
T Consensus 7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 7 DVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 799999999999999999999999999999874
No 379
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=89.87 E-value=0.3 Score=46.89 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=30.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||+|.+|.=+|..|++.+.+|+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 489999999999999999999999999999864
No 380
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=89.86 E-value=0.32 Score=46.72 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++.+.+|.++.+++
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 59999999999999999998888999998753
No 381
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=89.83 E-value=1.1 Score=45.61 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEc---cC--cEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELS---NG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~---~g--~~~~~d~vvvAtG~~~ 107 (396)
....+...+...+...|.. ++++++|+.+.++++++ .|++. ++ .++.+|.||+|+|.++
T Consensus 147 dp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 4456666677778888987 89999999998875543 35542 23 3589999999999864
No 382
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.82 E-value=0.29 Score=50.95 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||||.+|+-+|..|++.+.+|+++.+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999999999999999999999999863
No 383
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.82 E-value=0.68 Score=43.19 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=29.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|+|+|..|.=++..|++.+..|+++.|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 79999999999999999999988889988875
No 384
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=89.73 E-value=1.2 Score=44.51 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeEE-EEEcc-C--cEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWE-VELSN-G--KKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~-g--~~~~~d~vvvAtG~~~~ 108 (396)
++.++.+.|.+.+++ .++. ++++++|+++..+++... |...+ + ..+.+++||+|||.++.
T Consensus 126 ~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNIR--IIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CHHHHHHHHHHHHHhcCCcE--EEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 467888999998887 5776 899999999887655433 33332 2 24789999999999763
No 385
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.72 E-value=0.39 Score=47.42 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++|+|+|+|+|.+|..+|..|++.+.+|+++.+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 578999999999999999999999999999998864
No 386
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.68 E-value=0.49 Score=41.17 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
...++||+|+|+|.|+.|.-+|..|.+.+.+|+++.++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 44678999999999999999999999999899987665
No 387
>PRK06184 hypothetical protein; Provisional
Probab=89.54 E-value=0.41 Score=48.05 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
-+|+|||+|.+|+=+|..|++.+-+|+++.|++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4799999999999999999999999999999763
No 388
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=89.51 E-value=0.94 Score=44.77 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||||..|+=+|..|++.+.+|.++.++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 479999999999999999999999999999875
No 389
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.42 E-value=0.41 Score=44.16 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|+|.|..|.-+|..|...+.+|+++.|++
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5679999999999999999999999888999998864
No 390
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.37 E-value=0.35 Score=46.64 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=31.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 3699999999999999999999999999999763
No 391
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=89.36 E-value=0.35 Score=46.51 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=30.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~ 170 (396)
.|+|||+|.+|+=+|..|++.+ -+|+++.|.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 4899999999999999999999 99999999763
No 392
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=0.42 Score=46.88 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=31.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+||+|+|+|..|.-+|.+|++.+-+|++..+++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 689999999999999999999999999999886
No 393
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=89.32 E-value=0.35 Score=46.57 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=30.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 699999999999999999999999999998764
No 394
>KOG2960|consensus
Probab=89.29 E-value=2.4 Score=36.74 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred EecCCcEecCcEEEEccCCCCCCCCCCc------cccc-c------cCCcc--ccccccccCCCCcEEEEeccc------
Q psy2343 261 HFVDDTHIEVDTIIYATGYNRHFPFIDK------EKLE-W------KLGIP--DLFIHIAPRNLDNIFFFGFVN------ 319 (396)
Q Consensus 261 ~~~dG~~~~~D~VI~aTG~~~~~~~l~~------~~~~-~------~~~~~--~l~~~~~~~~~p~l~~iG~~~------ 319 (396)
.+-|...+++..|+-+||-...|.-+-- +... . +=+.- .+..+. ...+|++++.|.-.
T Consensus 214 sCMDPNviea~~vvS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~t-revvpgMiv~GMEvaE~DGa 292 (328)
T KOG2960|consen 214 SCMDPNVIEAAVVVSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHT-REVVPGMIVAGMEVAELDGA 292 (328)
T ss_pred ccCCCCeeeEEEEEEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhh-hhccCceEEeeeeeeeccCC
Confidence 3456678899999999998876542110 0000 0 00000 111222 23479999998532
Q ss_pred -CcCchhhHHHHHHHHHHHHHhccccCCCc
Q psy2343 320 -AAAGLGDGLRLQGQFIRSYIQAFIRKSKG 348 (396)
Q Consensus 320 -~~~~~~~~ae~qa~~~a~~l~~~~~lp~~ 348 (396)
..++.|......+..+|+.....+.+|..
T Consensus 293 nRMGPTFGaMm~SG~kAaq~aLk~f~~~~a 322 (328)
T KOG2960|consen 293 NRMGPTFGAMMLSGVKAAQQALKHFAAPNA 322 (328)
T ss_pred cccCcchhhhhhcchhHHHHHHHHhcCccc
Confidence 23667777788888888888888777763
No 395
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.28 E-value=1.3 Score=45.06 Aligned_cols=59 Identities=19% Similarity=0.066 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EE-EE---EccCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WE-VE---LSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~-V~---~~~g~--~~~~d~vvvAtG~~~ 107 (396)
++.++...|...+.+.++. |.++++|+++..++++ .. |. ..+++ .+.+++||+|||.+.
T Consensus 132 ~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 132 TGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4678888999988888887 9999999998766443 21 22 13454 478999999999965
No 396
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.25 E-value=0.42 Score=47.62 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.-.|+|||||.+|+-+|.+++..+-+|.|+.+..
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D 45 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence 4579999999999999999999999999999875
No 397
>PRK08275 putative oxidoreductase; Provisional
Probab=89.17 E-value=1.8 Score=44.01 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEE-E---EEccCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWE-V---ELSNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~-V---~~~~g~--~~~~d~vvvAtG~~~~ 108 (396)
++..+.+.|...+++.+++ |.+++.|+++..+ ++... | ...+|+ .+.+++||+|||.++.
T Consensus 135 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 135 EGHDIKKVLYRQLKRARVL--ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred ChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 5778999999999988887 9999999998765 44332 2 223454 3789999999999653
No 398
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.16 E-value=1.1 Score=45.70 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE----EEEEccCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW----EVELSNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~----~V~~~~g~--~~~~d~vvvAtG~~~~ 108 (396)
++..+...|.+.+.+.++. +.+++.|+++..+++.. .+...+++ .+.+++||+|||.++.
T Consensus 133 tG~~i~~~L~~~~~~~gi~--i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 133 TGHAILHELVNNLRRYGVT--IYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred ChHHHHHHHHHHHhhCCCE--EEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 5678999999988888887 88999999987655432 22334554 4789999999999753
No 399
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.11 E-value=1.1 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.|. .|.=+|..|......|++++.+
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~ 197 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF 197 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence 57899999999888 8999999999888889988754
No 400
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.08 E-value=1.1 Score=41.04 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||.+ ..|.=+|..|.+....|++++..
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~ 190 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF 190 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 6789999999988 78899999998887888877643
No 401
>PRK08244 hypothetical protein; Provisional
Probab=89.06 E-value=0.37 Score=48.25 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3699999999999999999999999999999863
No 402
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=88.97 E-value=0.41 Score=46.26 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=29.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+|+|||+|.+|+=+|..|++.+.+|.++.++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5999999999999999999999999999987
No 403
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.96 E-value=0.25 Score=48.98 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=29.4
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||.|.+|+-+|..|.+.+.+|+++.++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999998764
No 404
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=88.93 E-value=0.47 Score=44.58 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+.+|+|+|||+|..|--+|..|...+ ++|++..|+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 468999999999999999999999875 7799998874
No 405
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.91 E-value=0.35 Score=41.30 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=28.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|.|||+|..|..+|..++..+.+|+++.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999865
No 406
>PRK08013 oxidoreductase; Provisional
Probab=88.83 E-value=0.39 Score=46.61 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=31.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|.=+|..|++.+-+|+++.+++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999874
No 407
>PRK06185 hypothetical protein; Provisional
Probab=88.80 E-value=0.42 Score=46.45 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||||.+|+=+|..|++.+.+|+++.+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999999875
No 408
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.80 E-value=0.43 Score=47.72 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|..|.-+|..|++.+.+|+++.++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 689999999999999999999999999999874
No 409
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=88.73 E-value=0.47 Score=45.92 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=31.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|..|+=+|..|++.+.+|+++.|++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 4799999999999999999999999999999873
No 410
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=88.67 E-value=1.8 Score=44.17 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE----EEEccCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~----V~~~~g~--~~~~d~vvvAtG~~~~ 108 (396)
.+..+...|.+.+.+.++. +.+++.|+++..++++.. +...+++ .+.+++||+|||.++.
T Consensus 127 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 127 TGHALLHTLYEQCLKLGVS--FFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred CHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 4567888888888888887 899999999877655432 1223554 4789999999999653
No 411
>PRK06126 hypothetical protein; Provisional
Probab=88.65 E-value=0.43 Score=48.45 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=31.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+=+|..|++.+-+|+++.|++
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999876
No 412
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=88.64 E-value=0.43 Score=47.28 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC------CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH------SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~------~~~V~l~~r~~ 169 (396)
|+|+|||||.||.=.|..|++. +.+|+++..++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~ 40 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE 40 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence 5799999999999999999875 25799998764
No 413
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.63 E-value=0.62 Score=40.22 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++++++|+|+ |..|.-++..+++.+.+|+++.|+.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 567899999996 9999999999998888999998763
No 414
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=88.62 E-value=0.4 Score=47.56 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=29.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|.+|++. +.+|+++.+..
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 699999999999999999997 78999999753
No 415
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=88.56 E-value=0.49 Score=45.80 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|..|+=+|..|++.+-+|+++.+++.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999999874
No 416
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.45 E-value=0.59 Score=46.73 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|..|.=.|..|++.+.+|+++.|..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 4689999999999999999999999999999764
No 417
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.45 E-value=0.58 Score=43.02 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
...+|+|+|+|+|..|.-++..|+..+ .+|+++.|+.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 467899999999999999999999876 8899999874
No 418
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.38 E-value=0.37 Score=38.89 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEecc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRR 168 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~ 168 (396)
+.++|+|+|.|..|.++|..|++. ..+++++...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 367999999999999999999986 4578888765
No 419
>PRK06175 L-aspartate oxidase; Provisional
Probab=88.38 E-value=2 Score=42.24 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCe-EEEE-EccCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-WEVE-LSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~-~~V~-~~~g~--~~~~d~vvvAtG~~~ 107 (396)
++.++.+-|.+.+.+ .++. |+++++|+++..++++ .-|. ..++. .+.++.||+|||.+.
T Consensus 126 ~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 126 TGKKVEKILLKKVKKRKNIT--IIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred ChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 356777777766654 5777 9999999998765442 2222 22343 478999999999854
No 420
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=88.36 E-value=0.46 Score=45.85 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||+|..|+=+|..|++.+.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 379999999999999999999999999999875
No 421
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=88.35 E-value=0.46 Score=39.00 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=28.9
Q ss_pred EEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|+|+|+|..|.=+|..|++.+.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999989999999874
No 422
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=88.32 E-value=0.43 Score=46.87 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=26.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|||||||.+|+=.|..+++.+.+|.|+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 48999999999999999999999999999876
No 423
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=88.29 E-value=1.8 Score=44.11 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.+..+...+...++.. ++. + ++++|+++..+++.. -|.+.+|..+.++.||+|||.+
T Consensus 98 Dr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 98 DRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 4567888888888765 554 4 678898887665543 4777888889999999999984
No 424
>KOG1298|consensus
Probab=88.19 E-value=0.6 Score=44.07 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=29.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|.-+|..|++.+++|+++.|.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4999999999999999999999999999996
No 425
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=88.18 E-value=1.9 Score=41.79 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~ 107 (396)
.+..+.++|...|+..|.. ++..++|..+..+++.+.+.+..+ .+++++.||.|+|..+
T Consensus 93 ~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 93 DRAKFDKWLAERAEEAGAE--LYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred EhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 5788999999999999988 999999999999876666655443 5689999999999843
No 426
>PRK07804 L-aspartate oxidase; Provisional
Probab=88.12 E-value=1.8 Score=43.88 Aligned_cols=60 Identities=7% Similarity=-0.044 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-C---eEEEE-----EccC-cEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-D---IWEVE-----LSNG-KKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~---~~~V~-----~~~g-~~~~~d~vvvAtG~~~~ 108 (396)
++.++.+-|.+.+++.++. +.+++.|+++..++ + +..+. ..++ ..+.+++||+|||.++.
T Consensus 142 ~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 142 TGAEVQRALDAAVRADPLD--IREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 5778999999999888877 88999999987653 2 23332 1223 24789999999999753
No 427
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=88.11 E-value=2.3 Score=43.52 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc--cCc-EEEcC-EEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS--NGK-KKKYD-FIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~--~g~-~~~~d-~vvvAtG~~~ 107 (396)
.++.++.+.|...+++.+++ |+++++|+++..++++.. |... ++. .+.++ .||+|||.+.
T Consensus 211 ~~G~~l~~~L~~~~~~~Gv~--i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 211 TSGNALAARLAKSALDLGIP--ILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred ccHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 35677888888889998987 999999999887655332 3332 333 35675 8999999954
No 428
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.07 E-value=0.49 Score=45.51 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||.+|.=+|..|++.+-+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 69999999999999999999999999999864
No 429
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=87.90 E-value=0.49 Score=46.75 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=0.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-.|..|++.+.+|+++.+++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
No 430
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.84 E-value=0.91 Score=38.93 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=26.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|.|||.|..|.-+|..+++.+.+|+.+...+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 379999999999999999999999999997653
No 431
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=87.77 E-value=0.52 Score=45.46 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||..|.=+|..|++.+-+|+++.+++
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 69999999999999999999999999999875
No 432
>KOG2404|consensus
Probab=87.71 E-value=1 Score=41.61 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEc--cCc--EEEcCEEEEcccCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS--NGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~--~g~--~~~~d~vvvAtG~~~~ 108 (396)
-..+...++..++..--.-.|..|++|++|.+.+++ .-|... +|+ ...++.||+|||.++.
T Consensus 142 ~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 142 VKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 344455555555544222247889999999976443 334443 343 3789999999999763
No 433
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=87.70 E-value=1.4 Score=46.52 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
.+.+++..+ |++|+.|++|++.+++|.|+ .+|+++.||+||+++=.
T Consensus 440 i~aLa~~L~----I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl 485 (808)
T PLN02328 440 VRELAKDLP----IFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTVPL 485 (808)
T ss_pred HHHHHhhCC----cccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECCCH
Confidence 344455443 89999999999988888874 46777999999999876
No 434
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.67 E-value=0.72 Score=40.95 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-C--cEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-E--KVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~--~V~l~~r~~ 169 (396)
.+++++|+|+|+|..|.-+|..|...+ + +++++.|++
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 578899999999999999999998864 4 699999875
No 435
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=87.66 E-value=0.52 Score=47.00 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
.|+|||||..|+-+|.+|++. +.+|+++.|..
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 589999999999999999996 78999999853
No 436
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=87.63 E-value=2 Score=41.80 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc---cCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS---NGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~---~g~--~~~~d~vvvAtG~~~~ 108 (396)
++..+.+-|.+.++..+++ |+++++|+++..++++.+ |... +++ .+.+++||+|||.+..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~--i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVD--IRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCee--eeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 5788999999999999977 999999999988765321 2222 344 4789999999999654
No 437
>PRK07538 hypothetical protein; Provisional
Probab=87.63 E-value=0.57 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.7
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||||.+|+=+|..|++.+-+|+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 699999999999999999999999999999763
No 438
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=87.62 E-value=0.63 Score=45.17 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.|+|||+|.+|.-+|..|++.+-+|.++.+++.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 699999999999999999999989999999764
No 439
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=87.38 E-value=0.48 Score=47.51 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.1
Q ss_pred EEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|+|||+|.+|.-+|..|++.+.+|+++.++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~ 31 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD 31 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 6899999999999999999999999999875
No 440
>PLN02576 protoporphyrinogen oxidase
Probab=87.38 E-value=0.62 Score=46.65 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
..+|+|||||.+|.=.|..|++. +.+|+++..++
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~ 46 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD 46 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 35799999999999999999998 78999999875
No 441
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=87.20 E-value=0.62 Score=48.09 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+..+|+|||||..|+=+|..|++.+-+|+++.|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45689999999999999999999999999999975
No 442
>PRK10015 oxidoreductase; Provisional
Probab=87.18 E-value=0.59 Score=45.92 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=30.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.|+|||+|.+|+=+|..|++.+.+|.++.|.+.
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 699999999999999999999999999998764
No 443
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.03 E-value=0.61 Score=42.44 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+++++|+|||.|-.|.++|..|++.+ .+++++....
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 457889999999999999999999986 7899998653
No 444
>PLN02487 zeta-carotene desaturase
Probab=87.03 E-value=0.74 Score=46.81 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 3599999999999999999999999999999865
No 445
>PRK11445 putative oxidoreductase; Provisional
Probab=86.95 E-value=0.67 Score=44.12 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=29.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||+|.+|+=+|..|++. .+|+++.|++.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 699999999999999999998 89999999864
No 446
>PRK07190 hypothetical protein; Provisional
Probab=86.95 E-value=0.66 Score=46.36 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=31.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
-.|+|||+|.+|+=+|..|++.+.+|.++.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 3799999999999999999999989999998863
No 447
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=86.73 E-value=0.67 Score=45.07 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=30.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+|+|||+|.+|+=+|..|++.+-+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999986
No 448
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.71 E-value=0.89 Score=41.89 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
..++|+|+|||+|-+|--++..|+.. .++|+++.|+.
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 35689999999999999999999887 46899998874
No 449
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=86.61 E-value=3.5 Score=42.09 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEe--CCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.+..+...++..+++. ++. .++.+|+.+..+ +....|.+.+|..+.+|.||+|||.+
T Consensus 94 Dr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 94 DKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred CHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 4678888999988887 443 356688887654 34466888888889999999999994
No 450
>PLN02985 squalene monooxygenase
Probab=86.54 E-value=0.69 Score=46.55 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|..|+=+|..|++.+.+|+++.|.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3479999999999999999999999999999975
No 451
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.54 E-value=2.6 Score=43.18 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC----CeE----EEEEccCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE----DIW----EVELSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~----~~~----~V~~~~g~--~~~~d~vvvAtG~~~ 107 (396)
++..+.+-|.+.+.+.+++ +..++.|+++..++ ++. .+...+++ .+.+++||+|||.++
T Consensus 138 tG~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVE--FFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4678999999999888887 89999999986543 332 11223454 478999999999975
No 452
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.50 E-value=1.8 Score=41.28 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|.|||+|..|.=.+.-+++.+++|+.+.-.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999987643
No 453
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.47 E-value=2.6 Score=38.62 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||.+ ..|-=+|..|.+....||+++.+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~ 191 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK 191 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999954 56888888888888889988654
No 454
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.47 E-value=0.89 Score=37.42 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
.++++|+|+|+|..|..++..+.+. ..+|+++.|++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 5688999999999999999999887 47888888764
No 455
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.40 E-value=1.8 Score=39.70 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||.+ ..|.=+|..|.+....||+++++.
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T 189 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT 189 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC
Confidence 5789999999955 568889999988888899887653
No 456
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=86.40 E-value=0.68 Score=47.06 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=31.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999999886
No 457
>PLN02529 lysine-specific histone demethylase 1
Probab=86.31 E-value=2.1 Score=44.91 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=31.5
Q ss_pred eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
|++|+.|++|+..+++|+|++ ++.++.||+||+++=.
T Consensus 369 IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPl 405 (738)
T PLN02529 369 IFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPL 405 (738)
T ss_pred EEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCH
Confidence 999999999999888898876 3456899999998754
No 458
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.30 E-value=1.2 Score=41.14 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++||+|+|||.| ..|.-+|..|.+.+..|++++|+.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 6789999999986 999999999999999999998764
No 459
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.28 E-value=1.8 Score=39.47 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||.+ ..|.=+|..|......|++++.+.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T 192 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT 192 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 6789999999954 568889998888778899887643
No 460
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=86.27 E-value=0.69 Score=45.54 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHHhc----CCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~----~~~~V~l~~r~~ 169 (396)
+|+|||||.+|+=+|..|++ .+-+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 59999999999999999998 688999999854
No 461
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.20 E-value=1.8 Score=39.56 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.+ ..|-=+|..|.+....||+++.+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~ 190 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR 190 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 6789999999965 55788888888887888888754
No 462
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.19 E-value=1.3 Score=41.55 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|.|||-|..|..+|..+...+-+|....|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 678999999999999999999998888888877664
No 463
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=86.12 E-value=0.77 Score=45.19 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=29.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.|||||+|.+|+=.|..+++.+ .+|.++.+.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~ 33 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMP 33 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence 4899999999999999999998 8999999865
No 464
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=86.08 E-value=0.83 Score=46.30 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
..+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 35799999999999999999999999999999863
No 465
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.05 E-value=0.79 Score=42.31 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|.|||+|..|..+|..++..+.+|++..+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 489999999999999999999999999999875
No 466
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=85.84 E-value=3.4 Score=42.75 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
++.++.+.|.+. .+. ..++++++|++++.+++.++|++.+|+++.+|.||.|-|.++
T Consensus 192 ~R~~L~~~L~~a---lg~-~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 192 SRMTLQQILARA---VGE-DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred eHHHHHHHHHhh---CCC-CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 577788877443 332 236889999999988888999998988899999999999976
No 467
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=85.84 E-value=2.5 Score=40.59 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
+...+..-|...+.+.+.. .+..++.|..++.+.+.|.|.+.+|+ +.+|.||+|+|.+.
T Consensus 154 ~p~~~~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 154 DPRLLTRALAAAAEELGVV-IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred CHHHHHHHHHHHHHhcCCe-EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 4467777777777777742 25668899888873267889998888 89999999999864
No 468
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=85.83 E-value=1.8 Score=40.82 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||. ...|.=+|..|.+....|++++.+
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~ 264 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR 264 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC
Confidence 568999999995 456888888888887888888764
No 469
>PLN02529 lysine-specific histone demethylase 1
Probab=85.74 E-value=0.81 Score=47.86 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.++|+|||+|.+|+.+|..|++.+.+|+++..+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 46789999999999999999999999999998864
No 470
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=85.72 E-value=0.93 Score=40.85 Aligned_cols=53 Identities=19% Similarity=0.460 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGA 105 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~ 105 (396)
|.-+.+.+||. . ++. |+++++|+.|.+.++.|++++++|. ...||.||||.=.
T Consensus 105 pgmsalak~LA---t--dL~--V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 105 PGMSALAKFLA---T--DLT--VVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cchHHHHHHHh---c--cch--hhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence 45566666552 2 344 8899999999999999999997654 5789999999765
No 471
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=85.67 E-value=3.6 Score=39.74 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE-eCCeEEEEE-ccCc--EEEcCEEEEcccCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YEDIWEVEL-SNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~-~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~ 108 (396)
..++.+-|...+...++. ++++++|++++. +++.-.|+. .+|+ ++++|.||-|-|.++.
T Consensus 102 ~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 102 QTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred cHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 445666666666666776 999999999986 444455665 3564 5789999999999774
No 472
>KOG1276|consensus
Probab=85.66 E-value=1 Score=43.12 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcE--EEEecc---Cceeec
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKV--YHSTRR---GYHYYP 174 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V--~l~~r~---~~~~~p 174 (396)
..+++|+|||||.||.-+|..|++..-++ +++.-+ +.|+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 45789999999999999999999985544 455543 457665
No 473
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.58 E-value=2.1 Score=39.10 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.+ ..|-=+|..|.+....||+++.+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~ 190 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK 190 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 5789999999955 56788898888888889988765
No 474
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.57 E-value=0.73 Score=44.50 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=29.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC---CCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~ 168 (396)
-+|+|||+|.+|.=+|..|++. +-+|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3699999999999999999997 8999999995
No 475
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.48 E-value=2.1 Score=39.30 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.+ ..|.=+|..|.+....||+++.+
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~ 192 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK 192 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 5789999999955 56788888888877888888754
No 476
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=85.46 E-value=0.75 Score=45.97 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~ 169 (396)
-.|+|||||.+|+-+|.+|++.. .+|+++.+..
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 47999999999999999999863 5899999874
No 477
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.45 E-value=1 Score=39.91 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++++|||+|..|..+|..|++.+.+|.++.+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999999999999999999875
No 478
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.45 E-value=1 Score=41.77 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+++|+|+|.|..|.-++..|...+.+|+++.|++
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4568999999999999999999999888999998874
No 479
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=85.45 E-value=1.1 Score=47.38 Aligned_cols=36 Identities=31% Similarity=0.262 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...++|+|||+|.+|.-+|..|++.+.+|+++..+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 456789999999999999999999988999998864
No 480
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=85.42 E-value=1.2 Score=44.82 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~ 169 (396)
....++|+|||||.+|.-.|..|++. +.+|+++.+.+
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~ 59 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD 59 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence 44568999999999999999999985 46899999875
No 481
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.42 E-value=0.87 Score=39.58 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~ 168 (396)
.++.++|+|||+|..|.++|..|++.+- +++++.+.
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3577899999999999999999999865 68888775
No 482
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=85.40 E-value=0.82 Score=45.40 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999989999999865
No 483
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=85.40 E-value=2.8 Score=42.77 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE----EEEccCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~----V~~~~g~--~~~~d~vvvAtG~~~~ 108 (396)
++..+..-|.+.+.+.++. |..++.|+++-.++++.. +...+|+ .+.+++||+|||.++.
T Consensus 117 ~G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 117 TGHAILHTLYQQNLKADTS--FFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred chHHHHHHHHHHHHhCCCE--EEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 5678999999999888887 889999999765544321 1223454 3679999999999753
No 484
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=85.37 E-value=4.6 Score=41.59 Aligned_cols=59 Identities=15% Similarity=0.036 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEE-E---EEccCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWE-V---ELSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~-V---~~~~g~--~~~~d~vvvAtG~~~ 107 (396)
.+..+.+-|...+++.+ +. ++++++|+++..++++.. | .+.+++ .+.+++||+|||.++
T Consensus 130 ~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 130 NGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred ChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 45677777877777664 76 899999999876544321 2 233453 478999999999865
No 485
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=85.34 E-value=0.78 Score=44.72 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=28.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.|+|||+|.+|+=.|..+++.+.+|.++...+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 489999999999999999999999999998764
No 486
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.33 E-value=0.96 Score=42.41 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|.|||+|..|..+|..++..+.+|++..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999998865
No 487
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=85.27 E-value=0.87 Score=47.11 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=0.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+=+|..|++. +-+|.++.+++
T Consensus 34 dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
No 488
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=85.16 E-value=0.79 Score=45.86 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=29.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
-.|+|||||.+|+-+|.+|++. +.+|+++.|..
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 3799999999999999999985 56899999864
No 489
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.12 E-value=2.4 Score=38.75 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||.+ ..|-=+|..|.+....|++++.+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~ 191 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF 191 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC
Confidence 5789999999955 56888999888887889888764
No 490
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.08 E-value=1.5 Score=42.79 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|....|.+
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 46899999999999999999999999888888887654
No 491
>PLN02976 amine oxidase
Probab=85.05 E-value=2.5 Score=47.26 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEe----------CCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQY----------EDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----------~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
.-++.+++.. . |+||+.|++|++. ++++.|++.+|+++.+|+||+++=.
T Consensus 937 qLIeALAe~L--~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPL 995 (1713)
T PLN02976 937 NVVESLAEGL--D--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPL 995 (1713)
T ss_pred HHHHHHHhhC--C--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCH
Confidence 3444445543 3 9999999999983 3578999999988999999998654
No 492
>PRK07121 hypothetical protein; Validated
Probab=85.04 E-value=3.7 Score=41.13 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe-EEEEEc-cCc--EEEc-CEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVELS-NGK--KKKY-DFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~-~~V~~~-~g~--~~~~-d~vvvAtG~~~ 107 (396)
.+..+.+.|...+++.++. |+++++|+++..+ +++ .-|... +++ .+.+ +.||+|||.+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 4677889999999998887 9999999998875 332 223332 232 3678 99999999865
No 493
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.03 E-value=2.3 Score=39.18 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.+ ..|.=+|..|.+....||+++.+
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~ 193 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA 193 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC
Confidence 6789999999955 56788888888888889888764
No 494
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=85.02 E-value=2.8 Score=41.75 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC--CeEE-E---EEccC---cEEEcCEEEEcccCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWE-V---ELSNG---KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~--~~~~-V---~~~~g---~~~~~d~vvvAtG~~~ 107 (396)
+.+.+-+.++.++.|.+ |+++++|++|+.++ ++|. | .+.+| +++.+|+||+|+..+.
T Consensus 219 ~~l~~pl~~~L~~~Gg~--i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 219 KYLTKPILEYIEARGGK--FHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred hhHHHHHHHHHHHCCCE--EECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence 33455566666667765 99999999999853 3442 3 34433 4588999999999754
No 495
>PLN02612 phytoene desaturase
Probab=84.93 E-value=1.3 Score=45.20 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
....+++|+|||+|.+|+-+|..|++.+.+|+++.++.
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 34567899999999999999999999988999998753
No 496
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=84.91 E-value=6.4 Score=38.19 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEc--c-----C--cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELS--N-----G--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~--~-----g--~~~~~d~vvvAtG~~~ 107 (396)
..++.+-++|.+.+.+.|.. ++.. +++++... ++.+.|+.. + | .++.+|.||.|+|.++
T Consensus 90 v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 90 LRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred eeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 57899999999999999986 6555 57777532 456777642 1 2 3589999999999954
No 497
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=84.76 E-value=1 Score=41.55 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=27.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~ 170 (396)
.++|||+|..|+=+|..|++.. .+|.++.+.+.
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 4899999999999999999986 58999998764
No 498
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=84.66 E-value=8.2 Score=38.03 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC--eEEEEEccCcEEEcCEEEEcccC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~--~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
..++.+-|.+.++.+|.. ++++++|.+|..+++ .+.|++.+|+++.+++||.....
T Consensus 231 ~g~L~qal~r~~a~~Gg~--~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGT--YMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHHHHcCcE--EEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 457888888888888876 999999999987643 36788889988999999886555
No 499
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=84.64 E-value=2.6 Score=38.94 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++.||+|+|||.+ ..|.=+|..|.+....||+++.+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~ 200 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR 200 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC
Confidence 6789999999955 56888999998888889988754
No 500
>PRK00536 speE spermidine synthase; Provisional
Probab=84.56 E-value=1.4 Score=39.98 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..|+|+|||||.-| +++|+++...+|+++.-.+
T Consensus 72 ~pk~VLIiGGGDGg--~~REvLkh~~~v~mVeID~ 104 (262)
T PRK00536 72 ELKEVLIVDGFDLE--LAHQLFKYDTHVDFVQADE 104 (262)
T ss_pred CCCeEEEEcCCchH--HHHHHHCcCCeeEEEECCH
Confidence 35899999999977 6899999877899987543
Done!