Query psy2343
Match_columns 396
No_of_seqs 252 out of 2618
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 22:35:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xve_A Flavin-containing monoo 100.0 5.8E-50 2E-54 393.8 24.3 321 1-394 39-386 (464)
2 2gv8_A Monooxygenase; FMO, FAD 100.0 5.7E-47 2E-51 371.5 24.4 314 1-394 39-409 (447)
3 3gwf_A Cyclohexanone monooxyge 100.0 1.9E-41 6.6E-46 338.1 24.2 336 1-343 40-456 (540)
4 3uox_A Otemo; baeyer-villiger 100.0 3.7E-40 1.3E-44 329.2 24.5 335 1-342 40-464 (545)
5 4ap3_A Steroid monooxygenase; 100.0 4.8E-40 1.6E-44 328.7 23.7 335 1-342 52-469 (549)
6 1w4x_A Phenylacetone monooxyge 100.0 8E-39 2.7E-43 320.6 25.2 336 1-343 47-465 (542)
7 4a9w_A Monooxygenase; baeyer-v 100.0 1.7E-37 5.7E-42 294.6 25.5 314 1-346 34-354 (357)
8 3d1c_A Flavin-containing putat 100.0 1.6E-30 5.5E-35 248.1 19.0 249 44-348 83-343 (369)
9 4b63_A L-ornithine N5 monooxyg 100.0 6.1E-30 2.1E-34 253.4 15.4 270 38-318 134-457 (501)
10 3lzw_A Ferredoxin--NADP reduct 100.0 2.1E-28 7.2E-33 229.7 17.2 260 1-344 38-315 (332)
11 2zbw_A Thioredoxin reductase; 100.0 1.1E-27 3.7E-32 225.5 17.1 238 47-344 63-317 (335)
12 3fbs_A Oxidoreductase; structu 99.9 4.4E-27 1.5E-31 217.2 19.2 233 45-344 52-292 (297)
13 3f8d_A Thioredoxin reductase ( 99.9 4.3E-27 1.5E-31 219.8 16.9 233 46-343 67-316 (323)
14 2q0l_A TRXR, thioredoxin reduc 99.9 8.7E-27 3E-31 217.0 18.6 233 45-343 55-308 (311)
15 2q7v_A Thioredoxin reductase; 99.9 1.5E-26 5.1E-31 216.9 19.8 234 45-344 61-312 (325)
16 3itj_A Thioredoxin reductase 1 99.9 8.5E-27 2.9E-31 219.3 16.0 236 44-344 79-335 (338)
17 3ab1_A Ferredoxin--NADP reduct 99.9 2.5E-26 8.5E-31 218.5 18.5 238 47-344 72-328 (360)
18 2a87_A TRXR, TR, thioredoxin r 99.9 1E-25 3.5E-30 212.2 18.7 232 46-343 68-315 (335)
19 3r9u_A Thioredoxin reductase; 99.9 1.7E-25 5.8E-30 208.3 17.3 233 45-343 58-311 (315)
20 1fl2_A Alkyl hydroperoxide red 99.9 1.2E-25 4.2E-30 209.1 15.8 233 45-343 52-304 (310)
21 1trb_A Thioredoxin reductase; 99.9 1.2E-25 4.2E-30 210.0 15.2 236 46-344 59-314 (320)
22 3cty_A Thioredoxin reductase; 99.9 6E-25 2.1E-29 205.4 17.5 231 46-343 69-315 (319)
23 1vdc_A NTR, NADPH dependent th 99.9 1.5E-24 5.3E-29 203.7 16.7 231 47-343 68-322 (333)
24 1hyu_A AHPF, alkyl hydroperoxi 99.9 4.1E-24 1.4E-28 212.7 20.4 232 46-343 264-515 (521)
25 3klj_A NAD(FAD)-dependent dehy 99.9 1.6E-26 5.3E-31 221.5 1.5 226 46-343 59-295 (385)
26 3ef6_A Toluene 1,2-dioxygenase 99.9 2.3E-24 7.8E-29 208.6 8.8 226 57-343 65-310 (410)
27 1xhc_A NADH oxidase /nitrite r 99.9 1.6E-24 5.5E-29 206.4 7.2 228 48-342 59-297 (367)
28 4a5l_A Thioredoxin reductase; 99.9 2.4E-23 8E-28 193.9 14.4 232 45-342 62-310 (314)
29 4eqs_A Coenzyme A disulfide re 99.9 2.4E-23 8.1E-28 202.8 13.7 229 57-344 65-313 (437)
30 3lxd_A FAD-dependent pyridine 99.9 6.9E-24 2.4E-28 205.6 8.4 234 48-343 64-322 (415)
31 2gqw_A Ferredoxin reductase; f 99.9 6.6E-24 2.3E-28 205.1 8.2 223 60-344 70-310 (408)
32 3ntd_A FAD-dependent pyridine 99.9 4.2E-24 1.4E-28 215.2 6.8 238 47-343 56-339 (565)
33 3ics_A Coenzyme A-disulfide re 99.9 1.1E-23 3.7E-28 213.1 9.8 236 47-341 91-352 (588)
34 2bc0_A NADH oxidase; flavoprot 99.9 3.8E-23 1.3E-27 204.5 13.4 228 56-343 99-362 (490)
35 3l8k_A Dihydrolipoyl dehydroge 99.9 6.1E-24 2.1E-28 208.9 7.6 211 71-342 108-333 (466)
36 3oc4_A Oxidoreductase, pyridin 99.9 9.3E-23 3.2E-27 199.8 15.7 234 50-343 59-315 (452)
37 3s5w_A L-ornithine 5-monooxyge 99.9 3E-23 1E-27 204.0 11.1 272 43-341 121-446 (463)
38 3iwa_A FAD-dependent pyridine 99.9 1.1E-23 3.9E-28 207.4 8.1 235 50-343 67-330 (472)
39 3fg2_P Putative rubredoxin red 99.9 4.8E-24 1.6E-28 205.9 5.2 228 53-343 61-311 (404)
40 4gcm_A TRXR, thioredoxin reduc 99.9 1.9E-22 6.4E-27 187.9 15.6 231 47-343 60-305 (312)
41 3kd9_A Coenzyme A disulfide re 99.9 4.3E-22 1.5E-26 194.9 17.8 237 46-343 55-316 (449)
42 1ebd_A E3BD, dihydrolipoamide 99.9 3.8E-22 1.3E-26 195.6 13.9 228 51-342 93-333 (455)
43 2cdu_A NADPH oxidase; flavoenz 99.9 9.6E-23 3.3E-27 199.7 9.3 230 54-343 63-318 (452)
44 3urh_A Dihydrolipoyl dehydroge 99.9 5.7E-23 2E-27 203.4 7.1 204 81-343 142-364 (491)
45 1dxl_A Dihydrolipoamide dehydr 99.9 5.8E-22 2E-26 195.1 14.2 229 51-342 98-342 (470)
46 1mo9_A ORF3; nucleotide bindin 99.9 4E-22 1.4E-26 198.6 12.7 239 39-342 113-378 (523)
47 1xdi_A RV3303C-LPDA; reductase 99.9 9.5E-22 3.3E-26 194.9 15.1 230 51-342 97-342 (499)
48 1zmd_A Dihydrolipoyl dehydroge 99.9 8.7E-22 3E-26 194.0 14.6 226 55-342 103-345 (474)
49 4fk1_A Putative thioredoxin re 99.9 1.7E-21 5.7E-26 180.8 15.6 230 47-343 58-299 (304)
50 2a8x_A Dihydrolipoyl dehydroge 99.9 3.4E-21 1.2E-25 189.3 18.4 227 51-341 93-333 (464)
51 1nhp_A NADH peroxidase; oxidor 99.9 2.9E-22 1E-26 196.0 10.6 233 49-342 56-316 (447)
52 3cgb_A Pyridine nucleotide-dis 99.9 3.5E-22 1.2E-26 197.1 11.0 229 54-342 98-353 (480)
53 1q1r_A Putidaredoxin reductase 99.9 1.1E-22 3.8E-27 197.9 6.7 226 57-343 68-320 (431)
54 2v3a_A Rubredoxin reductase; a 99.9 2.5E-22 8.6E-27 192.6 8.8 234 47-342 57-306 (384)
55 1v59_A Dihydrolipoamide dehydr 99.9 9.2E-22 3.1E-26 194.1 13.0 223 55-342 102-350 (478)
56 2hqm_A GR, grase, glutathione 99.9 6.6E-21 2.3E-25 187.9 18.9 222 57-343 113-348 (479)
57 2qae_A Lipoamide, dihydrolipoy 99.9 1.5E-21 5E-26 192.1 13.7 226 53-342 97-340 (468)
58 1onf_A GR, grase, glutathione 99.9 2.8E-21 9.5E-26 191.5 15.5 191 91-342 137-371 (500)
59 1ojt_A Surface protein; redox- 99.9 2.8E-21 9.4E-26 190.8 15.1 223 55-342 101-349 (482)
60 2wpf_A Trypanothione reductase 99.9 4.3E-21 1.5E-25 189.9 14.8 270 2-342 48-355 (495)
61 2vdc_G Glutamate synthase [NAD 99.9 4.1E-22 1.4E-26 194.6 6.8 242 48-343 171-443 (456)
62 2yqu_A 2-oxoglutarate dehydrog 99.8 3.1E-20 1.1E-24 182.0 19.3 224 55-342 95-327 (455)
63 3dgh_A TRXR-1, thioredoxin red 99.8 1E-21 3.5E-26 194.0 8.1 233 45-343 93-353 (483)
64 2r9z_A Glutathione amide reduc 99.8 4.6E-21 1.6E-25 188.2 12.7 216 59-342 102-327 (463)
65 3ic9_A Dihydrolipoamide dehydr 99.8 1.3E-21 4.6E-26 193.4 8.7 237 46-341 82-337 (492)
66 1ges_A Glutathione reductase; 99.8 2.8E-20 9.4E-25 182.0 17.5 216 59-342 103-328 (450)
67 1fec_A Trypanothione reductase 99.8 1.7E-20 5.7E-25 185.4 15.5 221 57-342 111-351 (490)
68 2eq6_A Pyruvate dehydrogenase 99.8 6.7E-21 2.3E-25 187.1 12.2 220 56-342 100-334 (464)
69 1lvl_A Dihydrolipoamide dehydr 99.8 6E-20 2E-24 180.0 18.9 220 55-342 102-330 (458)
70 3qfa_A Thioredoxin reductase 1 99.8 7.3E-21 2.5E-25 189.3 12.0 271 4-343 74-381 (519)
71 3dgz_A Thioredoxin reductase 2 99.8 1.5E-21 5E-26 193.0 6.6 272 2-343 46-353 (488)
72 3lad_A Dihydrolipoamide dehydr 99.8 4.2E-20 1.4E-24 182.1 17.0 205 81-343 126-344 (476)
73 4dna_A Probable glutathione re 99.8 2.4E-20 8.4E-25 183.1 14.5 225 51-343 95-332 (463)
74 1zk7_A HGII, reductase, mercur 99.8 8.8E-20 3E-24 179.3 18.3 208 73-342 116-334 (467)
75 3sx6_A Sulfide-quinone reducta 99.8 1.1E-20 3.9E-25 184.1 9.5 242 45-344 55-344 (437)
76 3dk9_A Grase, GR, glutathione 99.8 5.3E-20 1.8E-24 181.5 13.7 200 82-342 136-356 (478)
77 3h8l_A NADH oxidase; membrane 99.8 4.1E-21 1.4E-25 185.7 4.4 235 44-343 51-335 (409)
78 3o0h_A Glutathione reductase; 99.8 5.7E-19 2E-23 174.3 19.7 227 50-343 115-352 (484)
79 1lqt_A FPRA; NADP+ derivative, 99.8 2.2E-20 7.6E-25 182.5 8.6 254 43-343 55-386 (456)
80 2x8g_A Thioredoxin glutathione 99.8 1.8E-19 6E-24 182.6 14.3 234 46-342 192-459 (598)
81 1m6i_A Programmed cell death p 99.8 6.3E-21 2.2E-25 188.5 2.0 221 62-343 103-353 (493)
82 1cjc_A Protein (adrenodoxin re 99.8 1.3E-19 4.6E-24 177.2 7.3 116 43-171 53-201 (460)
83 4b1b_A TRXR, thioredoxin reduc 99.8 6.4E-18 2.2E-22 167.7 14.4 205 81-343 167-385 (542)
84 4g6h_A Rotenone-insensitive NA 99.7 3.9E-19 1.3E-23 175.7 3.7 220 71-347 115-404 (502)
85 1o94_A Tmadh, trimethylamine d 99.7 1.7E-18 5.8E-23 178.7 6.4 227 47-344 439-700 (729)
86 3k30_A Histamine dehydrogenase 99.7 2.7E-18 9.3E-23 176.4 7.1 222 44-344 438-675 (690)
87 3h28_A Sulfide-quinone reducta 99.7 3.1E-18 1.1E-22 166.5 3.3 236 48-344 55-333 (430)
88 2gag_A Heterotetrameric sarcos 99.7 3.8E-17 1.3E-21 173.2 9.5 227 48-346 180-446 (965)
89 1ps9_A 2,4-dienoyl-COA reducta 99.7 7.8E-17 2.7E-21 165.1 10.8 237 48-339 424-671 (671)
90 3vrd_B FCCB subunit, flavocyto 99.7 5.9E-16 2E-20 149.0 13.6 222 62-343 68-323 (401)
91 1gte_A Dihydropyrimidine dehyd 99.7 6.4E-17 2.2E-21 172.5 7.4 243 48-342 237-506 (1025)
92 1y56_A Hypothetical protein PH 99.6 2E-15 6.7E-20 149.2 9.9 188 68-347 177-380 (493)
93 3hyw_A Sulfide-quinone reducta 99.6 2.8E-16 9.7E-21 152.6 0.9 229 54-345 61-334 (430)
94 2ywl_A Thioredoxin reductase r 99.5 7.4E-14 2.5E-18 118.8 7.6 160 138-344 3-171 (180)
95 2cul_A Glucose-inhibited divis 99.1 2.3E-10 7.8E-15 101.3 8.3 175 137-343 4-231 (232)
96 2gqf_A Hypothetical protein HI 98.4 1.9E-07 6.4E-12 89.4 6.4 61 47-110 107-171 (401)
97 3hyw_A Sulfide-quinone reducta 98.1 1.9E-06 6.5E-11 83.2 5.7 105 137-284 3-112 (430)
98 2e5v_A L-aspartate oxidase; ar 98.1 3.7E-07 1.3E-11 89.3 0.6 119 47-175 117-247 (472)
99 1rp0_A ARA6, thiazole biosynth 98.0 1.4E-05 4.7E-10 72.6 7.7 33 137-169 40-73 (284)
100 3vrd_B FCCB subunit, flavocyto 97.9 1.6E-05 5.3E-10 75.9 7.7 108 135-286 1-113 (401)
101 3sx6_A Sulfide-quinone reducta 97.9 9E-06 3.1E-10 78.6 5.5 108 137-287 5-118 (437)
102 3h8l_A NADH oxidase; membrane 97.9 2.8E-05 9.5E-10 74.4 8.1 35 137-171 2-39 (409)
103 3fbs_A Oxidoreductase; structu 97.8 2.5E-05 8.5E-10 70.8 7.1 33 137-169 3-35 (297)
104 3h28_A Sulfide-quinone reducta 97.8 2.4E-05 8.1E-10 75.4 6.3 107 137-286 3-114 (430)
105 3f8d_A Thioredoxin reductase ( 97.7 2.6E-05 9E-10 71.5 5.6 32 137-168 16-47 (323)
106 3klj_A NAD(FAD)-dependent dehy 97.7 0.00011 3.9E-09 69.6 10.0 109 136-286 9-121 (385)
107 3lzw_A Ferredoxin--NADP reduct 97.7 8.9E-05 3.1E-09 68.3 8.4 33 137-169 8-40 (332)
108 2zbw_A Thioredoxin reductase; 97.7 7.3E-05 2.5E-09 69.1 7.8 33 137-169 6-38 (335)
109 3fg2_P Putative rubredoxin red 97.7 8.4E-05 2.9E-09 70.9 8.2 34 136-169 1-36 (404)
110 3ef6_A Toluene 1,2-dioxygenase 97.6 0.00011 3.7E-09 70.3 7.8 106 137-284 3-114 (410)
111 4a9w_A Monooxygenase; baeyer-v 97.5 8.8E-05 3E-09 69.0 5.8 33 137-169 4-36 (357)
112 4ap3_A Steroid monooxygenase; 97.5 0.00099 3.4E-08 66.1 13.4 33 137-169 22-54 (549)
113 1q1r_A Putidaredoxin reductase 97.5 0.00021 7.1E-09 68.8 7.9 110 136-286 4-119 (431)
114 3ab1_A Ferredoxin--NADP reduct 97.5 0.00042 1.4E-08 64.8 9.6 34 136-169 14-47 (360)
115 3lxd_A FAD-dependent pyridine 97.5 0.00028 9.6E-09 67.5 8.5 109 136-286 9-124 (415)
116 4g6h_A Rotenone-insensitive NA 97.5 0.00031 1E-08 69.0 8.9 35 137-171 43-77 (502)
117 3iwa_A FAD-dependent pyridine 97.5 0.00014 4.8E-09 70.9 6.5 35 136-170 3-39 (472)
118 3itj_A Thioredoxin reductase 1 97.4 0.00012 4E-09 67.7 5.4 34 136-169 22-55 (338)
119 1xhc_A NADH oxidase /nitrite r 97.4 0.00022 7.6E-09 67.1 7.3 35 135-170 7-41 (367)
120 3kd9_A Coenzyme A disulfide re 97.4 0.0001 3.6E-09 71.3 4.9 34 136-169 3-38 (449)
121 2q7v_A Thioredoxin reductase; 97.4 0.00024 8.3E-09 65.4 7.0 32 137-168 9-40 (325)
122 2gqw_A Ferredoxin reductase; f 97.4 0.00043 1.5E-08 66.1 8.7 106 136-286 7-118 (408)
123 3fpz_A Thiazole biosynthetic e 97.4 1.9E-06 6.6E-11 79.9 -7.7 74 94-169 141-216 (326)
124 4fk1_A Putative thioredoxin re 97.4 0.00046 1.6E-08 62.9 8.4 32 138-169 8-39 (304)
125 2ywl_A Thioredoxin reductase r 97.3 0.00037 1.3E-08 58.2 7.0 61 46-112 53-113 (180)
126 3v76_A Flavoprotein; structura 97.3 0.00042 1.4E-08 66.3 8.2 62 47-111 130-191 (417)
127 1fl2_A Alkyl hydroperoxide red 97.3 0.00027 9.1E-09 64.5 6.3 31 138-168 3-33 (310)
128 2q0l_A TRXR, thioredoxin reduc 97.3 0.00054 1.9E-08 62.5 8.2 31 138-168 3-34 (311)
129 2vou_A 2,6-dihydroxypyridine h 97.2 0.00041 1.4E-08 65.9 6.7 35 136-170 5-39 (397)
130 3ces_A MNMG, tRNA uridine 5-ca 97.2 0.00063 2.1E-08 68.2 8.1 98 47-167 122-221 (651)
131 3gwf_A Cyclohexanone monooxyge 97.2 0.002 6.7E-08 63.9 11.6 33 137-169 9-42 (540)
132 3r9u_A Thioredoxin reductase; 97.2 0.00021 7.1E-09 65.2 4.1 32 137-168 5-37 (315)
133 3dfz_A SIRC, precorrin-2 dehyd 97.2 0.00042 1.4E-08 60.0 5.7 36 133-168 28-63 (223)
134 3alj_A 2-methyl-3-hydroxypyrid 97.2 0.0011 3.8E-08 62.4 9.2 36 135-170 10-45 (379)
135 2bry_A NEDD9 interacting prote 97.2 0.00022 7.4E-09 70.1 4.3 73 95-170 37-126 (497)
136 2xdo_A TETX2 protein; tetracyc 97.1 0.0023 8E-08 60.6 10.8 34 136-169 26-59 (398)
137 2x3n_A Probable FAD-dependent 97.1 0.00062 2.1E-08 64.6 6.6 34 137-170 7-40 (399)
138 3uox_A Otemo; baeyer-villiger 97.1 0.0023 7.7E-08 63.5 10.7 33 137-169 10-42 (545)
139 4gcm_A TRXR, thioredoxin reduc 97.1 0.0025 8.7E-08 58.1 10.1 31 138-168 8-38 (312)
140 4a5l_A Thioredoxin reductase; 97.1 0.00083 2.8E-08 61.2 6.9 32 138-169 6-37 (314)
141 3ntd_A FAD-dependent pyridine 97.0 0.00088 3E-08 66.8 7.0 34 137-170 2-37 (565)
142 3l8k_A Dihydrolipoyl dehydroge 97.0 0.001 3.5E-08 64.6 7.3 32 138-169 6-37 (466)
143 2gv8_A Monooxygenase; FMO, FAD 97.0 0.002 7E-08 62.1 9.1 34 136-169 6-41 (447)
144 1hyu_A AHPF, alkyl hydroperoxi 97.0 0.00097 3.3E-08 65.8 6.8 33 136-168 212-244 (521)
145 2i0z_A NAD(FAD)-utilizing dehy 97.0 0.0017 5.9E-08 62.7 8.3 61 47-109 132-193 (447)
146 1vdc_A NTR, NADPH dependent th 97.0 0.0013 4.5E-08 60.5 7.2 31 137-167 9-39 (333)
147 2xve_A Flavin-containing monoo 97.0 0.0022 7.5E-08 62.2 9.0 33 137-169 3-41 (464)
148 3dje_A Fructosyl amine: oxygen 96.9 0.0018 6.3E-08 62.1 8.3 60 47-108 159-222 (438)
149 2a87_A TRXR, TR, thioredoxin r 96.9 0.0024 8.1E-08 58.9 8.5 33 136-168 14-46 (335)
150 3ps9_A TRNA 5-methylaminomethy 96.9 0.0022 7.6E-08 65.4 8.9 59 47-107 415-473 (676)
151 2uzz_A N-methyl-L-tryptophan o 96.9 0.0017 5.8E-08 60.8 7.3 63 48-113 148-210 (372)
152 3d1c_A Flavin-containing putat 96.9 0.0055 1.9E-07 57.1 10.7 33 137-169 5-38 (369)
153 1lvl_A Dihydrolipoamide dehydr 96.9 0.00094 3.2E-08 64.8 5.4 32 137-168 6-37 (458)
154 2zxi_A TRNA uridine 5-carboxym 96.8 0.0018 6.1E-08 64.7 7.3 98 47-167 121-220 (637)
155 1yvv_A Amine oxidase, flavin-c 96.8 0.0067 2.3E-07 55.7 10.6 33 137-169 3-35 (336)
156 3rp8_A Flavoprotein monooxygen 96.8 0.001 3.5E-08 63.3 5.0 35 135-169 22-56 (407)
157 2vdc_G Glutamate synthase [NAD 96.8 0.00028 9.7E-09 68.4 0.9 36 134-169 120-155 (456)
158 1w4x_A Phenylacetone monooxyge 96.8 0.0083 2.8E-07 59.4 11.6 33 137-169 17-49 (542)
159 3nyc_A D-arginine dehydrogenas 96.8 0.0013 4.6E-08 61.5 5.6 58 47-107 152-209 (381)
160 3v76_A Flavoprotein; structura 96.8 0.00055 1.9E-08 65.5 2.8 34 136-169 27-60 (417)
161 3ics_A Coenzyme A-disulfide re 96.7 0.002 6.8E-08 64.5 6.9 36 135-170 35-72 (588)
162 3nlc_A Uncharacterized protein 96.7 0.0011 3.8E-08 65.6 4.9 34 136-169 107-140 (549)
163 3cty_A Thioredoxin reductase; 96.7 0.0042 1.4E-07 56.7 8.4 32 137-168 17-48 (319)
164 1trb_A Thioredoxin reductase; 96.7 0.0016 5.6E-08 59.4 5.5 32 137-168 6-37 (320)
165 1lqt_A FPRA; NADP+ derivative, 96.7 0.00088 3E-08 64.9 3.6 34 136-169 3-43 (456)
166 3dme_A Conserved exported prot 96.7 0.0027 9.2E-08 59.1 6.8 59 47-107 148-209 (369)
167 2x3n_A Probable FAD-dependent 96.7 0.0023 7.9E-08 60.6 6.4 60 46-107 104-166 (399)
168 3dk9_A Grase, GR, glutathione 96.6 0.0017 5.7E-08 63.3 5.3 33 137-169 21-53 (478)
169 3pvc_A TRNA 5-methylaminomethy 96.6 0.0031 1E-07 64.5 7.4 59 47-107 410-469 (689)
170 2cul_A Glucose-inhibited divis 96.6 0.0042 1.5E-07 54.1 7.1 58 47-107 66-125 (232)
171 4hb9_A Similarities with proba 96.5 0.0034 1.2E-07 59.4 6.6 33 138-170 3-35 (412)
172 4eqs_A Coenzyme A disulfide re 96.5 0.0037 1.3E-07 60.2 6.8 32 138-169 2-35 (437)
173 3qj4_A Renalase; FAD/NAD(P)-bi 96.5 0.0018 6E-08 60.0 4.2 59 45-105 105-163 (342)
174 3s5w_A L-ornithine 5-monooxyge 96.5 0.0059 2E-07 59.0 8.1 81 62-146 329-419 (463)
175 1y56_B Sarcosine oxidase; dehy 96.5 0.0053 1.8E-07 57.6 7.5 59 46-107 146-205 (382)
176 1gte_A Dihydropyrimidine dehyd 96.4 0.00053 1.8E-08 73.2 -0.0 35 135-169 186-221 (1025)
177 3rp8_A Flavoprotein monooxygen 96.4 0.006 2E-07 57.9 7.3 58 46-107 124-181 (407)
178 3ihg_A RDME; flavoenzyme, anth 96.4 0.0083 2.8E-07 59.2 8.4 61 45-107 116-183 (535)
179 1cjc_A Protein (adrenodoxin re 96.3 0.00098 3.4E-08 64.7 1.6 34 136-169 6-41 (460)
180 2qa1_A PGAE, polyketide oxygen 96.3 0.0092 3.1E-07 58.4 8.5 60 46-107 103-165 (500)
181 3ces_A MNMG, tRNA uridine 5-ca 96.3 0.0037 1.3E-07 62.7 5.7 33 137-169 29-61 (651)
182 3nlc_A Uncharacterized protein 96.3 0.0073 2.5E-07 59.7 7.6 58 48-107 219-277 (549)
183 1ryi_A Glycine oxidase; flavop 96.3 0.004 1.4E-07 58.4 5.5 59 46-107 161-219 (382)
184 2gqf_A Hypothetical protein HI 96.3 0.00072 2.5E-08 64.4 0.3 33 137-169 5-37 (401)
185 3qj4_A Renalase; FAD/NAD(P)-bi 96.2 0.0077 2.6E-07 55.6 7.0 33 137-169 2-37 (342)
186 2v3a_A Rubredoxin reductase; a 96.2 0.0085 2.9E-07 56.4 7.4 60 48-111 186-245 (384)
187 2xdo_A TETX2 protein; tetracyc 96.2 0.0059 2E-07 57.8 6.2 59 46-108 125-183 (398)
188 2qa2_A CABE, polyketide oxygen 96.2 0.01 3.5E-07 58.1 7.9 60 46-107 104-166 (499)
189 2yqu_A 2-oxoglutarate dehydrog 96.2 0.0089 3E-07 57.7 7.4 62 48-113 207-268 (455)
190 2oln_A NIKD protein; flavoprot 96.2 0.011 3.7E-07 55.8 7.8 56 48-106 152-207 (397)
191 3alj_A 2-methyl-3-hydroxypyrid 96.1 0.0085 2.9E-07 56.3 6.9 57 46-107 104-160 (379)
192 2gf3_A MSOX, monomeric sarcosi 96.1 0.0087 3E-07 56.2 6.9 58 47-107 148-205 (389)
193 2vou_A 2,6-dihydroxypyridine h 96.1 0.013 4.6E-07 55.3 8.1 59 46-108 96-154 (397)
194 3cp8_A TRNA uridine 5-carboxym 96.1 0.0082 2.8E-07 60.1 6.7 99 47-167 115-215 (641)
195 2i0z_A NAD(FAD)-utilizing dehy 96.1 0.0078 2.7E-07 58.0 6.4 33 137-169 27-59 (447)
196 3k30_A Histamine dehydrogenase 96.1 0.0034 1.2E-07 64.1 4.1 35 135-169 390-424 (690)
197 3cgv_A Geranylgeranyl reductas 96.1 0.012 4E-07 55.4 7.5 60 46-107 99-162 (397)
198 3nix_A Flavoprotein/dehydrogen 96.0 0.016 5.5E-07 55.0 8.4 60 46-107 103-166 (421)
199 3qfa_A Thioredoxin reductase 1 96.0 0.012 4.3E-07 57.8 7.6 33 137-169 33-65 (519)
200 3fmw_A Oxygenase; mithramycin, 96.0 0.0089 3E-07 59.5 6.6 60 46-107 145-207 (570)
201 1k0i_A P-hydroxybenzoate hydro 96.0 0.012 4.2E-07 55.4 7.2 32 138-169 4-35 (394)
202 3k7m_X 6-hydroxy-L-nicotine ox 96.0 0.0055 1.9E-07 58.6 4.7 47 56-105 211-257 (431)
203 2vvm_A Monoamine oxidase N; FA 95.9 0.01 3.5E-07 57.9 6.5 57 49-107 255-312 (495)
204 2x8g_A Thioredoxin glutathione 95.9 0.0066 2.3E-07 60.9 5.2 32 136-167 107-138 (598)
205 1ps9_A 2,4-dienoyl-COA reducta 95.9 0.0045 1.5E-07 63.0 3.9 34 136-169 373-406 (671)
206 1o94_A Tmadh, trimethylamine d 95.9 0.0032 1.1E-07 64.7 2.8 35 135-169 388-422 (729)
207 3o0h_A Glutathione reductase; 95.8 0.014 4.7E-07 56.9 6.9 62 48-113 231-292 (484)
208 2r9z_A Glutathione amide reduc 95.8 0.019 6.6E-07 55.5 7.8 61 48-112 206-267 (463)
209 1xdi_A RV3303C-LPDA; reductase 95.8 0.015 5E-07 56.9 7.0 61 48-112 222-282 (499)
210 2eq6_A Pyruvate dehydrogenase 95.8 0.021 7.1E-07 55.3 7.9 62 48-113 209-275 (464)
211 1k0i_A P-hydroxybenzoate hydro 95.8 0.021 7.2E-07 53.7 7.8 60 47-108 101-164 (394)
212 1mo9_A ORF3; nucleotide bindin 95.7 0.016 5.5E-07 57.0 7.0 61 48-112 254-319 (523)
213 2bry_A NEDD9 interacting prote 95.7 0.0084 2.9E-07 58.7 4.9 62 46-109 163-232 (497)
214 1yvv_A Amine oxidase, flavin-c 95.7 0.0093 3.2E-07 54.7 4.9 54 50-107 108-162 (336)
215 3atr_A Conserved archaeal prot 95.7 0.031 1.1E-06 53.8 8.8 60 46-107 97-162 (453)
216 4dgk_A Phytoene dehydrogenase; 95.6 0.022 7.5E-07 55.5 7.7 56 49-106 221-277 (501)
217 3oc4_A Oxidoreductase, pyridin 95.6 0.026 9E-07 54.3 8.1 61 48-113 188-248 (452)
218 2gag_B Heterotetrameric sarcos 95.6 0.019 6.6E-07 54.1 6.9 59 46-107 171-230 (405)
219 1ges_A Glutathione reductase; 95.6 0.022 7.5E-07 54.9 7.2 60 49-112 208-268 (450)
220 2e4g_A Tryptophan halogenase; 95.6 0.029 9.9E-07 55.6 8.2 59 46-107 191-252 (550)
221 3e1t_A Halogenase; flavoprotei 95.5 0.034 1.2E-06 54.5 8.6 60 46-107 108-172 (512)
222 3ka7_A Oxidoreductase; structu 95.5 0.029 1E-06 53.2 8.0 56 49-107 196-252 (425)
223 1m6i_A Programmed cell death p 95.5 0.025 8.5E-07 55.2 7.4 60 49-112 226-285 (493)
224 2weu_A Tryptophan 5-halogenase 95.5 0.035 1.2E-06 54.3 8.4 59 46-107 170-230 (511)
225 1pjq_A CYSG, siroheme synthase 95.5 0.016 5.5E-07 56.0 5.7 36 133-168 9-44 (457)
226 3c96_A Flavin-containing monoo 95.4 0.032 1.1E-06 52.9 7.7 60 46-108 104-170 (410)
227 2r0c_A REBC; flavin adenine di 95.4 0.031 1.1E-06 55.3 7.8 57 46-107 135-196 (549)
228 1fec_A Trypanothione reductase 95.4 0.027 9.2E-07 54.9 7.1 60 49-112 231-291 (490)
229 2aqj_A Tryptophan halogenase, 95.3 0.038 1.3E-06 54.5 8.0 59 46-107 162-222 (538)
230 1qo8_A Flavocytochrome C3 fuma 95.3 0.041 1.4E-06 54.6 8.3 60 47-108 248-313 (566)
231 1ebd_A E3BD, dihydrolipoamide 95.3 0.034 1.2E-06 53.6 7.4 61 48-112 210-273 (455)
232 2wpf_A Trypanothione reductase 95.2 0.032 1.1E-06 54.5 7.2 60 49-112 235-295 (495)
233 1onf_A GR, grase, glutathione 95.2 0.05 1.7E-06 53.2 8.4 61 48-112 216-278 (500)
234 1s3e_A Amine oxidase [flavin-c 95.1 0.021 7.2E-07 56.0 5.6 52 54-107 217-268 (520)
235 3nrn_A Uncharacterized protein 95.1 0.027 9.4E-07 53.5 6.2 55 49-107 189-243 (421)
236 1y0p_A Fumarate reductase flav 95.1 0.052 1.8E-06 54.0 8.5 59 47-107 253-317 (571)
237 2qae_A Lipoamide, dihydrolipoy 95.1 0.039 1.3E-06 53.4 7.3 61 48-112 214-279 (468)
238 3axb_A Putative oxidoreductase 95.1 0.032 1.1E-06 53.5 6.7 59 46-107 178-254 (448)
239 2hqm_A GR, grase, glutathione 95.0 0.035 1.2E-06 53.9 6.8 59 49-111 226-287 (479)
240 3kkj_A Amine oxidase, flavin-c 95.0 0.013 4.4E-07 51.3 3.4 32 138-169 4-35 (336)
241 3i3l_A Alkylhalidase CMLS; fla 95.0 0.045 1.5E-06 54.7 7.5 60 46-107 125-188 (591)
242 1v59_A Dihydrolipoamide dehydr 95.0 0.039 1.3E-06 53.5 7.0 61 48-112 223-290 (478)
243 3fmw_A Oxygenase; mithramycin, 95.0 0.032 1.1E-06 55.5 6.3 34 137-170 50-83 (570)
244 3c4n_A Uncharacterized protein 94.9 0.011 3.8E-07 56.1 2.8 58 47-107 170-236 (405)
245 2g1u_A Hypothetical protein TM 94.9 0.022 7.5E-07 46.1 4.1 46 124-169 7-52 (155)
246 2pyx_A Tryptophan halogenase; 94.9 0.059 2E-06 53.0 8.0 59 46-107 172-233 (526)
247 2qcu_A Aerobic glycerol-3-phos 94.9 0.065 2.2E-06 52.3 8.2 59 47-107 147-210 (501)
248 2cdu_A NADPH oxidase; flavoenz 94.8 0.052 1.8E-06 52.2 7.4 61 48-112 190-250 (452)
249 2a8x_A Dihydrolipoyl dehydroge 94.8 0.054 1.8E-06 52.3 7.3 62 48-113 211-275 (464)
250 1zmd_A Dihydrolipoyl dehydroge 94.8 0.048 1.7E-06 52.8 7.0 61 48-112 219-285 (474)
251 3lad_A Dihydrolipoamide dehydr 94.8 0.057 2E-06 52.3 7.5 61 48-112 220-283 (476)
252 1kyq_A Met8P, siroheme biosynt 94.7 0.019 6.6E-07 51.1 3.6 36 133-168 10-45 (274)
253 3i6d_A Protoporphyrinogen oxid 94.7 0.045 1.5E-06 52.6 6.6 53 53-106 236-288 (470)
254 4dna_A Probable glutathione re 94.7 0.043 1.5E-06 53.0 6.4 61 48-113 210-272 (463)
255 3urh_A Dihydrolipoyl dehydroge 94.7 0.073 2.5E-06 51.8 8.1 62 48-113 238-304 (491)
256 1zk7_A HGII, reductase, mercur 94.7 0.06 2.1E-06 52.0 7.4 60 48-112 215-274 (467)
257 1ojt_A Surface protein; redox- 94.6 0.032 1.1E-06 54.2 5.2 61 48-112 225-289 (482)
258 1d4d_A Flavocytochrome C fumar 94.6 0.094 3.2E-06 52.1 8.6 59 47-107 253-317 (572)
259 4dgk_A Phytoene dehydrogenase; 94.6 0.015 5E-07 56.8 2.7 33 137-169 2-34 (501)
260 1dxl_A Dihydrolipoamide dehydr 94.6 0.055 1.9E-06 52.3 6.7 61 48-112 217-282 (470)
261 4b1b_A TRXR, thioredoxin reduc 94.4 0.081 2.8E-06 52.2 7.6 61 48-112 262-322 (542)
262 2b9w_A Putative aminooxidase; 94.4 0.06 2E-06 51.1 6.5 53 51-106 205-257 (424)
263 3lov_A Protoporphyrinogen oxid 94.3 0.048 1.6E-06 52.7 5.7 54 51-106 235-288 (475)
264 1nhp_A NADH peroxidase; oxidor 94.2 0.042 1.5E-06 52.7 5.0 62 48-114 190-251 (447)
265 3hwr_A 2-dehydropantoate 2-red 94.2 0.11 3.9E-06 47.3 7.6 45 124-169 7-51 (318)
266 1pj5_A N,N-dimethylglycine oxi 94.1 0.095 3.2E-06 54.6 7.8 58 47-107 149-207 (830)
267 2dkh_A 3-hydroxybenzoate hydro 94.1 0.12 4.1E-06 52.1 8.3 62 46-107 138-211 (639)
268 3nks_A Protoporphyrinogen oxid 94.0 0.048 1.7E-06 52.6 5.1 55 49-106 234-289 (477)
269 1b37_A Protein (polyamine oxid 94.0 0.061 2.1E-06 52.0 5.6 40 67-106 230-269 (472)
270 2jae_A L-amino acid oxidase; o 93.9 0.097 3.3E-06 50.7 7.1 52 54-106 241-295 (489)
271 2gmh_A Electron transfer flavo 93.9 0.14 4.9E-06 50.9 8.4 60 46-107 141-217 (584)
272 3ihm_A Styrene monooxygenase A 93.9 0.029 1E-06 53.7 3.2 34 136-169 22-55 (430)
273 2ivd_A PPO, PPOX, protoporphyr 93.8 0.052 1.8E-06 52.5 4.9 51 54-106 240-293 (478)
274 3dgh_A TRXR-1, thioredoxin red 93.8 0.13 4.5E-06 49.8 7.8 61 48-112 226-292 (483)
275 2yg5_A Putrescine oxidase; oxi 93.7 0.066 2.3E-06 51.3 5.3 50 55-107 218-268 (453)
276 4at0_A 3-ketosteroid-delta4-5a 93.6 0.15 5.3E-06 49.7 7.9 56 50-107 203-264 (510)
277 3p2o_A Bifunctional protein fo 93.6 0.11 3.8E-06 46.2 6.1 37 133-169 157-194 (285)
278 3cgb_A Pyridine nucleotide-dis 93.5 0.1 3.5E-06 50.6 6.4 60 48-112 226-285 (480)
279 3ic9_A Dihydrolipoamide dehydr 93.5 0.14 4.8E-06 49.8 7.3 61 48-113 214-278 (492)
280 1d5t_A Guanine nucleotide diss 93.4 0.11 3.8E-06 49.6 6.4 56 49-106 234-289 (433)
281 4a26_A Putative C-1-tetrahydro 93.4 0.15 5.2E-06 45.7 6.7 37 133-169 162-199 (300)
282 3da1_A Glycerol-3-phosphate de 93.3 0.17 5.8E-06 50.1 7.7 59 47-107 168-232 (561)
283 2bc0_A NADH oxidase; flavoprot 93.2 0.11 3.7E-06 50.6 5.9 60 48-112 235-294 (490)
284 3g5s_A Methylenetetrahydrofola 93.1 0.072 2.5E-06 50.0 4.2 34 137-170 2-35 (443)
285 3oz2_A Digeranylgeranylglycero 93.0 0.059 2E-06 50.2 3.6 33 138-170 6-38 (397)
286 3p1w_A Rabgdi protein; GDI RAB 92.9 0.21 7E-06 48.3 7.3 56 49-106 256-313 (475)
287 1rp0_A ARA6, thiazole biosynth 92.8 0.38 1.3E-05 42.9 8.6 57 47-105 117-189 (284)
288 3nrn_A Uncharacterized protein 92.8 0.066 2.3E-06 50.8 3.7 33 137-169 1-33 (421)
289 3ka7_A Oxidoreductase; structu 92.5 0.072 2.4E-06 50.5 3.4 33 137-169 1-33 (425)
290 1ryi_A Glycine oxidase; flavop 92.4 0.069 2.4E-06 49.8 3.3 33 137-169 18-50 (382)
291 2oln_A NIKD protein; flavoprot 92.3 0.088 3E-06 49.4 3.9 32 138-169 6-37 (397)
292 3dme_A Conserved exported prot 92.1 0.09 3.1E-06 48.5 3.6 33 137-169 5-37 (369)
293 2uzz_A N-methyl-L-tryptophan o 92.1 0.074 2.5E-06 49.4 3.1 32 138-169 4-35 (372)
294 1id1_A Putative potassium chan 92.1 0.13 4.4E-06 41.2 4.1 35 135-169 2-36 (153)
295 3nks_A Protoporphyrinogen oxid 92.0 0.092 3.1E-06 50.6 3.6 33 137-169 3-37 (477)
296 2gf3_A MSOX, monomeric sarcosi 91.9 0.096 3.3E-06 48.9 3.6 33 137-169 4-36 (389)
297 3nix_A Flavoprotein/dehydrogen 91.9 0.1 3.6E-06 49.3 3.8 33 137-169 6-38 (421)
298 2iid_A L-amino-acid oxidase; f 91.8 0.085 2.9E-06 51.3 3.1 34 136-169 33-66 (498)
299 3dgz_A Thioredoxin reductase 2 91.8 0.34 1.2E-05 47.0 7.4 62 48-113 224-291 (488)
300 3c4a_A Probable tryptophan hyd 91.7 0.087 3E-06 49.3 3.0 34 137-170 1-36 (381)
301 1rsg_A FMS1 protein; FAD bindi 91.7 0.24 8.2E-06 48.4 6.3 55 51-106 201-256 (516)
302 1c0p_A D-amino acid oxidase; a 91.7 0.13 4.4E-06 47.7 4.1 33 137-169 7-39 (363)
303 2b9w_A Putative aminooxidase; 91.6 0.11 3.9E-06 49.1 3.8 34 136-169 6-40 (424)
304 3ic5_A Putative saccharopine d 91.6 0.091 3.1E-06 39.7 2.5 35 135-169 4-39 (118)
305 1y56_B Sarcosine oxidase; dehy 91.6 0.097 3.3E-06 48.8 3.2 33 137-169 6-38 (382)
306 3nyc_A D-arginine dehydrogenas 91.4 0.11 3.8E-06 48.2 3.4 33 136-169 9-41 (381)
307 2rgh_A Alpha-glycerophosphate 91.4 0.35 1.2E-05 48.0 7.1 58 48-107 187-250 (571)
308 3cgv_A Geranylgeranyl reductas 91.4 0.12 4.1E-06 48.3 3.6 32 138-169 6-37 (397)
309 2raf_A Putative dinucleotide-b 91.4 0.14 4.6E-06 43.7 3.6 47 124-170 7-53 (209)
310 3c96_A Flavin-containing monoo 91.3 0.13 4.6E-06 48.5 3.9 34 137-170 5-39 (410)
311 4hb9_A Similarities with proba 91.3 0.31 1.1E-05 45.6 6.4 55 48-107 111-166 (412)
312 2e1m_A L-glutamate oxidase; L- 91.3 0.12 4.2E-06 48.3 3.5 34 135-168 43-76 (376)
313 2ivd_A PPO, PPOX, protoporphyr 91.2 0.12 4.1E-06 49.8 3.6 35 135-169 15-49 (478)
314 2jae_A L-amino acid oxidase; o 91.2 0.14 4.7E-06 49.7 3.9 35 135-169 10-44 (489)
315 4gut_A Lysine-specific histone 91.2 0.24 8.1E-06 51.1 5.8 41 63-105 543-583 (776)
316 2hmt_A YUAA protein; RCK, KTN, 91.2 0.14 4.8E-06 40.1 3.3 36 134-169 4-39 (144)
317 1lss_A TRK system potassium up 91.1 0.14 4.9E-06 39.9 3.3 34 136-169 4-37 (140)
318 2gag_B Heterotetrameric sarcos 91.1 0.11 3.8E-06 48.8 3.1 33 137-169 22-56 (405)
319 3k7m_X 6-hydroxy-L-nicotine ox 91.0 0.13 4.3E-06 48.9 3.4 32 138-169 3-34 (431)
320 3g3e_A D-amino-acid oxidase; F 90.9 0.1 3.5E-06 48.1 2.6 33 137-169 1-39 (351)
321 2iid_A L-amino-acid oxidase; f 90.7 0.33 1.1E-05 47.0 6.2 40 67-106 254-297 (498)
322 3atr_A Conserved archaeal prot 90.7 0.13 4.5E-06 49.3 3.2 32 138-169 8-39 (453)
323 4gde_A UDP-galactopyranose mut 90.6 0.14 4.7E-06 49.8 3.4 33 137-169 11-44 (513)
324 3llv_A Exopolyphosphatase-rela 90.6 0.17 5.7E-06 39.8 3.3 35 135-169 5-39 (141)
325 3axb_A Putative oxidoreductase 90.4 0.093 3.2E-06 50.2 1.9 32 136-167 23-55 (448)
326 2bi7_A UDP-galactopyranose mut 90.4 0.19 6.6E-06 47.1 4.0 33 137-169 4-36 (384)
327 3dje_A Fructosyl amine: oxygen 90.4 0.17 5.7E-06 48.2 3.6 33 137-169 7-40 (438)
328 2qcu_A Aerobic glycerol-3-phos 90.3 0.15 5.3E-06 49.6 3.3 33 137-169 4-36 (501)
329 1b0a_A Protein (fold bifunctio 90.2 0.36 1.2E-05 43.0 5.3 37 133-169 156-193 (288)
330 2wdq_A Succinate dehydrogenase 90.2 0.69 2.4E-05 46.0 8.0 58 48-107 142-206 (588)
331 2bcg_G Secretory pathway GDP d 90.2 0.42 1.4E-05 45.8 6.3 55 49-106 242-299 (453)
332 1kf6_A Fumarate reductase flav 90.1 0.52 1.8E-05 47.0 7.1 60 48-109 133-199 (602)
333 3i6d_A Protoporphyrinogen oxid 90.0 0.089 3E-06 50.5 1.3 33 137-169 6-44 (470)
334 1rsg_A FMS1 protein; FAD bindi 90.0 0.15 5.3E-06 49.8 3.1 34 136-169 8-42 (516)
335 3ps9_A TRNA 5-methylaminomethy 89.9 0.23 7.8E-06 50.4 4.4 33 136-168 272-304 (676)
336 3c4n_A Uncharacterized protein 89.9 0.16 5.4E-06 48.0 3.0 33 137-169 37-71 (405)
337 3pvc_A TRNA 5-methylaminomethy 89.9 0.28 9.7E-06 49.8 5.0 33 136-168 264-296 (689)
338 3e8x_A Putative NAD-dependent 89.9 0.23 8E-06 42.8 3.8 37 133-169 18-55 (236)
339 2rgh_A Alpha-glycerophosphate 89.8 0.17 5.9E-06 50.2 3.3 33 137-169 33-65 (571)
340 3da1_A Glycerol-3-phosphate de 89.8 0.23 7.8E-06 49.2 4.1 33 137-169 19-51 (561)
341 1s3e_A Amine oxidase [flavin-c 89.8 0.17 5.9E-06 49.4 3.3 33 137-169 5-37 (520)
342 3i3l_A Alkylhalidase CMLS; fla 89.7 0.24 8E-06 49.4 4.2 35 135-169 22-56 (591)
343 2c2x_A Methylenetetrahydrofola 89.7 0.38 1.3E-05 42.6 5.1 37 133-169 155-194 (281)
344 2bcg_G Secretory pathway GDP d 89.7 0.19 6.6E-06 48.3 3.5 33 137-169 12-44 (453)
345 2aqj_A Tryptophan halogenase, 89.6 0.22 7.6E-06 49.0 3.9 34 136-169 5-41 (538)
346 3cp8_A TRNA uridine 5-carboxym 89.6 0.21 7.3E-06 49.9 3.8 33 137-169 22-54 (641)
347 1sez_A Protoporphyrinogen oxid 89.6 0.23 8E-06 48.2 4.0 34 136-169 13-46 (504)
348 2zxi_A TRNA uridine 5-carboxym 89.6 0.2 6.7E-06 50.1 3.4 33 137-169 28-60 (637)
349 3hdq_A UDP-galactopyranose mut 89.5 0.22 7.6E-06 46.9 3.6 34 136-169 29-62 (397)
350 3c85_A Putative glutathione-re 89.5 0.2 7E-06 41.3 3.1 37 133-169 36-73 (183)
351 3lk7_A UDP-N-acetylmuramoylala 89.5 0.41 1.4E-05 45.9 5.6 38 132-169 5-42 (451)
352 3ihg_A RDME; flavoenzyme, anth 89.5 0.23 7.8E-06 48.8 3.9 34 137-170 6-39 (535)
353 3e1t_A Halogenase; flavoprotei 89.3 0.24 8.1E-06 48.4 3.8 33 137-169 8-40 (512)
354 2bs2_A Quinol-fumarate reducta 89.2 1 3.5E-05 45.4 8.5 58 48-107 157-220 (660)
355 1y0p_A Fumarate reductase flav 89.2 0.21 7E-06 49.6 3.3 33 137-169 127-159 (571)
356 1edz_A 5,10-methylenetetrahydr 89.1 0.45 1.5E-05 43.2 5.2 37 133-169 174-211 (320)
357 2qa2_A CABE, polyketide oxygen 89.0 0.26 9E-06 48.0 3.9 35 136-170 12-46 (499)
358 1a4i_A Methylenetetrahydrofola 89.0 0.44 1.5E-05 42.7 5.0 37 133-169 162-199 (301)
359 3fwz_A Inner membrane protein 89.0 0.26 8.8E-06 38.8 3.1 34 136-169 7-40 (140)
360 2h88_A Succinate dehydrogenase 88.9 1.1 3.8E-05 44.8 8.4 59 48-108 154-218 (621)
361 1i8t_A UDP-galactopyranose mut 88.8 0.27 9.3E-06 45.8 3.7 32 138-169 3-34 (367)
362 2r0c_A REBC; flavin adenine di 88.8 0.25 8.7E-06 48.7 3.6 34 137-170 27-60 (549)
363 2e4g_A Tryptophan halogenase; 88.7 0.3 1E-05 48.2 4.1 34 136-169 25-61 (550)
364 3l07_A Bifunctional protein fo 88.6 0.5 1.7E-05 42.0 5.0 37 133-169 158-195 (285)
365 2yg5_A Putrescine oxidase; oxi 88.5 0.28 9.5E-06 46.9 3.6 33 137-169 6-38 (453)
366 2qa1_A PGAE, polyketide oxygen 88.5 0.27 9.2E-06 47.9 3.5 34 137-170 12-45 (500)
367 4a5o_A Bifunctional protein fo 88.3 0.54 1.8E-05 41.8 5.0 37 133-169 158-195 (286)
368 1v0j_A UDP-galactopyranose mut 88.3 0.26 8.8E-06 46.5 3.2 34 136-169 7-41 (399)
369 3lov_A Protoporphyrinogen oxid 88.2 0.23 7.8E-06 47.8 2.8 34 136-169 4-39 (475)
370 1nyt_A Shikimate 5-dehydrogena 88.2 0.38 1.3E-05 42.7 4.0 37 133-169 116-152 (271)
371 2z3y_A Lysine-specific histone 88.2 0.3 1E-05 49.4 3.7 36 134-169 105-140 (662)
372 3fbt_A Chorismate mutase and s 88.1 0.58 2E-05 41.8 5.2 37 133-169 119-156 (282)
373 2weu_A Tryptophan 5-halogenase 88.0 0.21 7.2E-06 48.7 2.5 33 137-169 3-38 (511)
374 2vvm_A Monoamine oxidase N; FA 88.0 0.28 9.7E-06 47.5 3.4 34 136-169 39-72 (495)
375 2gjc_A Thiazole biosynthetic e 88.0 0.24 8.3E-06 45.2 2.7 32 138-169 67-100 (326)
376 1y56_A Hypothetical protein PH 88.0 0.43 1.5E-05 46.3 4.6 51 57-111 265-315 (493)
377 3jsk_A Cypbp37 protein; octame 88.0 0.26 9E-06 45.3 2.9 33 137-169 80-114 (344)
378 2x5o_A UDP-N-acetylmuramoylala 88.0 0.3 1E-05 46.7 3.4 37 133-169 2-38 (439)
379 1qo8_A Flavocytochrome C3 fuma 87.9 0.26 9E-06 48.8 3.1 33 137-169 122-154 (566)
380 2xag_A Lysine-specific histone 87.8 0.35 1.2E-05 50.3 4.0 35 135-169 277-311 (852)
381 1p77_A Shikimate 5-dehydrogena 87.5 0.38 1.3E-05 42.7 3.6 37 133-169 116-152 (272)
382 4at0_A 3-ketosteroid-delta4-5a 87.5 0.35 1.2E-05 47.2 3.6 32 138-169 43-74 (510)
383 4dsg_A UDP-galactopyranose mut 87.5 0.4 1.4E-05 46.5 4.0 34 136-169 9-43 (484)
384 3ngx_A Bifunctional protein fo 87.3 0.64 2.2E-05 41.1 4.8 36 134-169 148-184 (276)
385 3fpz_A Thiazole biosynthetic e 87.3 0.24 8.1E-06 45.2 2.2 35 135-169 64-100 (326)
386 3pwz_A Shikimate dehydrogenase 87.3 0.46 1.6E-05 42.2 4.0 37 133-169 117-154 (272)
387 3o8q_A Shikimate 5-dehydrogena 87.3 0.55 1.9E-05 41.9 4.5 37 133-169 123-160 (281)
388 3phh_A Shikimate dehydrogenase 87.2 0.44 1.5E-05 42.2 3.8 34 136-169 118-151 (269)
389 2dkh_A 3-hydroxybenzoate hydro 87.1 0.37 1.3E-05 48.5 3.7 33 137-169 33-66 (639)
390 2z3y_A Lysine-specific histone 87.0 0.64 2.2E-05 47.0 5.4 39 67-105 412-456 (662)
391 2pyx_A Tryptophan halogenase; 86.9 0.37 1.3E-05 47.2 3.5 34 136-169 7-52 (526)
392 3oj0_A Glutr, glutamyl-tRNA re 86.8 0.25 8.5E-06 39.1 1.8 34 136-169 21-54 (144)
393 3tnl_A Shikimate dehydrogenase 86.7 0.55 1.9E-05 42.6 4.2 38 132-169 150-188 (315)
394 3p1w_A Rabgdi protein; GDI RAB 86.6 0.43 1.5E-05 46.0 3.7 33 137-169 21-53 (475)
395 3d4o_A Dipicolinate synthase s 86.6 0.57 2E-05 42.0 4.3 38 132-169 151-188 (293)
396 1sez_A Protoporphyrinogen oxid 86.3 0.77 2.6E-05 44.4 5.4 51 54-105 245-306 (504)
397 2pzm_A Putative nucleotide sug 86.3 0.71 2.4E-05 42.0 4.9 40 130-169 14-54 (330)
398 1pj5_A N,N-dimethylglycine oxi 86.2 0.43 1.5E-05 49.7 3.7 33 137-169 5-38 (830)
399 2rir_A Dipicolinate synthase, 86.1 0.61 2.1E-05 42.0 4.3 38 132-169 153-190 (300)
400 3gpi_A NAD-dependent epimerase 86.1 0.58 2E-05 41.5 4.1 36 135-170 2-37 (286)
401 1nvt_A Shikimate 5'-dehydrogen 86.0 0.57 1.9E-05 41.9 3.9 36 133-169 125-160 (287)
402 3don_A Shikimate dehydrogenase 85.9 0.4 1.4E-05 42.7 2.8 37 133-169 114-151 (277)
403 2egg_A AROE, shikimate 5-dehyd 85.8 0.65 2.2E-05 41.8 4.3 37 133-169 138-175 (297)
404 2wdq_A Succinate dehydrogenase 85.8 0.51 1.7E-05 47.0 3.9 32 138-169 9-40 (588)
405 3t4e_A Quinate/shikimate dehyd 85.7 0.68 2.3E-05 42.0 4.3 38 132-169 144-182 (312)
406 1chu_A Protein (L-aspartate ox 85.7 0.6 2.1E-05 45.9 4.3 58 48-107 137-208 (540)
407 4gut_A Lysine-specific histone 85.5 0.44 1.5E-05 49.1 3.3 35 135-169 335-369 (776)
408 1leh_A Leucine dehydrogenase; 85.5 0.66 2.3E-05 43.0 4.2 36 133-168 170-205 (364)
409 1pn0_A Phenol 2-monooxygenase; 85.4 1.6 5.6E-05 44.0 7.4 60 46-107 116-230 (665)
410 3o38_A Short chain dehydrogena 85.3 1 3.5E-05 39.5 5.2 37 133-169 19-57 (266)
411 3jyo_A Quinate/shikimate dehyd 85.3 0.67 2.3E-05 41.4 4.0 37 133-169 124-161 (283)
412 3oz2_A Digeranylgeranylglycero 85.2 1.9 6.6E-05 39.6 7.4 60 46-107 99-162 (397)
413 1hdo_A Biliverdin IX beta redu 85.2 0.75 2.6E-05 38.2 4.1 34 136-169 3-37 (206)
414 3dtt_A NADP oxidoreductase; st 85.2 0.57 2E-05 40.8 3.5 38 132-169 15-52 (245)
415 1d4d_A Flavocytochrome C fumar 84.9 0.57 2E-05 46.4 3.7 34 136-169 126-159 (572)
416 2gmh_A Electron transfer flavo 84.5 0.45 1.5E-05 47.3 2.8 33 137-169 36-74 (584)
417 2e5v_A L-aspartate oxidase; ar 84.5 0.54 1.9E-05 45.4 3.2 31 138-168 1-31 (472)
418 2xag_A Lysine-specific histone 84.4 1 3.5E-05 46.8 5.5 38 68-105 584-627 (852)
419 1pn0_A Phenol 2-monooxygenase; 84.4 0.6 2E-05 47.2 3.6 32 138-169 10-46 (665)
420 1u7z_A Coenzyme A biosynthesis 84.2 0.87 3E-05 39.1 4.1 37 133-169 5-58 (226)
421 2h88_A Succinate dehydrogenase 84.2 0.68 2.3E-05 46.4 3.9 32 138-169 20-51 (621)
422 2gcg_A Glyoxylate reductase/hy 84.0 0.97 3.3E-05 41.3 4.6 38 132-169 151-188 (330)
423 1chu_A Protein (L-aspartate ox 83.9 0.57 1.9E-05 46.1 3.2 31 138-169 10-40 (540)
424 2bs2_A Quinol-fumarate reducta 83.9 0.63 2.1E-05 47.0 3.5 32 138-169 7-38 (660)
425 4id9_A Short-chain dehydrogena 83.9 0.69 2.4E-05 42.2 3.6 38 132-169 15-53 (347)
426 1jw9_B Molybdopterin biosynthe 83.6 0.35 1.2E-05 42.4 1.3 36 134-169 29-65 (249)
427 3hn2_A 2-dehydropantoate 2-red 83.5 0.94 3.2E-05 41.0 4.2 33 137-169 3-35 (312)
428 3ius_A Uncharacterized conserv 83.4 0.82 2.8E-05 40.4 3.8 33 137-169 6-38 (286)
429 1jnr_A Adenylylsulfate reducta 83.4 3.8 0.00013 41.1 9.0 63 48-112 150-223 (643)
430 1d5t_A Guanine nucleotide diss 83.4 0.7 2.4E-05 44.0 3.5 33 137-169 7-39 (433)
431 1o5i_A 3-oxoacyl-(acyl carrier 83.3 1 3.5E-05 39.1 4.3 41 129-169 12-53 (249)
432 3orq_A N5-carboxyaminoimidazol 83.3 1.3 4.5E-05 41.2 5.3 37 133-169 9-45 (377)
433 3ba1_A HPPR, hydroxyphenylpyru 83.2 0.99 3.4E-05 41.3 4.3 38 132-169 160-197 (333)
434 2d0i_A Dehydrogenase; structur 83.1 0.98 3.4E-05 41.4 4.2 38 132-169 142-179 (333)
435 3pp8_A Glyoxylate/hydroxypyruv 83.0 1.1 3.9E-05 40.6 4.5 38 132-169 135-172 (315)
436 2dbq_A Glyoxylate reductase; D 83.0 0.97 3.3E-05 41.4 4.2 38 132-169 146-183 (334)
437 4b4u_A Bifunctional protein fo 82.9 2.1 7.1E-05 38.3 6.0 37 133-169 176-213 (303)
438 4e12_A Diketoreductase; oxidor 82.8 0.82 2.8E-05 40.7 3.5 33 137-169 5-37 (283)
439 1lu9_A Methylene tetrahydromet 82.7 1.1 3.7E-05 40.0 4.3 37 133-169 116-153 (287)
440 3pl8_A Pyranose 2-oxidase; sub 82.6 0.75 2.6E-05 46.1 3.5 33 137-169 47-79 (623)
441 1b37_A Protein (polyamine oxid 82.5 0.74 2.5E-05 44.2 3.3 34 136-169 4-38 (472)
442 2pd4_A Enoyl-[acyl-carrier-pro 82.5 1.6 5.4E-05 38.5 5.2 36 134-169 4-42 (275)
443 1c1d_A L-phenylalanine dehydro 82.3 1.1 3.8E-05 41.3 4.2 35 133-167 172-206 (355)
444 3i83_A 2-dehydropantoate 2-red 82.2 0.93 3.2E-05 41.2 3.7 33 137-169 3-35 (320)
445 3evt_A Phosphoglycerate dehydr 82.2 1.4 4.6E-05 40.2 4.7 39 131-169 132-170 (324)
446 3n58_A Adenosylhomocysteinase; 82.1 0.9 3.1E-05 43.1 3.6 38 132-169 243-280 (464)
447 3ek2_A Enoyl-(acyl-carrier-pro 82.1 1.4 4.8E-05 38.5 4.8 39 131-169 9-50 (271)
448 3ond_A Adenosylhomocysteinase; 82.1 0.89 3E-05 43.7 3.6 37 133-169 262-298 (488)
449 2axq_A Saccharopine dehydrogen 81.8 1.1 3.6E-05 43.2 4.0 37 133-169 20-57 (467)
450 1qp8_A Formate dehydrogenase; 81.8 1.5 5E-05 39.6 4.7 37 133-169 121-157 (303)
451 1wwk_A Phosphoglycerate dehydr 81.7 1.2 4E-05 40.3 4.2 38 132-169 138-175 (307)
452 3jsk_A Cypbp37 protein; octame 81.6 1.3 4.6E-05 40.6 4.5 59 47-107 158-251 (344)
453 3nrc_A Enoyl-[acyl-carrier-pro 81.6 1.5 5E-05 38.9 4.7 37 133-169 23-62 (280)
454 2ekl_A D-3-phosphoglycerate de 81.6 1.2 4.1E-05 40.4 4.2 38 132-169 138-175 (313)
455 3gvp_A Adenosylhomocysteinase 81.5 0.98 3.4E-05 42.7 3.6 38 132-169 216-253 (435)
456 3h9u_A Adenosylhomocysteinase; 81.4 0.98 3.4E-05 42.7 3.6 38 132-169 207-244 (436)
457 1kf6_A Fumarate reductase flav 81.4 0.76 2.6E-05 45.9 3.0 32 138-169 7-40 (602)
458 3oig_A Enoyl-[acyl-carrier-pro 81.4 1.6 5.5E-05 38.1 4.9 37 133-169 4-43 (266)
459 3k31_A Enoyl-(acyl-carrier-pro 81.3 1.6 5.5E-05 39.0 4.9 38 132-169 26-66 (296)
460 2cuk_A Glycerate dehydrogenase 81.3 1.3 4.3E-05 40.2 4.2 38 132-169 140-177 (311)
461 2z1m_A GDP-D-mannose dehydrata 81.2 1.1 3.7E-05 40.7 3.8 35 135-169 2-37 (345)
462 2vhw_A Alanine dehydrogenase; 81.2 1.3 4.3E-05 41.4 4.2 37 133-169 165-201 (377)
463 3tum_A Shikimate dehydrogenase 81.1 1.3 4.3E-05 39.3 4.0 37 133-169 122-159 (269)
464 3ado_A Lambda-crystallin; L-gu 81.1 0.92 3.2E-05 41.2 3.2 34 136-169 6-39 (319)
465 3ojo_A CAP5O; rossmann fold, c 81.1 5 0.00017 38.0 8.4 35 135-169 10-44 (431)
466 1yxm_A Pecra, peroxisomal tran 81.1 1.7 5.7E-05 38.8 4.9 41 129-169 11-52 (303)
467 1zud_1 Adenylyltransferase THI 81.0 1.1 3.6E-05 39.3 3.5 35 134-168 26-61 (251)
468 1f0y_A HCDH, L-3-hydroxyacyl-C 81.0 1 3.6E-05 40.4 3.5 33 137-169 16-48 (302)
469 2gas_A Isoflavone reductase; N 80.9 1.4 4.8E-05 39.2 4.4 34 136-169 2-36 (307)
470 4fs3_A Enoyl-[acyl-carrier-pro 80.9 1.8 6.1E-05 37.8 4.9 37 133-169 3-42 (256)
471 1x13_A NAD(P) transhydrogenase 80.9 1 3.5E-05 42.4 3.5 36 134-169 170-205 (401)
472 3vps_A TUNA, NAD-dependent epi 80.8 1.2 4.1E-05 39.9 3.9 37 134-170 5-42 (321)
473 4dgs_A Dehydrogenase; structur 80.7 1.4 4.9E-05 40.3 4.4 38 132-169 167-204 (340)
474 2eez_A Alanine dehydrogenase; 80.7 1.3 4.4E-05 41.2 4.1 37 133-169 163-199 (369)
475 3p2y_A Alanine dehydrogenase/p 80.6 0.96 3.3E-05 42.1 3.2 36 134-169 182-217 (381)
476 1npy_A Hypothetical shikimate 80.6 1.6 5.5E-05 38.6 4.5 35 135-169 118-153 (271)
477 2hk9_A Shikimate dehydrogenase 80.6 0.8 2.7E-05 40.7 2.6 37 133-169 126-162 (275)
478 1jnr_A Adenylylsulfate reducta 80.5 1 3.4E-05 45.4 3.5 32 138-169 24-59 (643)
479 3hg7_A D-isomer specific 2-hyd 80.5 1.4 4.8E-05 40.1 4.2 38 132-169 136-173 (324)
480 1vl6_A Malate oxidoreductase; 80.3 1.1 3.8E-05 41.7 3.4 37 133-169 189-226 (388)
481 3q2o_A Phosphoribosylaminoimid 80.3 1.4 4.6E-05 41.2 4.2 37 133-169 11-47 (389)
482 2vns_A Metalloreductase steap3 80.3 1.3 4.3E-05 37.7 3.6 35 135-169 27-61 (215)
483 3l4b_C TRKA K+ channel protien 80.3 0.79 2.7E-05 38.9 2.4 32 138-169 2-33 (218)
484 4ffl_A PYLC; amino acid, biosy 80.2 1.3 4.3E-05 41.0 3.9 33 137-169 2-34 (363)
485 3d64_A Adenosylhomocysteinase; 80.1 1.2 4.2E-05 43.0 3.8 38 132-169 273-310 (494)
486 3gvx_A Glycerate dehydrogenase 79.8 1.2 4.3E-05 39.8 3.6 38 132-169 118-155 (290)
487 1gdh_A D-glycerate dehydrogena 79.7 1.6 5.6E-05 39.6 4.4 38 132-169 142-180 (320)
488 2w2k_A D-mandelate dehydrogena 79.7 1.6 5.6E-05 40.1 4.4 39 131-169 158-197 (348)
489 2z2v_A Hypothetical protein PH 79.6 1.3 4.5E-05 41.0 3.8 36 133-169 13-48 (365)
490 1cyd_A Carbonyl reductase; sho 79.6 1.7 5.7E-05 37.3 4.3 37 133-169 4-41 (244)
491 3ayj_A Pro-enzyme of L-phenyla 79.5 0.56 1.9E-05 47.6 1.3 34 136-169 56-97 (721)
492 2wyu_A Enoyl-[acyl carrier pro 79.4 1.7 5.7E-05 38.0 4.3 37 133-169 5-44 (261)
493 3d3w_A L-xylulose reductase; u 79.3 1.7 5.9E-05 37.3 4.3 37 133-169 4-41 (244)
494 4e5n_A Thermostable phosphite 79.1 1.6 5.4E-05 39.9 4.1 38 132-169 141-178 (330)
495 4g2n_A D-isomer specific 2-hyd 79.0 1.8 6E-05 39.8 4.4 38 132-169 169-206 (345)
496 4g65_A TRK system potassium up 79.0 3.8 0.00013 39.3 6.9 65 137-278 236-309 (461)
497 4gde_A UDP-galactopyranose mut 79.0 0.87 3E-05 44.0 2.5 53 49-105 222-274 (513)
498 2g76_A 3-PGDH, D-3-phosphoglyc 78.8 1.8 6.2E-05 39.6 4.4 38 132-169 161-198 (335)
499 4dsg_A UDP-galactopyranose mut 78.7 2.8 9.5E-05 40.4 6.0 52 51-105 215-268 (484)
500 3i1j_A Oxidoreductase, short c 78.7 1.8 6.2E-05 37.2 4.2 38 132-169 10-48 (247)
No 1
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=5.8e-50 Score=393.82 Aligned_cols=321 Identities=22% Similarity=0.354 Sum_probs=267.4
Q ss_pred CCCCccccccCCCC----------CCCCCCceeeecCCCccccCCCCCCCCC----CCCCChHHHHHHHHHHHHHcCCCC
Q psy2343 1 MESDLGGVWNSQAS----------CGRVYPSLHLISPKFNTQVPDYPMPDNY----PVYPNHSMMLDYLRSYAKKFDVYN 66 (396)
Q Consensus 1 ~~~~iGG~W~~~~~----------~~~~y~~~~~~~~~~~~~~~~~p~p~~~----~~~p~~~~~~~Yl~~~~~~~~l~~ 66 (396)
|++.+||+|.+... .+++|+++.+|.++.++.|++||+|... +.|+++.++.+|++++++++++.+
T Consensus 39 ~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~ 118 (464)
T 2xve_A 39 KQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRK 118 (464)
T ss_dssp SSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGG
T ss_pred cCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 45789999998532 3679999999999999999999987543 789999999999999999999988
Q ss_pred ceEeCcEEEEEEEeCC--eEEEEEcc---C--cEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCC
Q psy2343 67 HSIFNTEVINLEQYED--IWEVELSN---G--KKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNK 137 (396)
Q Consensus 67 ~i~~~t~V~~v~~~~~--~~~V~~~~---g--~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k 137 (396)
+|+|+++|++|++.++ .|+|++.+ | .++.||+||+|||+++.|++|.+|| .|.|.++|+++|++...+.+|
T Consensus 119 ~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k 198 (464)
T 2xve_A 119 YIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDK 198 (464)
T ss_dssp GEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTS
T ss_pred eEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCC
Confidence 8999999999998754 89999865 3 4589999999999888999999999 688999999999998888999
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDY 217 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (396)
+|+|||+|.||+|+|.+|++.+++|+++.|++... +. .
T Consensus 199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~-~~----------------~------------------------- 236 (464)
T 2xve_A 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM-GY----------------K------------------------- 236 (464)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC-CC----------------C-------------------------
T ss_pred EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC-CC----------------C-------------------------
Confidence 99999999999999999999999999999876210 00 0
Q ss_pred CCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCc-ccccccCC
Q psy2343 218 GLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK-EKLEWKLG 296 (396)
Q Consensus 218 ~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~-~~~~~~~~ 296 (396)
+ ..+|++.+.|+++++++|+|+||+++++|.||+||||+++++||+. ..+..+++
T Consensus 237 -~-----------------------~~~V~~~~~V~~i~~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~ 292 (464)
T 2xve_A 237 -W-----------------------PENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNR 292 (464)
T ss_dssp -C-----------------------CTTEEECSCEEEECSSEEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSS
T ss_pred -C-----------------------CCceEEcCCeEEEeCCEEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCC
Confidence 0 1256767889999999999999999999999999999999999986 34555544
Q ss_pred -cc-ccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC-ccCCCccccCCC
Q psy2343 297 -IP-DLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP-DLGQDYFIDSHR 373 (396)
Q Consensus 297 -~~-~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~-~~~~~~~~~~~~ 373 (396)
.+ .+|++++.++.|+|||+||+.. +..++.++.||+|+|++|.|..+||+. ++|++++++ ......|....|
T Consensus 293 ~~v~~~~~~~~~t~~p~i~aiGd~~~-~~~~~~a~~qa~~~a~~l~G~~~lP~~----~~m~~~~~~~~~~~~~~~~~~~ 367 (464)
T 2xve_A 293 LWPLNLYKGVVWEDNPKFFYIGMQDQ-WYSFNMFDAQAWYARDVIMGRLPLPSK----EEMKADSMAWREKELTLVTAEE 367 (464)
T ss_dssp SCCSSEETTTEESSSTTEEECSCSCC-SSCHHHHHHHHHHHHHHHTTSSCCCCH----HHHHHHHHHHHHHHHTCCSHHH
T ss_pred cccccccceEecCCCCCEEEEeCccc-ccchHHHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHHHhhccCCCCC
Confidence 44 7899999999999999999865 467899999999999999999999997 899877543 111112322233
Q ss_pred ceeeeeHHHHHHHHHHhcccc
Q psy2343 374 HLWEVDFWKFIKCARMYRDML 394 (396)
Q Consensus 374 ~~~~~~~~~y~~~l~~~~g~~ 394 (396)
+... +..|+|+|++++|+.
T Consensus 368 ~~~~--~~~Y~~~l~~~~g~~ 386 (464)
T 2xve_A 368 MYTY--QGDYIQNLIDMTDYP 386 (464)
T ss_dssp HHHH--HHHHHHHHHTTSSSC
T ss_pred cccc--HHHHHHHHHHHcCCC
Confidence 3211 468999999999985
No 2
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=100.00 E-value=5.7e-47 Score=371.50 Aligned_cols=314 Identities=21% Similarity=0.316 Sum_probs=264.4
Q ss_pred CCCCccccccCCCC----------------------------CCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHH
Q psy2343 1 MESDLGGVWNSQAS----------------------------CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMML 52 (396)
Q Consensus 1 ~~~~iGG~W~~~~~----------------------------~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~ 52 (396)
|++.+||+|.+... .+++|+.++.|.++.++.|+++|+|...+.|+++.++.
T Consensus 39 ~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (447)
T 2gv8_A 39 RRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQ 118 (447)
T ss_dssp SSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHH
T ss_pred cCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHH
Confidence 45689999988641 26789999999999999999999999989999999999
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc---EEEcCEEEEcccCCCCCCCCCCCC--C----ccc
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK---KKKYDFIAVCNGAQRVARYPNYSG--Y----FSG 120 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~---~~~~d~vvvAtG~~~~p~~P~~~g--~----~~g 120 (396)
+|+++++++++. .|+|+++|++|++.++.|+|++.+ |+ ++.||+||+|||+++.|++|.+|| . +.|
T Consensus 119 ~~l~~~~~~~~~--~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g 196 (447)
T 2gv8_A 119 EYQRIYAQPLLP--FIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPG 196 (447)
T ss_dssp HHHHHHHGGGGG--GEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTT
T ss_pred HHHHHHHHHhhC--eEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCc
Confidence 999999999865 499999999999988899999876 66 689999999999999999999999 3 367
Q ss_pred ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343 121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 199 (396)
Q Consensus 121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (396)
.++|+.+|+++..+++|+|+|||+|.||+|+|.+|++.+++ |+++.|++.+
T Consensus 197 ~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~---------------------------- 248 (447)
T 2gv8_A 197 SVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD---------------------------- 248 (447)
T ss_dssp SEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS----------------------------
T ss_pred cEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc----------------------------
Confidence 89999999999889999999999999999999999999998 9999997621
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceE--eCCeEEecCCcE-ecCcEEEEc
Q psy2343 200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL--NGNIVHFVDDTH-IEVDTIIYA 276 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i--~~~~v~~~dG~~-~~~D~VI~a 276 (396)
+...+|...+.|+++ ++.+|+|.||+. +++|.||+|
T Consensus 249 -----------------------------------------l~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~a 287 (447)
T 2gv8_A 249 -----------------------------------------IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 287 (447)
T ss_dssp -----------------------------------------CBCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred -----------------------------------------CCCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEEC
Confidence 122356667788888 456899999987 799999999
Q ss_pred cCCCCCCCC-----CCcc--cccccCCc-cccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCc
Q psy2343 277 TGYNRHFPF-----IDKE--KLEWKLGI-PDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKG 348 (396)
Q Consensus 277 TG~~~~~~~-----l~~~--~~~~~~~~-~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~ 348 (396)
|||+++++| |+.. .+..++.. ..+|++++.++.|+|||+|++... ..++.++.||+|+|++|.|..+||+.
T Consensus 288 tG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-~~~~~a~~qa~~~a~~~~g~~~lp~~ 366 (447)
T 2gv8_A 288 TGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-VPFPTSQAQAAFLARVWSGRLKLPSK 366 (447)
T ss_dssp CCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-CHHHHHHHHHHHHHHHHTTSSCCCCH
T ss_pred CCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-cCchHHHHHHHHHHHHHcCCCCCcCH
Confidence 999999999 8753 23333332 468999999999999999999765 47899999999999999999999997
Q ss_pred hhhHHHHhhcCCCc----cCCCccccCCCceee-eeHHHHHHHHHHhcccc
Q psy2343 349 YLKFLNAKKNDNPD----LGQDYFIDSHRHLWE-VDFWKFIKCARMYRDML 394 (396)
Q Consensus 349 ~~~~~~m~~~~~~~----~~~~~~~~~~~~~~~-~~~~~y~~~l~~~~g~~ 394 (396)
++|+++++++ ...++ ..|.+. .++..|+|+|++++|..
T Consensus 367 ----~~m~~~~~~~~~~~~~~~~----~~~~~~~~~~~~y~~~l~~~~~~~ 409 (447)
T 2gv8_A 367 ----EEQLKWQDELMFSLSGANN----MYHSLDYPKDATYINKLHDWCKQA 409 (447)
T ss_dssp ----HHHHHHHHHHHHHHTTCGG----GTTBCTTTHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHhcCCCc----ceeecCCccHHHHHHHHHHHhCcc
Confidence 9999986541 12211 115554 57889999999999875
No 3
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=100.00 E-value=1.9e-41 Score=338.06 Aligned_cols=336 Identities=20% Similarity=0.289 Sum_probs=269.9
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCC----CCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP----MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p----~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~ 76 (396)
|++.+||+|..+ .|+++.+++++..+.|+.-+ .+.+...|+++.++.+|++++++++++..+|+++++|++
T Consensus 40 ~~~~~GGtw~~~-----~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~ 114 (540)
T 3gwf_A 40 KADGPGGTWYWN-----RYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTS 114 (540)
T ss_dssp SSSSSCTHHHHC-----CCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEE
T ss_pred CCCCCCCccccc-----CCCCceecCCcceeeeccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEE
Confidence 467899999987 59999999999988887431 124445688899999999999999999778999999999
Q ss_pred EEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343 77 LEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152 (396)
Q Consensus 77 v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a 152 (396)
++.++ +.|+|++++|+++.||+||+|||.++.|+.|++|| .|.|..+|+..+.....+++|+|+|||+|.||+|+|
T Consensus 115 i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a 194 (540)
T 3gwf_A 115 ALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVI 194 (540)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHH
T ss_pred EEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHH
Confidence 99874 48999999998899999999999888999999999 799999999999988889999999999999999999
Q ss_pred HHHhcCCCcEEEEeccCceeecCCCCCCChhH--HHH-hhCcc-------------------------------------
Q psy2343 153 VDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ--WML-QLGNK------------------------------------- 192 (396)
Q Consensus 153 ~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~--~~~-~~p~~------------------------------------- 192 (396)
.+|++.+++|+++.|++.|++|.......... .+. .+|..
T Consensus 195 ~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~ 274 (540)
T 3gwf_A 195 TSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWD 274 (540)
T ss_dssp HHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHh
Confidence 99999999999999999999998765444321 111 11110
Q ss_pred ---------------ccCh---HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec----C
Q psy2343 193 ---------------FSSK---EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK----D 250 (396)
Q Consensus 193 ---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~----~ 250 (396)
+..+ .....+.+..++....+++....+.|. .++++++++++++++.+++++|++. .
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~-~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~ 353 (540)
T 3gwf_A 275 HGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPK-GLFAKRPLCDSGYYEVYNRPNVEAVAIKEN 353 (540)
T ss_dssp HCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC-SCCCSSCEEESSTGGGGGSTTEEEEETTTS
T ss_pred cccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC-CCCccccCCCccHHHHhcCCCEEEEeCCCC
Confidence 0000 001112222333344555555556788 9999999999999999999999976 6
Q ss_pred CcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCc------ccc----cccCCccccccccccCCCCcEEEE-eccc
Q psy2343 251 DIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK------EKL----EWKLGIPDLFIHIAPRNLDNIFFF-GFVN 319 (396)
Q Consensus 251 ~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~------~~~----~~~~~~~~l~~~~~~~~~p~l~~i-G~~~ 319 (396)
.|++|++++|+++||+.+++|+||+||||+++..++.. .+. .|. +++..|..+..+++||+|++ |...
T Consensus 354 ~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~g~~v~gfPN~f~~~Gp~~ 432 (540)
T 3gwf_A 354 PIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWD-GQPTSYLGVSTANFPNWFMVLGPNG 432 (540)
T ss_dssp CEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTS-SSCCCBTTTBCTTCTTEEESSCSSC
T ss_pred CccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCHHHhhc-cChhhccccccCCCCceEEEecCCC
Confidence 89999999999999999999999999999988644332 222 233 46789999999999999999 6544
Q ss_pred CcCchhhHHHHHHHHHHHHHhccc
Q psy2343 320 AAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 320 ~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+.++.+..+|.|++|+++.|....
T Consensus 433 ~~~s~~~~~e~q~~~i~~~i~~~~ 456 (540)
T 3gwf_A 433 PFTNLPPSIETQVEWISDTIGYAE 456 (540)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999886443
No 4
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=100.00 E-value=3.7e-40 Score=329.20 Aligned_cols=335 Identities=22% Similarity=0.325 Sum_probs=263.7
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCC----CCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPM----PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~----p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~ 76 (396)
|++.+||+|..+ +|+++.++++...++|+..|. +.+...|+++.++.+|++++++++++..+|+|+++|++
T Consensus 40 ~~~~~GGtw~~~-----~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~ 114 (545)
T 3uox_A 40 AGEDVGGTWYWN-----RYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTA 114 (545)
T ss_dssp SSSSSCTHHHHC-----CCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEE
T ss_pred CCCCCCCccccC-----CCCceeecCchhhcccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEE
Confidence 467899999987 799999999988888875443 24445688999999999999999999888999999999
Q ss_pred EEEe--CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCC-------CCCCCCeEEEEcCC
Q psy2343 77 LEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSP-------DQIRNKRVLVVGAG 145 (396)
Q Consensus 77 v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G 145 (396)
++.+ ++.|+|++++|+++.||+||+|||.++.|+.|++|| .|.|..+|+..+... .++++|+|+|||+|
T Consensus 115 ~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G 194 (545)
T 3uox_A 115 ARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTG 194 (545)
T ss_dssp EEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCS
T ss_pred EEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCC
Confidence 9987 468999999998899999999999877999999999 799999999998876 67899999999999
Q ss_pred CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHH--H-HhhCccc-----------------------------
Q psy2343 146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW--M-LQLGNKF----------------------------- 193 (396)
Q Consensus 146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~--~-~~~p~~~----------------------------- 193 (396)
.||+|+|.+|++.+++|+++.|++.|++|........... + ..+|..+
T Consensus 195 ~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~ 274 (545)
T 3uox_A 195 ATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDA 274 (545)
T ss_dssp HHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHH
T ss_pred ccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHH
Confidence 9999999999999999999999999999987544332211 1 0111100
Q ss_pred ----------------------cCh---HHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCccCchhhhcccCCCeE
Q psy2343 194 ----------------------SSK---EETMAYIKQVFKLAGFDGVDYGLKKP-DHPLDAAHPIMNSQILYHIGHGDIL 247 (396)
Q Consensus 194 ----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~i~~g~i~ 247 (396)
..+ .....+.+..++....+++....+.| .+.++++++++++++++.+++++|+
T Consensus 275 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~ 354 (545)
T 3uox_A 275 FFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVH 354 (545)
T ss_dssp HHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEE
T ss_pred HHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEE
Confidence 000 00111222222333344444445678 6999999999999999999999999
Q ss_pred ec----CCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc------cc----cccCCccccccccccCCCCcEE
Q psy2343 248 PK----DDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KL----EWKLGIPDLFIHIAPRNLDNIF 313 (396)
Q Consensus 248 ~~----~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~------~~----~~~~~~~~l~~~~~~~~~p~l~ 313 (396)
+. ..|++|++++|.+.|| .+++|+||+||||++...++... +. .|. +++..|..+..+++||+|
T Consensus 355 lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~g~~~~gfPN~f 432 (545)
T 3uox_A 355 LVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWA-EGPSTYLGLQARGFPNFF 432 (545)
T ss_dssp EEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCTTSEEECGGGCBHHHHTT-TSCCCBTTTBCTTCTTEE
T ss_pred EEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCCCceEECCCCccHHHhhc-cccceeeccccCCCCcEE
Confidence 76 6899999999999999 99999999999999865554322 21 133 357889999999999999
Q ss_pred EEecccC---cCchhhHHHHHHHHHHHHHhcc
Q psy2343 314 FFGFVNA---AAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 314 ~iG~~~~---~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
++..+++ .++....+|.|++|+++.|...
T Consensus 433 ~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~ 464 (545)
T 3uox_A 433 TLVGPHNGSTFCNVGVCGGLQAEWVLRMISYM 464 (545)
T ss_dssp ECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 9976653 2467789999999999988643
No 5
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=100.00 E-value=4.8e-40 Score=328.65 Aligned_cols=335 Identities=20% Similarity=0.279 Sum_probs=264.2
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCC----CCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP----MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p----~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~ 76 (396)
|++.+||+|..+ .|+++.+++++..+.|+.-+ .+.+...|+++.++.+|++++++++++..+++|+++|++
T Consensus 52 ~~~~~GGtw~~~-----~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~ 126 (549)
T 4ap3_A 52 AASGVGGVWYWN-----RYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTS 126 (549)
T ss_dssp SSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEE
T ss_pred CCCCCCCccccC-----CCCCceeCCCchhcccccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEE
Confidence 467899999977 59999999999999887432 234555788999999999999999999878999999999
Q ss_pred EEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHH
Q psy2343 77 LEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDI 151 (396)
Q Consensus 77 v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~ 151 (396)
++.++ +.|+|++++|+++.||+||+|||.++.|+.|++|| .|.|.++|+..+. +..++++|+|+|||+|.||+|+
T Consensus 127 i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~ 206 (549)
T 4ap3_A 127 AVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQS 206 (549)
T ss_dssp EEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHH
T ss_pred EEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHH
Confidence 99874 48999999998899999999999777999999999 7999999999998 6778899999999999999999
Q ss_pred HHHHhcCCCcEEEEeccCceeecCCCCCCChhHH--HH-hhCccc-----------------------------------
Q psy2343 152 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW--ML-QLGNKF----------------------------------- 193 (396)
Q Consensus 152 a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~--~~-~~p~~~----------------------------------- 193 (396)
|..|++.+++|+++.|++.|++|......+.... +. .+|...
T Consensus 207 a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~ 286 (549)
T 4ap3_A 207 IPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERW 286 (549)
T ss_dssp HHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999987544432211 11 111100
Q ss_pred ---------------cChH---HHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCcccCccCchhhhcccCCCeEec----C
Q psy2343 194 ---------------SSKE---ETMAYIKQVFKLAGFDGVDYGLKKPD-HPLDAAHPIMNSQILYHIGHGDILPK----D 250 (396)
Q Consensus 194 ---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~i~~g~i~~~----~ 250 (396)
.++. ....+.+..++....+++....+.|. +.++++++++++++++.+++++|++. .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~ 366 (549)
T 4ap3_A 287 KLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRST 366 (549)
T ss_dssp HHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTS
T ss_pred hhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCC
Confidence 0000 00011222222233343333445787 99999999999999999999999976 5
Q ss_pred CcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc------cc----cccCCccccccccccCCCCcEEEEecccC
Q psy2343 251 DIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KL----EWKLGIPDLFIHIAPRNLDNIFFFGFVNA 320 (396)
Q Consensus 251 ~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~------~~----~~~~~~~~l~~~~~~~~~p~l~~iG~~~~ 320 (396)
.|++|++++|.+.|| .+++|+||+||||+++..++... +. .|. +++..|..+..+++||+|++..+.+
T Consensus 367 ~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~g~~~~gfPN~f~~~Gp~~ 444 (549)
T 4ap3_A 367 PIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWA-AGPRTYLGLGIDGFPNFFNLTGPGS 444 (549)
T ss_dssp CEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGCBHHHHTT-TSCCCBTTTBCTTCTTEEETTCTTS
T ss_pred CceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEECCCCcCHHHhhc-cchhhccccccCCCCcEEEEeCCCC
Confidence 899999999999999 99999999999999876455432 11 133 3678999999999999999865543
Q ss_pred ---cCchhhHHHHHHHHHHHHHhcc
Q psy2343 321 ---AAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 321 ---~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.++....+|.|++|+++.|...
T Consensus 445 ~~~~~s~~~~~e~~~~~i~~~i~~~ 469 (549)
T 4ap3_A 445 PSVLANMVLHSELHVDWVADAIAYL 469 (549)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999988644
No 6
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=100.00 E-value=8e-39 Score=320.56 Aligned_cols=336 Identities=18% Similarity=0.315 Sum_probs=262.1
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCC----CCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPM----PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~----p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~ 76 (396)
|++.+||+|..+ +|+++.++++...+.|+..|. ..+...|+++.++.+|++++++++++..+|+|+++|++
T Consensus 47 ~~~~~GG~w~~~-----~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~ 121 (542)
T 1w4x_A 47 TAGDVGGVWYWN-----RYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTA 121 (542)
T ss_dssp SSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEE
T ss_pred CCCCCCCccccc-----CCCceeecccccccccccChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEE
Confidence 467899999877 699999999888887774331 12334688999999999999999998888999999999
Q ss_pred EEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHH
Q psy2343 77 LEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDI 151 (396)
Q Consensus 77 v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~ 151 (396)
++.++ +.|+|++++|+++.||+||+|||.++.|++|++|| .|.|.++|+..+. +..++++|+|+|||+|.||+|+
T Consensus 122 ~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~ 201 (542)
T 1w4x_A 122 AAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQV 201 (542)
T ss_dssp EEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHH
T ss_pred EEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHH
Confidence 99873 58999999998899999999999988999999999 6899999999988 5567899999999999999999
Q ss_pred HHHHhcCCCcEEEEeccCceeecCCCCCCChhHHH---HhhCc--------c------------cc--------------
Q psy2343 152 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWM---LQLGN--------K------------FS-------------- 194 (396)
Q Consensus 152 a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~---~~~p~--------~------------~~-------------- 194 (396)
|..+++.+++|+++.|++.|++|+........... ..+|. + +.
T Consensus 202 a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~ 281 (542)
T 1w4x_A 202 SPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYW 281 (542)
T ss_dssp HHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHH
Confidence 99999999999999999999888765433322110 00110 0 00
Q ss_pred ----------------Ch---HHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCccCchhhhcccCCCeEec----C
Q psy2343 195 ----------------SK---EETMAYIKQVFKLAGFDGVDYGLKKP-DHPLDAAHPIMNSQILYHIGHGDILPK----D 250 (396)
Q Consensus 195 ----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~i~~g~i~~~----~ 250 (396)
.. .....+.+..++....+++....+.| .+.++++++++++++++.+++++|++. .
T Consensus 282 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~ 361 (542)
T 1w4x_A 282 QEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSA 361 (542)
T ss_dssp HHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTS
T ss_pred hhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCC
Confidence 00 00011222222333344444445567 689999999999999999999999974 5
Q ss_pred CcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc------cc----cccCCccccccccccCCCCcEEEE-eccc
Q psy2343 251 DIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KL----EWKLGIPDLFIHIAPRNLDNIFFF-GFVN 319 (396)
Q Consensus 251 ~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~------~~----~~~~~~~~l~~~~~~~~~p~l~~i-G~~~ 319 (396)
.|+++++++|++.| +++++|+||+||||+++..++... +. .|. +.+..|..+..+++||+|++ |+..
T Consensus 362 ~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~~~~v~~~Pn~f~~~G~~~ 439 (542)
T 1w4x_A 362 PIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWA-AGPRTYLGLSTAGFPNLFFIAGPGS 439 (542)
T ss_dssp CEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTT-TSCCCBTTTBCTTSTTEEESSCTTS
T ss_pred CceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCCCHHHhhc-CchheecccccCCCCceEEEcCCCC
Confidence 89999999999999 889999999999999865544321 11 132 34678889999999999998 8774
Q ss_pred C--cCchhhHHHHHHHHHHHHHhccc
Q psy2343 320 A--AAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 320 ~--~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+ .++....+|.|++++|++|....
T Consensus 440 ~~~~~~~~~~~e~q~~~ia~~i~~~~ 465 (542)
T 1w4x_A 440 PSALSNMLVSIEQHVEWVTDHIAYMF 465 (542)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3 34566899999999999997654
No 7
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=1.7e-37 Score=294.62 Aligned_cols=314 Identities=20% Similarity=0.311 Sum_probs=250.5
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 80 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~ 80 (396)
|++.+||.|.+. |+++.++.+...+.+++++++.....|++++++.+|+.++++++++. ++++++|++++++
T Consensus 34 ~~~~~gg~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~ 105 (357)
T 4a9w_A 34 AEASPGGAWQHA------WHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHF 105 (357)
T ss_dssp CSSSSSGGGGGS------CTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEE
T ss_pred CCCCCCCcccCC------CCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEC
Confidence 457899999986 99999999999999999999988889999999999999999999998 9999999999999
Q ss_pred CCeEE-EEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 81 EDIWE-VELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 81 ~~~~~-V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
++.|. |++.++ ++.||+||+|||.++.|++|.++| .+.+..+|+..+.+...+++|+|+|||+|.+|+|+|..|++
T Consensus 106 ~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~ 184 (357)
T 4a9w_A 106 GERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVST 184 (357)
T ss_dssp TTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHh
Confidence 89999 998887 699999999999888999999999 78889999999999988999999999999999999999999
Q ss_pred CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343 158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237 (396)
Q Consensus 158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 237 (396)
.+ +|+++.|++.+++|....+.... .++.. .+.+.. ...+ .+........+.+.+.+
T Consensus 185 ~~-~v~~v~~~~~~~~~~~~~~~~~~-------~~~~~---------~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~ 241 (357)
T 4a9w_A 185 VA-ETTWITQHEPAFLADDVDGRVLF-------ERATE---------RWKAQQ-----EGRE-PDLPPGGFGDIVMVPPV 241 (357)
T ss_dssp TS-EEEEECSSCCCBCCTTCCTHHHH-------TC-------------------------------------CBCCCHHH
T ss_pred hC-CEEEEECCCCeecchhhcCccHH-------HHHHH---------HHhccc-----cccC-CCcccccccCcccChhH
Confidence 88 59999998766666543322111 00000 000000 0000 00111112345667778
Q ss_pred hhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcccccccCCccccccc-cccCCCCcEEEEe
Q psy2343 238 LYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH-IAPRNLDNIFFFG 316 (396)
Q Consensus 238 ~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~p~l~~iG 316 (396)
...+..|.+.....+++++.++|.+.||+++++|.||+|||++++.+|++...+..+++.+.+.+. ++.++.|+||++|
T Consensus 242 ~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vya~G 321 (357)
T 4a9w_A 242 LDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321 (357)
T ss_dssp HHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEEECS
T ss_pred HHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCeEEec
Confidence 888888888888899999999999999999999999999999999999987777655566777766 5789999999999
Q ss_pred --cccC-cCchhhHHHHHHHHHHHHHhccccCC
Q psy2343 317 --FVNA-AAGLGDGLRLQGQFIRSYIQAFIRKS 346 (396)
Q Consensus 317 --~~~~-~~~~~~~ae~qa~~~a~~l~~~~~lp 346 (396)
|+.. .......+..||+.+|..+...++.|
T Consensus 322 d~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g~ 354 (357)
T 4a9w_A 322 YGDWNGMASATLIGVTRYAREAVRQVTAYCADH 354 (357)
T ss_dssp SCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC--
T ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 5543 33456678999999999998877654
No 8
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=99.97 E-value=1.6e-30 Score=248.09 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=184.4
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 123 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~ 123 (396)
.++++.++.+|++++++++++. ++++++|++|+++++.|.|++.++. +.||+||+|||++..|.+ |+ +.++
T Consensus 83 ~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~p~i---p~---~~~~ 153 (369)
T 3d1c_A 83 EHISGETYAEYLQVVANHYELN--IFENTVVTNISADDAYYTIATTTET-YHADYIFVATGDYNFPKK---PF---KYGI 153 (369)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSSEEEEESSCC-EEEEEEEECCCSTTSBCC---CS---SSCE
T ss_pred cCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECCCeEEEEeCCCE-EEeCEEEECCCCCCccCC---CC---Ccee
Confidence 4678899999999999999987 8999999999987778999988774 899999999999655544 44 5678
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|+..+.+...+++|+|+|||+|.+|+|+|..|++.+.+|+++.|++.+..|....... +|. ..
T Consensus 154 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~-------~~~---------~~- 216 (369)
T 3d1c_A 154 HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVR-------LSP---------YT- 216 (369)
T ss_dssp EGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTS-------CCH---------HH-
T ss_pred chhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcc-------CCH---------HH-
Confidence 9988888777889999999999999999999999999999999987543222110000 000 00
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC-CeEec--CCcceE--eCC--eEEecCCcEec-CcEEEE
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPK--DDIKNL--NGN--IVHFVDDTHIE-VDTIIY 275 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g-~i~~~--~~i~~i--~~~--~v~~~dG~~~~-~D~VI~ 275 (396)
...+.+.+.+. +|++. ..|.++ +++ .|.+.||+.+. +|.||+
T Consensus 217 ------------------------------~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~ 266 (369)
T 3d1c_A 217 ------------------------------RQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPIL 266 (369)
T ss_dssp ------------------------------HHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEE
T ss_pred ------------------------------HHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEE
Confidence 11122223333 36653 467777 444 47788998764 699999
Q ss_pred ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----chhhHHHHHHHHHHHHHhccccCCCc
Q psy2343 276 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFIRKSKG 348 (396)
Q Consensus 276 aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----~~~~~ae~qa~~~a~~l~~~~~lp~~ 348 (396)
|||++++.+++....+..+++.+.+++..+.++.|+||++||+.... +.+..++.||+++|++|.+..++|+.
T Consensus 267 a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~ 343 (369)
T 3d1c_A 267 ATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAK 343 (369)
T ss_dssp CCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCC
T ss_pred eeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCc
Confidence 99999998666544444344557777777889999999999986531 23456889999999999999999997
No 9
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.96 E-value=6.1e-30 Score=253.42 Aligned_cols=270 Identities=16% Similarity=0.140 Sum_probs=164.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC--------CeEEEEEccC-----cEEEcCEEEEccc
Q psy2343 38 MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--------DIWEVELSNG-----KKKKYDFIAVCNG 104 (396)
Q Consensus 38 ~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~--------~~~~V~~~~g-----~~~~~d~vvvAtG 104 (396)
++.+...||++.|+.+||+++|++|+. +|+|+++|++|++.+ +.|+|++.++ .++.+++||+|||
T Consensus 134 f~~~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG 211 (501)
T 4b63_A 134 FTNLSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIG 211 (501)
T ss_dssp HHTTCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCC
T ss_pred CccccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcC
Confidence 344556799999999999999999874 499999999999862 3699998764 2578999999999
Q ss_pred CCCCCCCCCCCCCcccceeecccCCC------CCCCCCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCC
Q psy2343 105 AQRVARYPNYSGYFSGEILHSMDYKS------PDQIRNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKF 176 (396)
Q Consensus 105 ~~~~p~~P~~~g~~~g~~~hs~~~~~------~~~~~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~ 176 (396)
. .|++|.++ .|.|+++|+.+|.. ...++||+|+|||+|+||+|++.+|++. +.+|++++|++.+. |..
T Consensus 212 ~--~P~iP~~~-~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~-p~~ 287 (501)
T 4b63_A 212 G--TAKMPSGL-PQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMR-PSD 287 (501)
T ss_dssp C--EECCCTTS-CCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCC-BCC
T ss_pred C--CCCCCCCC-CCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccc-ccc
Confidence 7 78877655 46789999999975 5578999999999999999999999874 67899999998654 443
Q ss_pred CCCCChhHH-------HHhhCcccc---------------ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccC
Q psy2343 177 IDGKPTPQW-------MLQLGNKFS---------------SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMN 234 (396)
Q Consensus 177 ~~~~~~~~~-------~~~~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 234 (396)
......+.+ +..+|...+ +......+.+.+.+.....+.... +.+.+......
T Consensus 288 ~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~---~~~~l~~~~~v-- 362 (501)
T 4b63_A 288 DSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ---WQHRILPERKI-- 362 (501)
T ss_dssp CCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGG---CSSEEECSEEE--
T ss_pred ccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccc---cceeecCCcce--
Confidence 222211110 111221111 111111222222222111111000 00111100000
Q ss_pred chhhhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCC-CCCccc--ccc-cCCcccccccc---c--
Q psy2343 235 SQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP-FIDKEK--LEW-KLGIPDLFIHI---A-- 305 (396)
Q Consensus 235 ~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~-~l~~~~--~~~-~~~~~~l~~~~---~-- 305 (396)
.........+++++...+.+++++++.+.||+++++|+||+||||+++.| +|.... +.. ..+.+.+.++. +
T Consensus 363 ~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~ 442 (501)
T 4b63_A 363 TRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDP 442 (501)
T ss_dssp EEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCT
T ss_pred eeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecC
Confidence 01112233456666666777888899999999999999999999999875 433221 222 22344433221 1
Q ss_pred --cCCCCcEEEEecc
Q psy2343 306 --PRNLDNIFFFGFV 318 (396)
Q Consensus 306 --~~~~p~l~~iG~~ 318 (396)
....++||..|..
T Consensus 443 ~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 443 SKVSSEAGIWLQGCN 457 (501)
T ss_dssp TTBCTTCEEEECSCC
T ss_pred CccCCCceEEecCCC
Confidence 1235779999864
No 10
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=99.96 E-value=2.1e-28 Score=229.74 Aligned_cols=260 Identities=16% Similarity=0.201 Sum_probs=196.3
Q ss_pred CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343 1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 80 (396)
Q Consensus 1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~ 80 (396)
|++.+||.|.+. |++..+. .++++| ..+.+++.+|+.++++++++. ++++++|++++..
T Consensus 38 ~~~~~gG~~~~~------~~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~ 96 (332)
T 3lzw_A 38 SLPQLGGQLSAL------YPEKYIY------DVAGFP-------KIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQ 96 (332)
T ss_dssp SSSSSCHHHHHH------CTTSEEC------CSTTCS-------SEEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEEC
T ss_pred cCCCCCceehhc------CCCceEe------ccCCCC-------CCCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEEC
Confidence 456789999654 5554431 122221 125789999999999999876 8899999999998
Q ss_pred CC-eEEEEEccCcEEEcCEEEEcccCCC-CCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHh
Q psy2343 81 ED-IWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 156 (396)
Q Consensus 81 ~~-~~~V~~~~g~~~~~d~vvvAtG~~~-~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~ 156 (396)
++ .|.|++.+++ +.||+||+|||..+ .|+.|.++| .|.+..+|+ .+.+...+++++|+|||+|.+|+|+|..|+
T Consensus 97 ~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~ 174 (332)
T 3lzw_A 97 ADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLE 174 (332)
T ss_dssp TTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHT
T ss_pred CCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHH
Confidence 55 8999998887 89999999999954 788899999 577878888 777777888999999999999999999999
Q ss_pred cCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch
Q psy2343 157 HHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ 236 (396)
Q Consensus 157 ~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (396)
+.+.+|+++.|.+.. .+ .+ ...
T Consensus 175 ~~~~~v~~~~~~~~~-~~-------~~-----------------~~~--------------------------------- 196 (332)
T 3lzw_A 175 PIAKEVSIIHRRDKF-RA-------HE-----------------HSV--------------------------------- 196 (332)
T ss_dssp TTBSEEEEECSSSSC-SS-------CH-----------------HHH---------------------------------
T ss_pred hhCCeEEEEEecCcC-Cc-------cH-----------------HHH---------------------------------
Confidence 999999999987632 00 00 011
Q ss_pred hhhcccCCCeEec--CCcceEeCC----eEEecC-----CcEecCcEEEEccCCCCCCCCCCcccccccCCccccccccc
Q psy2343 237 ILYHIGHGDILPK--DDIKNLNGN----IVHFVD-----DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA 305 (396)
Q Consensus 237 ~~~~i~~g~i~~~--~~i~~i~~~----~v~~~d-----G~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~ 305 (396)
+.+....|++. ..+.+++++ .|.+.+ +..+++|.||+|||++++.++++...+..+++.+.+.. .+
T Consensus 197 --~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~-~~ 273 (332)
T 3lzw_A 197 --ENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKS-TM 273 (332)
T ss_dssp --HHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCT-TS
T ss_pred --HHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCC-CC
Confidence 11111234443 356666654 377776 34689999999999999999888766666666676665 45
Q ss_pred cCCCCcEEEEecccC---cCchhhHHHHHHHHHHHHHhcccc
Q psy2343 306 PRNLDNIFFFGFVNA---AAGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 306 ~~~~p~l~~iG~~~~---~~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
.++.|+||++||+.. ....+..+..||+.+|..+...+.
T Consensus 274 ~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 315 (332)
T 3lzw_A 274 ETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMD 315 (332)
T ss_dssp BCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhC
Confidence 678999999999963 344677888999999988876654
No 11
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=99.95 E-value=1.1e-27 Score=225.53 Aligned_cols=238 Identities=17% Similarity=0.201 Sum_probs=179.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC-CCCCCCCCC--Cccccee
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG--YFSGEIL 123 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~-~p~~P~~~g--~~~g~~~ 123 (396)
+..++.+|+.++++++++. ++++++|++|+.+++.|+|++.++.++.||+||+|||..+ .|..|+++| .+.+..+
T Consensus 63 ~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~ 140 (335)
T 2zbw_A 63 YAKDLVKGLVEQVAPFNPV--YSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGV 140 (335)
T ss_dssp EHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTE
T ss_pred CHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEE
Confidence 5688999999999999876 8899999999998778999998887899999999999854 578888888 4655444
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|.. +++...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+. +. + ...
T Consensus 141 ~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-~~-----~-------------------~~~ 194 (335)
T 2zbw_A 141 YYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-AH-----E-------------------ASV 194 (335)
T ss_dssp ESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-SC-----H-------------------HHH
T ss_pred EEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-cc-----H-------------------HHH
Confidence 443 445556789999999999999999999999999999999986421 00 0 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEeCC----eEEec---CC--cEecCcE
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLNGN----IVHFV---DD--THIEVDT 272 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~~~----~v~~~---dG--~~~~~D~ 272 (396)
+. +.+.+.+..|++.. .|.+++++ .|.+. +| +.+++|.
T Consensus 195 ~~-------------------------------l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~ 243 (335)
T 2zbw_A 195 KE-------------------------------LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDA 243 (335)
T ss_dssp HH-------------------------------HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSE
T ss_pred HH-------------------------------HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCE
Confidence 11 11222223445432 46666543 57776 78 4689999
Q ss_pred EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhcccc
Q psy2343 273 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 273 VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
||+|||++++.++++...+..+++.+.+.. .+.++.|+||++||+... ...+..+..||+.+|..+.+.+.
T Consensus 244 vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 317 (335)
T 2zbw_A 244 VLILAGYITKLGPLANWGLALEKNKIKVDT-TMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYAN 317 (335)
T ss_dssp EEECCCEEEECGGGGGSCCCEETTEEECCT-TCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeecCCCCchHhhhcceeccCCeeeeCC-CCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhh
Confidence 999999999988887666665556676665 456889999999998742 24667788899999998877653
No 12
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=99.95 E-value=4.4e-27 Score=217.20 Aligned_cols=233 Identities=13% Similarity=0.093 Sum_probs=184.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
..+..++.+|+.+++++++.- ..++++|+.++++++.|.|++.+++++.||+||+|||. .|+.|.+|| .+.+..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~--~~~~~~~~g~~~~~~~~ 127 (297)
T 3fbs_A 52 GKAPGEIIAEARRQIERYPTI--HWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGV--TDELPEIAGLRERWGSA 127 (297)
T ss_dssp TCCHHHHHHHHHHHHTTCTTE--EEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCC--EEECCCCBTTGGGBTTT
T ss_pred CCCHHHHHHHHHHHHHhcCCe--EEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCC--CCCCCCCCCchhhcCCe
Confidence 456789999999999987321 23367999999988899999999988999999999999 788999999 566777
Q ss_pred eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+|.+.+.+...+++|+|+|||+|.+|+|+|..|++.+ +|+++.|++..
T Consensus 128 ~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~------------------------------- 175 (297)
T 3fbs_A 128 VFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE------------------------------- 175 (297)
T ss_dssp EESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC-------------------------------
T ss_pred eEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC-------------------------------
Confidence 7777777777788999999999999999999999987 99999987520
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec-CCcceEeCC-eEEecCCcEecCcEEEEccCCC
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK-DDIKNLNGN-IVHFVDDTHIEVDTIIYATGYN 280 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~-~~i~~i~~~-~v~~~dG~~~~~D~VI~aTG~~ 280 (396)
+...+.+.+.+..|++. ..|++++++ .|.++||+.+++|.||+|||++
T Consensus 176 ------------------------------~~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~ 225 (297)
T 3fbs_A 176 ------------------------------PDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLR 225 (297)
T ss_dssp ------------------------------CCHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEE
T ss_pred ------------------------------CCHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcc
Confidence 01111122222244432 467788776 8999999999999999999999
Q ss_pred CCCCCCCcccccccC---C-ccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343 281 RHFPFIDKEKLEWKL---G-IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 281 ~~~~~l~~~~~~~~~---~-~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
++.++++...+..+. + .+.+... +.++.|+||++||+......+..|..||+.+|..+...+.
T Consensus 226 p~~~~~~~~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 226 ITVDWIEKLGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp CCCSCHHHHTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHhcCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHh
Confidence 998888765555432 3 4555544 5789999999999987667788999999999998876654
No 13
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=99.95 E-value=4.3e-27 Score=219.82 Aligned_cols=233 Identities=18% Similarity=0.201 Sum_probs=180.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
.+..++.+|+.++++++++. +++ ++|++++++++.|.|++.++.++.||+||+|||. .|+.|.++| .|.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~~~~~ 141 (323)
T 3f8d_A 67 IQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGV--KRRKLGVPGEQEFAGRGI 141 (323)
T ss_dssp EEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCC--EECCCCCTTTTTTBTTTE
T ss_pred CCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCC--CCccCCCCchhhhcCCce
Confidence 35789999999999999987 777 8999999988889999988888999999999999 689999999 6667777
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|...+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++... + .+ .+.
T Consensus 142 ~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~-~--------------------~~----~~~ 196 (323)
T 3f8d_A 142 SYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-A--------------------QP----IYV 196 (323)
T ss_dssp ESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC-S--------------------CH----HHH
T ss_pred EEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC-c--------------------CH----HHH
Confidence 7776666667789999999999999999999999999999999876321 0 00 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEEecC---Cc--EecCcE
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFVD---DT--HIEVDT 272 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~d---G~--~~~~D~ 272 (396)
+. ..+...|++. ..|.+++++ .|.+.| |+ .+++|.
T Consensus 197 ~~----------------------------------~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~ 242 (323)
T 3f8d_A 197 ET----------------------------------VKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNG 242 (323)
T ss_dssp HH----------------------------------HHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSE
T ss_pred HH----------------------------------HHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCE
Confidence 11 1122245543 346667644 477876 87 689999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhccc
Q psy2343 273 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 273 VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
||+|||++++.++++...+..+ ++.+.+.. .+.++.|+||++||+... ...+..|..||+.+|..+...+
T Consensus 243 vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp EEECCCEECCHHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChhHHhhcCeeecCCCcEecCC-CceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHH
Confidence 9999999999888876655543 35565554 557889999999999864 4567888999999998876654
No 14
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=99.95 E-value=8.7e-27 Score=217.01 Aligned_cols=233 Identities=14% Similarity=0.171 Sum_probs=178.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
..+..++.+|+.++++++++. +++ ++|++++.+++.|.|++.+++++.||+||+|||. .|+.|.++| .|.+..
T Consensus 55 ~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~~~g~~~~~~~~ 129 (311)
T 2q0l_A 55 VVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG--SPKRTGIKGESEYWGKG 129 (311)
T ss_dssp CBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE--EECCCCCBTHHHHBTTT
T ss_pred cCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC--CCCCCCCCChhhccCCc
Confidence 457889999999999999876 666 7999999888889998888888999999999998 788899998 566666
Q ss_pred eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+..
T Consensus 130 ~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------- 180 (311)
T 2q0l_A 130 VSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC----------------------------- 180 (311)
T ss_dssp EESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS-----------------------------
T ss_pred EEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC-----------------------------
Confidence 776655554456789999999999999999999999999999998763210
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeEec--CCcceEeCC-----eEEec---CCc--Eec
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILPK--DDIKNLNGN-----IVHFV---DDT--HIE 269 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~~~--~~i~~i~~~-----~v~~~---dG~--~~~ 269 (396)
...+.+.+ +...|++. ..+.+++++ .|.+. +|+ .++
T Consensus 181 -------------------------------~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~ 229 (311)
T 2q0l_A 181 -------------------------------APITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELV 229 (311)
T ss_dssp -------------------------------CHHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred -------------------------------CHHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEe
Confidence 00111111 11245543 346666532 46776 676 589
Q ss_pred CcEEEEccCCCCCCCCCCccc----cccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343 270 VDTIIYATGYNRHFPFIDKEK----LEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~~~~----~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+|.||+|||++|+.++++... +..+ .+.+.+... +.++.|+||++||+... ...+..|..||+.+|..+...+
T Consensus 230 ~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 230 VPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp CSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999998887653 5543 356666554 57889999999999764 3567889999999999887654
No 15
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=99.95 E-value=1.5e-26 Score=216.92 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=177.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCe-EEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccc
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS 119 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~ 119 (396)
.++..++.+|+.++++++++. +++ ++|++|+.. ++. |.|.+.+|+++.||+||+|||. .|+.|.++| .+.
T Consensus 61 ~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~i~g~~~~~ 135 (325)
T 2q7v_A 61 PIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA--DPRKLGIPGEDNFW 135 (325)
T ss_dssp CBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE--EECCCCCTTTTTTB
T ss_pred CCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhcc
Confidence 346789999999999999986 666 689999886 444 8898888888999999999999 788899998 566
Q ss_pred cceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 199 (396)
Q Consensus 120 g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (396)
+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.... . .
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-------------~---- 191 (325)
T 2q7v_A 136 GKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------N-------------K---- 191 (325)
T ss_dssp TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-------C-------------H----
T ss_pred CceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-------c-------------h----
Confidence 666776655555556789999999999999999999999999999999763210 0 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEEec---CCc--Ee
Q psy2343 200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFV---DDT--HI 268 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~---dG~--~~ 268 (396)
.+.+++ .+...|++. ..++++.++ +|.+. +|+ .+
T Consensus 192 -~~~~~l----------------------------------~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i 236 (325)
T 2q7v_A 192 -VAQARA----------------------------------FANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSEL 236 (325)
T ss_dssp -HHHHHH----------------------------------HTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEE
T ss_pred -HHHHHH----------------------------------HhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEE
Confidence 111111 111244443 346666543 57775 676 58
Q ss_pred cCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcccc
Q psy2343 269 EVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 269 ~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
++|.||+|||++++.++++.. +..+ ++.+.+.+. +.++.|+||++||+... ...+..|..||+.+|..+.+.+.
T Consensus 237 ~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 312 (325)
T 2q7v_A 237 ATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLA 312 (325)
T ss_dssp ECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCEEEEccCCCCChHHHhhh-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765 5543 455666555 57889999999999764 35677899999999998877654
No 16
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=99.94 E-value=8.5e-27 Score=219.32 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=180.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cCcEEEcCEEEEcccCCCCCCCCCCCC--Cc
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYPNYSG--YF 118 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~ 118 (396)
.+.+..++.+|+.++++++++. +++++ |++++.+++.|.+++. ++.++.||+||+|||. .|+.|.++| .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~--~~~~~~~~g~~~~ 153 (338)
T 3itj_A 79 DGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA--SAKRMHLPGEETY 153 (338)
T ss_dssp TCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE--EECCCCCTTHHHH
T ss_pred ccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC--CcCCCCCCCchhc
Confidence 3456899999999999999987 88888 9999988888999884 5667899999999999 889999999 56
Q ss_pred ccceeecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 119 SGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 119 ~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
.+..+|+..+.+.. .+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.... ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~---------------------~~ 212 (338)
T 3itj_A 154 WQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA---------------------ST 212 (338)
T ss_dssp BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---------------------CH
T ss_pred cCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC---------------------CH
Confidence 66667766554444 56899999999999999999999999999999999863210 00
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCe-----EEecC-----
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNI-----VHFVD----- 264 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~-----v~~~d----- 264 (396)
.+.+.+. +...|++. ..|.+++.+. |++.+
T Consensus 213 ----~~~~~l~----------------------------------~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~ 254 (338)
T 3itj_A 213 ----IMQKRAE----------------------------------KNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNE 254 (338)
T ss_dssp ----HHHHHHH----------------------------------HCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTE
T ss_pred ----HHHHHHH----------------------------------hcCCeEEeecceeEEEEcccCcEEEEEEEECCCCc
Confidence 1111111 11145543 3566665432 77776
Q ss_pred CcEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcc
Q psy2343 265 DTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 265 G~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~ 342 (396)
++.+++|.||+|||++++.++++. .+..+ ++.+.+....+.++.|+||++||+... ...+..|..||+.+|..+...
T Consensus 255 ~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (338)
T 3itj_A 255 ETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKY 333 (338)
T ss_dssp EEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHH
Confidence 456899999999999999988876 55554 455555566778899999999999853 356678899999999888765
Q ss_pred cc
Q psy2343 343 IR 344 (396)
Q Consensus 343 ~~ 344 (396)
++
T Consensus 334 l~ 335 (338)
T 3itj_A 334 LT 335 (338)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 17
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.94 E-value=2.5e-26 Score=218.52 Aligned_cols=238 Identities=15% Similarity=0.181 Sum_probs=177.7
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCC-CCCCCCCCC---Ccccc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG---YFSGE 121 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~-~p~~P~~~g---~~~g~ 121 (396)
+..++.+|+.++++++++. ++++++|+.|+..+ +.|.|++.+++++.||+||+|||..+ .|..|.++| .+.+.
T Consensus 72 ~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~ 149 (360)
T 3ab1_A 72 PAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGS 149 (360)
T ss_dssp EHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTT
T ss_pred CHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCc
Confidence 5689999999999998876 88999999999874 48999998888899999999999955 677777777 35554
Q ss_pred eeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 201 (396)
Q Consensus 122 ~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 201 (396)
.+|.+ +++...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+. + .+ .
T Consensus 150 ~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-~-----~~-------------------~ 203 (360)
T 3ab1_A 150 SVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ-G-----HG-------------------K 203 (360)
T ss_dssp TEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS-S-----CS-------------------H
T ss_pred eEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC-C-----CH-------------------H
Confidence 44443 455556789999999999999999999999999999999976321 0 00 0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEeCC-----eEEec--CC--cEecC
Q psy2343 202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLNGN-----IVHFV--DD--THIEV 270 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~~~-----~v~~~--dG--~~~~~ 270 (396)
+. ..+.+...+..|++.. .|.+++.+ +|.+. +| ..+++
T Consensus 204 ~~-------------------------------~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~ 252 (360)
T 3ab1_A 204 TA-------------------------------HEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEA 252 (360)
T ss_dssp HH-------------------------------HSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEEC
T ss_pred HH-------------------------------HHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeC
Confidence 00 0111122223455432 46666532 57775 78 46899
Q ss_pred cEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhcccc
Q psy2343 271 DTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 271 D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
|.||+|||++++.++++...+..+++.+.+.. .+.++.|+||++||+... ...+..+..||+.+|..+.+.+.
T Consensus 253 D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 328 (360)
T 3ab1_A 253 DRLLILIGFKSNLGPLARWDLELYENALVVDS-HMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIK 328 (360)
T ss_dssp SEEEECCCBCCSCGGGGGSSCCEETTEEECCT-TSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCCCCCCHHHHHhhccccccCeeeecC-CCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcC
Confidence 99999999999988887666665556676665 456789999999999742 24567788999999998876654
No 18
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1e-25 Score=212.21 Aligned_cols=232 Identities=15% Similarity=0.152 Sum_probs=175.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE-EEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V-~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
....++.+|+.++++++++. +++++ |++|+. ++.|+| .+++++++.||+||+|||. .|..|++|| .+.+..
T Consensus 68 ~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~ 141 (335)
T 2a87_A 68 ITGPELMDEMREQALRFGAD--LRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGA--AARYLQVPGEQELLGRG 141 (335)
T ss_dssp BCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCE--EECCCCCTHHHHTBTTT
T ss_pred CCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCC--CccCCCCCchHhccCCc
Confidence 35789999999999999886 78886 999988 677888 8878888999999999999 788899998 566666
Q ss_pred eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+|+..+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+... . .+
T Consensus 142 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~--------------------~-----~~ 196 (335)
T 2a87_A 142 VSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS--------------------K-----IM 196 (335)
T ss_dssp EESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC--------------------T-----TH
T ss_pred eEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc--------------------H-----HH
Confidence 7765544444467899999999999999999999999999999988632100 0 11
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCe----EEec---CC--cEecCc
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNI----VHFV---DD--THIEVD 271 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~----v~~~---dG--~~~~~D 271 (396)
.++ .+....|++. ..|++++++. |.+. +| +.+++|
T Consensus 197 ~~~----------------------------------~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D 242 (335)
T 2a87_A 197 LDR----------------------------------ARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVT 242 (335)
T ss_dssp HHH----------------------------------HHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCS
T ss_pred HHH----------------------------------HhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecC
Confidence 111 1112245543 3566666543 7776 45 458999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.||+|||++|+.++++ ..+..+ ++.+.+...++.++.|+||++||+... ......|..||+.+|..+...+
T Consensus 243 ~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 243 GVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp CEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHh
Confidence 9999999999998887 345543 466777666678899999999999764 2456678889999988876654
No 19
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=99.93 E-value=1.7e-25 Score=208.30 Aligned_cols=233 Identities=16% Similarity=0.198 Sum_probs=176.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccc
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 120 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g 120 (396)
+.+..++.+|+.++++++++. ++++ +|+++ +++ +.|.|++..+.++.||+||+|||. .|+.|.+|| .+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~g~~~~~~ 131 (315)
T 3r9u_A 58 VMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGS--APKKAGFKGEDEFFG 131 (315)
T ss_dssp CBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCBTTTTTBT
T ss_pred CCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCC--CCCCCCCCChhhcCC
Confidence 457899999999999999987 7777 99999 776 789963332227899999999999 899999999 5777
Q ss_pred ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
..+|+..+.+...+.+++|+|||+|.+|+|+|..|.+.+.+|+++.|++.+.. ..
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---------------------~~---- 186 (315)
T 3r9u_A 132 KGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---------------------AP---- 186 (315)
T ss_dssp TTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---------------------CH----
T ss_pred CeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---------------------CH----
Confidence 78888777666677899999999999999999999999999999999864210 00
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEec--CCc--Eec
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV--DDT--HIE 269 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~--dG~--~~~ 269 (396)
.+.++++ +...|++ ...+.+++.+ +|++. +|+ .++
T Consensus 187 ~~~~~~~----------------------------------~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~ 232 (315)
T 3r9u_A 187 STVEKVK----------------------------------KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLN 232 (315)
T ss_dssp HHHHHHH----------------------------------HCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEEC
T ss_pred HHHHHHH----------------------------------hcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEee
Confidence 1111111 1224444 3456666543 26666 886 689
Q ss_pred CcEEEEccCCCCCCCCCCc---cc-ccccC-CccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhccc
Q psy2343 270 VDTIIYATGYNRHFPFIDK---EK-LEWKL-GIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~l~~---~~-~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+|.||+|||++|+..+++. .. +..+. +.+.+.. .+.++.|+||++||+.. ....+..|..||+.+|..+...+
T Consensus 233 ~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 233 VPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp CSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHH
Confidence 9999999999999888775 22 55443 5566555 56789999999999964 24567788999999998886554
No 20
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=99.93 E-value=1.2e-25 Score=209.11 Aligned_cols=233 Identities=17% Similarity=0.150 Sum_probs=174.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccc
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS 119 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~ 119 (396)
+++..++.+|++++++++++. ++++++|+.++++ ++.|.|++++|+++.||+||+|||. .|..|.+|| .+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~--~~~~~~~~g~~~~~ 127 (310)
T 1fl2_A 52 KTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA--KWRNMNVPGEDQYR 127 (310)
T ss_dssp SEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTB
T ss_pred CCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhcc
Confidence 446789999999999999886 8899999999875 3479999988888999999999999 688888888 566
Q ss_pred cceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 199 (396)
Q Consensus 120 g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (396)
+..+|+........+.+|+|+|||+|.+|+|+|..|++.+.+|+++.|++.+.. + .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------~-----------~---- 183 (310)
T 1fl2_A 128 TKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------D-----------Q---- 183 (310)
T ss_dssp TTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---------C-----------H----
T ss_pred cceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc---------c-----------H----
Confidence 666666554434456789999999999999999999999999999999864200 0 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeEec--CCcceEeCC-----eEEecC---Cc--
Q psy2343 200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILPK--DDIKNLNGN-----IVHFVD---DT-- 266 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~~--~~i~~i~~~-----~v~~~d---G~-- 266 (396)
.+. +.+.. ..|++. ..++++.++ +|.+.+ |+
T Consensus 184 -~~~-----------------------------------~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~ 227 (310)
T 1fl2_A 184 -VLQ-----------------------------------DKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIH 227 (310)
T ss_dssp -HHH-----------------------------------HHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEE
T ss_pred -HHH-----------------------------------HHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEE
Confidence 111 11111 234443 346666533 467764 54
Q ss_pred EecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343 267 HIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 267 ~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.+++|.||+|||++|+.+++... +..+ .+.+.+...+ .++.|+||++||+.... .....|..||+.+|..+...+
T Consensus 228 ~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 228 NIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp EEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHH
Confidence 58999999999999998888753 5543 3566666554 68999999999997643 356788899999998887654
No 21
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=99.93 E-value=1.2e-25 Score=209.97 Aligned_cols=236 Identities=19% Similarity=0.284 Sum_probs=175.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
....++.+|+.++++++++. +++++ |+.++.+++.|.| +.++.++.||+||+|||. .|..|.++| .+.+..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~--~~~~~~~~g~~~~~~~~~ 132 (320)
T 1trb_A 59 LTGPLLMERMHEHATKFETE--IIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGA--SARYLGLPSEEAFKGRGV 132 (320)
T ss_dssp CBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCE--EECCCCCHHHHHTBTTTE
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCC--CcCCCCCCChHHhCCcee
Confidence 45789999999999999986 77775 9999887788988 667778999999999999 788888988 4555566
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|+..+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+.. .+ .+.
T Consensus 133 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~----~~~ 187 (320)
T 1trb_A 133 SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---------------------EK----ILI 187 (320)
T ss_dssp ESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---------------------CH----HHH
T ss_pred EecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---------------------CH----HHH
Confidence 66554444446789999999999999999999999999999999863210 00 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe-----EEecC----C--cEecC
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI-----VHFVD----D--THIEV 270 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~-----v~~~d----G--~~~~~ 270 (396)
+. +.+.+.+..|++ ...|.+++.+. |.+.+ | +.+++
T Consensus 188 ~~-------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~ 236 (320)
T 1trb_A 188 KR-------------------------------LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV 236 (320)
T ss_dssp HH-------------------------------HHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEEC
T ss_pred HH-------------------------------HHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEc
Confidence 11 111222234554 34566665432 77765 5 45899
Q ss_pred cEEEEccCCCCCCCCCCcccccccCCcccccccc----ccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhcccc
Q psy2343 271 DTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHI----APRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 271 D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~----~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
|.||+|||++++.++++. .+..+++.+.+...+ ..++.|+||++||+.... .....|..||+.+|..+...+.
T Consensus 237 D~vv~a~G~~p~~~~~~~-~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 314 (320)
T 1trb_A 237 AGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 314 (320)
T ss_dssp SEEEECSCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCChHHhcc-cccccCceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHH
Confidence 999999999999888873 344455556665553 478899999999997642 4567788999999988876654
No 22
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=99.93 E-value=6e-25 Score=205.39 Aligned_cols=231 Identities=15% Similarity=0.148 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
....++.+++.++++++++. +++ ++|+.++.+++.|.|.+ ++.++.||+||+|||. .|+.|.++| .+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~--~~~~~~i~g~~~~~~~~~ 142 (319)
T 3cty_A 69 IVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGT--THKHLGVKGESEYFGKGT 142 (319)
T ss_dssp BCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCE--EECCCCCBTTTTTBTTTE
T ss_pred cCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCC--CcccCCCCChHHhCCceE
Confidence 45789999999999998876 666 78999998888898887 5567899999999998 788888888 4544555
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
|.....+...+.+++|+|||+|.+|+|+|..|++.+++|+++.|++.... . . .+.
T Consensus 143 ~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~-------~-~-----------------~l~ 197 (319)
T 3cty_A 143 SYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC-------E-N-----------------AYV 197 (319)
T ss_dssp ESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS-------C-H-----------------HHH
T ss_pred EEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC-------C-H-----------------HHH
Confidence 55444333456789999999999999999999999999999998763210 0 0 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEec---CCc--EecCc
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV---DDT--HIEVD 271 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~---dG~--~~~~D 271 (396)
+.+. ...|++ ...++++.++ +|.+. +|+ .+++|
T Consensus 198 ~~l~-----------------------------------~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D 242 (319)
T 3cty_A 198 QEIK-----------------------------------KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETD 242 (319)
T ss_dssp HHHH-----------------------------------HTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCS
T ss_pred HHHh-----------------------------------cCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecC
Confidence 1111 112222 2345555432 46665 676 58999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.||+|||++++.+++....+..+ ++.+.+.+. +.++.|+||++||+... ...+..|..||+.+|..+...+
T Consensus 243 ~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 315 (319)
T 3cty_A 243 GVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDS 315 (319)
T ss_dssp EEEECCCEEECCGGGTTSCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCccChHHHhhccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988886656554 356666655 57899999999999764 2567789999999999887654
No 23
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=99.92 E-value=1.5e-24 Score=203.74 Aligned_cols=231 Identities=17% Similarity=0.177 Sum_probs=171.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--C----ccc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--Y----FSG 120 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~----~~g 120 (396)
...++.+++.++++++++. +++++ |+.++..++.|+|++ ++.++.||+||+|||. .|..|++|| . |.+
T Consensus 68 ~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~--~~~~~~~~g~~~~~~~~~~ 141 (333)
T 1vdc_A 68 LGVELTDKFRKQSERFGTT--IFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGA--VAKRLSFVGSGEVLGGFWN 141 (333)
T ss_dssp EHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCE--EECCCCCBTCSSSSSCCBT
T ss_pred CHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCC--CcCCCCCCCcccccccccc
Confidence 5689999999999999986 77886 999988777899988 7777999999999999 688888888 3 555
Q ss_pred ceeecccCCCCCC--CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHH
Q psy2343 121 EILHSMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198 (396)
Q Consensus 121 ~~~hs~~~~~~~~--~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 198 (396)
..+|+..+.+... ..+++|+|||+|.+|+|+|..|++.+.+|+++.|++.... ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--------------------~~--- 198 (333)
T 1vdc_A 142 RGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--------------------SK--- 198 (333)
T ss_dssp TTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--------------------CH---
T ss_pred CcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--------------------cH---
Confidence 6667655444333 6789999999999999999999999999999999863210 00
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC-------eEEec---CC-
Q psy2343 199 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN-------IVHFV---DD- 265 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~-------~v~~~---dG- 265 (396)
.+.++ .+....|++. ..|.+++++ .|.+. +|
T Consensus 199 --~~~~~----------------------------------~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~ 242 (333)
T 1vdc_A 199 --IMQQR----------------------------------ALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGD 242 (333)
T ss_dssp --HHHHH----------------------------------HHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCC
T ss_pred --HHHHH----------------------------------HHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCc
Confidence 11111 1122245543 356666532 27776 46
Q ss_pred -cEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcc
Q psy2343 266 -THIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 266 -~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+++++|.||+|||++++.++++. .+..+ ++.+.+...++.++.|+||++||+... ......|..||+.+|..+...
T Consensus 243 ~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 321 (333)
T 1vdc_A 243 VSDLKVSGLFFAIGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHY 321 (333)
T ss_dssp EEEEECSEEEECSCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCEEEEEeCCccchHHhhc-cccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHH
Confidence 45899999999999999988873 44443 466777766678899999999999764 245667888888888777654
Q ss_pred c
Q psy2343 343 I 343 (396)
Q Consensus 343 ~ 343 (396)
+
T Consensus 322 l 322 (333)
T 1vdc_A 322 L 322 (333)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=99.92 E-value=4.1e-24 Score=212.74 Aligned_cols=232 Identities=16% Similarity=0.152 Sum_probs=176.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccc
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 120 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g 120 (396)
....++.+|++++++++++. ++++++|+.|+++ ++.|.|++++|.++.||+||+|||+ .|+.|.+|| .|.+
T Consensus 264 ~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~--~~~~~~ipG~~~~~~ 339 (521)
T 1hyu_A 264 TEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA--KWRNMNVPGEDQYRT 339 (521)
T ss_dssp BCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC--CcCCCCCCChhhhcC
Confidence 46789999999999999987 8899999999864 3479999988888999999999999 788888998 5666
Q ss_pred ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
..+|.+...+...+.+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+.. .
T Consensus 340 ~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---------------------~----- 393 (521)
T 1hyu_A 340 KGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------------------D----- 393 (521)
T ss_dssp TTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---------------------C-----
T ss_pred ceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---------------------C-----
Confidence 66777666555567899999999999999999999999999999998764210 0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeEec--CCcceEeCC-----eEEecC---Cc--E
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILPK--DDIKNLNGN-----IVHFVD---DT--H 267 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~~--~~i~~i~~~-----~v~~~d---G~--~ 267 (396)
. .+.+.+.. .+|++. ..+++++++ +|.+.| |+ .
T Consensus 394 ~----------------------------------~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~ 439 (521)
T 1hyu_A 394 Q----------------------------------VLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS 439 (521)
T ss_dssp H----------------------------------HHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE
T ss_pred H----------------------------------HHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE
Confidence 0 11111222 245543 346666542 466754 54 4
Q ss_pred ecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343 268 IEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 268 ~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+++|.||+|+|++|+.+++... +..+ .+.+.+... +.++.|+||++||+.... ..+..|..||+.+|..+...+
T Consensus 440 i~~D~vi~a~G~~pn~~~l~~~-l~~~~~G~I~Vd~~-~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 440 VALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAK-CETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp EECSEEEECCCEEESCGGGTTT-SCBCTTSCBCCCTT-CBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCEEEECcCCCCCchHHhhh-hccCCCCcEEeCCC-CCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHH
Confidence 8999999999999998888753 4443 355655544 468899999999997643 456788899999988776543
No 25
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=99.92 E-value=1.6e-26 Score=221.48 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=165.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeec
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS 125 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs 125 (396)
.+.+++..+..++++++++. ++++++|++|+++++ +|++++|+++.||+||||||+ .|+.|++||.. .+++.
T Consensus 59 ~~~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~--~p~~p~i~G~~--~v~~~ 130 (385)
T 3klj_A 59 KSIDDILIKKNDWYEKNNIK--VITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS--IANKIKVPHAD--EIFSL 130 (385)
T ss_dssp CCGGGTBSSCHHHHHHTTCE--EECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECCCCCTTCS--CEECC
T ss_pred CCHHHccCCCHHHHHHCCCE--EEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC--CcCCCCCCCCC--CeEEe
Confidence 34556666677777788887 889999999997654 688888988999999999998 89999999832 34554
Q ss_pred ccCCCCCCCC-----CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 126 MDYKSPDQIR-----NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 126 ~~~~~~~~~~-----~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
..+.+...++ +|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+ +|+. +..
T Consensus 131 ~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~-l~~~----------------~~~----- 188 (385)
T 3klj_A 131 YSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP-LERQ----------------LDR----- 188 (385)
T ss_dssp SSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS-CTTT----------------SCH-----
T ss_pred CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc-chhh----------------cCH-----
Confidence 4333332222 789999999999999999999999999999998642 1111 000
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCeEEecCCcEecCcEEEEccC
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNIVHFVDDTHIEVDTIIYATG 278 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~v~~~dG~~~~~D~VI~aTG 278 (396)
.+.+. +.+.+....|++. ..++++ |+++++|.||+|||
T Consensus 189 ~~~~~-------------------------------~~~~l~~~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G 228 (385)
T 3klj_A 189 DGGLF-------------------------------LKDKLDRLGIKIYTNSNFEEM---------GDLIRSSCVITAVG 228 (385)
T ss_dssp HHHHH-------------------------------HHHHHHTTTCEEECSCCGGGC---------HHHHHHSEEEECCC
T ss_pred HHHHH-------------------------------HHHHHHhCCCEEEeCCEEEEc---------CeEEecCeEEECcC
Confidence 11111 1122222234432 344444 66789999999999
Q ss_pred CCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccC----cCchhhHHHHHHHHHHHHHhccc
Q psy2343 279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA----AAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~----~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
++|+.++++...+..+++ +.+.. .+.++.|+||++||+.. ....+..|..||+.+|..+.|..
T Consensus 229 ~~p~~~~~~~~gl~~~~g-i~vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 229 VKPNLDFIKDTEIASKRG-ILVND-HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295 (385)
T ss_dssp EEECCGGGTTSCCCBSSS-EEECT-TCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred cccChhhhhhcCCCcCCC-EEECC-CcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 999999988777776544 65554 45789999999999975 24567899999999999999864
No 26
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=99.90 E-value=2.3e-24 Score=208.55 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=163.3
Q ss_pred HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC----
Q psy2343 57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD---- 132 (396)
Q Consensus 57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~---- 132 (396)
.+.+++++. ++++++|+.|++.. ++|++.+|+++.||+||+|||. .|+.|++||.-...+++.....+..
T Consensus 65 ~~~~~~~i~--~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~--~p~~~~ipG~~~~~v~~~~~~~d~~~l~~ 138 (410)
T 3ef6_A 65 DWYGEARID--MLTGPEVTALDVQT--RTISLDDGTTLSADAIVIATGS--RARTMALPGSQLPGVVTLRTYGDVQVLRD 138 (410)
T ss_dssp THHHHTTCE--EEESCCEEEEETTT--TEEEETTSCEEECSEEEECCCE--EECCCCCTTTTSTTEECCCSHHHHHHHHH
T ss_pred HHHHHCCCE--EEeCCEEEEEECCC--CEEEECCCCEEECCEEEEccCC--cccCCCCCCccccceEEeccHHHHHHHHH
Confidence 444567776 88999999998643 4788888888999999999999 7999999982222344432222211
Q ss_pred -CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhc
Q psy2343 133 -QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG 211 (396)
Q Consensus 133 -~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 211 (396)
...+|+|+|||+|.+|+|+|..+.+.+.+|+++.|.+.+. |+. ++. .+.+.
T Consensus 139 ~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l-~~~------------~~~---------~~~~~------ 190 (410)
T 3ef6_A 139 SWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL-VRV------------LGR---------RIGAW------ 190 (410)
T ss_dssp HCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-HHH------------HCH---------HHHHH------
T ss_pred HhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc-hhh------------cCH---------HHHHH------
Confidence 2358999999999999999999999999999999986421 000 000 11111
Q ss_pred CCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEccCCCCCCCC
Q psy2343 212 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNRHFPF 285 (396)
Q Consensus 212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~ 285 (396)
+.+.+.+..|++ ...|++++++ .|.++||+++++|.||+|||++++.++
T Consensus 191 -------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l 245 (410)
T 3ef6_A 191 -------------------------LRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQL 245 (410)
T ss_dssp -------------------------HHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHH
T ss_pred -------------------------HHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHH
Confidence 111122223443 4567777654 689999999999999999999999888
Q ss_pred CCcccccccCCccccccccccCCCCcEEEEecccCcCc---------hhhHHHHHHHHHHHHHhccc
Q psy2343 286 IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 286 l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~---------~~~~ae~qa~~~a~~l~~~~ 343 (396)
++...+..+ +++.+...+ .++.|+||++||+..... .++.|..||+.+|+.|.|..
T Consensus 246 ~~~~gl~~~-~gi~vd~~~-~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 310 (410)
T 3ef6_A 246 ARQAGLACD-RGVIVDHCG-ATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN 310 (410)
T ss_dssp HHHTTCCBS-SSEECCTTS-BCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCccC-CeEEEccCe-eECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence 877666666 446555544 789999999999975322 36899999999999999864
No 27
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.90 E-value=1.6e-24 Score=206.41 Aligned_cols=228 Identities=14% Similarity=0.118 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeeccc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 127 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~ 127 (396)
.+++..+...+++++++. ++++++|+.|++. .++|+ .+++++.||+||||||+ .|+.|++|| . ..+++..+
T Consensus 59 ~~~~~~~~~~~~~~~~v~--~~~g~~v~~id~~--~~~V~-~~g~~~~~d~lViATGs--~p~~p~i~G-~-~~v~~~~~ 129 (367)
T 1xhc_A 59 RNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG--RKVVI-TEKGEVPYDTLVLATGA--RAREPQIKG-K-EYLLTLRT 129 (367)
T ss_dssp GGGGCSSCHHHHHHHTEE--EECSCCEEEEETT--TTEEE-ESSCEEECSEEEECCCE--EECCCCSBT-G-GGEECCCS
T ss_pred HHHhccCCHHHHHhCCcE--EEECCEEEEEECC--CCEEE-ECCcEEECCEEEECCCC--CCCCCCCCC-c-CCEEEEcC
Confidence 344444555666777876 7889899999864 35677 67778999999999998 899999988 2 23555444
Q ss_pred CCCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 128 YKSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 128 ~~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+.+...+ .+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +| .+. .+
T Consensus 130 ~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~-----~~~------------------~~ 185 (367)
T 1xhc_A 130 IFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-LG-----LDE------------------EL 185 (367)
T ss_dssp HHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-TT-----CCH------------------HH
T ss_pred HHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee-cc-----CCH------------------HH
Confidence 3332222 4689999999999999999999999999999987631 11 010 11
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCCcEecCcEEEEccCCC
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYN 280 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~ 280 (396)
.+. +.+.+.+..|++ ...|++++.+.|+++||+ +++|.||+|||++
T Consensus 186 ~~~-------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~ 233 (367)
T 1xhc_A 186 SNM-------------------------------IKDMLEETGVKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIV 233 (367)
T ss_dssp HHH-------------------------------HHHHHHHTTEEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEE
T ss_pred HHH-------------------------------HHHHHHHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCC
Confidence 111 111222224554 346788887789999998 9999999999999
Q ss_pred CCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcc
Q psy2343 281 RHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 281 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|+.++++...++.++ ++.+.+. +.++.|+||++||+... ...++.|..||+.+|.++.|.
T Consensus 234 p~~~ll~~~gl~~~~-gi~Vd~~-~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 234 PNVDLARRSGIHTGR-GILIDDN-FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp ECCHHHHHTTCCBSS-SEECCTT-SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHhCCCCCCC-CEEECCC-cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 998877766666553 4666544 57889999999999642 246789999999999999875
No 28
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=99.90 E-value=2.4e-23 Score=193.94 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=160.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
..+..++.+++.+++++++.. +. ..+|..+....+.+.+.+.++.++.||+||||||+ .|+.|++|| .+.+..
T Consensus 62 ~i~~~~l~~~~~~~~~~~~~~--~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~--~~~~~~ipG~~~~~~~~ 136 (314)
T 4a5l_A 62 GIDGNELMMNMRTQSEKYGTT--II-TETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA--TAKRMHVPGEDKYWQNG 136 (314)
T ss_dssp CEEHHHHHHHHHHHHHHTTCE--EE-CCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE--EECCCCCTTHHHHBTTT
T ss_pred cCCHHHHHHHHHHHHhhcCcE--EE-EeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc--cccccCCCccccccccc
Confidence 346789999999999999875 43 44677777666777788888888999999999999 899999999 445555
Q ss_pred eecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 123 LHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 123 ~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
++...+.... .+++|+|+|||+|.+|+|+|..+++.+.+|+++.|.+....+ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~-------~------------------ 191 (314)
T 4a5l_A 137 VSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRAS-------K------------------ 191 (314)
T ss_dssp EESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-------H------------------
T ss_pred eeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccccccc-------c------------------
Confidence 6665554443 357899999999999999999999999999999987532110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC-----CeEEe-----cCCcEe
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG-----NIVHF-----VDDTHI 268 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~-----~~v~~-----~dG~~~ 268 (396)
....... ....+... ..+.++.+ .++.+ .+++.+
T Consensus 192 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i 237 (314)
T 4a5l_A 192 TMQERVL----------------------------------NHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVV 237 (314)
T ss_dssp HHHHHHH----------------------------------TCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEE
T ss_pred hhhhhhh----------------------------------cccceeeEeeeeeEEEEeeeeccceeEEeecccccceee
Confidence 0111100 00011100 01111111 12222 345679
Q ss_pred cCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhcc
Q psy2343 269 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 269 ~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~ 342 (396)
++|.|++|+|.+|+..++...+ ..++++..+.+. +.|+.|+||++||+.... .+...|..|++.+|..+...
T Consensus 238 ~~d~vi~a~G~~pn~~~l~~~~-~~~~~G~iv~~~-~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~y 310 (314)
T 4a5l_A 238 PVAGLFYAIGHSPNSKFLGGQV-KTADDGYILTEG-PKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKW 310 (314)
T ss_dssp ECSEEEECSCEEESCGGGTTSS-CBCTTSCBCCBT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEecccccChhHhcccc-eEcCCeeEeCCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887543 344444445544 589999999999997543 35667788888888766543
No 29
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=99.89 E-value=2.4e-23 Score=202.83 Aligned_cols=229 Identities=18% Similarity=0.200 Sum_probs=163.4
Q ss_pred HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---CcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCC
Q psy2343 57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSP 131 (396)
Q Consensus 57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~ 131 (396)
.+.+++++. ++.+++|+.|+...+...+.... +.++.||+||||||+ .|+.|+++| .+..+.+......+.
T Consensus 65 ~~~~~~~i~--~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs--~p~~p~i~g~~~~~~~~~~~~~~l~~ 140 (437)
T 4eqs_A 65 KFYDRKQIT--VKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA--SANSLGFESDITFTLRNLEDTDAIDQ 140 (437)
T ss_dssp HHHHHHCCE--EEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE--EECCCCCCCTTEECCSSHHHHHHHHH
T ss_pred HHHHhcCCE--EEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC--ccccccccCceEEeeccHHHHHHHHH
Confidence 445667876 88899999999876655555432 335789999999999 899999888 222211111100000
Q ss_pred --CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343 132 --DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 209 (396)
Q Consensus 132 --~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (396)
...+.++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.. +..+
T Consensus 141 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l-l~~~-------------d~~~---------------- 190 (437)
T 4eqs_A 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLM-------------DADM---------------- 190 (437)
T ss_dssp HHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC-STTS-------------CGGG----------------
T ss_pred hhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccc-cccc-------------cchh----------------
Confidence 0124689999999999999999999999999999998642 1111 0111
Q ss_pred hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC--CeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG--DILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFID 287 (396)
Q Consensus 210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g--~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~ 287 (396)
...+.+.+... ++.....|++++++.|.+++|+++++|.||+|+|.+|+..+++
T Consensus 191 ------------------------~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~ 246 (437)
T 4eqs_A 191 ------------------------NQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246 (437)
T ss_dssp ------------------------GHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCGGGT
T ss_pred ------------------------HHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHH
Confidence 11111222222 3445567889999999999999999999999999999998888
Q ss_pred cccccccC-CccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcccc
Q psy2343 288 KEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 288 ~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
..++..+. +.+.+.+ .+.|++|+||++||+... ...++.|..||+.+|.+|.|.-.
T Consensus 247 ~~gl~~~~~G~I~vd~-~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~ 313 (437)
T 4eqs_A 247 SSNIKLDRKGFIPVND-KFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT 313 (437)
T ss_dssp TSSCCCCTTSCEECCT-TCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhccCCcEecCC-CccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 77776654 4455554 457899999999999642 23577899999999999998643
No 30
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=99.89 E-value=6.9e-24 Score=205.55 Aligned_cols=234 Identities=15% Similarity=0.087 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++..+...+.++.++. ++++++|+.|++.. +.|++.+++++.||+||+|||. .|+.|+++| ...+ +++..
T Consensus 64 ~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~-v~~~~ 136 (415)
T 3lxd_A 64 FERICIRPAQFWEDKAVE--MKLGAEVVSLDPAA--HTVKLGDGSAIEYGKLIWATGG--DPRRLSCVGADLAG-VHAVR 136 (415)
T ss_dssp SGGGBSSCHHHHHHTTEE--EEETCCEEEEETTT--TEEEETTSCEEEEEEEEECCCE--ECCCCBTTSSCCBT-EECCC
T ss_pred HHHhccCCHHHHHHCCcE--EEeCCEEEEEECCC--CEEEECCCCEEEeeEEEEccCC--ccCCCCCCCccccC-EEEEc
Confidence 344555556666777876 88899999998643 4788888888999999999998 899999998 4332 32221
Q ss_pred cCCCCC-----CCC-CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 127 DYKSPD-----QIR-NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 127 ~~~~~~-----~~~-~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
...+.. ... +++|+|||+|.+|+|+|..+.+.+.+|+++.+.+.+. ++. +..
T Consensus 137 ~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l-~~~----------------~~~----- 194 (415)
T 3lxd_A 137 TKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL-ARV----------------AGE----- 194 (415)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TTT----------------SCH-----
T ss_pred CHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh-hhh----------------cCH-----
Confidence 111111 113 8999999999999999999999999999999986321 110 000
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCC-----eEEecCCcEecCcEE
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDDTHIEVDTI 273 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~-----~v~~~dG~~~~~D~V 273 (396)
.+.+. +.+.+++..|+ ....|++++++ +|.+.||+++++|.|
T Consensus 195 ~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~V 243 (415)
T 3lxd_A 195 ALSEF-------------------------------YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIV 243 (415)
T ss_dssp HHHHH-------------------------------HHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEE
T ss_pred HHHHH-------------------------------HHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEE
Confidence 11111 11122222344 34567777643 588999999999999
Q ss_pred EEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc-----------hhhHHHHHHHHHHHHHhcc
Q psy2343 274 IYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-----------LGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 274 I~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-----------~~~~ae~qa~~~a~~l~~~ 342 (396)
|+|||++|+.++++...+..++ ++.+..+ +.++.|+||++||+..... .++.|..||+.+|++|.|.
T Consensus 244 v~a~G~~p~~~l~~~~gl~~~~-gi~vd~~-~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 321 (415)
T 3lxd_A 244 IVGIGIVPCVGALISAGASGGN-GVDVDEF-CRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGA 321 (415)
T ss_dssp EECSCCEESCHHHHHTTCCCSS-SEECCTT-CBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCccChHHHHhCCCCcCC-CEEECCC-CCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCC
Confidence 9999999998888766666654 4655544 4778999999999975432 3688999999999999986
Q ss_pred c
Q psy2343 343 I 343 (396)
Q Consensus 343 ~ 343 (396)
.
T Consensus 322 ~ 322 (415)
T 3lxd_A 322 P 322 (415)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=99.89 E-value=6.6e-24 Score=205.11 Aligned_cols=223 Identities=14% Similarity=0.119 Sum_probs=160.3
Q ss_pred HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCC-CCCcccceeecccCCCC-----CC
Q psy2343 60 KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY-SGYFSGEILHSMDYKSP-----DQ 133 (396)
Q Consensus 60 ~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~-~g~~~g~~~hs~~~~~~-----~~ 133 (396)
+++++. ++++++|+.|+++ .++|++++++++.||+||+|||+ .|+.|++ +|.-. .+++.....+. ..
T Consensus 70 ~~~~v~--~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~--~~~~~~i~~G~~~-~v~~~~~~~~~~~l~~~~ 142 (408)
T 2gqw_A 70 RAPEVE--WLLGVTAQSFDPQ--AHTVALSDGRTLPYGTLVLATGA--APRALPTLQGATM-PVHTLRTLEDARRIQAGL 142 (408)
T ss_dssp TSCSCE--EEETCCEEEEETT--TTEEEETTSCEEECSEEEECCCE--EECCCGGGTTCSS-CEEECCSHHHHHHHHTTC
T ss_pred HHCCCE--EEcCCEEEEEECC--CCEEEECCCCEEECCEEEECCCC--CCCCCCccCCCCC-cEEEECCHHHHHHHHHHh
Confidence 455665 7889899999864 46788888888999999999999 8999988 88223 34443322211 11
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
..+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|+. .+ . .+...
T Consensus 143 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~---~~---------~---------~~~~~-------- 192 (408)
T 2gqw_A 143 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL-MSRA---AP---------A---------TLADF-------- 192 (408)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STTT---SC---------H---------HHHHH--------
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc-cccc---cC---------H---------HHHHH--------
Confidence 24899999999999999999999999999999997632 1110 00 0 11111
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcccc
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL 291 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~ 291 (396)
+.+.+.+..|+ ....|++++++.|++.||+++++|.||+|||++|+.++++...+
T Consensus 193 -----------------------l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl 249 (408)
T 2gqw_A 193 -----------------------VARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGL 249 (408)
T ss_dssp -----------------------HHHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTC
T ss_pred -----------------------HHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCC
Confidence 11111112333 34567777755899999999999999999999999888876666
Q ss_pred cccCCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhcccc
Q psy2343 292 EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
..++ ++.+.++ +.++.|+||++||+.... ..+..|..||+.+|.++.|...
T Consensus 250 ~~~~-gi~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~ 310 (408)
T 2gqw_A 250 ACDD-GIFVDAY-GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA 310 (408)
T ss_dssp CBSS-SEECCTT-CBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCC-CEEECCC-CccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC
Confidence 6654 4666654 578899999999997532 1567899999999999988643
No 32
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.89 E-value=4.2e-24 Score=215.21 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=167.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCc--EEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 123 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~ 123 (396)
..+.+.+|++++++++++. ++++++|++|+++.+.+.+... ++. ++.||+||||||+ .|+.|++||.....++
T Consensus 56 ~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~ipG~~~~~v~ 131 (565)
T 3ntd_A 56 RSALVLQTPESFKARFNVE--VRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA--APIVPPIPGVDNPLTH 131 (565)
T ss_dssp GGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTCCSTTEE
T ss_pred hHHhhccCHHHHHHhcCcE--EEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC--CCCCCCCCCCCCCCEE
Confidence 4556788999999999987 8899999999988777777652 243 6899999999999 8999999993222234
Q ss_pred ecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 124 HSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 124 hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
+...+.+.. ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|++.. +|.. + .
T Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~---------~----- 192 (565)
T 3ntd_A 132 SLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV-MTPV----D---------R----- 192 (565)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-CTTS----C---------H-----
T ss_pred EeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc-chhc----C---------H-----
Confidence 433322211 235789999999999999999999999999999998632 1210 0 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC-----------------
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----------------- 257 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~----------------- 257 (396)
.+...+. +.+....|+ ....|++++.
T Consensus 193 ----~~~~~l~-------------------------------~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 237 (565)
T 3ntd_A 193 ----EMAGFAH-------------------------------QAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237 (565)
T ss_dssp ----HHHHHHH-------------------------------HHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTT
T ss_pred ----HHHHHHH-------------------------------HHHHHCCCEEEeCCeEEEEecccccccccccccccccc
Confidence 1111111 111111222 2234444432
Q ss_pred ----C--eEEecCCcEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccC------c---
Q psy2343 258 ----N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA------A--- 321 (396)
Q Consensus 258 ----~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~------~--- 321 (396)
+ .++++||+++++|.||+|||++++.++++..++..+ ++.+.+.. .+.++.|+||++||+.. +
T Consensus 238 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~ 316 (565)
T 3ntd_A 238 QHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNA-MMQTSDPAIYAVGDAVEEQDFVTGQAC 316 (565)
T ss_dssp CCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCT-TCBCSSTTEEECGGGBCEEBTTTCCEE
T ss_pred ccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECC-CcccCCCCEEEeeeeEeeccccCCcee
Confidence 1 367789999999999999999999887765556554 35566654 45789999999999963 1
Q ss_pred -CchhhHHHHHHHHHHHHHhccc
Q psy2343 322 -AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 322 -~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
...++.|..||+.+|.+|.|..
T Consensus 317 ~~~~~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 317 LVPLAGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCC
T ss_pred ecccHHHHHHHHHHHHHHhcCCC
Confidence 1357789999999999998863
No 33
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.89 E-value=1.1e-23 Score=213.11 Aligned_cols=236 Identities=15% Similarity=0.233 Sum_probs=174.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCCC-cccce
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSGY-FSGEI 122 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~-~~g~~ 122 (396)
..+.+..|++++++++++. ++++++|++|+.+.+.+.+.. .++. ++.||+||+|||+ .|..|+++|. -...+
T Consensus 91 ~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~v 166 (588)
T 3ics_A 91 RQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA--KPIVPSIPGIEEAKAL 166 (588)
T ss_dssp GGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTTCTTE
T ss_pred hHHhhccCHHHHHHhcCcE--EEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC--CCCCCCCCCcccCCCe
Confidence 3456788999999999987 889999999998888777765 3454 5789999999998 8999999983 22335
Q ss_pred eecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343 123 LHSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 195 (396)
Q Consensus 123 ~hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 195 (396)
+++..+.+.. ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.. +.
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~~------------- 228 (588)
T 3ics_A 167 FTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV-MPPI----DY------------- 228 (588)
T ss_dssp EECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS----CH-------------
T ss_pred EEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc-cccC----CH-------------
Confidence 5544333221 245899999999999999999999999999999987632 1210 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCc
Q psy2343 196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVD 271 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D 271 (396)
.+.+. +.+.+....|++ ...|++++. +.|.++||+++++|
T Consensus 229 -----~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D 272 (588)
T 3ics_A 229 -----EMAAY-------------------------------VHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTD 272 (588)
T ss_dssp -----HHHHH-------------------------------HHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECS
T ss_pred -----HHHHH-------------------------------HHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcC
Confidence 11111 111122223443 456777765 67999999999999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccC------c----CchhhHHHHHHHHHHHHHh
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA------A----AGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~------~----~~~~~~ae~qa~~~a~~l~ 340 (396)
.||+|||++++.++++..++..+ ++.+.+.+ .+.++.|+||++||+.. + ...++.|..||+.+|.++.
T Consensus 273 ~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 351 (588)
T 3ics_A 273 MLILAIGVQPESSLAKGAGLALGVRGTIKVNE-KFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIH 351 (588)
T ss_dssp EEEECSCEEECCHHHHHTTCCBCGGGCBCCCT-TSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred EEEEccCCCCChHHHHhcCceEcCCCCEEECC-ccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhc
Confidence 99999999999888776666653 35555554 45789999999999973 1 2366789999999999999
Q ss_pred c
Q psy2343 341 A 341 (396)
Q Consensus 341 ~ 341 (396)
|
T Consensus 352 g 352 (588)
T 3ics_A 352 G 352 (588)
T ss_dssp T
T ss_pred C
Confidence 8
No 34
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=99.89 E-value=3.8e-23 Score=204.47 Aligned_cols=228 Identities=14% Similarity=0.177 Sum_probs=160.5
Q ss_pred HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCCCCCCCCCCC-C-------c---cccee
Q psy2343 56 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVARYPNYSG-Y-------F---SGEIL 123 (396)
Q Consensus 56 ~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~~p~~P~~~g-~-------~---~g~~~ 123 (396)
...++++++. ++++++|+.|+.+++.+.+... ++.++.||+||+|||. .|..|++|| . | ...++
T Consensus 99 ~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~~~~f~~~~~~v~ 174 (490)
T 2bc0_A 99 KEELESLGAK--VYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGS--QPILPPIKGAEIKEGSLEFEATLENLQ 174 (490)
T ss_dssp HHHHHHTTCE--EETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCE--EECCCSCBTCCBCTTCTTCCBSSTTEE
T ss_pred HHHHHhCCCE--EEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCC--CcCCCCCCCccccccccccccccCCEE
Confidence 4445567776 7889999999887776666521 2346899999999998 899998888 4 1 22356
Q ss_pred ecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 124 HSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 124 hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
+...+.+.. ...+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|+ .+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~----------------~~~~- 236 (490)
T 2bc0_A 175 FVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC-LAG----------------YYDR- 236 (490)
T ss_dssp ECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTT----------------TSCH-
T ss_pred EeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch-hhh----------------HHHH-
Confidence 544433221 146899999999999999999999999999999998632 111 0000
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe----EEecCCcEecC
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI----VHFVDDTHIEV 270 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~----v~~~dG~~~~~ 270 (396)
.+.+ .+.+.+.+..|++ ...|+++++++ |.+ ||+++++
T Consensus 237 ----~~~~-------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~ 280 (490)
T 2bc0_A 237 ----DLTD-------------------------------LMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDV 280 (490)
T ss_dssp ----HHHH-------------------------------HHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEEC
T ss_pred ----HHHH-------------------------------HHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEEC
Confidence 1111 1112222223443 45677776432 444 7888999
Q ss_pred cEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHH
Q psy2343 271 DTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYI 339 (396)
Q Consensus 271 D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l 339 (396)
|.||+|||++|+.++++.. +..+ ++.+.+.+. +.++.|+||++||+... ...++.|..||+.+|.++
T Consensus 281 D~Vi~a~G~~p~~~ll~~~-l~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i 358 (490)
T 2bc0_A 281 DMVILAVGFRPNTTLGNGK-IDLFRNGAFLVNKR-QETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNA 358 (490)
T ss_dssp SEEEECCCEEECCGGGTTC-SCBCTTSCBCCCTT-CBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcChHHHHhh-hccCCCCCEEECCC-cccCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHh
Confidence 9999999999999988765 5553 355666554 57799999999999752 146788999999999999
Q ss_pred hccc
Q psy2343 340 QAFI 343 (396)
Q Consensus 340 ~~~~ 343 (396)
.|..
T Consensus 359 ~g~~ 362 (490)
T 2bc0_A 359 CGTD 362 (490)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8763
No 35
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=99.89 E-value=6.1e-24 Score=208.92 Aligned_cols=211 Identities=15% Similarity=0.079 Sum_probs=150.0
Q ss_pred CcEEEEEEEeCCeEEEEEccCcE--EEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCC---CCCCCCCeEEEEcCC
Q psy2343 71 NTEVINLEQYEDIWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS---PDQIRNKRVLVVGAG 145 (396)
Q Consensus 71 ~t~V~~v~~~~~~~~V~~~~g~~--~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~---~~~~~~k~VvVVG~G 145 (396)
..+|..++ .+.+.|.+++|++ +.||+||+|||+ .|..|++||.. .++++.++.. .....+|+|+|||+|
T Consensus 108 ~g~v~~id--~~~~~V~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~--~~~t~~~~~~~~~~l~~~~~~vvViGgG 181 (466)
T 3l8k_A 108 KGYVKIKD--PTHVIVKTDEGKEIEAETRYMIIASGA--ETAKLRLPGVE--YCLTSDDIFGYKTSFRKLPQDMVIIGAG 181 (466)
T ss_dssp SEEEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCE--EECCCCCTTGG--GSBCHHHHHSTTCSCCSCCSEEEEECCS
T ss_pred EeEEEEec--CCeEEEEcCCCcEEEEecCEEEECCCC--CccCCCCCCcc--ceEeHHHHHHHHHHHhhCCCeEEEECCC
Confidence 33566665 5688898888887 999999999998 89999999821 2455444431 222357999999999
Q ss_pred CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343 146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP 225 (396)
Q Consensus 146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 225 (396)
.+|+|+|..+++.+.+|+++.|.+.. +|.. +.. .+.+.+.
T Consensus 182 ~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~d~-----~~~~~l~------------------ 221 (466)
T 3l8k_A 182 YIGLEIASIFRLMGVQTHIIEMLDRA-LITL----------------EDQ-----DIVNTLL------------------ 221 (466)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSSSS-CTTS----------------CCH-----HHHHHHH------------------
T ss_pred HHHHHHHHHHHHcCCEEEEEEeCCcC-CCCC----------------CCH-----HHHHHHH------------------
Confidence 99999999999999999999997632 1110 000 1111111
Q ss_pred CCcccCccCchhhhcccCCCeEecCCcceEeC---Ce--EEec--CCc--EecCcEEEEccCCCCCCCC-CCcccccccC
Q psy2343 226 LDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---NI--VHFV--DDT--HIEVDTIIYATGYNRHFPF-IDKEKLEWKL 295 (396)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~---~~--v~~~--dG~--~~~~D~VI~aTG~~~~~~~-l~~~~~~~~~ 295 (396)
+.+. -++.....|+++++ +. |.++ ||+ ++++|.||+|||++|+..+ ++...+..+.
T Consensus 222 -------------~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~ 287 (466)
T 3l8k_A 222 -------------SILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISK 287 (466)
T ss_dssp -------------HHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCS
T ss_pred -------------hcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCC
Confidence 1111 13333445666654 22 6676 676 6899999999999999884 5555666654
Q ss_pred CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 296 GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 296 ~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+++.+. ..+.++.|+||++||+.......+.|..||+.+|..+.+.
T Consensus 288 ~Gi~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 288 TGIVVD-ETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp SSBCCC-TTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred CCEeEC-CCccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 445554 4557899999999999876677889999999999999875
No 36
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=99.89 E-value=9.3e-23 Score=199.77 Aligned_cols=234 Identities=13% Similarity=0.170 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 128 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~ 128 (396)
++..++...++++++. ++++++|++++.+.+.|.++.. ++.++.||+||+|||+ .|..|+++|.....++++..+
T Consensus 59 ~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~~~v~~~~~~ 134 (452)
T 3oc4_A 59 EARYITEEELRRQKIQ--LLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGA--SQFSTQIRGSQTEKLLKYKFL 134 (452)
T ss_dssp --CCCCHHHHHHTTEE--EECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCC--CBCCCCCBTTTCTTEEEGGGC
T ss_pred HhhcCCHHHHHHCCCE--EEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCc--ccCCCCCCCCCCCCEEEeCCH
Confidence 3333345555677775 7889999999988887877632 4556899999999999 899999999333456777666
Q ss_pred CCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 129 KSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 129 ~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
.+...+ .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+... |+. +.. .+.
T Consensus 135 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~----------------~d~-----~~~ 192 (452)
T 3oc4_A 135 SGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL-PKY----------------FDK-----EMV 192 (452)
T ss_dssp C----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTT----------------CCH-----HHH
T ss_pred HHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc-ccc----------------CCH-----HHH
Confidence 555432 57999999999999999999999999999999986421 110 000 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCe--EEecCCcEecCcEEEEcc
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNI--VHFVDDTHIEVDTIIYAT 277 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~--v~~~dG~~~~~D~VI~aT 277 (396)
+ .+.+.+.+..|++ ...|++++ ++. |.+.+| ++++|.||+||
T Consensus 193 ~-------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~ 240 (452)
T 3oc4_A 193 A-------------------------------EVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFAL 240 (452)
T ss_dssp H-------------------------------HHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECS
T ss_pred H-------------------------------HHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECc
Confidence 1 1122222334544 45677776 233 566666 89999999999
Q ss_pred CCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhccc
Q psy2343 278 GYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 278 G~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~~ 343 (396)
|++|+.++++.. +..+ ++.+.+.+ .+.++.|+||++||+.... ..++.|..||+.+|.++.|..
T Consensus 241 G~~p~~~~l~~~-~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~ 315 (452)
T 3oc4_A 241 NLHPQLAYLDKK-IQRNLDQTIAVDA-YLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT 315 (452)
T ss_dssp CCBCCCSSCCTT-SCBCTTSCBCCCT-TCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCChHHHHhh-hccCCCCCEEECc-CccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 999999988754 5543 45566654 4578999999999997532 367889999999999998763
No 37
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.89 E-value=3e-23 Score=203.98 Aligned_cols=272 Identities=17% Similarity=0.188 Sum_probs=165.3
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeE--EEEEccCc----EEEcCEEEEcccCCCCCCCCC
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIW--EVELSNGK----KKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~--~V~~~~g~----~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..|+++.++.+|+++++++++.. ++++++|++|+++ ++.| +|++.++. ++.||+||+|||. .|.+|.
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~--~p~~p~ 196 (463)
T 3s5w_A 121 TFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG--TPRIPQ 196 (463)
T ss_dssp CSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC--EECCCG
T ss_pred CCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC--CCCCcc
Confidence 35778999999999999999866 9999999999987 5555 67766664 7899999999998 888886
Q ss_pred CCCCccc--ceeecccCCCC-CCC-----CCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChh
Q psy2343 114 YSGYFSG--EILHSMDYKSP-DQI-----RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTP 183 (396)
Q Consensus 114 ~~g~~~g--~~~hs~~~~~~-~~~-----~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~ 183 (396)
....+.+ .++|+.++.+. ..+ ++|+|+|||+|.||+|+|.+|++. +.+|+++.|++. ++|.........
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~-~~p~~~~~~~~~ 275 (463)
T 3s5w_A 197 VFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA-LKPADDSPFVNE 275 (463)
T ss_dssp GGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS-CCBCCCCHHHHG
T ss_pred hhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC-CcCccCCccchh
Confidence 3334555 78999887663 344 689999999999999999999998 899999999876 344321100000
Q ss_pred H-------HHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch-----hhhcc-cCCCeEec-
Q psy2343 184 Q-------WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ-----ILYHI-GHGDILPK- 249 (396)
Q Consensus 184 ~-------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~~~i-~~g~i~~~- 249 (396)
. .+..++...+. .+.+. ... ..++.. .+.+.+. +.+.+ ....|++.
T Consensus 276 ~~~p~~~~~~~~l~~~~~~-----~~~~~----~~~--~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~v~i~~ 335 (463)
T 3s5w_A 276 VFAPKFTDLIYSREHAERE-----RLLRE----YHN--TNYSVV---------DTDLIERIYGVFYRQKVSGIPRHAFRC 335 (463)
T ss_dssp GGSHHHHHHHHHSCHHHHH-----HHHHH----TGG--GTSSCB---------CHHHHHHHHHHHHHHHHHCCCCSEEET
T ss_pred ccChhHHHHHhcCCHHHHH-----HHHHH----hhc--cCCCcC---------CHHHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 0 00011111100 11111 000 000000 0000000 11111 11344443
Q ss_pred -CCcceEeC--Ce--EEec---CCcE--ecCcEEEEccCCCCC--CCCCCcccccccCCccccccccccCC----CCcEE
Q psy2343 250 -DDIKNLNG--NI--VHFV---DDTH--IEVDTIIYATGYNRH--FPFIDKEKLEWKLGIPDLFIHIAPRN----LDNIF 313 (396)
Q Consensus 250 -~~i~~i~~--~~--v~~~---dG~~--~~~D~VI~aTG~~~~--~~~l~~~~~~~~~~~~~l~~~~~~~~----~p~l~ 313 (396)
..|++++. +. |.+. +|+. +++|.||+|||++++ .++|....... +.+.+.+++.... .|+||
T Consensus 336 ~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~If 413 (463)
T 3s5w_A 336 MTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIY 413 (463)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEE
T ss_pred CCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEE
Confidence 34666643 32 5665 7775 899999999999998 66776432221 4444444433222 57799
Q ss_pred EEecccCc-----CchhhHHHHHHHHHHHHHhc
Q psy2343 314 FFGFVNAA-----AGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 314 ~iG~~~~~-----~~~~~~ae~qa~~~a~~l~~ 341 (396)
++|++... ...-..+..+++.++..+..
T Consensus 414 a~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~~ 446 (463)
T 3s5w_A 414 AQGFSQASHGLSDTLLSVLPVRAEEISGSLYQH 446 (463)
T ss_dssp ESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHHH
T ss_pred EcCCCcccCCcCccchhHHHHHHHHHHHHHHhh
Confidence 99998631 12233455666655554433
No 38
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=99.89 E-value=1.1e-23 Score=207.39 Aligned_cols=235 Identities=18% Similarity=0.223 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-Ccccceeec
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS 125 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs 125 (396)
++..|++++++++++. ++++++|++|++..+.+.+.. .+|. .+.||+||+|||. .|..|++|| ...+ +++.
T Consensus 67 ~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~~ 141 (472)
T 3iwa_A 67 NVVRDPEFFRINKDVE--ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS--KANRPPVEGMDLAG-VTPV 141 (472)
T ss_dssp --------------CE--EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCSCTTTTSBT-EEEC
T ss_pred hhccCHHHHhhhcCcE--EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC--CcCCCCCCCCCCCC-EEEe
Confidence 3678888888888887 889999999998877777765 2354 6899999999998 899999999 4433 4443
Q ss_pred ccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343 126 MDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197 (396)
Q Consensus 126 ~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 197 (396)
....+.. ...+++|+|||+|.+|+|+|..+++. +.+|+++.|.+.. +|+. .+ .
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~-l~~~---~~-------------~-- 202 (472)
T 3iwa_A 142 TNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI-MPGF---TS-------------K-- 202 (472)
T ss_dssp CSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS-STTT---SC-------------H--
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc-cccc---cC-------------H--
Confidence 3322211 13478999999999999999999999 9999999987632 1110 00 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC-C-e--EEecCCcEecCc
Q psy2343 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG-N-I--VHFVDDTHIEVD 271 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~-~-~--v~~~dG~~~~~D 271 (396)
.+.+. +.+.+.+..|++ ...|++++. + . |.+.||+++++|
T Consensus 203 ---~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD 248 (472)
T 3iwa_A 203 ---SLSQM-------------------------------LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDAD 248 (472)
T ss_dssp ---HHHHH-------------------------------HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECS
T ss_pred ---HHHHH-------------------------------HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcC
Confidence 11111 111222223443 346777754 2 2 778899999999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHh
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~ 340 (396)
.||+|||++++.++++..++..+ ++.+.+... +.++.|+||++||+... ...++.|..||+.+|.+|.
T Consensus 249 ~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 327 (472)
T 3iwa_A 249 LVILAAGVSPNTQLARDAGLELDPRGAIIVDTR-MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLA 327 (472)
T ss_dssp EEEECSCEEECCHHHHHHTCCBCTTCCEECCTT-CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcCHHHHHhCCccCCCCCCEEECCC-cccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhc
Confidence 99999999999877765555554 355665544 57889999999999731 1356789999999999998
Q ss_pred ccc
Q psy2343 341 AFI 343 (396)
Q Consensus 341 ~~~ 343 (396)
|..
T Consensus 328 g~~ 330 (472)
T 3iwa_A 328 DGD 330 (472)
T ss_dssp TCC
T ss_pred CCC
Confidence 763
No 39
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=99.89 E-value=4.8e-24 Score=205.92 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=161.5
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCC
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSP 131 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~ 131 (396)
.+...+.+++++. ++. ++|+.|++..+ .|++.+++++.||+||+|||. .|+.|++|| ...+ +++.....+.
T Consensus 61 ~~~~~~~~~~~i~--~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~--~p~~~~i~g~~~~~-v~~~~~~~d~ 132 (404)
T 3fg2_P 61 FRPEKFFQDQAIE--LIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGA--RNRMLDVPNASLPD-VLYLRTLDES 132 (404)
T ss_dssp SSCHHHHHHTTEE--EEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCE--EECCCCSTTTTSTT-EECCSSHHHH
T ss_pred CCCHHHHHhCCCE--EEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCC--CccCCCCCCCCCCc-EEEECCHHHH
Confidence 3344555667765 666 89999987544 677888888999999999998 899999988 4333 3322211111
Q ss_pred -----CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHH
Q psy2343 132 -----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 206 (396)
Q Consensus 132 -----~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (396)
....+++|+|||+|.+|+|+|..+.+.+.+|+++.+.+.+. ++ .+.. .+.+
T Consensus 133 ~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~----------------~~~~-----~~~~-- 188 (404)
T 3fg2_P 133 EVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM-AR----------------VVTP-----EISS-- 188 (404)
T ss_dssp HHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-TT----------------TSCH-----HHHH--
T ss_pred HHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch-hh----------------ccCH-----HHHH--
Confidence 12258999999999999999999999999999999876321 10 0000 1111
Q ss_pred HHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEecCCcEecCcEEEEccCC
Q psy2343 207 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGY 279 (396)
Q Consensus 207 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~ 279 (396)
.+.+.+.+..|++ ...|++++++ +|.++||+++++|.||+|||+
T Consensus 189 -----------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 189 -----------------------------YFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp -----------------------------HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred -----------------------------HHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 1112222223443 3467777542 588999999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc----------hhhHHHHHHHHHHHHHhccc
Q psy2343 280 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG----------LGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~----------~~~~ae~qa~~~a~~l~~~~ 343 (396)
+++.++++...+..+++ +.+... +.++.|+||++||+..... .++.|..||+.+|++|.|..
T Consensus 240 ~p~~~l~~~~gl~~~~G-i~vd~~-~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 311 (404)
T 3fg2_P 240 IPNVEIAAAAGLPTAAG-IIVDQQ-LLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA 311 (404)
T ss_dssp EECCHHHHHTTCCBSSS-EEECTT-SBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred ccCHHHHHhCCCCCCCC-EEECCC-cccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence 99988887666666644 655544 4688999999999975322 37889999999999999864
No 40
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=99.89 E-value=1.9e-22 Score=187.86 Aligned_cols=231 Identities=15% Similarity=0.086 Sum_probs=158.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccceee
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILH 124 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~h 124 (396)
+..++.........++... +..+..+..... ....+...++++++||+||||||+ .|+.|++|| .+.+..++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~liiAtGs--~~~~~~ipG~~~~~~~~v~ 133 (312)
T 4gcm_A 60 TGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDK--GEYKVINFGNKELTAKAVIIATGA--EYKKIGVPGEQELGGRGVS 133 (312)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEECCCCEEEEC--SSCEEEECSSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEE
T ss_pred chHHHHHHHHHHHhhcccc--ccceeeeeeeee--ecceeeccCCeEEEeceeEEcccC--ccCcCCCCChhhhCCccEE
Confidence 5678888887777777654 555554444332 222344556777999999999998 899999999 56677777
Q ss_pred cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343 125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 204 (396)
Q Consensus 125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 204 (396)
++..++...+++|+|+|||+|.+|+|+|..+++.+.+|+++.|++... |.. ....
T Consensus 134 ~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~-~~~------------------------~~~~ 188 (312)
T 4gcm_A 134 YCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR-AQR------------------------ILQD 188 (312)
T ss_dssp SCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC-SCH------------------------HHHH
T ss_pred eeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC-cch------------------------hHHH
Confidence 777777777889999999999999999999999999999999986321 100 0001
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-----CcceEe----CC-eEEec--CCcEecCcE
Q psy2343 205 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-----DIKNLN----GN-IVHFV--DDTHIEVDT 272 (396)
Q Consensus 205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-----~i~~i~----~~-~v~~~--dG~~~~~D~ 272 (396)
..+ ....+.... .+...+ .. ..... ++..+++|.
T Consensus 189 ~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (312)
T 4gcm_A 189 RAF----------------------------------KNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADG 234 (312)
T ss_dssp HHH----------------------------------HCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSE
T ss_pred HHH----------------------------------HhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeee
Confidence 101 000111100 000000 00 11112 334589999
Q ss_pred EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343 273 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 273 VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
|++++|..++..++...++..+.+.+.+.+ .+.|+.|+||++||+... ..+...|..||+.+|..+...+
T Consensus 235 v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~-~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L 305 (312)
T 4gcm_A 235 VFIYIGMKPLTAPFKDLGITNDVGYIVTKD-DMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYI 305 (312)
T ss_dssp EEECSCEEESCGGGGGGTCBCTTSCBCCCT-TSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCcCchhHHhcceecCCCeEeeCC-CCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887666655556666655 457899999999999753 3467788899999998886543
No 41
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=99.88 E-value=4.3e-22 Score=194.92 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=160.6
Q ss_pred CChHHHHHHH-HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCC-Ccccce
Q psy2343 46 PNHSMMLDYL-RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG-YFSGEI 122 (396)
Q Consensus 46 p~~~~~~~Yl-~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~ 122 (396)
...+++..+. +++++++++. ++++++|+.++. +.+.|.+.++. ++.||+||+|||. .|+.|+++| ...+ +
T Consensus 55 ~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~--~~~~v~~~~g~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v 127 (449)
T 3kd9_A 55 STPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDT--GYVRVRENGGEKSYEWDYLVFANGA--SPQVPAIEGVNLKG-V 127 (449)
T ss_dssp -----------CTHHHHTTCE--EETTCEEEEECS--SEEEEECSSSEEEEECSEEEECCCE--EECCCSCBTTTSTT-E
T ss_pred CCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEec--CCCEEEECCceEEEEcCEEEECCCC--CCCCCCCCCCCCCC-E
Confidence 3444555444 5555788887 899999999874 45778777773 6899999999998 899999998 4333 3
Q ss_pred eecccCCC-------CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343 123 LHSMDYKS-------PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 195 (396)
Q Consensus 123 ~hs~~~~~-------~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 195 (396)
+......+ ...+.+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+... |. .+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~----------------~~~~ 190 (449)
T 3kd9_A 128 FTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVL-RR----------------SFDK 190 (449)
T ss_dssp ECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TT----------------TSCH
T ss_pred EEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc-hh----------------hcCH
Confidence 33222211 123478999999999999999999999999999999986321 11 0000
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC-CeEecCCcceEeCCe---EEecCCcEecCc
Q psy2343 196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNGNI---VHFVDDTHIEVD 271 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g-~i~~~~~i~~i~~~~---v~~~dG~~~~~D 271 (396)
.+.. .+.+.+... ++.....+.+++++. ..+.||+++++|
T Consensus 191 -----~~~~-------------------------------~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D 234 (449)
T 3kd9_A 191 -----EVTD-------------------------------ILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAE 234 (449)
T ss_dssp -----HHHH-------------------------------HHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTEEEECS
T ss_pred -----HHHH-------------------------------HHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCCEEECC
Confidence 1111 111222222 222345667776432 456788889999
Q ss_pred EEEEccCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccC------c----CchhhHHHHHHHHHHHHHh
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNA------A----AGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~------~----~~~~~~ae~qa~~~a~~l~ 340 (396)
.||+|||++|+.++++...++.+. +.+.+.. .+.++.|+||++||+.. + ...++.|..||+.+|.++.
T Consensus 235 ~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~ 313 (449)
T 3kd9_A 235 LVILATGIKPNIELAKQLGVRIGETGAIWTNE-KMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIA 313 (449)
T ss_dssp EEEECSCEEECCHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred EEEEeeCCccCHHHHHhCCccCCCCCCEEECC-CCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhc
Confidence 999999999998887765666543 4465554 45789999999999963 1 2467789999999999998
Q ss_pred ccc
Q psy2343 341 AFI 343 (396)
Q Consensus 341 ~~~ 343 (396)
|..
T Consensus 314 g~~ 316 (449)
T 3kd9_A 314 GKE 316 (449)
T ss_dssp TCC
T ss_pred CCC
Confidence 863
No 42
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.87 E-value=3.8e-22 Score=195.57 Aligned_cols=228 Identities=13% Similarity=0.139 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 129 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~ 129 (396)
+.+++...+++.++. ++.++.+. + +.+.+.|++.+| .++.||+||+|||+ .|..|+++|. ...++++.+..
T Consensus 93 l~~~~~~~~~~~gv~--~~~g~~~~-i--d~~~v~V~~~~G~~~i~~d~lViATGs--~p~~~~~~g~-~~~v~~~~~~~ 164 (455)
T 1ebd_A 93 LTGGVEGLLKGNKVE--IVKGEAYF-V--DANTVRVVNGDSAQTYTFKNAIIATGS--RPIELPNFKF-SNRILDSTGAL 164 (455)
T ss_dssp HHHHHHHHHHTTTCE--EEESEEEE-E--ETTEEEEEETTEEEEEECSEEEECCCE--EECCBTTBCC-CSSEECHHHHH
T ss_pred HHHHHHHHHHhCCCE--EEEEEEEE-c--cCCeEEEEeCCCcEEEEeCEEEEecCC--CCCCCCCCCc-cceEecHHHHh
Confidence 455567777777876 77776543 4 367788888777 57899999999999 8888888872 12366665554
Q ss_pred CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343 130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 209 (396)
Q Consensus 130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (396)
.... .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|. .+ . .+.+.+
T Consensus 165 ~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~~~~l--- 217 (455)
T 1ebd_A 165 NLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI-LSG----FE---------K---------QMAAII--- 217 (455)
T ss_dssp TCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STT----SC---------H---------HHHHHH---
T ss_pred cccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc-ccc----cC---------H---------HHHHHH---
Confidence 4332 4799999999999999999999999999999997632 221 01 0 111111
Q ss_pred hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--Ce--EEec---CCcEecCcEEEEccCCC
Q psy2343 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NI--VHFV---DDTHIEVDTIIYATGYN 280 (396)
Q Consensus 210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~--v~~~---dG~~~~~D~VI~aTG~~ 280 (396)
.+.+.+..|++ ...|+++++ +. +.+. +|+.+++|.||+|||++
T Consensus 218 ----------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~ 269 (455)
T 1ebd_A 218 ----------------------------KKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRR 269 (455)
T ss_dssp ----------------------------HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEE
T ss_pred ----------------------------HHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCC
Confidence 11111113333 345666653 22 3443 45679999999999999
Q ss_pred CCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 281 RHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 281 ~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|+.++ ++...+..+. +.+.+... +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 270 p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 270 PNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp ESCSSSSTTTTTCCBCTTSCBCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred cccCcCChhhcCCccCCCCCEeeCCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99888 4555565543 55666655 56899999999999876567788999999999999885
No 43
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=99.87 E-value=9.6e-23 Score=199.69 Aligned_cols=230 Identities=14% Similarity=0.165 Sum_probs=162.4
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-c--CcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-N--GKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYK 129 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~--g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~ 129 (396)
++...++++++. ++++++|..|+.+++.+.+... + +.++.||+||+|||+ .|..|+++| ... .++++..+.
T Consensus 63 ~~~~~~~~~gv~--~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~-~v~~~~~~~ 137 (452)
T 2cdu_A 63 SSPEELSNLGAN--VQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS--KPTVPPIPGIDSS-RVYLCKNYN 137 (452)
T ss_dssp CCHHHHHHTTCE--EEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTST-TEEECSSHH
T ss_pred cCHHHHHHcCCE--EEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC--CcCCCCCCCCCCC-CEEEeCcHH
Confidence 344555677876 8889999999877776666542 2 456899999999998 899999998 433 366655443
Q ss_pred CCCC-----CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343 130 SPDQ-----IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 204 (396)
Q Consensus 130 ~~~~-----~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 204 (396)
+... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|+ .+.. .+.+
T Consensus 138 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~----------------~~~~-----~~~~ 195 (452)
T 2cdu_A 138 DAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV-LYK----------------YFDK-----EFTD 195 (452)
T ss_dssp HHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST-TTT----------------TSCH-----HHHH
T ss_pred HHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch-hhh----------------hhhh-----hHHH
Confidence 3322 25799999999999999999999999999999987632 111 0000 1111
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--CeE--EecCCcEecCcEEEEccC
Q psy2343 205 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--NIV--HFVDDTHIEVDTIIYATG 278 (396)
Q Consensus 205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~~v--~~~dG~~~~~D~VI~aTG 278 (396)
. +.+.+++..|+ ....|++++. +.+ ...||+++++|.||+|||
T Consensus 196 ~-------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G 244 (452)
T 2cdu_A 196 I-------------------------------LAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIG 244 (452)
T ss_dssp H-------------------------------HHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred H-------------------------------HHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcC
Confidence 1 11112122333 3456777753 333 334888899999999999
Q ss_pred CCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhccc
Q psy2343 279 YNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 279 ~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
++|+.++++.. +..+ ++.+.+.++ +.++.|+||++||+... ...++.|..||+.+|.++.|..
T Consensus 245 ~~p~~~ll~~~-l~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 318 (452)
T 2cdu_A 245 FRPNTELLKGK-VAMLDNGAIITDEY-MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK 318 (452)
T ss_dssp EEECCGGGTTT-SCBCTTSCBCCCTT-SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCCHHHHHHh-hhcCCCCCEEECCC-cCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence 99999888765 6553 455666655 57899999999999753 1467899999999999998753
No 44
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=99.87 E-value=5.7e-23 Score=203.36 Aligned_cols=204 Identities=15% Similarity=0.120 Sum_probs=142.2
Q ss_pred CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCC-C--cccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHH
Q psy2343 81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSG-Y--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDA 155 (396)
Q Consensus 81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g-~--~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l 155 (396)
.+.+.|.+.+| .++.||+||||||+ .| |.+|| . +.+..++++.........+|+|+|||+|.+|+|+|..+
T Consensus 142 ~~~~~v~~~~g~~~~~~~d~lViATGs--~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l 217 (491)
T 3urh_A 142 QGKVSVTNEKGEEQVLEAKNVVIATGS--DV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVW 217 (491)
T ss_dssp SSEEEEECTTSCEEEEECSEEEECCCE--EC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHH
T ss_pred CCEEEEEeCCCceEEEEeCEEEEccCC--CC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHH
Confidence 56778877776 46899999999998 44 45666 3 56655555554444455689999999999999999999
Q ss_pred hcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCc
Q psy2343 156 SHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNS 235 (396)
Q Consensus 156 ~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 235 (396)
++.+.+|+++.+.+.. +|. .+. .+.+
T Consensus 218 ~~~g~~Vtlv~~~~~~-l~~----~d~------------------~~~~------------------------------- 243 (491)
T 3urh_A 218 ARLGAKVTVVEFLDTI-LGG----MDG------------------EVAK------------------------------- 243 (491)
T ss_dssp HHHTCEEEEECSSSSS-SSS----SCH------------------HHHH-------------------------------
T ss_pred HHcCCEEEEEeccccc-ccc----CCH------------------HHHH-------------------------------
Confidence 9999999999987632 111 010 1111
Q ss_pred hhhhcccCCCeEec--CCcceEeC--C--eEEecC---C--cEecCcEEEEccCCCCCCCCC--Cccccccc-CCccccc
Q psy2343 236 QILYHIGHGDILPK--DDIKNLNG--N--IVHFVD---D--THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLF 301 (396)
Q Consensus 236 ~~~~~i~~g~i~~~--~~i~~i~~--~--~v~~~d---G--~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~ 301 (396)
.+.+.+.+..|++. ..+++++. + .|.+.+ | +.+++|.||+|||++|+.++| ....+..+ ++.+.+.
T Consensus 244 ~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd 323 (491)
T 3urh_A 244 QLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEID 323 (491)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCC
T ss_pred HHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeEC
Confidence 11122222234433 34555542 2 255653 5 468999999999999998875 33445554 3456665
Q ss_pred cccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 302 ~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+. +.++.|+||++||+.......+.|..||+.+|..+.|..
T Consensus 324 ~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 364 (491)
T 3urh_A 324 RH-FQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364 (491)
T ss_dssp TT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CC-CCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 54 578999999999998666778899999999999998863
No 45
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.87 E-value=5.8e-22 Score=195.12 Aligned_cols=229 Identities=16% Similarity=0.108 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 128 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~ 128 (396)
+.+++...+++.++. +++++.+. + +.+.|.|++.+| .++.||+||+|||+ .|..|+++|.....++++.+.
T Consensus 98 l~~~~~~~~~~~gv~--~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs--~p~~p~~~g~~~~~v~~~~~~ 170 (470)
T 1dxl_A 98 LTRGIEGLFKKNKVT--YVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATGS--DVKSLPGVTIDEKKIVSSTGA 170 (470)
T ss_dssp HHHHHHHHHHHHTCE--EEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCCE--EECCBTTBCCCSSSEECHHHH
T ss_pred HHHHHHHHHHhCCCE--EEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCCC--CCCCCCCCCCCcccEEeHHHh
Confidence 344456667777876 77887654 3 356788887777 67899999999999 888888888211246676665
Q ss_pred CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343 129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 208 (396)
Q Consensus 129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (396)
..... .+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|.. + . .+.+.+
T Consensus 171 ~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~----~---------~---------~~~~~l-- 224 (470)
T 1dxl_A 171 LALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI-VPTM----D---------A---------EIRKQF-- 224 (470)
T ss_dssp TTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS-STTS----C---------H---------HHHHHH--
T ss_pred hhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc-cccc----c---------H---------HHHHHH--
Confidence 54433 4799999999999999999999999999999998632 1210 0 0 111111
Q ss_pred HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEec---CC--cEecCcEEEEcc
Q psy2343 209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV---DD--THIEVDTIIYAT 277 (396)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~---dG--~~~~~D~VI~aT 277 (396)
.+.+.+..|++ ...|.+++++ .|.+. || +.+++|.||+|+
T Consensus 225 -----------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~ 275 (470)
T 1dxl_A 225 -----------------------------QRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 275 (470)
T ss_dssp -----------------------------HHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred -----------------------------HHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECC
Confidence 11111122333 3356666543 24454 55 568999999999
Q ss_pred CCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 278 GYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 278 G~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|++|+..+ ++...+..++ +.+.+... +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus 276 G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 342 (470)
T 1dxl_A 276 GRTPFTSGLNLDKIGVETDKLGRILVNER-FSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK 342 (470)
T ss_dssp CEEECCTTSCCTTTTCCBCSSSCBCCCTT-CBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCcCCCCCCchhcCCccCCCCCEeECcC-CccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 99999887 5555566543 55766655 56899999999999876567788999999999999875
No 46
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=99.87 E-value=4e-22 Score=198.65 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=169.9
Q ss_pred CCCCCCCCChHHHHHHHHH-------HH-----HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 39 PDNYPVYPNHSMMLDYLRS-------YA-----KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 39 p~~~~~~p~~~~~~~Yl~~-------~~-----~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
+.....+++.+++.+++.. +. ++.++. ++++.+|+.++. ++|.+. +.++.||+||+|||+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~----~~v~~~-g~~~~~d~lViATGs- 184 (523)
T 1mo9_A 113 PDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN----HTVEAA-GKVFKAKNLILAVGA- 184 (523)
T ss_dssp CCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET----TEEEET-TEEEEBSCEEECCCE-
T ss_pred HHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC----CEEEEC-CEEEEeCEEEECCCC-
Confidence 4444456678888888864 33 566775 665778877763 356665 667899999999998
Q ss_pred CCCCCCCCCC-CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhH
Q psy2343 107 RVARYPNYSG-YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ 184 (396)
Q Consensus 107 ~~p~~P~~~g-~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~ 184 (396)
.|..|+++| ... .++++.++. ......+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|. .+.
T Consensus 185 -~p~~p~i~G~~~~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~-l~~----~~~-- 255 (523)
T 1mo9_A 185 -GPGTLDVPGVNAK-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL-KLI----KDN-- 255 (523)
T ss_dssp -ECCCCCSTTTTSB-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT-TTC----CSH--
T ss_pred -CCCCCCCCCcccC-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc-ccc----ccH--
Confidence 899999998 332 366766665 444455699999999999999999999999999999987631 111 010
Q ss_pred HHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C--
Q psy2343 185 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N-- 258 (396)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~-- 258 (396)
.+.+. +.+.+.+..|++ ...|++++. +
T Consensus 256 ----------------~~~~~-------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~ 288 (523)
T 1mo9_A 256 ----------------ETRAY-------------------------------VLDRMKEQGMEIISGSNVTRIEEDANGR 288 (523)
T ss_dssp ----------------HHHHH-------------------------------HHHHHHHTTCEEESSCEEEEEEECTTSB
T ss_pred ----------------HHHHH-------------------------------HHHHHHhCCcEEEECCEEEEEEEcCCCc
Confidence 11111 111111123333 334666643 2
Q ss_pred ----eEEecCCc-EecCcEEEEccCCCCCCC-CCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHH
Q psy2343 259 ----IVHFVDDT-HIEVDTIIYATGYNRHFP-FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQ 331 (396)
Q Consensus 259 ----~v~~~dG~-~~~~D~VI~aTG~~~~~~-~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~q 331 (396)
.|.+.||+ ++++|.||+|||++|+.. +++..+++.+ ++.+.+.+. +.++.|+||++||+.......+.|..|
T Consensus 289 v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~ 367 (523)
T 1mo9_A 289 VQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEY-LQTSVPNVYAVGDLIGGPMEMFKARKS 367 (523)
T ss_dssp EEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHH
T ss_pred eEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCC-CccCCCCEEEEeecCCCcccHHHHHHH
Confidence 36677887 799999999999999987 6776666654 455666554 568999999999998766678899999
Q ss_pred HHHHHHHHhcc
Q psy2343 332 GQFIRSYIQAF 342 (396)
Q Consensus 332 a~~~a~~l~~~ 342 (396)
|+.+|.++.|.
T Consensus 368 g~~aa~~i~g~ 378 (523)
T 1mo9_A 368 GCYAARNVMGE 378 (523)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999874
No 47
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=99.87 E-value=9.5e-22 Score=194.93 Aligned_cols=230 Identities=12% Similarity=0.069 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEe----CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-Cccccee
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL 123 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~ 123 (396)
+..++..+++++++. ++.++ ++.++.. ++.+.|.+++|+ .+.||+||+|||. .|..|+++| ... .++
T Consensus 97 ~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs--~p~~p~i~g~~~~-~v~ 170 (499)
T 1xdi_A 97 QSADITAQLLSMGVQ--VIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA--SPRILPSAQPDGE-RIL 170 (499)
T ss_dssp HHHHHHHHHHHTTCE--EEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE--EECCCGGGCCCSS-SEE
T ss_pred HHHHHHHHHHhCCCE--EEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC--CCCCCCCCCCCcC-cEE
Confidence 334456777777876 66664 6666542 256777777776 6899999999998 889888888 322 366
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 203 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 203 (396)
++.+...... .+++|+|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|. .+. .+.
T Consensus 171 ~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~----~d~------------------~~~ 226 (499)
T 1xdi_A 171 TWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV-LPY----EDA------------------DAA 226 (499)
T ss_dssp EGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS-SCC----SSH------------------HHH
T ss_pred ehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc-ccc----cCH------------------HHH
Confidence 7666555433 4689999999999999999999999999999987632 121 010 111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEcc
Q psy2343 204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYAT 277 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aT 277 (396)
.. +.+.+....|++ ...|++++.+ .|.+.||+++++|.||+|+
T Consensus 227 ~~-------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~ 275 (499)
T 1xdi_A 227 LV-------------------------------LEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTI 275 (499)
T ss_dssp HH-------------------------------HHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECC
T ss_pred HH-------------------------------HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECC
Confidence 11 111111123333 3456666532 2556788889999999999
Q ss_pred CCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 278 GYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 278 G~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|++|+.++ ++..+++.+. +.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus 276 G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 276 GSVPNTSGLGLERVGIQLGRGNYLTVDRV-SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp CEEECCSSSCTTTTTCCCBTTTBCCCCSS-SBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCCCcCCchhcCceECCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 99999988 5555566554 55666655 57899999999999876567788999999999999986
No 48
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=99.87 E-value=8.7e-22 Score=194.03 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=156.6
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-C-cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-G-KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD 132 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g-~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~ 132 (396)
+..++++.++. +++++. ..+ +.+.|.|++.+ + +++.||+||+|||+ .|..|+++|.....++|+.++....
T Consensus 103 ~~~~~~~~gv~--~~~g~~-~~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs--~p~~p~i~g~~~~~v~t~~~~~~~~ 175 (474)
T 1zmd_A 103 IAHLFKQNKVV--HVNGYG-KIT--GKNQVTATKADGGTQVIDTKNILIATGS--EVTPFPGITIDEDTIVSSTGALSLK 175 (474)
T ss_dssp HHHHHHHTTCE--EEESEE-EEE--ETTEEEEECTTSCEEEEEEEEEEECCCE--EECCCTTCCCCSSSEECHHHHTTCS
T ss_pred HHHHHHhCCCE--EEEEEE-EEe--cCCEEEEEecCCCcEEEEeCEEEECCCC--CCCCCCCCCCCcCcEEcHHHHhhcc
Confidence 35566667776 666653 334 36778888776 4 46899999999999 8898988882122367777665543
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 212 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (396)
. .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|+. .+ . .+.+.
T Consensus 176 ~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~---~~---------~---------~~~~~------- 225 (474)
T 1zmd_A 176 K-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV-GGVG---ID---------M---------EISKN------- 225 (474)
T ss_dssp S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-SCSS---CC---------H---------HHHHH-------
T ss_pred c-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc-CCcc---cC---------H---------HHHHH-------
Confidence 3 4689999999999999999999999999999998632 2210 01 0 11111
Q ss_pred CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC--e-EEe-------cCCcEecCcEEEEccCCC
Q psy2343 213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN--I-VHF-------VDDTHIEVDTIIYATGYN 280 (396)
Q Consensus 213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~--~-v~~-------~dG~~~~~D~VI~aTG~~ 280 (396)
+.+.+.+..|++ ...|++++.+ + +.+ .+|+++++|.||+|+|++
T Consensus 226 ------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~ 281 (474)
T 1zmd_A 226 ------------------------FQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRR 281 (474)
T ss_dssp ------------------------HHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred ------------------------HHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence 111111123343 2346666432 2 332 356679999999999999
Q ss_pred CCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 281 RHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 281 ~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
|+.++| +...+..+ .+.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 282 p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 282 PFTKNLGLEELGIELDPRGRIPVNTR-FQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp ECCTTSSHHHHTCCCCTTSCCCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcCCchhcCCccCCCCCEEECcC-CccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 998874 34445554 355666665 46899999999999876667789999999999999886
No 49
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=99.87 E-value=1.7e-21 Score=180.84 Aligned_cols=230 Identities=14% Similarity=0.165 Sum_probs=163.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 123 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~ 123 (396)
+.+++.+.....+.+++.. ..++.+|..+... ++.|+|.+.+++++.||+||||||+ .|+.|++|| .+.+..+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs--~p~~p~i~G~~~~~~~~v 133 (304)
T 4fk1_A 58 KPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM--QEEFPSIPNVREYYGKSL 133 (304)
T ss_dssp CHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC--EEECCSCTTHHHHBTTTE
T ss_pred CHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC--ccccccccCcccccccee
Confidence 4678888877777776543 3445566676664 6779999999999999999999999 899999999 5666666
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcH-HHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSG-CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa-~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+.+...+...+++++++|||+|..+ .++|..+.+.+++|+++.|.... .. .+
T Consensus 134 ~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~----------------------~~-----~~ 186 (304)
T 4fk1_A 134 FSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL----------------------SQ-----TI 186 (304)
T ss_dssp ESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC----------------------CH-----HH
T ss_pred eeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc----------------------hh-----hh
Confidence 6666666667789999999999764 67777777788999998876421 00 11
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC-----CeEEecCCcEecCcEEEEc
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG-----NIVHFVDDTHIEVDTIIYA 276 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~-----~~v~~~dG~~~~~D~VI~a 276 (396)
.+.+. ...+.+ ...++.+.+ ..|.+.||+.+++|.+|++
T Consensus 187 ~~~l~-----------------------------------~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~ 231 (304)
T 4fk1_A 187 MDELS-----------------------------------NKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIV 231 (304)
T ss_dssp HHHHH-----------------------------------TTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEEC
T ss_pred hhhhh-----------------------------------ccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeee
Confidence 11111 011111 112333332 3588999999999999999
Q ss_pred cCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343 277 TGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 277 TG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+|..++..++...+++.+. +.+.+.+ .+.|+.|+||++||+...+ .++..|..|++.+|..+...+
T Consensus 232 ~g~~~~~~~~~~~g~~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 232 PTFFRPNQFIEQLGCELQSNGTFVIDD-FGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp CEEECSSCHHHHTTCCCCTTSSSCSST-TCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCChhhhhcCeEECCCCCEEECc-CCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9888777777766666644 4465554 4589999999999997432 346678889999888776543
No 50
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=99.87 E-value=3.4e-21 Score=189.31 Aligned_cols=227 Identities=15% Similarity=0.157 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 128 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~ 128 (396)
+.+++...+++.++. +++++.+. + +.+.++|.+.+| .++.||+||+|||+ .|..|+++|. ...++++.+.
T Consensus 93 l~~~l~~~~~~~gv~--~~~g~~~~-i--d~~~v~V~~~~G~~~~~~~d~lViAtG~--~~~~~~~~g~-~~~~~~~~~~ 164 (464)
T 2a8x_A 93 RVAGVHFLMKKNKIT--EIHGYGTF-A--DANTLLVDLNDGGTESVTFDNAIIATGS--STRLVPGTSL-SANVVTYEEQ 164 (464)
T ss_dssp HHHHHHHHHHHTTCE--EECEEEEE-S--SSSEEEEEETTSCCEEEEEEEEEECCCE--EECCCTTCCC-BTTEECHHHH
T ss_pred HHHHHHHHHHhCCCE--EEEeEEEE-e--cCCeEEEEeCCCceEEEEcCEEEECCCC--CCCCCCCCCC-CceEEecHHH
Confidence 444566777777776 66666543 2 456788888777 67899999999999 7888888872 1236666555
Q ss_pred CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343 129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 208 (396)
Q Consensus 129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (396)
..... .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+. ++|.. + ..+.. .+.+.
T Consensus 165 ~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~----~---------~~~~~-----~l~~~--- 221 (464)
T 2a8x_A 165 ILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR-ALPNE----D---------ADVSK-----EIEKQ--- 221 (464)
T ss_dssp HTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTS----C---------HHHHH-----HHHHH---
T ss_pred hhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc-ccccc----C---------HHHHH-----HHHHH---
Confidence 44332 478999999999999999999999999999999863 22211 1 00000 11111
Q ss_pred HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEec-CC--cEecCcEEEEccCC
Q psy2343 209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV-DD--THIEVDTIIYATGY 279 (396)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~-dG--~~~~~D~VI~aTG~ 279 (396)
+....|++ ...|++++++ .+.+. || +.+++|.||+|||+
T Consensus 222 --------------------------------l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 269 (464)
T 2a8x_A 222 --------------------------------FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF 269 (464)
T ss_dssp --------------------------------HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred --------------------------------HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence 11112333 3456666532 24454 67 56899999999999
Q ss_pred CCCCCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343 280 NRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 280 ~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~ 341 (396)
+|+..+| +...+..++ +.+.+.++ +.++.|+||++||+.......+.|..||+.+|.++.|
T Consensus 270 ~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 270 APNVEGYGLDKAGVALTDRKAIGVDDY-MRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp EECCSSSCHHHHTCCBCTTSSBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCCchhcCCccCCCCCEeECcC-CccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 9998884 444455543 55776665 4689999999999987666778899999999999998
No 51
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=99.87 E-value=2.9e-22 Score=195.98 Aligned_cols=233 Identities=17% Similarity=0.185 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-Ccccceee
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILH 124 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~h 124 (396)
+++..++...++++++. ++++++|+.|+.+.+.+.+.. .+|+ ++.||+||+|||+ .|..|++|| ...+ ++|
T Consensus 56 ~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~ 130 (447)
T 1nhp_A 56 NSVRYMTGEKMESRGVN--VFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA--VPFELDIPGKDLDN-IYL 130 (447)
T ss_dssp GGSBSCCHHHHHHTTCE--EEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCSTTTTSBS-EEC
T ss_pred HHhhcCCHHHHHHCCCE--EEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC--CcCCCCCCCCCCCC-eEE
Confidence 34444445556677876 788999999987777666654 3354 3789999999998 899999999 4433 666
Q ss_pred cccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343 125 SMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197 (396)
Q Consensus 125 s~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 197 (396)
+.++.+.. ...+++|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|+. +..
T Consensus 131 ~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~~~-- 191 (447)
T 1nhp_A 131 MRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVY----------------LDK-- 191 (447)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTTT----------------CCH--
T ss_pred ECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc-cccc----------------CCH--
Confidence 54443221 126899999999999999999999999999999987631 1110 000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe----EEecCCcEecCc
Q psy2343 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI----VHFVDDTHIEVD 271 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~----v~~~dG~~~~~D 271 (396)
.+.+ .+.+.+.+..|++ ...|++++.++ |.+ +|+.+++|
T Consensus 192 ---~~~~-------------------------------~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d 236 (447)
T 1nhp_A 192 ---EFTD-------------------------------VLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDAD 236 (447)
T ss_dssp ---HHHH-------------------------------HHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECS
T ss_pred ---HHHH-------------------------------HHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECC
Confidence 1111 1122222234554 34677776432 444 67789999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHh
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~ 340 (396)
.||+|||++|+.++++.. ++.+ ++.+.+... +.++.|+||++||+... ...++.|..||+.+|.++.
T Consensus 237 ~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 314 (447)
T 1nhp_A 237 LVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE 314 (447)
T ss_dssp EEEECSCEEESCGGGTTT-SCBCTTSCBCCCTT-CBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred EEEECcCCCCChHHHHhh-hhhcCCCcEEECcc-ccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence 999999999998888765 5553 345666555 57889999999999752 1357889999999999998
Q ss_pred cc
Q psy2343 341 AF 342 (396)
Q Consensus 341 ~~ 342 (396)
|.
T Consensus 315 g~ 316 (447)
T 1nhp_A 315 EP 316 (447)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 52
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=99.86 E-value=3.5e-22 Score=197.08 Aligned_cols=229 Identities=15% Similarity=0.225 Sum_probs=160.0
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYK 129 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~ 129 (396)
+.+.+.+++++. ++++++|+.|+.+.+.+.+.. .+|+ ++.||+||+|||+ .|+.|+++| ...+ +++...+.
T Consensus 98 ~~~~~~~~~gv~--~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~~~~~~ 172 (480)
T 3cgb_A 98 NVKTFRDKYGID--AKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV--RPVMPEWEGRDLQG-VHLLKTIP 172 (480)
T ss_dssp CHHHHHHTTCCE--EESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCBTTTSBT-EECCSSHH
T ss_pred CHHHHHhhcCCE--EEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC--cccCCCCCCccCCC-EEEeCCHH
Confidence 345555677876 888999999998777777765 3465 6899999999998 899999998 4333 55543332
Q ss_pred CCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343 130 SPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202 (396)
Q Consensus 130 ~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 202 (396)
+.. ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|. .+ . .+
T Consensus 173 ~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~ 229 (480)
T 3cgb_A 173 DAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI-GTI----YD---------G---------DM 229 (480)
T ss_dssp HHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT-TSS----SC---------H---------HH
T ss_pred HHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch-hhc----CC---------H---------HH
Confidence 221 126899999999999999999999999999999987631 110 00 0 11
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe-E--EecCCcEecCcEEEEcc
Q psy2343 203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI-V--HFVDDTHIEVDTIIYAT 277 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~-v--~~~dG~~~~~D~VI~aT 277 (396)
.+.+ .+.+.+..|++ ...|+++++++ + ...++..+++|.||+||
T Consensus 230 ~~~l-------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~ 278 (480)
T 3cgb_A 230 AEYI-------------------------------YKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSV 278 (480)
T ss_dssp HHHH-------------------------------HHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECS
T ss_pred HHHH-------------------------------HHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECc
Confidence 1111 11111113333 34566665332 2 23355679999999999
Q ss_pred CCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhcc
Q psy2343 278 GYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 278 G~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~ 342 (396)
|++++.++++...+..+ ++.+.+... +.++.|+||++||+.... ..++.|..||+.+|.++.|.
T Consensus 279 G~~p~~~~l~~~g~~~~~~G~I~Vd~~-~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 353 (480)
T 3cgb_A 279 GVKPNTDFLEGTNIRTNHKGAIEVNAY-MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK 353 (480)
T ss_dssp CEEESCGGGTTSCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcChHHHHhCCcccCCCCCEEECCC-ccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC
Confidence 99999888877666654 355666655 577899999999997421 35788999999999999875
No 53
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=99.86 E-value=1.1e-22 Score=197.89 Aligned_cols=226 Identities=14% Similarity=0.085 Sum_probs=158.6
Q ss_pred HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccc-c-eeecccCCCC--
Q psy2343 57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-E-ILHSMDYKSP-- 131 (396)
Q Consensus 57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g-~-~~hs~~~~~~-- 131 (396)
++++++++. ++++++|+.|++.+. +|++++|+++.||+||+|||. .|+.|+++| .+.+ . +++.....+.
T Consensus 68 ~~~~~~gv~--~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~--~p~~~~i~G~~~~~~~~v~~~~~~~d~~~ 141 (431)
T 1q1r_A 68 DAYAAQNIQ--LLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGG--RPRPLPVASGAVGKANNFRYLRTLEDAEC 141 (431)
T ss_dssp HHHHHTTEE--EECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECCCGGGTTHHHHSTTEEESSSHHHHHH
T ss_pred HHHHhCCCE--EEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCC--CccCCCCCCcccCCCceEEEECCHHHHHH
Confidence 444567776 888999999987543 788888888999999999999 899998888 4333 1 3332222111
Q ss_pred ---CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343 132 ---DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 208 (396)
Q Consensus 132 ---~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (396)
....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +|+. .+ . .+...+
T Consensus 142 l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~-l~~~---~~---------~---------~~~~~l-- 197 (431)
T 1q1r_A 142 IRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV-LERV---TA---------P---------PVSAFY-- 197 (431)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST-TTTT---SC---------H---------HHHHHH--
T ss_pred HHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc-ccch---hh---------H---------HHHHHH--
Confidence 1125899999999999999999999999999999987631 1110 00 0 111111
Q ss_pred HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC----C---eEEecCCcEecCcEEEEccCC
Q psy2343 209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----N---IVHFVDDTHIEVDTIIYATGY 279 (396)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~----~---~v~~~dG~~~~~D~VI~aTG~ 279 (396)
.+.+.+..|+ ....|+++++ + .|.+.||+.+++|.||+|+|+
T Consensus 198 -----------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 198 -----------------------------EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp -----------------------------HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred -----------------------------HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 1111111233 3345666653 2 478899999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhccc
Q psy2343 280 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+++.++++...+..++ ++.+... +.++.|+||++||+.... ..++.|..||+.+|.+|.|..
T Consensus 249 ~p~~~l~~~~gl~~~~-gi~Vd~~-~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 320 (431)
T 1q1r_A 249 IPNCELASAAGLQVDN-GIVINEH-MQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV 320 (431)
T ss_dssp EECCHHHHHTTCCBSS-SEECCTT-SBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred CcCcchhhccCCCCCC-CEEECCC-cccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence 9998887766666654 4665554 578899999999997532 146789999999999998864
No 54
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=99.86 E-value=2.5e-22 Score=192.59 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=165.4
Q ss_pred ChHHHH-HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeec
Q psy2343 47 NHSMML-DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS 125 (396)
Q Consensus 47 ~~~~~~-~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs 125 (396)
...++. .++..+++++++. ++++++|+.++.+. ++|++.++ ++.||+||+|||+ .|..|+++|.....++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~--~~v~~~~~-~~~~d~lviAtG~--~p~~p~i~g~~~~~v~~~ 129 (384)
T 2v3a_A 57 DADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPGH--QRIWIGEE-EVRYRDLVLAWGA--EPIRVPVEGDAQDALYPI 129 (384)
T ss_dssp CHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGGG--TEEEETTE-EEECSEEEECCCE--EECCCCCBSTTTTCEEEC
T ss_pred CHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECCC--CEEEECCc-EEECCEEEEeCCC--CcCCCCCCCcCcCCEEEE
Confidence 345554 3678888888886 77889999988643 46666544 5899999999999 899999998332346666
Q ss_pred ccCCCCC-----CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343 126 MDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200 (396)
Q Consensus 126 ~~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 200 (396)
.++.+.. ...+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|.. .+ .
T Consensus 130 ~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~---~~---------~--------- 187 (384)
T 2v3a_A 130 NDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV-MPGL---LH---------P--------- 187 (384)
T ss_dssp SSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STTT---SC---------H---------
T ss_pred CCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch-hhcc---cC---------H---------
Confidence 5543321 124899999999999999999999999999999987631 1110 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--C--eEEecCCcEecCcEEE
Q psy2343 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--N--IVHFVDDTHIEVDTII 274 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~--~v~~~dG~~~~~D~VI 274 (396)
.+.+. +.+.+....|+ ....|++++. + .|.+.||+.+++|.||
T Consensus 188 ~~~~~-------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv 236 (384)
T 2v3a_A 188 AAAKA-------------------------------VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVV 236 (384)
T ss_dssp HHHHH-------------------------------HHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred HHHHH-------------------------------HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEE
Confidence 11111 11112222333 3445666653 2 4778899999999999
Q ss_pred EccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcc
Q psy2343 275 YATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 275 ~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+|||++++.++++...+..+++ +.+..+ +.++.|+||++||+... ...+..+..||+.+|.++.|.
T Consensus 237 ~a~G~~p~~~l~~~~g~~~~~g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 237 SAVGLRPRTELAFAAGLAVNRG-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp ECSCEEECCHHHHHTTCCBSSS-EEECTT-CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred ECcCCCcCHHHHHHCCCCCCCC-EEECCC-CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence 9999999987776666666544 666655 56899999999999742 124667899999999999875
No 55
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=99.86 E-value=9.2e-22 Score=194.11 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=155.5
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cE------EEcCEEEEcccCCCCCCCCCCCC-Cccc-ceee
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KK------KKYDFIAVCNGAQRVARYPNYSG-YFSG-EILH 124 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~------~~~d~vvvAtG~~~~p~~P~~~g-~~~g-~~~h 124 (396)
+...+++.++. +++++.+.. +.+.++|++.+| ++ +.||+||+|||+ .|. .+|| .+.+ .++|
T Consensus 102 ~~~~~~~~gv~--~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs--~p~--~~~g~~~~~~~v~~ 172 (478)
T 1v59_A 102 IELLFKKNKVT--YYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGS--EVT--PFPGIEIDEEKIVS 172 (478)
T ss_dssp HHHHHHHTTCE--EEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCE--EEC--CCTTCCCCSSSEEC
T ss_pred HHHHHHhCCCE--EEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECcCC--CCC--CCCCCCCCCceEEc
Confidence 44556667776 777776542 456788887766 56 899999999998 552 3455 4444 4667
Q ss_pred cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343 125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 204 (396)
Q Consensus 125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 204 (396)
+.+...... .+|+|+|||+|.+|+|+|..|++.+.+|+++.|++.. +|.. + . .+..
T Consensus 173 ~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~---------~---------~~~~ 228 (478)
T 1v59_A 173 STGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI-GASM----D---------G---------EVAK 228 (478)
T ss_dssp HHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-SSSS----C---------H---------HHHH
T ss_pred HHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc-cccc----C---------H---------HHHH
Confidence 666555433 4799999999999999999999999999999998632 1210 0 0 1111
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC----C--eEEec-----CCcEecCc
Q psy2343 205 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG----N--IVHFV-----DDTHIEVD 271 (396)
Q Consensus 205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~----~--~v~~~-----dG~~~~~D 271 (396)
. +.+.+.+..|++. ..|++++. + .|.+. +|+.+++|
T Consensus 229 ~-------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D 277 (478)
T 1v59_A 229 A-------------------------------TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAE 277 (478)
T ss_dssp H-------------------------------HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEES
T ss_pred H-------------------------------HHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECC
Confidence 1 1111111234432 34566643 2 35555 45679999
Q ss_pred EEEEccCCCCCCC--CCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 272 TIIYATGYNRHFP--FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 272 ~VI~aTG~~~~~~--~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.||+|||++|+.+ +++...+..+ ++.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.+.
T Consensus 278 ~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 278 VLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp EEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCcCCCCCCchhcCceeCCCCCEeECcC-CccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9999999999987 6776666665 455666655 46889999999999876667789999999999999875
No 56
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.6e-21 Score=187.89 Aligned_cols=222 Identities=19% Similarity=0.148 Sum_probs=151.4
Q ss_pred HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCC-CCCCCcccceeecccCCCCCC
Q psy2343 57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYP-NYSGYFSGEILHSMDYKSPDQ 133 (396)
Q Consensus 57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P-~~~g~~~g~~~hs~~~~~~~~ 133 (396)
..++..++. +..+ +++.+ +.+.+.|.+.+|+ ++.||+||+|||+ .|..| ++||.- .++++.++... .
T Consensus 113 ~~~~~~gv~--~~~g-~~~~i--~~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~~i~g~~--~~~~~~~~~~l-~ 182 (479)
T 2hqm_A 113 KNLEKEKVD--VVFG-WARFN--KDGNVEVQKRDNTTEVYSANHILVATGG--KAIFPENIPGFE--LGTDSDGFFRL-E 182 (479)
T ss_dssp HHHHHTTEE--EEEE-EEEEC--TTSCEEEEESSSCCEEEEEEEEEECCCE--EECCCTTSTTGG--GSBCHHHHHHC-S
T ss_pred HHHHhCCCE--EEEe-EEEEe--eCCEEEEEeCCCcEEEEEeCEEEEcCCC--CCCCCCCCCCcc--cccchHHHhcc-c
Confidence 334444543 3333 34443 2456778777776 7899999999998 89999 888821 23444333222 2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
..+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+... |.. + . .+.+.
T Consensus 183 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~----d---------~---------~~~~~-------- 231 (479)
T 2hqm_A 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKF----D---------E---------CIQNT-------- 231 (479)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTS----C---------H---------HHHHH--------
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-ccc----C---------H---------HHHHH--------
Confidence 247899999999999999999999999999999986321 210 1 0 11111
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC------CeEEecCC-cEecCcEEEEccCCCCCCC
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG------NIVHFVDD-THIEVDTIIYATGYNRHFP 284 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~------~~v~~~dG-~~~~~D~VI~aTG~~~~~~ 284 (396)
+.+.+....|++ ...|+++++ ..|.++|| +.+++|.||+|||++|+..
T Consensus 232 -----------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~ 288 (479)
T 2hqm_A 232 -----------------------ITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLG 288 (479)
T ss_dssp -----------------------HHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCC
T ss_pred -----------------------HHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccc
Confidence 111111113333 345666653 14778899 7899999999999999986
Q ss_pred C-CCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 285 F-IDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 285 ~-l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+ ++..+++.+ ++.+.+.+. +.++.|+||++||+......++.|..||+.+|.++.+..
T Consensus 289 l~l~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (479)
T 2hqm_A 289 MGSENVGIKLNSHDQIIADEY-QNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPE 348 (479)
T ss_dssp SSGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCG
T ss_pred cChhhcCceECCCCCEeECCC-CccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 5 565556654 355666555 478999999999997655678899999999999998753
No 57
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=99.86 E-value=1.5e-21 Score=192.13 Aligned_cols=226 Identities=11% Similarity=0.049 Sum_probs=156.9
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCC
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYK 129 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~ 129 (396)
.++..++++.++. +++++.+ .++ .+.++|.+.+| .++.||+||+|||+ .|..|+++| ... .++++.++.
T Consensus 97 ~~~~~~~~~~~v~--~~~g~~~-~i~--~~~~~v~~~~G~~~~~~~d~lviAtG~--~p~~p~~~g~~~~-~v~t~~~~~ 168 (468)
T 2qae_A 97 GGVEYLFKKNKVT--YYKGEGS-FET--AHSIRVNGLDGKQEMLETKKTIIATGS--EPTELPFLPFDEK-VVLSSTGAL 168 (468)
T ss_dssp HHHHHHHHHHTCE--EEEEEEE-EEE--TTEEEEEETTSCEEEEEEEEEEECCCE--EECCBTTBCCCSS-SEECHHHHH
T ss_pred HHHHHHHHhCCCE--EEEEEEE-Eee--CCEEEEEecCCceEEEEcCEEEECCCC--CcCCCCCCCCCcC-ceechHHHh
Confidence 3445666677776 6666543 343 57788888777 67899999999999 888888888 322 366666554
Q ss_pred CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343 130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 209 (396)
Q Consensus 130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (396)
.... .+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|. .+ . .+.+.
T Consensus 169 ~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~----~d---------~---------~~~~~---- 220 (468)
T 2qae_A 169 ALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC-APT----LD---------E---------DVTNA---- 220 (468)
T ss_dssp TCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STT----SC---------H---------HHHHH----
T ss_pred hccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc-ccc----CC---------H---------HHHHH----
Confidence 4333 5799999999999999999999999999999998632 221 01 0 11111
Q ss_pred hcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeEe--cCCcceEeCC----eEEec--CC--cEecCcEEEEccC
Q psy2343 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILP--KDDIKNLNGN----IVHFV--DD--THIEVDTIIYATG 278 (396)
Q Consensus 210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~~--~~~i~~i~~~----~v~~~--dG--~~~~~D~VI~aTG 278 (396)
+.+.+ ....|++ ...|++++++ .|.+. || +.+++|.||+|+|
T Consensus 221 ---------------------------l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G 273 (468)
T 2qae_A 221 ---------------------------LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVG 273 (468)
T ss_dssp ---------------------------HHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSC
T ss_pred ---------------------------HHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCC
Confidence 11112 1123443 3456666532 24555 77 5689999999999
Q ss_pred CCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhcc
Q psy2343 279 YNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 279 ~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
++|+.++| +...+..+ .+.+.+... +.++.|+||++||+.. .....+.|..||+.+|..+.+.
T Consensus 274 ~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 274 RRPFTGGLGLDKINVAKNERGFVKIGDH-FETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK 340 (468)
T ss_dssp EEECCTTSCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCCchhcCCccCCCCCEeECCC-cccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence 99998884 44445554 355666655 5689999999999987 5667889999999999999875
No 58
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.86 E-value=2.8e-21 Score=191.55 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=136.7
Q ss_pred CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 91 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 91 g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+.++.||+||+|||+ .|..|++||. ..++|+.++..... +|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus 137 ~~~~~~d~lViAtGs--~p~~p~i~G~--~~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 210 (500)
T 1onf_A 137 EEILEGRNILIAVGN--KPVFPPVKGI--ENTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 210 (500)
T ss_dssp ----CBSSEEECCCC--CBCCCSCTTG--GGCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred ceEEEeCEEEECCCC--CCCCCCCCCC--CcccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 556899999999998 8999999983 13567766665544 89999999999999999999999999999999764
Q ss_pred eeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--
Q psy2343 171 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-- 248 (396)
Q Consensus 171 ~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-- 248 (396)
. +|.. . . .+... +.+.+.+..|++
T Consensus 211 ~-l~~~----d---------~---------~~~~~-------------------------------l~~~l~~~gv~i~~ 236 (500)
T 1onf_A 211 I-LRKF----D---------E---------SVINV-------------------------------LENDMKKNNINIVT 236 (500)
T ss_dssp S-CTTS----C---------H---------HHHHH-------------------------------HHHHHHHTTCEEEC
T ss_pred c-Cccc----c---------h---------hhHHH-------------------------------HHHHHHhCCCEEEE
Confidence 2 1211 0 0 11111 111122223443
Q ss_pred cCCcceEeCC-----eEEecCCcE-ecCcEEEEccCCCCCCCC--CCcccccccCCccccccccccCCCCcEEEEeccc-
Q psy2343 249 KDDIKNLNGN-----IVHFVDDTH-IEVDTIIYATGYNRHFPF--IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVN- 319 (396)
Q Consensus 249 ~~~i~~i~~~-----~v~~~dG~~-~~~D~VI~aTG~~~~~~~--l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~- 319 (396)
...|+++++. .|.++||+. +++|.||+|+|++|+.++ ++...++.+.+.+.+... +.++.|+||++||+.
T Consensus 237 ~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~-~~t~~~~iya~GD~~~ 315 (500)
T 1onf_A 237 FADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN-QRTSVNNIYAVGDCCM 315 (500)
T ss_dssp SCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT-CBCSSSSEEECSTTEE
T ss_pred CCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC-cccCCCCEEEEecccc
Confidence 3457777532 477889988 999999999999999864 455556555555666655 468999999999997
Q ss_pred ---------------------------------CcCchhhHHHHHHHHHHHHHhcc
Q psy2343 320 ---------------------------------AAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 320 ---------------------------------~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.....++.|..||+.+|.++.+.
T Consensus 316 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~ 371 (500)
T 1onf_A 316 VKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLK 371 (500)
T ss_dssp EC------------------------------CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCC
Confidence 22356788999999999999874
No 59
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=99.86 E-value=2.8e-21 Score=190.79 Aligned_cols=223 Identities=14% Similarity=0.088 Sum_probs=157.0
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC------------cEEEcCEEEEcccCCCCCCCCC-CCCCcccc
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG------------KKKKYDFIAVCNGAQRVARYPN-YSGYFSGE 121 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g------------~~~~~d~vvvAtG~~~~p~~P~-~~g~~~g~ 121 (396)
+...+++.++. +++++.+. .+.+.+.|++.+| .++.||+||+|||+ .|..|+ ++. ...
T Consensus 101 ~~~~~~~~gv~--~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs--~p~~~~~i~~--~~~ 171 (482)
T 1ojt_A 101 LAGMAKSRKVD--VIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS--RVTKLPFIPE--DPR 171 (482)
T ss_dssp HHHHHHHTTCE--EEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE--EECCCSSCCC--CTT
T ss_pred HHHHHHhCCcE--EEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC--CCCCCCCCCc--cCc
Confidence 45566677775 66666543 2356777776555 56899999999999 677776 553 224
Q ss_pred eeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 201 (396)
Q Consensus 122 ~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 201 (396)
++++.+...... .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.. + . .
T Consensus 172 v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~-l~~~----~---------~---------~ 227 (482)
T 1ojt_A 172 IIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL-MQGA----D---------R---------D 227 (482)
T ss_dssp EECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS-STTS----C---------H---------H
T ss_pred EEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc-cccc----C---------H---------H
Confidence 667666554433 4799999999999999999999999999999998632 1110 0 0 1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEEecC----CcEecCc
Q psy2343 202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFVD----DTHIEVD 271 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~d----G~~~~~D 271 (396)
+.+ .+.+.+.+..|++. ..|++++++ .|.+.| |+++++|
T Consensus 228 ~~~-------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D 276 (482)
T 1ojt_A 228 LVK-------------------------------VWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYD 276 (482)
T ss_dssp HHH-------------------------------HHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEES
T ss_pred HHH-------------------------------HHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcC
Confidence 111 11222222345543 356666532 467777 7788999
Q ss_pred EEEEccCCCCCCCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 272 TIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.||+|||++|+.++| +...++.++ +.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus 277 ~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 349 (482)
T 1ojt_A 277 AVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQ-MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH 349 (482)
T ss_dssp CEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTT-SBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCC-cccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence 999999999998874 555565544 55666654 57899999999999876667889999999999999875
No 60
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=99.85 E-value=4.3e-21 Score=189.86 Aligned_cols=270 Identities=14% Similarity=0.104 Sum_probs=173.5
Q ss_pred CCCccccccCCCCCCCCCCceeeecCCC----ccccCCCCCCCCCCC-CCChHHHHHHHHHHHH-----------Hc-CC
Q psy2343 2 ESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPV-YPNHSMMLDYLRSYAK-----------KF-DV 64 (396)
Q Consensus 2 ~~~iGG~W~~~~~~~~~y~~~~~~~~~~----~~~~~~~p~p~~~~~-~p~~~~~~~Yl~~~~~-----------~~-~l 64 (396)
++.+||+|.+. .|+|+..+..+.. +..++.|.++...+. .....++.++.+.+++ +. ++
T Consensus 48 ~~~~GG~~~~~----gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv 123 (495)
T 2wpf_A 48 YAALGGTCVNV----GCVPKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL 123 (495)
T ss_dssp BCBTTHHHHHH----SHHHHHHHHHHHHHHHHHHHHHTTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred CCCCCCeeecC----CcchHHHHHHHHHHHHHHhHHHhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 56789999764 2444432221111 112233333221110 2345566666555543 33 54
Q ss_pred CCceEeCcEEEEEEEeCCeEEEEEc---c-----CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCC
Q psy2343 65 YNHSIFNTEVINLEQYEDIWEVELS---N-----GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRN 136 (396)
Q Consensus 65 ~~~i~~~t~V~~v~~~~~~~~V~~~---~-----g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~ 136 (396)
. ++.+ +++.++ . ++|+++ + ++++.||+||||||+ .|..|+++|. ..++++.++..... .+
T Consensus 124 ~--~~~g-~~~~i~--~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs--~p~~p~i~G~--~~~~~~~~~~~~~~-~~ 191 (495)
T 2wpf_A 124 D--FFLG-WGSLES--K--NVVVVRETADPKSAVKERLQADHILLATGS--WPQMPAIPGI--EHCISSNEAFYLPE-PP 191 (495)
T ss_dssp E--EEES-EEEEEE--T--TEEEEESSSSTTSCEEEEEEEEEEEECCCE--EECCCCCTTG--GGCEEHHHHTTCSS-CC
T ss_pred E--EEEe-EEEEee--C--CEEEEeecCCccCCCCeEEEcCEEEEeCCC--CcCCCCCCCc--cccccHHHHHhhhh-cC
Confidence 3 4444 355543 2 356654 3 567899999999998 8999999983 12566665554433 47
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
++|+|||+|.+|+|+|..+++. +.+|+++.|.+.. +|.. .. .+...
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~-l~~~----d~------------------~~~~~-------- 240 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI-LRGF----DE------------------TIREE-------- 240 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS-CTTS----CH------------------HHHHH--------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc-cccc----CH------------------HHHHH--------
Confidence 8999999999999999999998 9999999997632 1210 00 11111
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCC-----eEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
+.+.+.+..|+ ....|++++.. .|.+.||+.+++|.||+|||++|+.++|
T Consensus 241 -----------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L 297 (495)
T 2wpf_A 241 -----------------------VTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDL 297 (495)
T ss_dssp -----------------------HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGG
T ss_pred -----------------------HHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccccc
Confidence 11111112333 34567777532 4778899999999999999999998754
Q ss_pred --Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 287 --DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 287 --~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+...+..+ ++.+.+.+. +.++.|+||++||+......++.|..||+.+|..+.|.
T Consensus 298 ~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 298 QLGNVGVKLTPKGGVQVDEF-SRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp TGGGTTCCBCTTSSBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred chhhcCccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 44455554 455666654 46889999999999865567889999999999999874
No 61
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=99.85 E-value=4.1e-22 Score=194.61 Aligned_cols=242 Identities=19% Similarity=0.165 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~ 126 (396)
.+++.++..++++++++. +++++.|. ..|+++++. ..||+||+|||.. .|+.|.+|| ...| ++++.
T Consensus 171 ~~~~~~~~~~~l~~~gv~--~~~~~~v~--------~~v~~~~~~-~~~d~vvlAtG~~-~~~~~~ipG~~~~g-v~~a~ 237 (456)
T 2vdc_G 171 EKSVVERRVKLLADAGVI--YHPNFEVG--------RDASLPELR-RKHVAVLVATGVY-KARDIKAPGSGLGN-IVAAL 237 (456)
T ss_dssp CHHHHHHHHHHHHHTTCE--EETTCCBT--------TTBCHHHHH-SSCSEEEECCCCC-EECCTTCSCCTTTT-EEEHH
T ss_pred CHHHHHHHHHHHHHCCcE--EEeCCEec--------cEEEhhHhH-hhCCEEEEecCCC-CCCCCCCCCCcCCC-cEEHH
Confidence 357888888889999986 88887652 123333333 5699999999983 477788888 5444 33322
Q ss_pred cC---------CC--------CCCCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCceeecCCCCCCChhHHHHh
Q psy2343 127 DY---------KS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQ 188 (396)
Q Consensus 127 ~~---------~~--------~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~~~~p~~~~~~~~~~~~~~ 188 (396)
+| .. .....+|+|+|||+|++|+|+|..+.+.+. +|+++.|++...+|.. +
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~----~------- 306 (456)
T 2vdc_G 238 DYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGS----Q------- 306 (456)
T ss_dssp HHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSC----H-------
T ss_pred HHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCC----H-------
Confidence 11 11 123679999999999999999999988754 6999999875433321 0
Q ss_pred hCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE---ecC-CcceEe--CC-eEE
Q psy2343 189 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL---PKD-DIKNLN--GN-IVH 261 (396)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~---~~~-~i~~i~--~~-~v~ 261 (396)
.-...+. . .|+. ...+....+...+|++. +.. .....+ +. ...
T Consensus 307 ------------~e~~~~~-~-------~Gv~----------~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~ 356 (456)
T 2vdc_G 307 ------------REVAHAE-E-------EGVE----------FIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQ 356 (456)
T ss_dssp ------------HHHHHHH-H-------TTCE----------EECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEE
T ss_pred ------------HHHHHHH-H-------CCCE----------EEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCcccc
Confidence 0001100 0 0000 00000000011111111 000 000000 00 011
Q ss_pred ecCC--cEecCcEEEEccCCCCCCC--CCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343 262 FVDD--THIEVDTIIYATGYNRHFP--FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 336 (396)
Q Consensus 262 ~~dG--~~~~~D~VI~aTG~~~~~~--~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a 336 (396)
..+| ..+++|.||+|+|++++.. +++...+..+ .+.+.+....+.++.|+||++||+.....++..|..||+.+|
T Consensus 357 ~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA 436 (456)
T 2vdc_G 357 VIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAA 436 (456)
T ss_dssp EEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHH
Confidence 1234 3589999999999998754 6665555553 356666666567999999999999876677888999999999
Q ss_pred HHHhccc
Q psy2343 337 SYIQAFI 343 (396)
Q Consensus 337 ~~l~~~~ 343 (396)
..|.+.+
T Consensus 437 ~~i~~~L 443 (456)
T 2vdc_G 437 EGIHAYA 443 (456)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8776554
No 62
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=99.85 E-value=3.1e-20 Score=182.00 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=154.3
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQI 134 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~ 134 (396)
+..++++.++. ++.++.+ .+ +.+.+.|.+ +|.++.||+||+|||+ .|..|+++|.....++++.++.....
T Consensus 95 ~~~~~~~~~v~--~~~g~~~-~i--~~~~~~v~~-~g~~~~~d~lviAtG~--~p~~~~~~g~~~~~v~~~~~~~~~~~- 165 (455)
T 2yqu_A 95 VEFLFKKNGIA--RHQGTAR-FL--SERKVLVEE-TGEELEARYILIATGS--APLIPPWAQVDYERVVTSTEALSFPE- 165 (455)
T ss_dssp HHHHHHHHTCE--EEESCEE-ES--SSSEEEETT-TCCEEEEEEEEECCCE--EECCCTTBCCCSSSEECHHHHTCCSS-
T ss_pred HHHHHHhCCCE--EEEeEEE-Ee--cCCeEEEee-CCEEEEecEEEECCCC--CCCCCCCCCCCcCcEechHHhhcccc-
Confidence 34556666765 6666543 22 245566655 6677999999999999 88888888722224677766654433
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
.+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|.. +. .+.+.+
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~-l~~~----~~------------------~~~~~l-------- 214 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI-LPTM----DL------------------EVSRAA-------- 214 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS----CH------------------HHHHHH--------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc-cccc----CH------------------HHHHHH--------
Confidence 4689999999999999999999999999999987642 2210 00 111111
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--Ce--EEecCCcEecCcEEEEccCCCCCCCCC--
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NI--VHFVDDTHIEVDTIIYATGYNRHFPFI-- 286 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~l-- 286 (396)
.+.+.+..|++ ...|++++. +. +.++||+.+++|.||+|||++++.+++
T Consensus 215 -----------------------~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~ 271 (455)
T 2yqu_A 215 -----------------------ERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSL 271 (455)
T ss_dssp -----------------------HHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCG
T ss_pred -----------------------HHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCCh
Confidence 11111112333 345666653 33 455688889999999999999998874
Q ss_pred Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 287 DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 287 ~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+...+..+ .+.+.+... +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus 272 ~~~g~~~~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 272 ENAGLSTDERGRIPVDEH-LRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp GGGTCCCCTTSCCCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCccCCCCcEeECCC-cccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 44445543 345666655 46889999999999876667788999999999999875
No 63
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=99.84 E-value=1e-21 Score=193.97 Aligned_cols=233 Identities=17% Similarity=0.128 Sum_probs=156.5
Q ss_pred CCChHHHHHHHHHHHHHc-----------CCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKF-----------DVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~-----------~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P 112 (396)
.+...++.+|.+.+++++ ++. .+..++..+ +.+.+.|.+.+|. ++.||+||||||+ .|..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~--~~~~v~v~~~~g~~~~~~d~lviATGs--~p~~p 165 (483)
T 3dgh_A 93 KPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE---YINGLGSFV--DSHTLLAKLKSGERTITAQTFVIAVGG--RPRYP 165 (483)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEE--ETTEEEEECTTCCEEEEEEEEEECCCE--EECCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEeEEEEc--cCCEEEEEeCCCeEEEEcCEEEEeCCC--CcCCC
Confidence 445667777776665543 222 122233322 2566778777764 6899999999998 89999
Q ss_pred CCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCc
Q psy2343 113 NYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 191 (396)
Q Consensus 113 ~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~ 191 (396)
++|| .. ..+++.++.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.. .+|.. +.
T Consensus 166 ~i~G~~~--~~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~l~~~----d~--------- 227 (483)
T 3dgh_A 166 DIPGAVE--YGITSDDLFSLD-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI--VLRGF----DQ--------- 227 (483)
T ss_dssp SSTTHHH--HCBCHHHHTTCS-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC--SSTTS----CH---------
T ss_pred CCCCccc--ccCcHHHHhhhh-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC--CCccc----CH---------
Confidence 9998 21 134554444332 346899999999999999999999999999998853 12211 10
Q ss_pred cccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--C---eEEecC
Q psy2343 192 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--N---IVHFVD 264 (396)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~---~v~~~d 264 (396)
.+.+. +.+.+.+..|+ ....+.+++. + .|.+.+
T Consensus 228 ---------~~~~~-------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~ 267 (483)
T 3dgh_A 228 ---------QMAEL-------------------------------VAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKN 267 (483)
T ss_dssp ---------HHHHH-------------------------------HHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEE
T ss_pred ---------HHHHH-------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEec
Confidence 11111 11111111233 3334666642 2 267776
Q ss_pred Cc-----EecCcEEEEccCCCCCCCCC--CcccccccCCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHH
Q psy2343 265 DT-----HIEVDTIIYATGYNRHFPFI--DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIR 336 (396)
Q Consensus 265 G~-----~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a 336 (396)
|. .+++|.||+|||++|+..++ +...+..+++.+.+... +.++.|+||++||+.. .....+.|..||+.+|
T Consensus 268 ~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa 346 (483)
T 3dgh_A 268 VETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ-EATNVANIYAVGDIIYGKPELTPVAVLAGRLLA 346 (483)
T ss_dssp TTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTT-CBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHH
T ss_pred CCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcC-CccCCCCEEEEEcccCCCCccHHHHHHHHHHHH
Confidence 64 68999999999999998876 44456655566766655 4789999999999963 3456788999999999
Q ss_pred HHHhccc
Q psy2343 337 SYIQAFI 343 (396)
Q Consensus 337 ~~l~~~~ 343 (396)
..+.|..
T Consensus 347 ~~i~g~~ 353 (483)
T 3dgh_A 347 RRLYGGS 353 (483)
T ss_dssp HHHHSCC
T ss_pred HHHcCCC
Confidence 9998763
No 64
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=99.84 E-value=4.6e-21 Score=188.17 Aligned_cols=216 Identities=15% Similarity=0.154 Sum_probs=148.5
Q ss_pred HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCe
Q psy2343 59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKR 138 (396)
Q Consensus 59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~ 138 (396)
+++.++. ++.+ ++..++ . +.|++ +++++.||+||+|||+ .|..|++||. ..++++.++..... .+++
T Consensus 102 ~~~~gv~--~~~g-~~~~i~--~--~~v~~-~g~~~~~d~lviAtGs--~p~~p~i~G~--~~~~~~~~~~~~~~-~~~~ 168 (463)
T 2r9z_A 102 VERLGIT--RVDG-HARFVD--A--HTIEV-EGQRLSADHIVIATGG--RPIVPRLPGA--ELGITSDGFFALQQ-QPKR 168 (463)
T ss_dssp HHHTTCE--EEES-CEEEEE--T--TEEEE-TTEEEEEEEEEECCCE--EECCCSCTTG--GGSBCHHHHHHCSS-CCSE
T ss_pred HHHCCCE--EEEe-EEEEcc--C--CEEEE-CCEEEEcCEEEECCCC--CCCCCCCCCc--cceecHHHHhhhhc-cCCE
Confidence 3445654 4444 344443 2 35666 6677899999999998 8999999883 12445444433222 3689
Q ss_pred EEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCC
Q psy2343 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYG 218 (396)
Q Consensus 139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (396)
|+|||+|.+|+|+|..|++.+.+|+++.|++... |. .+. .+...
T Consensus 169 vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-~~----~~~------------------~~~~~------------- 212 (463)
T 2r9z_A 169 VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQ----FDP------------------LLSAT------------- 212 (463)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TT----SCH------------------HHHHH-------------
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-cc----cCH------------------HHHHH-------------
Confidence 9999999999999999999999999999876321 11 000 11111
Q ss_pred CCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC----CeEEecCCc-EecCcEEEEccCCCCCCCCC--Ccc
Q psy2343 219 LKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG----NIVHFVDDT-HIEVDTIIYATGYNRHFPFI--DKE 289 (396)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~----~~v~~~dG~-~~~~D~VI~aTG~~~~~~~l--~~~ 289 (396)
+.+.+.+..|++ ...|++++. ..|.+.||+ ++++|.||+|||++|+.++| +..
T Consensus 213 ------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~ 274 (463)
T 2r9z_A 213 ------------------LAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAA 274 (463)
T ss_dssp ------------------HHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHH
T ss_pred ------------------HHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhc
Confidence 111122223443 345677753 257788999 89999999999999998765 333
Q ss_pred ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 290 KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 290 ~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.+..+ ++.+.+... +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus 275 g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 327 (463)
T 2r9z_A 275 GIEVQSNGMVPTDAY-QNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDG 327 (463)
T ss_dssp TCCCCTTSCCCCCTT-SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCCEeECCC-CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 45544 455666655 47899999999999765567889999999999999875
No 65
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=99.84 E-value=1.3e-21 Score=193.38 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=157.3
Q ss_pred CChHHHHHHHHHHHHHcCCC--CceEe--CcEEEE--EEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcc
Q psy2343 46 PNHSMMLDYLRSYAKKFDVY--NHSIF--NTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFS 119 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~--~~i~~--~t~V~~--v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~ 119 (396)
....++.+|++++++++... ..+.. +..+.. ... .+.++|+++++.++.||+||||||+ .|..|++++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~-~~~~~v~~~~~~~~~~d~lViATGs--~p~~p~~~~~~~ 158 (492)
T 3ic9_A 82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKF-LDEHTLQVDDHSQVIAKRIVIATGS--RPNYPEFLAAAG 158 (492)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEE-EETTEEEETTTEEEEEEEEEECCCE--ECCCCHHHHTTG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEE-ecCCEEEEcCCcEEEeCEEEEccCC--CCcCCCCCCccC
Confidence 45677888877776654311 00000 000100 000 2235777877888999999999998 898887666333
Q ss_pred cceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 199 (396)
Q Consensus 120 g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (396)
..++++.++... ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.. . .
T Consensus 159 ~~v~t~~~~~~~-~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~----d---------~-------- 215 (492)
T 3ic9_A 159 SRLLTNDNLFEL-NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV-ANLQ----D---------E-------- 215 (492)
T ss_dssp GGEECHHHHTTC-SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC-TTCC----C---------H--------
T ss_pred CcEEcHHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc-cccC----C---------H--------
Confidence 456666555443 334899999999999999999999999999999998642 1110 0 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--Ce--EEec--CC--cEec
Q psy2343 200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NI--VHFV--DD--THIE 269 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~--v~~~--dG--~~~~ 269 (396)
.+.+ .+.+.+... |++ ...|++++. +. +.+. || ..++
T Consensus 216 -~~~~-------------------------------~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~ 262 (492)
T 3ic9_A 216 -EMKR-------------------------------YAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTES 262 (492)
T ss_dssp -HHHH-------------------------------HHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEE
T ss_pred -HHHH-------------------------------HHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEE
Confidence 1111 111222222 443 334666643 22 4554 77 5689
Q ss_pred CcEEEEccCCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343 270 VDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 341 (396)
Q Consensus 270 ~D~VI~aTG~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~ 341 (396)
+|.||+|||++|+.++ ++...+..++ +.+.+....+.++.|+||++||+.......+.|..||+.+|..+.+
T Consensus 263 ~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 263 FQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp ESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 9999999999999988 4444555543 4455542556789999999999987667788999999999999987
No 66
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=99.84 E-value=2.8e-20 Score=182.02 Aligned_cols=216 Identities=18% Similarity=0.113 Sum_probs=147.6
Q ss_pred HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCe
Q psy2343 59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKR 138 (396)
Q Consensus 59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~ 138 (396)
.++.++. +..+ +++.++ .. +|.+ +++++.||+||+|||+ .|..|++||.. .++++.++.... -.+|+
T Consensus 103 ~~~~~v~--~~~g-~~~~i~--~~--~v~~-~g~~~~~d~lviAtGs--~p~~p~i~g~~--~~~~~~~~~~~~-~~~~~ 169 (450)
T 1ges_A 103 LGKNNVD--VIKG-FARFVD--AK--TLEV-NGETITADHILIATGG--RPSHPDIPGVE--YGIDSDGFFALP-ALPER 169 (450)
T ss_dssp HHHTTCE--EEES-CCEEEE--TT--EEEE-TTEEEEEEEEEECCCE--EECCCCSTTGG--GSBCHHHHHHCS-SCCSE
T ss_pred HHhCCCE--EEEe-EEEEec--CC--EEEE-CCEEEEeCEEEECCCC--CCCCCCCCCcc--ceecHHHhhhhh-hcCCe
Confidence 3455654 4444 334443 22 5555 6677999999999998 89999998831 234444433322 23789
Q ss_pred EEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCC
Q psy2343 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYG 218 (396)
Q Consensus 139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (396)
|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|. .+ . .+.+.+
T Consensus 170 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~~~~l------------ 214 (450)
T 1ges_A 170 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP-LPS----FD---------P---------MISETL------------ 214 (450)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STT----SC---------H---------HHHHHH------------
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch-hhh----hh---------H---------HHHHHH------------
Confidence 999999999999999999999999999987632 111 00 0 111111
Q ss_pred CCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEecCCcEecCcEEEEccCCCCCCCCC--Ccc
Q psy2343 219 LKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGYNRHFPFI--DKE 289 (396)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~ 289 (396)
.+.+.+..|++ ...|++++.+ .|.+.||+.+++|.||+|+|++|+.++| +..
T Consensus 215 -------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~ 275 (450)
T 1ges_A 215 -------------------VEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAA 275 (450)
T ss_dssp -------------------HHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHH
T ss_pred -------------------HHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhc
Confidence 11111112333 3456666531 5778899999999999999999998855 333
Q ss_pred ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 290 KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 290 ~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
.+..+ ++.+.+...+ .++.|+||++||+......++.|..||+.+|.++.+.
T Consensus 276 gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T 1ges_A 276 GVKTNEKGYIVVDKYQ-NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN 328 (450)
T ss_dssp TCCBCTTSCBCCCTTS-BCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CceECCCCCEeECCCC-ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 45554 4556666554 6899999999999765567889999999999999874
No 67
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=99.84 E-value=1.7e-20 Score=185.44 Aligned_cols=221 Identities=17% Similarity=0.088 Sum_probs=151.8
Q ss_pred HHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEE---ccC---cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCC
Q psy2343 57 SYAKKF-DVYNHSIFNTEVINLEQYEDIWEVEL---SNG---KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 129 (396)
Q Consensus 57 ~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~---~~g---~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~ 129 (396)
...++. ++. ++.+ +++.++ .+.+.+.. .+| .++.||+||||||+ .|..|++||. ..++++.++.
T Consensus 111 ~~l~~~~gv~--~~~g-~~~~i~--~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs--~p~~p~i~g~--~~~~~~~~~~ 181 (490)
T 1fec_A 111 GMFADTEGLT--FHQG-FGALQD--NHTVLVRESADPNSAVLETLDTEYILLATGS--WPQHLGIEGD--DLCITSNEAF 181 (490)
T ss_dssp HHHHTSTTEE--EEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEECCCE--EECCCCSBTG--GGCBCHHHHT
T ss_pred HHHhcCCCcE--EEEe-EEEEee--CCEEEEEeeccCCCCceEEEEcCEEEEeCCC--CCCCCCCCCc--cceecHHHHh
Confidence 333444 554 4445 355554 34455543 256 56899999999998 8999988883 1244554444
Q ss_pred CCCCCCCCeEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHH
Q psy2343 130 SPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 206 (396)
Q Consensus 130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (396)
... ..+++|+|||+|.+|+|+|..+.+. +.+|+++.|.+.. +|. .+ . .+.+.
T Consensus 182 ~~~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~-l~~----~d---------~---------~~~~~- 236 (490)
T 1fec_A 182 YLD-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI-LRG----FD---------S---------ELRKQ- 236 (490)
T ss_dssp TCS-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS-STT----SC---------H---------HHHHH-
T ss_pred hhh-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc-ccc----cC---------H---------HHHHH-
Confidence 332 2478999999999999999999998 9999999998632 121 00 0 11111
Q ss_pred HHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEecCCcEecCcEEEEccCC
Q psy2343 207 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGY 279 (396)
Q Consensus 207 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~ 279 (396)
+.+.+....|++ ...|++++.. .|.+.||+.+++|.||+|+|+
T Consensus 237 ------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 237 ------------------------------LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp ------------------------------HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred ------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 111122223443 4567777532 477889988999999999999
Q ss_pred CCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 280 NRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 280 ~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+|+..+| +..++..+ .+.+.+.+. +.++.|+||++||+......++.|..||+.+|..+.|.
T Consensus 287 ~p~~~~L~l~~~gl~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 287 VPRSQTLQLEKAGVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp EESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CcCccccCchhcCccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 9998754 44455554 455666655 56899999999999865567889999999999999874
No 68
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=99.84 E-value=6.7e-21 Score=187.09 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=152.1
Q ss_pred HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC-CCCCcccceeecccCCCCCCC
Q psy2343 56 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQI 134 (396)
Q Consensus 56 ~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~-~~g~~~g~~~hs~~~~~~~~~ 134 (396)
...+++.++. ++.++.+. ++ .+ +|++. |+++.||+||+|||+ .|..|+ +++ .+.++++.++......
T Consensus 100 ~~~~~~~gv~--~~~g~~~~-~~--~~--~v~v~-g~~~~~d~lViATGs--~p~~p~gi~~--~~~v~~~~~~~~l~~~ 167 (464)
T 2eq6_A 100 GTLLKGNGVE--LLRGFARL-VG--PK--EVEVG-GERYGAKSLILATGS--EPLELKGFPF--GEDVWDSTRALKVEEG 167 (464)
T ss_dssp HHHHHHTTCE--EEESCEEE-EE--TT--EEEET-TEEEEEEEEEECCCE--EECCBTTBCC--SSSEECHHHHTCGGGC
T ss_pred HHHHHhCCCE--EEeeeEEE-cc--CC--EEEEc-cEEEEeCEEEEcCCC--CCCCCCCCCC--CCcEEcHHHHHhhhhh
Confidence 4455666776 66665442 33 33 45554 667899999999998 788875 666 2246777766655444
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|.. + . .+.+.
T Consensus 168 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~---------~---------~~~~~--------- 215 (464)
T 2eq6_A 168 LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI-LPQG----D---------P---------ETAAL--------- 215 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS----C---------H---------HHHHH---------
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc-cccc----C---------H---------HHHHH---------
Confidence 5799999999999999999999999999999987631 1210 0 0 11111
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC--C--eEEec-C--Cc--EecCcEEEEccCCCCCC
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG--N--IVHFV-D--DT--HIEVDTIIYATGYNRHF 283 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~--~--~v~~~-d--G~--~~~~D~VI~aTG~~~~~ 283 (396)
+.+.+.+..|++. ..|++++. + .|.+. + |+ ++++|.||+|||++|+.
T Consensus 216 ----------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~ 273 (464)
T 2eq6_A 216 ----------------------LRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT 273 (464)
T ss_dssp ----------------------HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred ----------------------HHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence 1111112234432 34666643 2 25665 6 87 79999999999999998
Q ss_pred CCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 284 PFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 284 ~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+++ +...+..+ ++.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus 274 ~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 334 (464)
T 2eq6_A 274 EGLGLEKAGVKVDERGFIRVNAR-METSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGK 334 (464)
T ss_dssp TTSSHHHHTCCBCTTSCBCCCTT-CBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhhcCceecCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 875 33345543 355666655 56899999999999876667888999999999999875
No 69
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.84 E-value=6e-20 Score=180.03 Aligned_cols=220 Identities=14% Similarity=0.195 Sum_probs=150.9
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC-CCCCcccceeecccCCCCCC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQ 133 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~-~~g~~~g~~~hs~~~~~~~~ 133 (396)
++.++++.++. ++.++.+. ++ . ++|++++ .++.||+||||||+ .|..|+ ++ +.+.++++.++.....
T Consensus 102 ~~~~~~~~gv~--~~~g~~~~-~~--~--~~v~v~~-~~~~~d~lviATGs--~p~~~~~~~--~~~~v~~~~~~~~~~~ 169 (458)
T 1lvl_A 102 VAALLKKHGVK--VVHGWAKV-LD--G--KQVEVDG-QRIQCEHLLLATGS--SSVELPMLP--LGGPVISSTEALAPKA 169 (458)
T ss_dssp HHHHHHHTTCE--EECSCEEE-EE--T--TEEEETT-EEEECSEEEECCCE--EECCBTTBC--CBTTEECHHHHTCCSS
T ss_pred HHHHHHhCCcE--EEEEEEEE-cc--C--CEEEEee-EEEEeCEEEEeCCC--CCCCCCCCC--ccCcEecHHHHhhhhc
Confidence 34556677776 66666543 32 2 3566655 66899999999999 787765 55 2335777776655433
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
.+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +|. .+ . .+.+.
T Consensus 170 -~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~~~~-------- 217 (458)
T 1lvl_A 170 -LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI-LPT----YD---------S---------ELTAP-------- 217 (458)
T ss_dssp -CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS-STT----SC---------H---------HHHHH--------
T ss_pred -cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc-ccc----cC---------H---------HHHHH--------
Confidence 5799999999999999999999999999999998642 121 00 0 11111
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEec--CC--cEecCcEEEEccCCCCCCCCC-
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFV--DD--THIEVDTIIYATGYNRHFPFI- 286 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~--dG--~~~~~D~VI~aTG~~~~~~~l- 286 (396)
+.+.+.+..|++ ...|++++.+.+.+. +| +.+++|.||+|||++|+.+++
T Consensus 218 -----------------------l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~ 274 (458)
T 1lvl_A 218 -----------------------VAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFN 274 (458)
T ss_dssp -----------------------HHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSS
T ss_pred -----------------------HHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCC
Confidence 111111113333 335666665335444 67 579999999999999998874
Q ss_pred -CcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 287 -DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 287 -~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+...+..+++.+.+... +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus 275 ~~~~g~~~~~~~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 275 LECLDLKMNGAAIAIDER-CQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp GGGSCCCEETTEECCCTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred cHhcCCcccCCEEeECCC-CcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 44445544335666555 56889999999999876667889999999999999874
No 70
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=99.84 E-value=7.3e-21 Score=189.29 Aligned_cols=271 Identities=15% Similarity=0.092 Sum_probs=167.6
Q ss_pred CccccccCCCCCCCCCCceeeecCCC----ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHc-----------CCCCce
Q psy2343 4 DLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF-----------DVYNHS 68 (396)
Q Consensus 4 ~iGG~W~~~~~~~~~y~~~~~~~~~~----~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~-----------~l~~~i 68 (396)
.+||+|.+. .|+|+..+..+.. ...+.+|.++...+..+..+.+.+|.+.+.+++ ++. +
T Consensus 74 ~~GGtc~~~----GciPsk~l~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~--~ 147 (519)
T 3qfa_A 74 GLGGTCVNV----GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV--Y 147 (519)
T ss_dssp CTTCHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTTBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E
T ss_pred CcccccCCc----CccchHHHHHHHHHHHHHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E
Confidence 689999765 2455433222211 112223333322223455667777776655432 332 2
Q ss_pred EeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCC
Q psy2343 69 IFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGN 146 (396)
Q Consensus 69 ~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~ 146 (396)
+..++..++ .+.+.|.+.+|+ ++.||+||||||+ .|..|++||.- ..++++.++.... ...++|+|||+|.
T Consensus 148 -i~g~a~~~d--~~~v~v~~~~g~~~~i~~d~lViATGs--~p~~p~i~G~~-~~~~t~~~~~~l~-~~~~~vvVIGgG~ 220 (519)
T 3qfa_A 148 -ENAYGQFIG--PHRIKATNNKGKEKIYSAERFLIATGE--RPRYLGIPGDK-EYCISSDDLFSLP-YCPGKTLVVGASY 220 (519)
T ss_dssp -ECSEEEEEE--TTEEEEECTTCCCCEEEEEEEEECCCE--EECCCCCTTHH-HHCBCHHHHTTCS-SCCCSEEEECCSH
T ss_pred -EEEEEEEee--CCEEEEEcCCCCEEEEECCEEEEECCC--CcCCCCCCCcc-CceEcHHHHhhhh-hcCCeEEEECCcH
Confidence 233343333 456777766664 6899999999998 89999999811 1244555544433 3456799999999
Q ss_pred cHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy2343 147 SGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPL 226 (396)
Q Consensus 147 sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 226 (396)
+|+|+|..+++.+.+|+++.|+. ++|.. +. .+.+.
T Consensus 221 ig~E~A~~l~~~G~~Vtlv~~~~--~l~~~----d~------------------~~~~~--------------------- 255 (519)
T 3qfa_A 221 VALECAGFLAGIGLDVTVMVRSI--LLRGF----DQ------------------DMANK--------------------- 255 (519)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSC--SSTTS----CH------------------HHHHH---------------------
T ss_pred HHHHHHHHHHHcCCeEEEEeccc--ccccC----CH------------------HHHHH---------------------
Confidence 99999999999999999999852 22211 00 11111
Q ss_pred CcccCccCchhhhcccCCCeEecC-----CcceEeC---CeE--E--ecCCc---EecCcEEEEccCCCCCCCC--CCcc
Q psy2343 227 DAAHPIMNSQILYHIGHGDILPKD-----DIKNLNG---NIV--H--FVDDT---HIEVDTIIYATGYNRHFPF--IDKE 289 (396)
Q Consensus 227 ~~~~~~~~~~~~~~i~~g~i~~~~-----~i~~i~~---~~v--~--~~dG~---~~~~D~VI~aTG~~~~~~~--l~~~ 289 (396)
+.+.+.+..|++.. .|..++. +.+ . ..+|. .+++|.||+|||++|+..+ ++..
T Consensus 256 ----------~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~ 325 (519)
T 3qfa_A 256 ----------IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETV 325 (519)
T ss_dssp ----------HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTT
T ss_pred ----------HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhc
Confidence 11111122333321 2333332 222 2 24563 4689999999999999887 4455
Q ss_pred ccccc--CCccccccccccCCCCcEEEEeccc-CcCchhhHHHHHHHHHHHHHhccc
Q psy2343 290 KLEWK--LGIPDLFIHIAPRNLDNIFFFGFVN-AAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 290 ~~~~~--~~~~~l~~~~~~~~~p~l~~iG~~~-~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.++.+ ++.+.+.+. +.++.|+||++||+. ......+.|..||+.+|.++.|..
T Consensus 326 gl~~~~~~G~I~Vd~~-~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~ 381 (519)
T 3qfa_A 326 GVKINEKTGKIPVTDE-EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS 381 (519)
T ss_dssp TCCCCTTTCCBCCCTT-SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcEEcCCCCeEeeCCC-CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 56654 355666655 468999999999997 335677889999999999998753
No 71
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=99.84 E-value=1.5e-21 Score=193.04 Aligned_cols=272 Identities=17% Similarity=0.115 Sum_probs=169.1
Q ss_pred CCCccccccCCCCCCCCCCceeeecCCC----ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHc-----------CCCC
Q psy2343 2 ESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF-----------DVYN 66 (396)
Q Consensus 2 ~~~iGG~W~~~~~~~~~y~~~~~~~~~~----~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~-----------~l~~ 66 (396)
+..+||+|.+. .|+|+..+..+.. ...+..|.++...+..+...++.++.+.+.+++ ++.
T Consensus 46 ~~~~GGtc~~~----gciPsk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~- 120 (488)
T 3dgz_A 46 KWGLGGTCVNV----GCIPKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK- 120 (488)
T ss_dssp CCCTTCHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-
T ss_pred cCCcCCeeccc----CCcccHHHHHHHHHHHHHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE-
Confidence 34699999765 2555443322211 111223333322233456667777766655433 222
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCC-CCC-CcccceeecccCCCCCCCCCCeEEEE
Q psy2343 67 HSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN-YSG-YFSGEILHSMDYKSPDQIRNKRVLVV 142 (396)
Q Consensus 67 ~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~-~~g-~~~g~~~hs~~~~~~~~~~~k~VvVV 142 (396)
.+..++..++ .+.+.|.+.+| .++.||+||||||+ .|..|+ +|| .. ..+++.++.... ...++|+||
T Consensus 121 --~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~~i~G~~~--~~~~~~~~~~~~-~~~~~vvVi 191 (488)
T 3dgz_A 121 --YFNIKASFVD--EHTVRGVDKGGKATLLSAEHIVIATGG--RPRYPTQVKGALE--YGITSDDIFWLK-ESPGKTLVV 191 (488)
T ss_dssp --EECCEEEESS--SSEEEEECTTSCEEEEEEEEEEECCCE--EECCCSSCBTHHH--HCBCHHHHTTCS-SCCCSEEEE
T ss_pred --EEEEEEEEcc--CCeEEEEeCCCceEEEECCEEEEcCCC--CCCCCCCCCCccc--ccCcHHHHHhhh-hcCCeEEEE
Confidence 1222332221 45667776666 46899999999998 899998 998 22 234554444332 346789999
Q ss_pred cCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy2343 143 GAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP 222 (396)
Q Consensus 143 G~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (396)
|+|.+|+|+|..+++.+.+|+++.|.. .+|.. + . .+.+.
T Consensus 192 GgG~ig~E~A~~l~~~g~~Vtlv~~~~--~l~~~----d---------~---------~~~~~----------------- 230 (488)
T 3dgz_A 192 GASYVALECAGFLTGIGLDTTVMMRSI--PLRGF----D---------Q---------QMSSL----------------- 230 (488)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTS----C---------H---------HHHHH-----------------
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEcCc--ccccC----C---------H---------HHHHH-----------------
Confidence 999999999999999999999999864 12211 1 0 11111
Q ss_pred CCCCCcccCccCchhhhcccCCCeEe--cCCcceEe---CC--eEEecC---Cc--EecCcEEEEccCCCCCCCCC--Cc
Q psy2343 223 DHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN---GN--IVHFVD---DT--HIEVDTIIYATGYNRHFPFI--DK 288 (396)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~---~~--~v~~~d---G~--~~~~D~VI~aTG~~~~~~~l--~~ 288 (396)
+.+.+....|++ ...+.+++ ++ .|.+.+ |+ .+++|.||+|||++|+..+| +.
T Consensus 231 --------------l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~ 296 (488)
T 3dgz_A 231 --------------VTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEK 296 (488)
T ss_dssp --------------HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGG
T ss_pred --------------HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccc
Confidence 111112223333 23455553 22 255554 55 37899999999999998874 44
Q ss_pred cccccc--CCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhccc
Q psy2343 289 EKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 289 ~~~~~~--~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
..+..+ ++.+.+... +.++.|+||++||+.. .....+.|..||+.+|.++.+..
T Consensus 297 ~g~~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 353 (488)
T 3dgz_A 297 AGISTNPKNQKIIVDAQ-EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 353 (488)
T ss_dssp GTCCBCSSSCCBCCCTT-SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCcEecCCCCeEeECCC-CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 455554 455666554 4689999999999963 34567789999999999998753
No 72
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=99.83 E-value=4.2e-20 Score=182.09 Aligned_cols=205 Identities=15% Similarity=0.085 Sum_probs=144.2
Q ss_pred CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343 81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158 (396)
Q Consensus 81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~ 158 (396)
.+.+.|...+| .++.||+||+|||. .|..|+.++.....++++.+.... ...+++|+|||+|.+|+|+|..+++.
T Consensus 126 ~~~~~v~~~~g~~~~~~~d~lvlAtG~--~p~~~~~~~~~~~~v~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~ 202 (476)
T 3lad_A 126 GKKVEVTAADGSSQVLDTENVILASGS--KPVEIPPAPVDQDVIVDSTGALDF-QNVPGKLGVIGAGVIGLELGSVWARL 202 (476)
T ss_dssp TTCEEEECTTSCEEEECCSCEEECCCE--EECCCTTSCCCSSSEEEHHHHTSC-SSCCSEEEEECCSHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCcccEEechhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 56788887777 46899999999998 777665544222346666655443 34578999999999999999999999
Q ss_pred CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343 159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL 238 (396)
Q Consensus 159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 238 (396)
+.+|+++.|.+.. +|.. + . .+.+ .+.
T Consensus 203 g~~Vtlv~~~~~~-l~~~----~---------~---------~~~~-------------------------------~l~ 228 (476)
T 3lad_A 203 GAEVTVLEAMDKF-LPAV----D---------E---------QVAK-------------------------------EAQ 228 (476)
T ss_dssp TCEEEEEESSSSS-STTS----C---------H---------HHHH-------------------------------HHH
T ss_pred CCcEEEEecCCCc-Cccc----C---------H---------HHHH-------------------------------HHH
Confidence 9999999998632 1110 0 0 1111 111
Q ss_pred hcccCCCeEe--cCCcceEeCC----eEEecCC---cEecCcEEEEccCCCCCCCC--CCcccccccC-Ccccccccccc
Q psy2343 239 YHIGHGDILP--KDDIKNLNGN----IVHFVDD---THIEVDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLFIHIAP 306 (396)
Q Consensus 239 ~~i~~g~i~~--~~~i~~i~~~----~v~~~dG---~~~~~D~VI~aTG~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~ 306 (396)
+.+.+..|++ ...|++++.. .|.+.++ +.+++|.||+|||++|+.++ ++...+..+. +.+.+.+. +.
T Consensus 229 ~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~ 307 (476)
T 3lad_A 229 KILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDY-CA 307 (476)
T ss_dssp HHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTT-SB
T ss_pred HHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCC-cc
Confidence 2222234444 3456666522 3667665 56899999999999999875 4444555543 45666554 56
Q ss_pred CCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 307 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 307 ~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
++.|+||++||+.......+.|..||+.+|..+.|..
T Consensus 308 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (476)
T 3lad_A 308 TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344 (476)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 8999999999998666678899999999999998864
No 73
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=99.83 E-value=2.4e-20 Score=183.11 Aligned_cols=225 Identities=12% Similarity=0.036 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCcEEEcCEEEEcccCCCCCC-CCCCCCCcccceeecccC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGKKKKYDFIAVCNGAQRVAR-YPNYSGYFSGEILHSMDY 128 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~~~~~d~vvvAtG~~~~p~-~P~~~g~~~g~~~hs~~~ 128 (396)
+..++..+.++.++. +..+ ++..++ .+.|.+ .+++++.||+||+|||. .|. .|.++|.. .++++.++
T Consensus 95 ~~~~~~~~~~~~gv~--~~~g-~~~~i~----~~~v~~~~~~~~~~~d~lviAtG~--~p~~~p~i~G~~--~~~~~~~~ 163 (463)
T 4dna_A 95 LEGLYRKGLANAGAE--ILDT-RAELAG----PNTVKLLASGKTVTAERIVIAVGG--HPSPHDALPGHE--LCITSNEA 163 (463)
T ss_dssp HHHHHHHHHHHHTCE--EEES-CEEESS----SSEEEETTTTEEEEEEEEEECCCE--EECCCTTSTTGG--GCBCHHHH
T ss_pred HHHHHHHHHHhCCCE--EEEE-EEEEee----CCEEEEecCCeEEEeCEEEEecCC--CcccCCCCCCcc--ccccHHHH
Confidence 334445555555654 4434 333332 246666 46777999999999998 888 99999821 23444444
Q ss_pred CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343 129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 208 (396)
Q Consensus 129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (396)
.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+... |.. + . .+.+.
T Consensus 164 ~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-~~~----~---------~---------~~~~~--- 216 (463)
T 4dna_A 164 FDLP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRF----D---------Q---------DMRRG--- 216 (463)
T ss_dssp TTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTS----C---------H---------HHHHH---
T ss_pred hhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-ccc----C---------H---------HHHHH---
Confidence 3332 347899999999999999999999999999999876321 110 0 0 11111
Q ss_pred HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEE-ecCCcEecCcEEEEccCCC
Q psy2343 209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVH-FVDDTHIEVDTIIYATGYN 280 (396)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~-~~dG~~~~~D~VI~aTG~~ 280 (396)
+.+.+....|++ ...|++++.+ .|. +.||+ +++|.||+|||++
T Consensus 217 ----------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~ 267 (463)
T 4dna_A 217 ----------------------------LHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM 267 (463)
T ss_dssp ----------------------------HHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred ----------------------------HHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence 111222223443 3467777532 477 78888 9999999999999
Q ss_pred CCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 281 RHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 281 ~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
|+..+ ++...++.+. +.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.|..
T Consensus 268 p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 332 (463)
T 4dna_A 268 PNTNGLGLEAAGVRTNELGAIIVDAF-SRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNN 332 (463)
T ss_dssp ESCTTSSTGGGTCCBCTTSCBCCCTT-CBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCCCCccccCceECCCCCEeECcC-CCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCCC
Confidence 99887 4445555543 55666655 468999999999998766778899999999999998753
No 74
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=99.83 E-value=8.8e-20 Score=179.35 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=143.9
Q ss_pred EEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHH
Q psy2343 73 EVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCD 150 (396)
Q Consensus 73 ~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d 150 (396)
+|..++ .+.++|.+.+| +++.||+||+|||+ .|+.|+++|.....++++.+..+.. ..+|+|+|||+|.+|+|
T Consensus 116 ~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~G~~~~~~~~~~~~~~~~-~~~~~vvViGgG~~g~E 190 (467)
T 1zk7_A 116 EARFKD--DQSLTVRLNEGGERVVMFDRCLVATGA--SPAVPPIPGLKESPYWTSTEALASD-TIPERLAVIGSSVVALE 190 (467)
T ss_dssp EEEEEE--TTEEEEEETTSSEEEEECSEEEECCCE--EECCCCCTTTTTSCCBCHHHHHHCS-SCCSEEEEECCSHHHHH
T ss_pred EEEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCC--CCCCCCCCCCCcCceecHHHHhccc-ccCCEEEEECCCHHHHH
Confidence 344444 56788888777 56899999999998 8999999982111345554443332 24799999999999999
Q ss_pred HHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy2343 151 IAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH 230 (396)
Q Consensus 151 ~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (396)
+|..+++.+.+|+++.|.+.. +| .+. .+.+.
T Consensus 191 ~A~~l~~~g~~Vtlv~~~~~~-l~-----~~~------------------~~~~~------------------------- 221 (467)
T 1zk7_A 191 LAQAFARLGSKVTVLARNTLF-FR-----EDP------------------AIGEA------------------------- 221 (467)
T ss_dssp HHHHHHHTTCEEEEECSSCTT-TT-----SCH------------------HHHHH-------------------------
T ss_pred HHHHHHHcCCEEEEEEECCcc-CC-----CCH------------------HHHHH-------------------------
Confidence 999999999999999987632 11 000 11111
Q ss_pred CccCchhhhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCC--Cccccccc-CCccccc
Q psy2343 231 PIMNSQILYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLF 301 (396)
Q Consensus 231 ~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~ 301 (396)
+.+.+.+..|++ ...|++++. . .|.+. +.++++|.||+|||++++..++ +...++.+ ++.+.+.
T Consensus 222 ------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd 294 (467)
T 1zk7_A 222 ------VTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVID 294 (467)
T ss_dssp ------HHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCC
T ss_pred ------HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEEC
Confidence 111111123443 345666642 2 24444 5679999999999999998764 34445554 3446665
Q ss_pred cccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 302 ~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus 295 ~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 295 QG-MRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp TT-CBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred CC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 54 57889999999999876667888999999999998765
No 75
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=99.82 E-value=1.1e-20 Score=184.12 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=164.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 122 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~ 122 (396)
....+++..++..++++.++. + ++++|+.|+.+++ +|++++++++.||+||+|||. .|+.|.+|| .+.+..
T Consensus 55 ~~~~~~~~~~l~~~~~~~gv~--~-~~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~--~~~~~~ipG~~~~~~~~ 127 (437)
T 3sx6_A 55 WKERDDIAFPIRHYVERKGIH--F-IAQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGP--KLAFENVPGSDPHEGPV 127 (437)
T ss_dssp SSCHHHHEEECHHHHHTTTCE--E-ECSCEEEEETTTT--EEEETTSCEEECSEEEECCCC--EECGGGSTTCSTTTSSE
T ss_pred ccCHHHHHHHHHHHHHHCCCE--E-EEeEEEEEEcCCC--EEEECCCCEEECCEEEECCCC--CcCcccCCCCCcccCcc
Confidence 345678888888999888876 4 3679999987544 788888888999999999999 888888998 333544
Q ss_pred eecccCCCCCCC--------CCCeEEEEcCCCcH------HHHHHHHh----cCCCc-----EEEEeccCceeecCCCCC
Q psy2343 123 LHSMDYKSPDQI--------RNKRVLVVGAGNSG------CDIAVDAS----HHSEK-----VYHSTRRGYHYYPKFIDG 179 (396)
Q Consensus 123 ~hs~~~~~~~~~--------~~k~VvVVG~G~sa------~d~a~~l~----~~~~~-----V~l~~r~~~~~~p~~~~~ 179 (396)
++.+.+.+...+ ++++++|||+|.+| +|+|..++ +.+.+ |+++.+.+.. .+....+
T Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~-~~~~l~~ 206 (437)
T 3sx6_A 128 QSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYI-GHLGIQG 206 (437)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSST-TCTTTTC
T ss_pred eecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccc-cccccCc
Confidence 444444332211 25678999998776 88886554 43332 9999987631 0000000
Q ss_pred CChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC
Q psy2343 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG 257 (396)
Q Consensus 180 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~ 257 (396)
.+ .....+.+.+.+..|++. ..|+++++
T Consensus 207 ~~--------------------------------------------------~~~~~~~~~l~~~gI~~~~~~~v~~v~~ 236 (437)
T 3sx6_A 207 VG--------------------------------------------------DSKGILTKGLKEEGIEAYTNCKVTKVED 236 (437)
T ss_dssp CT--------------------------------------------------THHHHHHHHHHHTTCEEECSEEEEEEET
T ss_pred ch--------------------------------------------------HHHHHHHHHHHHCCCEEEcCCEEEEEEC
Confidence 00 001112222333345543 46888888
Q ss_pred CeEEecC---------CcEecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC------
Q psy2343 258 NIVHFVD---------DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA------ 322 (396)
Q Consensus 258 ~~v~~~d---------G~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~------ 322 (396)
+.+.+++ |+++++|.|++|+|+++..++.+...+..+++.+.+...+..+++|+||++||+....
T Consensus 237 ~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~ 316 (437)
T 3sx6_A 237 NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTP 316 (437)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCS
T ss_pred CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCc
Confidence 8888765 6678999999999999874444333443345678888776666999999999997532
Q ss_pred ------chhhHHHHHHHHHHHHHhcccc
Q psy2343 323 ------GLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 323 ------~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
.....|..||+.+|++|...+.
T Consensus 317 ~~~~~pk~~~~A~~qg~~aA~ni~~~l~ 344 (437)
T 3sx6_A 317 VPTGAPKTGYMIESMVSAAVHNIKADLE 344 (437)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 2567899999999999886654
No 76
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=99.82 E-value=5.3e-20 Score=181.46 Aligned_cols=200 Identities=17% Similarity=0.124 Sum_probs=139.2
Q ss_pred CeEEEEEccCcEEEcCEEEEcccCCCCCCCC---CCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343 82 DIWEVELSNGKKKKYDFIAVCNGAQRVARYP---NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158 (396)
Q Consensus 82 ~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P---~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~ 158 (396)
+.+.|+ .+++++.||+||||||+ .|..| ++||.. .++++.++..... .+|+|+|||+|.+|+|+|..+++.
T Consensus 136 ~~~~v~-~~g~~~~~d~lviAtG~--~p~~p~~~~i~G~~--~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~ 209 (478)
T 3dk9_A 136 PKPTIE-VSGKKYTAPHILIATGG--MPSTPHESQIPGAS--LGITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSAL 209 (478)
T ss_dssp SSCEEE-ETTEEEECSCEEECCCE--EECCCCTTTSTTGG--GSBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHT
T ss_pred CeEEEE-ECCEEEEeeEEEEccCC--CCCCCCcCCCCCCc--eeEchHHhhchhh-cCccEEEECCCHHHHHHHHHHHHc
Confidence 446676 35667999999999998 89988 888822 2345554444333 378999999999999999999999
Q ss_pred CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343 159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL 238 (396)
Q Consensus 159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 238 (396)
+.+|+++.|.+... |.. + . .+.+. +.
T Consensus 210 g~~Vtlv~~~~~~l-~~~----d---------~---------~~~~~-------------------------------~~ 235 (478)
T 3dk9_A 210 GSKTSLMIRHDKVL-RSF----D---------S---------MISTN-------------------------------CT 235 (478)
T ss_dssp TCEEEEECSSSSSC-TTS----C---------H---------HHHHH-------------------------------HH
T ss_pred CCeEEEEEeCCccc-ccc----C---------H---------HHHHH-------------------------------HH
Confidence 99999999976421 211 0 0 11111 11
Q ss_pred hcccCCCeEec--CCcceEeC--C----eEEecC---C----cEecCcEEEEccCCCCCCCCC--Cccccccc-CCcccc
Q psy2343 239 YHIGHGDILPK--DDIKNLNG--N----IVHFVD---D----THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDL 300 (396)
Q Consensus 239 ~~i~~g~i~~~--~~i~~i~~--~----~v~~~d---G----~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l 300 (396)
+.+.+..|++. ..|++++. + .|.+.| | +.+++|.||+|||++|+..+| +...++.+ ++.+.+
T Consensus 236 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~v 315 (478)
T 3dk9_A 236 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIV 315 (478)
T ss_dssp HHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCC
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEee
Confidence 12222234433 34556642 2 255665 2 568999999999999998854 44445553 455666
Q ss_pred ccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343 301 FIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 342 (396)
Q Consensus 301 ~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~ 342 (396)
... +.++.|+||++||+.......+.|..||+.+|..+.+.
T Consensus 316 d~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 316 DEF-QNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred CCC-cccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 554 47899999999999866667888999999999999876
No 77
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.81 E-value=4.1e-21 Score=185.70 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=161.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc----EEEcCEEEEcccCCCCCCCCCCCC-Cc
Q psy2343 44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK----KKKYDFIAVCNGAQRVARYPNYSG-YF 118 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~----~~~~d~vvvAtG~~~~p~~P~~~g-~~ 118 (396)
.....+++..++.+.++++++. ++.+ +|+.++.+++ .|+++++. ++.||+||+|||. .|+.|.+|| ..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~~~--~V~~~~g~~~~~~~~~d~lViAtG~--~~~~~~ipG~~~ 123 (409)
T 3h8l_A 51 GVRDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAKSS--MVYYTKPDGSMAEEEYDYVIVGIGA--HLATELVKGWDK 123 (409)
T ss_dssp SCCCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETTTT--EEEEECTTSCEEEEECSEEEECCCC--EECGGGSBTHHH
T ss_pred CCcCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCCCC--EEEEccCCcccceeeCCEEEECCCC--CcCccCCCChhh
Confidence 3445566777788888888886 6666 9999987655 45555544 3889999999999 888888888 32
Q ss_pred ccceeecccCCCCCCCC------CCeEEEEcCC-------------------C------cHHHHHHHHh----cCC----
Q psy2343 119 SGEILHSMDYKSPDQIR------NKRVLVVGAG-------------------N------SGCDIAVDAS----HHS---- 159 (396)
Q Consensus 119 ~g~~~hs~~~~~~~~~~------~k~VvVVG~G-------------------~------sa~d~a~~l~----~~~---- 159 (396)
...|.+.+.+...++ .++++|||+| . .++|+|..++ +.+
T Consensus 124 --~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~ 201 (409)
T 3h8l_A 124 --YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDK 201 (409)
T ss_dssp --HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTT
T ss_pred --cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 234444443332222 2577899999 2 2678776554 444
Q ss_pred CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhh
Q psy2343 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239 (396)
Q Consensus 160 ~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 239 (396)
.+|+++.+.+ .+|.. + . .+.+. +.+
T Consensus 202 ~~v~~~~~~~--~l~~~----~---------~---------~~~~~-------------------------------~~~ 226 (409)
T 3h8l_A 202 VHVTVFSPGE--YLSDL----S---------P---------NSRKA-------------------------------VAS 226 (409)
T ss_dssp EEEEEECSSS--SSTTB----C---------H---------HHHHH-------------------------------HHH
T ss_pred eEEEEEeCCc--ccccc----C---------H---------HHHHH-------------------------------HHH
Confidence 3799998875 22211 0 0 11111 111
Q ss_pred cccCCCeEe--cCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc--cccccCCccccccccccCCCCcEEEE
Q psy2343 240 HIGHGDILP--KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE--KLEWKLGIPDLFIHIAPRNLDNIFFF 315 (396)
Q Consensus 240 ~i~~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~--~~~~~~~~~~l~~~~~~~~~p~l~~i 315 (396)
.+++..|++ ...|+++++++|+++||+++++|.||+|+|++++ +++... .+..+++.+.+...+..+++||||++
T Consensus 227 ~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~ 305 (409)
T 3h8l_A 227 IYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAV 305 (409)
T ss_dssp HHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEEC
T ss_pred HHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcccccCCCCCEEEe
Confidence 122224554 3568999999999999999999999999999987 566544 33334566888877666689999999
Q ss_pred ecccCc--CchhhHHHHHHHHHHHHHhccc
Q psy2343 316 GFVNAA--AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 316 G~~~~~--~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
||+... ......|+.||+.+|++|.+.+
T Consensus 306 GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 306 GDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp GGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999853 4567789999999999998876
No 78
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.81 E-value=5.7e-19 Score=174.29 Aligned_cols=227 Identities=15% Similarity=0.096 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCCCCC-CCCCCCCcccceeeccc
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVAR-YPNYSGYFSGEILHSMD 127 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~~p~-~P~~~g~~~g~~~hs~~ 127 (396)
.+.+++....+..++. +..+ ++..++ .. .|.+. ++..+.||+||+|||. .|. .|.++|.. .++++.+
T Consensus 115 ~~~~~~~~~~~~~~v~--~~~g-~~~~i~--~~--~v~v~~~~~~~~~d~lviAtG~--~p~~~p~i~G~~--~~~~~~~ 183 (484)
T 3o0h_A 115 RLEGLYREGLQNSNVH--IYES-RAVFVD--EH--TLELSVTGERISAEKILIATGA--KIVSNSAIKGSD--LCLTSNE 183 (484)
T ss_dssp HHHHHHHHHHHHTTCE--EEES-CEEEEE--TT--EEEETTTCCEEEEEEEEECCCE--EECCC--CBTGG--GSBCTTT
T ss_pred HHHHHHHHHHHhCCCE--EEEe-EEEEee--CC--EEEEecCCeEEEeCEEEEccCC--CcccCCCCCCcc--ccccHHH
Confidence 3444455555666664 4444 444444 22 55565 6777999999999998 788 88888821 2344443
Q ss_pred CCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHH
Q psy2343 128 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF 207 (396)
Q Consensus 128 ~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 207 (396)
+... ...+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.. + . .+...
T Consensus 184 ~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~----~---------~---------~~~~~-- 237 (484)
T 3o0h_A 184 IFDL-EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI-LRNF----D---------Y---------DLRQL-- 237 (484)
T ss_dssp GGGC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS----C---------H---------HHHHH--
T ss_pred HHhH-HhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc-cccc----C---------H---------HHHHH--
Confidence 3332 234789999999999999999999999999999987632 1110 0 0 11111
Q ss_pred HHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEccCCCC
Q psy2343 208 KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNR 281 (396)
Q Consensus 208 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~ 281 (396)
+.+.+.+..|++ ...|++++.+ .|.+.||+++++|.||+|||+++
T Consensus 238 -----------------------------l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p 288 (484)
T 3o0h_A 238 -----------------------------LNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVP 288 (484)
T ss_dssp -----------------------------HHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEE
T ss_pred -----------------------------HHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCc
Confidence 111111113343 3467777543 47889999999999999999999
Q ss_pred CCCCCC--cccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343 282 HFPFID--KEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 282 ~~~~l~--~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+..+|. ...+..+. +.+.+... +.++.|+||++||+.......+.|..||+.+|..+.+..
T Consensus 289 ~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 352 (484)
T 3o0h_A 289 NTTGLGLERAGVKVNEFGAVVVDEK-MTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENT 352 (484)
T ss_dssp CCTTCCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCChhhcCceECCCCCEeECCC-CCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence 988753 34455543 44555544 568999999999998766778899999999999998753
No 79
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.81 E-value=2.2e-20 Score=182.52 Aligned_cols=254 Identities=17% Similarity=0.191 Sum_probs=149.4
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
|+++..+++..|+..+++++++. ++.+++| +. .|+++++. +.||+||+|||+. .|+.|++|| .+.|
T Consensus 55 p~~~~~~~~~~~~~~~~~~~~v~--~~~~v~v------~~--~v~~~~~~-~~~d~lViAtG~~-~~~~~~ipG~~~~g- 121 (456)
T 1lqt_A 55 PDHPKIKSISKQFEKTAEDPRFR--FFGNVVV------GE--HVQPGELS-ERYDAVIYAVGAQ-SDRMLNIPGEDLPG- 121 (456)
T ss_dssp TTCTGGGGGHHHHHHHHTSTTEE--EEESCCB------TT--TBCHHHHH-HHSSEEEECCCCC-EECCCCCTTTTSTT-
T ss_pred CCCCCHHHHHHHHHHHHhcCCCE--EEeeEEE------CC--EEEECCCe-EeCCEEEEeeCCC-CCCCCCCCCCCCCC-
Confidence 45566778999999999887765 5555442 11 24444453 6899999999992 267778898 6555
Q ss_pred eeecccC-----------CCCCCCCCCeEEEEcCCCcHHHHHHHHhcC---------------------CCcEEEEeccC
Q psy2343 122 ILHSMDY-----------KSPDQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRRG 169 (396)
Q Consensus 122 ~~hs~~~-----------~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~---------------------~~~V~l~~r~~ 169 (396)
++++.++ ++...+++++|+|||+|++|+|+|..|++. .++|+++.|++
T Consensus 122 v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~ 201 (456)
T 1lqt_A 122 SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 201 (456)
T ss_dssp EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence 5565443 333346799999999999999999999974 46899999987
Q ss_pred ceeecCCCCCCChhHHHH--hhC--------ccccC---------hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy2343 170 YHYYPKFIDGKPTPQWML--QLG--------NKFSS---------KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH 230 (396)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~--~~p--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (396)
..... + ....+.. .+| ..+.. +.....+.+.+.+....... +
T Consensus 202 ~~~~~-f----~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~-------- 262 (456)
T 1lqt_A 202 PLQAA-F----TTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPR------P-------- 262 (456)
T ss_dssp GGGCC-C----CHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-C------T--------
T ss_pred hhhhc-c----ChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCC------C--------
Confidence 42110 0 0001000 011 11100 00000001111111110000 0
Q ss_pred CccCchhhhcccCCCeEec--CCcceEeCC----eEEec----------------CC--cEecCcEEEEccCCCCCCCCC
Q psy2343 231 PIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFV----------------DD--THIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 231 ~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~----------------dG--~~~~~D~VI~aTG~~~~~~~l 286 (396)
....|.+. ..+.++.++ +|.+. +| +.+++|.||+|+||+++. +
T Consensus 263 -----------~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~--l 329 (456)
T 1lqt_A 263 -----------GHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP--T 329 (456)
T ss_dssp -----------TSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC--C
T ss_pred -----------CCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC--C
Confidence 00123332 234444332 24443 45 358999999999999985 2
Q ss_pred Cccccccc-CCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHHhccc
Q psy2343 287 DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 287 ~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l~~~~ 343 (396)
. .+..+ .+++.+......++.|+||++||+..... .+..+..||+.+|..|.+.+
T Consensus 330 ~--gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 330 P--GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp T--TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred C--CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2 23333 34555555555578999999999975332 34568888888888776554
No 80
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=99.80 E-value=1.8e-19 Score=182.55 Aligned_cols=234 Identities=16% Similarity=0.144 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCc-------e-EeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNH-------S-IFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYS 115 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~-------i-~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~ 115 (396)
....++.+|++.+++++..... + .+...+..++ .....+...+| .++.||+||||||+ .|+.|++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~--~~~v~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~ 267 (598)
T 2x8g_A 192 HNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLIS--PHEVQITDKNQKVSTITGNKIILATGE--RPKYPEIP 267 (598)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEE--TTEEEEECTTCCEEEEEEEEEEECCCE--EECCCSST
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcC--CCEEEEEeCCCCeEEEEeCEEEEeCCC--CCCCCCCC
Confidence 4567888888887765321100 1 1122222222 33344444556 35899999999998 89999999
Q ss_pred C-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343 116 G-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194 (396)
Q Consensus 116 g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 194 (396)
| .. ..+++.++... ...+++|+|||+|.+|+|+|..|++.+.+|+++.|+. ++|.. +.
T Consensus 268 G~~~--~~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~l~~~----d~------------ 326 (598)
T 2x8g_A 268 GAVE--YGITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGF----DQ------------ 326 (598)
T ss_dssp THHH--HCEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTS----CH------------
T ss_pred Cccc--ceEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCc--CcCcC----CH------------
Confidence 8 21 13455444332 3457899999999999999999999999999999862 22211 10
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceE--------eC---CeE-
Q psy2343 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNL--------NG---NIV- 260 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i--------~~---~~v- 260 (396)
.+...+. +.+.+..|++. ..+.++ +. +.+
T Consensus 327 ------~~~~~~~-------------------------------~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~ 369 (598)
T 2x8g_A 327 ------QMAEKVG-------------------------------DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL 369 (598)
T ss_dssp ------HHHHHHH-------------------------------HHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE
T ss_pred ------HHHHHHH-------------------------------HHHHhCCCEEEECCeEEEEEeccccccccCCCceEE
Confidence 1111111 11111122221 112222 11 222
Q ss_pred ---EecCCcEec--CcEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHH
Q psy2343 261 ---HFVDDTHIE--VDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQ 331 (396)
Q Consensus 261 ---~~~dG~~~~--~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~q 331 (396)
.+.+|+.++ +|.||+|+|++|+.++| +...++.+ .+.+.+... +.++.|+||++||+... ...++.|..|
T Consensus 370 v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~ts~~~VyA~GD~~~~~~~~~~~A~~~ 448 (598)
T 2x8g_A 370 VKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDD-EQTTVSNVYAIGDINAGKPQLTPVAIQA 448 (598)
T ss_dssp EEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBTTSCCCHHHHHHH
T ss_pred EEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCC-CcCCCCCEEEEeeecCCCCccHHHHHHh
Confidence 246787654 99999999999998875 33445553 355666655 56899999999999543 4567889999
Q ss_pred HHHHHHHHhcc
Q psy2343 332 GQFIRSYIQAF 342 (396)
Q Consensus 332 a~~~a~~l~~~ 342 (396)
|+.+|..+.+.
T Consensus 449 g~~aa~~i~~~ 459 (598)
T 2x8g_A 449 GRYLARRLFAG 459 (598)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 81
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.80 E-value=6.3e-21 Score=188.53 Aligned_cols=221 Identities=14% Similarity=0.161 Sum_probs=149.4
Q ss_pred cCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCC----cccceeecccCCCCC-----
Q psy2343 62 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY----FSGEILHSMDYKSPD----- 132 (396)
Q Consensus 62 ~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~----~~g~~~hs~~~~~~~----- 132 (396)
.++. ++++++|++|+... ++|++++|+++.||+||||||+ .|+.|++++. +...+.+.....+..
T Consensus 103 ~gv~--~~~g~~v~~id~~~--~~V~~~~g~~i~yd~lviATGs--~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~ 176 (493)
T 1m6i_A 103 GGVA--VLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGG--TPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKI 176 (493)
T ss_dssp CEEE--EEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCE--EECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHH
T ss_pred CCeE--EEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCC--CCCCCCCcccccccccCceEEEcCHHHHHHHHHH
Confidence 4444 77889999998653 4788888888999999999998 7887765541 112222222211111
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 208 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (396)
...+|+|+|||+|.+|+|+|..|++. +.+|+++.+.+.. +++. +|. .+...
T Consensus 177 ~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~~------------l~~---------~~~~~--- 231 (493)
T 1m6i_A 177 SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGKI------------LPE---------YLSNW--- 231 (493)
T ss_dssp HHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTTT------------SCH---------HHHHH---
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-cccc------------CCH---------HHHHH---
Confidence 12479999999999999999999873 5679999876421 0100 111 11111
Q ss_pred HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCC
Q psy2343 209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRH 282 (396)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~ 282 (396)
+.+.+.+..|++ ...|+++++ + .|.+.||+++++|.||+|+|++++
T Consensus 232 ----------------------------~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 232 ----------------------------TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN 283 (493)
T ss_dssp ----------------------------HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred ----------------------------HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence 112222223444 346777753 2 477889999999999999999999
Q ss_pred CCCCCcccccccC--CccccccccccCCCCcEEEEecccCc---------CchhhHHHHHHHHHHHHHhccc
Q psy2343 283 FPFIDKEKLEWKL--GIPDLFIHIAPRNLDNIFFFGFVNAA---------AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 283 ~~~l~~~~~~~~~--~~~~l~~~~~~~~~p~l~~iG~~~~~---------~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
..+++...+..++ +++.+..++. + .|+||++||+... ...++.|..||+.+|.++.|..
T Consensus 284 ~~l~~~~gl~~~~~~ggi~Vd~~l~-t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~ 353 (493)
T 1m6i_A 284 VELAKTGGLEIDSDFGGFRVNAELQ-A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 353 (493)
T ss_dssp CTTHHHHTCCBCTTTCSEECCTTCE-E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCccccCCCcEEECCCcc-c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 8888766666543 5676666654 4 5999999999742 1245689999999999998763
No 82
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.78 E-value=1.3e-19 Score=177.18 Aligned_cols=116 Identities=18% Similarity=0.260 Sum_probs=82.9
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343 43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 121 (396)
Q Consensus 43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~ 121 (396)
|.++..+++..++..+++++++. ++++++|. . .|++++.. +.||+||+|||+. .++.|++|| ...|
T Consensus 53 p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~------~--~V~~~~~~-~~~d~lVlAtGs~-~~~~~~ipG~~~~g- 119 (460)
T 1cjc_A 53 PDHPEVKNVINTFTQTARSDRCA--FYGNVEVG------R--DVTVQELQ-DAYHAVVLSYGAE-DHQALDIPGEELPG- 119 (460)
T ss_dssp TTCGGGGGHHHHHHHHHTSTTEE--EEBSCCBT------T--TBCHHHHH-HHSSEEEECCCCC-EECCCCCTTTTSTT-
T ss_pred CCCccHHHHHHHHHHHHHhCCcE--EEeeeEEe------e--EEEeccce-EEcCEEEEecCcC-CCCCCCCCCCCCCc-
Confidence 44555678889999999888876 77776652 1 23333333 6899999999993 247788998 5444
Q ss_pred eeecccC----------CCCC-CCCCCeEEEEcCCCcHHHHHHHHhc--------------------C-CCcEEEEeccC
Q psy2343 122 ILHSMDY----------KSPD-QIRNKRVLVVGAGNSGCDIAVDASH--------------------H-SEKVYHSTRRG 169 (396)
Q Consensus 122 ~~hs~~~----------~~~~-~~~~k~VvVVG~G~sa~d~a~~l~~--------------------~-~~~V~l~~r~~ 169 (396)
++++.++ .... .+.+|+|+|||+|++|+|+|..|++ . .++|+++.|++
T Consensus 120 v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 120 VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 4554333 2222 3478999999999999999999993 3 35799999987
Q ss_pred ce
Q psy2343 170 YH 171 (396)
Q Consensus 170 ~~ 171 (396)
..
T Consensus 200 ~~ 201 (460)
T 1cjc_A 200 PL 201 (460)
T ss_dssp GG
T ss_pred hH
Confidence 43
No 83
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=99.75 E-value=6.4e-18 Score=167.74 Aligned_cols=205 Identities=18% Similarity=0.136 Sum_probs=138.2
Q ss_pred CCeEEEEEc----cCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHh
Q psy2343 81 EDIWEVELS----NGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 156 (396)
Q Consensus 81 ~~~~~V~~~----~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~ 156 (396)
.+...|... +++++++|++|||||+ +|.+|+..+.....+++|.+.-+... ..++++|||||.+|+|+|..++
T Consensus 167 ~~~v~V~~~~~~~~~~~i~a~~iiIATGs--~P~~P~~~~~~~~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~ 243 (542)
T 4b1b_A 167 KNTVSYYLKGDLSKEETVTGKYILIATGC--RPHIPDDVEGAKELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLN 243 (542)
T ss_dssp TTEEEEEEC--CCCEEEEEEEEEEECCCE--EECCCSSSBTHHHHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHH
T ss_pred CCcceEeecccCCceEEEeeeeEEeccCC--CCCCCCcccCCCccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHH
Confidence 444455443 2346899999999999 89988654422223455555544433 3579999999999999999999
Q ss_pred cCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch
Q psy2343 157 HHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ 236 (396)
Q Consensus 157 ~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (396)
+.+.+||++.|.. .+|.. .. .+...+
T Consensus 244 ~lG~~VTii~~~~--~L~~~----D~------------------ei~~~l------------------------------ 269 (542)
T 4b1b_A 244 SLGYDVTVAVRSI--VLRGF----DQ------------------QCAVKV------------------------------ 269 (542)
T ss_dssp HHTCCEEEEESSC--SSTTS----CH------------------HHHHHH------------------------------
T ss_pred hcCCeEEEecccc--ccccc----ch------------------hHHHHH------------------------------
Confidence 9999999998753 22321 00 111111
Q ss_pred hhhcccCCCeE--ecCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCCCccc--cccc-CCccccccccccC
Q psy2343 237 ILYHIGHGDIL--PKDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK--LEWK-LGIPDLFIHIAPR 307 (396)
Q Consensus 237 ~~~~i~~g~i~--~~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~--~~~~-~~~~~l~~~~~~~ 307 (396)
...+....|. ....+++++. + .|.+.+++.+.+|.|++|||.+|+...|.-+. +..+ .+.....+..+.|
T Consensus 270 -~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T 348 (542)
T 4b1b_A 270 -KLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT 348 (542)
T ss_dssp -HHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC
T ss_pred -HHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc
Confidence 1111111233 2334555542 2 36678888899999999999999998776443 3333 3444455667789
Q ss_pred CCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343 308 NLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 308 ~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
+.|+||++||+... ..+.+.+..|++.++..+.+..
T Consensus 349 s~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~ 385 (542)
T 4b1b_A 349 NIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDS 385 (542)
T ss_dssp SSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999754 3577889999999999998753
No 84
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=99.74 E-value=3.9e-19 Score=175.71 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=142.4
Q ss_pred CcEEEEEEEeCCeEEEEE------------------ccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeec----cc
Q psy2343 71 NTEVINLEQYEDIWEVEL------------------SNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS----MD 127 (396)
Q Consensus 71 ~t~V~~v~~~~~~~~V~~------------------~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs----~~ 127 (396)
..+|++|+++.+..++.. .++.++.||+||||||+ .|+.|.+|| .-.+..+.+ ..
T Consensus 115 ~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs--~~~~~~ipG~~e~a~~l~t~~dA~~ 192 (502)
T 4g6h_A 115 EAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA--EPNTFGIPGVTDYGHFLKEIPNSLE 192 (502)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC--EECCTTCTTHHHHCEECSSHHHHHH
T ss_pred EEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc--ccccCCccCcccccCCCCCHHHHHH
Confidence 568899988766544432 12456899999999999 899999999 211100100 00
Q ss_pred C--------------CCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCC--------------CcEEEEeccCceeecCCC
Q psy2343 128 Y--------------KSPD--QIRNKRVLVVGAGNSGCDIAVDASHHS--------------EKVYHSTRRGYHYYPKFI 177 (396)
Q Consensus 128 ~--------------~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~--------------~~V~l~~r~~~~~~p~~~ 177 (396)
+ .... .-...+++|||+|.+|+|+|.+|++.. .+|+++.+.+. ++|..
T Consensus 193 ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~-il~~~- 270 (502)
T 4g6h_A 193 IRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI-VLNMF- 270 (502)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSS-SSTTS-
T ss_pred HHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccc-cccCC-
Confidence 0 0000 012257999999999999999987642 46899988764 22211
Q ss_pred CCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceE
Q psy2343 178 DGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNL 255 (396)
Q Consensus 178 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i 255 (396)
+ . .+.+. +.+.+++..|++ ...|+++
T Consensus 271 ---~---------~---------~~~~~-------------------------------~~~~L~~~GV~v~~~~~v~~v 298 (502)
T 4g6h_A 271 ---E---------K---------KLSSY-------------------------------AQSHLENTSIKVHLRTAVAKV 298 (502)
T ss_dssp ---C---------H---------HHHHH-------------------------------HHHHHHHTTCEEETTEEEEEE
T ss_pred ---C---------H---------HHHHH-------------------------------HHHHHHhcceeeecCceEEEE
Confidence 1 1 11111 111122223444 4568888
Q ss_pred eCCeEEe----cCCc----EecCcEEEEccCCCCCCCCCCc----ccccc-cCCccccccccccCCCCcEEEEecccCc-
Q psy2343 256 NGNIVHF----VDDT----HIEVDTIIYATGYNRHFPFIDK----EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA- 321 (396)
Q Consensus 256 ~~~~v~~----~dG~----~~~~D~VI~aTG~~~~~~~l~~----~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~- 321 (396)
+++++.+ .||+ ++++|.||||+|.+++ |++.. ..... +.+++.+.+.+..+++|+||++||+...
T Consensus 299 ~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~-~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~ 377 (502)
T 4g6h_A 299 EEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAG 377 (502)
T ss_dssp CSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC-HHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESS
T ss_pred eCCceEEEEEecCcccceeeeccCEEEEccCCcCC-HHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCC
Confidence 8887665 4664 4899999999999987 33221 11222 3466778777777799999999998643
Q ss_pred -CchhhHHHHHHHHHHHHHhccccCCC
Q psy2343 322 -AGLGDGLRLQGQFIRSYIQAFIRKSK 347 (396)
Q Consensus 322 -~~~~~~ae~qa~~~a~~l~~~~~lp~ 347 (396)
....+.|..||+++|++|.+..+.+.
T Consensus 378 ~p~~a~~A~qqg~~~A~ni~~~~~~~~ 404 (502)
T 4g6h_A 378 LPPTAQVAHQEAEYLAKNFDKMAQIPN 404 (502)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhccch
Confidence 45678899999999999988766554
No 85
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.73 E-value=1.7e-18 Score=178.70 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=145.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC------CCCCCCCC--Cc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV------ARYPNYSG--YF 118 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~------p~~P~~~g--~~ 118 (396)
....+.+|++..++.+. ..+..++.+.. + ..|+++++..+.||+||||||.... |..|++|| .+
T Consensus 439 ~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~-~--~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~ 510 (729)
T 1o94_A 439 EWSYHRDYRETQITKLL-----KKNKESQLALG-Q--KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADAS 510 (729)
T ss_dssp GGHHHHHHHHHHHHHHH-----HHSTTCEEECS-C--CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTT
T ss_pred HHHHHHHHHHHHHHHhh-----cccCCceEEEe-C--eEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCcccc
Confidence 34567778877776541 01111222211 1 1344445545789999999999422 57788898 34
Q ss_pred ccceeecccCCCCCCCCCCeEEEEc--CCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343 119 SGEILHSMDYKSPDQIRNKRVLVVG--AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196 (396)
Q Consensus 119 ~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 196 (396)
.+.++++.++.+.....+|+|+||| +|.+|+|+|..|++.+.+|+++.|++ +.+.. .++..
T Consensus 511 ~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~--l~~~~-----------~~~~~---- 573 (729)
T 1o94_A 511 LPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH--LANYM-----------HFTLE---- 573 (729)
T ss_dssp STTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC--TTHHH-----------HHTTC----
T ss_pred CCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc--ccccc-----------ccccc----
Confidence 5567787777665566799999999 99999999999999999999999875 11100 00000
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCeEEe----cCC-cE--
Q psy2343 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNIVHF----VDD-TH-- 267 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~v~~----~dG-~~-- 267 (396)
...+.+.+.+..|++. ..+++++++++.+ .++ +.
T Consensus 574 -------------------------------------~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~ 616 (729)
T 1o94_A 574 -------------------------------------YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTY 616 (729)
T ss_dssp -------------------------------------HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCC
T ss_pred -------------------------------------HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEec
Confidence 0011111222234433 3466666665544 233 22
Q ss_pred ----------------ecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHH
Q psy2343 268 ----------------IEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQ 331 (396)
Q Consensus 268 ----------------~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~q 331 (396)
+++|.||+|+|++++..+++.... .. ...+.++.|+||++||+.. ...+..|..|
T Consensus 617 ~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~v-d~~~~t~~~~VyAiGD~~~-~~~~~~A~~~ 687 (729)
T 1o94_A 617 RGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RE-SEWAENDIKGIYLIGDAEA-PRLIADATFT 687 (729)
T ss_dssp CCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TG-GGTGGGTCCEEEECGGGTS-CCCHHHHHHH
T ss_pred ccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hc-ccccccCCCCeEEEeCccc-hhhHHHHHHH
Confidence 899999999999999776542111 11 1234578899999999975 3456789999
Q ss_pred HHHHHHHHhcccc
Q psy2343 332 GQFIRSYIQAFIR 344 (396)
Q Consensus 332 a~~~a~~l~~~~~ 344 (396)
|+.+|..|.+.+.
T Consensus 688 G~~aA~~i~~~l~ 700 (729)
T 1o94_A 688 GHRVAREIEEANP 700 (729)
T ss_dssp HHHHHHTTTSSCT
T ss_pred HHHHHHHhhhhcc
Confidence 9999999987643
No 86
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.72 E-value=2.7e-18 Score=176.38 Aligned_cols=222 Identities=10% Similarity=0.001 Sum_probs=156.2
Q ss_pred CCCChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC------CCCCCCCC
Q psy2343 44 VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV------ARYPNYSG 116 (396)
Q Consensus 44 ~~p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~------p~~P~~~g 116 (396)
.+....++.+|+...++++ ++. ++++++| +.+++.++.||+||+|||.... |..|.++|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v------------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G 503 (690)
T 3k30_A 438 GLSAWGRVKEYREAVLAELPNVE--IYRESPM------------TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPI 503 (690)
T ss_dssp TCGGGGHHHHHHHHHHHTCTTEE--EESSCCC------------CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCB
T ss_pred chhHHHHHHHHHHHHHHHcCCCE--EEECCee------------cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCC
Confidence 3445678999999999987 765 6666543 2233444689999999999422 56788888
Q ss_pred CcccceeecccCCCCCCCCCCeEEEEc--CCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343 117 YFSGEILHSMDYKSPDQIRNKRVLVVG--AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194 (396)
Q Consensus 117 ~~~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 194 (396)
.....++++.++.......+++|+||| +|.+|+|+|..|++.+.+|+++.+.+... +. ..
T Consensus 504 ~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~-~~-----------------~~ 565 (690)
T 3k30_A 504 AEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS-SW-----------------TN 565 (690)
T ss_dssp CTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTT-GG-----------------GG
T ss_pred CCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccc-cc-----------------cc
Confidence 434567888777776667899999999 99999999999999999999999876310 00 00
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEec-----CCcE
Q psy2343 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFV-----DDTH 267 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~-----dG~~ 267 (396)
. +.....+.+.+.+..|++ ...|++++++++.+. ++++
T Consensus 566 ~-----------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~ 610 (690)
T 3k30_A 566 N-----------------------------------TFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERE 610 (690)
T ss_dssp G-----------------------------------GTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEE
T ss_pred c-----------------------------------chhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEE
Confidence 0 000111222222234444 446888888776654 4556
Q ss_pred ecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343 268 IEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 268 ~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~ 344 (396)
+++|.||+|||++++..+++.... . + . .++.|+||++||+... ..+..|..||+.+|..+.+.+.
T Consensus 611 i~aD~VV~A~G~~p~~~l~~~l~~--~-~----~----~t~~~~VyaiGD~~~~-~~~~~A~~~g~~aa~~i~~~l~ 675 (690)
T 3k30_A 611 LECDAVVMVTARLPREELYLDLVA--R-R----D----AGEIASVRGIGDAWAP-GTIAAAVWSGRRAAEEFDAVLP 675 (690)
T ss_dssp EECSEEEEESCEEECCHHHHHHHH--H-H----H----HTSCSEEEECGGGTSC-BCHHHHHHHHHHHHHHTTCCCC
T ss_pred EECCEEEECCCCCCChHHHHHHhh--h-h----c----ccCCCCEEEEeCCCch-hhHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999998765542111 0 0 0 6789999999999764 4556699999999999988854
No 87
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.70 E-value=3.1e-18 Score=166.49 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeeccc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 127 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~ 127 (396)
.+++..++..++++.++. ++ ..+|+.|+.+.+ +|++++++++.||+||+|||. .|.+|.+. ..+...+.+.
T Consensus 55 ~~~~~~~~~~~~~~~gv~--~~-~~~v~~id~~~~--~v~~~~g~~i~~d~liiAtG~--~~~~pg~~--~~g~~~~~~~ 125 (430)
T 3h28_A 55 FEDISVPLAPLLPKFNIE--FI-NEKAESIDPDAN--TVTTQSGKKIEYDYLVIATGP--KLVFGAEG--QEENSTSICT 125 (430)
T ss_dssp GGGSEEESTTTGGGGTEE--EE-CSCEEEEETTTT--EEEETTCCEEECSEEEECCCC--EEECCSBT--HHHHSCCCSS
T ss_pred HHHHHHHHHHHHHhcCCE--EE-EEEEEEEECCCC--EEEECCCcEEECCEEEEcCCc--ccccCCCC--CcCCccCcCC
Confidence 344555556666667765 44 458899887544 677888888999999999998 67766332 1222222222
Q ss_pred CCCCCC--------CCCCeEEEEcCCCcH------HHHHHHHh----cCC----CcEEEEeccCceeecCCCCCCChhHH
Q psy2343 128 YKSPDQ--------IRNKRVLVVGAGNSG------CDIAVDAS----HHS----EKVYHSTRRGYHYYPKFIDGKPTPQW 185 (396)
Q Consensus 128 ~~~~~~--------~~~k~VvVVG~G~sa------~d~a~~l~----~~~----~~V~l~~r~~~~~~p~~~~~~~~~~~ 185 (396)
+.+... .++++++|||+|.+| +|+|..++ +.+ .+|+++.+.+.. .+....+.+
T Consensus 126 ~~~a~~~~~~~~~~~~~~~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~-~~~~l~~~~---- 200 (430)
T 3h28_A 126 AEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYL-GHFGVGGIG---- 200 (430)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSST-TCTTTTCST----
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccc-cccccCcch----
Confidence 222111 125678999998876 88886654 333 368888876521 000000000
Q ss_pred HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEec
Q psy2343 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFV 263 (396)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~ 263 (396)
.....+.+.+++..|++ ...|++++++.+.++
T Consensus 201 ----------------------------------------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~v~~~ 234 (430)
T 3h28_A 201 ----------------------------------------------ASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYE 234 (430)
T ss_dssp ----------------------------------------------THHHHHHHHHHHTTCEEECSCEEEEECSSEEEEE
T ss_pred ----------------------------------------------HHHHHHHHHHHHCCCEEEeCCEEEEEeCCeEEEE
Confidence 01112222333334554 456889988889998
Q ss_pred C----CcEecCcEEEEccCCCCCCCCCCc--ccccccCC-ccccccccccCCCCcEEEEecccCc------------Cch
Q psy2343 264 D----DTHIEVDTIIYATGYNRHFPFIDK--EKLEWKLG-IPDLFIHIAPRNLDNIFFFGFVNAA------------AGL 324 (396)
Q Consensus 264 d----G~~~~~D~VI~aTG~~~~~~~l~~--~~~~~~~~-~~~l~~~~~~~~~p~l~~iG~~~~~------------~~~ 324 (396)
+ |+++++|.||+|+|++++. ++.. ..+..+++ .+.+.+.+..+++|+||++||+... ..+
T Consensus 235 ~~~~~g~~i~~D~vv~a~G~~~~~-~l~~~~~gl~~~~G~~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~ 313 (430)
T 3h28_A 235 DLNGNTHEVPAKFTMFMPSFQGPE-VVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKT 313 (430)
T ss_dssp CTTSCEEEEECSEEEEECEEECCH-HHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCC
T ss_pred ecCCCceEEeeeEEEECCCCccch-hHhhccccCcCCCCCEEecCccccCCCCCCEEEEEeeeccCCccCCCCCCCCCch
Confidence 7 7789999999999999753 3332 23433456 6888877666699999999999753 235
Q ss_pred hhHHHHHHHHHHHHHhcccc
Q psy2343 325 GDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 325 ~~~ae~qa~~~a~~l~~~~~ 344 (396)
...|..||+.+|++|...+.
T Consensus 314 ~~~A~~~g~~aa~ni~~~l~ 333 (430)
T 3h28_A 314 GMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999887665
No 88
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.68 E-value=3.8e-17 Score=173.21 Aligned_cols=227 Identities=13% Similarity=0.080 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCC---------eEEEEE------ccCcEEEcCEEEEcccCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED---------IWEVEL------SNGKKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~---------~~~V~~------~~g~~~~~d~vvvAtG~~~~p~~ 111 (396)
..++.+++...+..+ ++. ++++++|..|..... .+.|.+ .++.++.||+||||||+ .|+.
T Consensus 180 ~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs--~p~~ 255 (965)
T 2gag_A 180 SSAWIEQVTSELAEAEETT--HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA--HERP 255 (965)
T ss_dssp HHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE--EECC
T ss_pred HHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC--ccCC
Confidence 345556655555554 665 778999988864221 122221 11235889999999999 7888
Q ss_pred CCCCC-CcccceeecccC---CC-CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHH
Q psy2343 112 PNYSG-YFSGEILHSMDY---KS-PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWM 186 (396)
Q Consensus 112 P~~~g-~~~g~~~hs~~~---~~-~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~ 186 (396)
|.+|| ...| ++++... .. .....+|+|+|||+|.+|+|+|..|++.+.+|+++.+++... +
T Consensus 256 ~~ipG~~~~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-~------------ 321 (965)
T 2gag_A 256 IVFENNDRPG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-A------------ 321 (965)
T ss_dssp CCCBTCCSTT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-H------------
T ss_pred CCCCCCCCCC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-h------------
Confidence 88998 5444 4554322 11 223568999999999999999999999988899999986310 0
Q ss_pred HhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC--C----eE
Q psy2343 187 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N----IV 260 (396)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~--~----~v 260 (396)
. .+. ++ ..|+ ++.....|.++++ + +|
T Consensus 322 --------------~-~~~-l~-------~~GV-------------------------~v~~~~~v~~i~~~~~~~v~~v 353 (965)
T 2gag_A 322 --------------A-AAQ-AV-------ADGV-------------------------QVISGSVVVDTEADENGELSAI 353 (965)
T ss_dssp --------------H-HHH-HH-------HTTC-------------------------CEEETEEEEEEEECTTSCEEEE
T ss_pred --------------h-HHH-HH-------hCCe-------------------------EEEeCCEeEEEeccCCCCEEEE
Confidence 0 000 00 0111 2333334566653 2 57
Q ss_pred EecC-------C--cEecCcEEEEccCCCCCCCCCCcccccccCCccccccccc----cCCCCcEEEEecccCcCchhhH
Q psy2343 261 HFVD-------D--THIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA----PRNLDNIFFFGFVNAAAGLGDG 327 (396)
Q Consensus 261 ~~~d-------G--~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~~p~l~~iG~~~~~~~~~~~ 327 (396)
.+.+ | +++++|.||+|+|++|+..++... ++.+.+...+. .++.|+||++||+.....+ ..
T Consensus 354 ~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l-~~ 427 (965)
T 2gag_A 354 VVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT-AS 427 (965)
T ss_dssp EEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH-HH
T ss_pred EEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCCCEEEEEecCCchhH-HH
Confidence 7765 5 568999999999999997765432 12232222221 3789999999999765444 48
Q ss_pred HHHHHHHHHHHHhccccCC
Q psy2343 328 LRLQGQFIRSYIQAFIRKS 346 (396)
Q Consensus 328 ae~qa~~~a~~l~~~~~lp 346 (396)
+..||+.+|..+.+.+...
T Consensus 428 A~~~G~~aA~~i~~~lg~~ 446 (965)
T 2gag_A 428 ALSTGAATGAAAATAAGFA 446 (965)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999998766543
No 89
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.68 E-value=7.8e-17 Score=165.09 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEE-EcCEEEEcccCCCCCCCCCCCCCcccceeecc
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK-KYDFIAVCNGAQRVARYPNYSGYFSGEILHSM 126 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~-~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~ 126 (396)
..++.+|+...++++++. ++++++|.. ..+ .||+||||||. .|+.|.++|.-...++++.
T Consensus 424 ~~~~~~~~~~~~~~~gv~--~~~~~~v~~---------------~~~~~~d~lviAtG~--~p~~~~i~G~~~~~v~~~~ 484 (671)
T 1ps9_A 424 FYETLRYYRRMIEVTGVT--LKLNHTVTA---------------DQLQAFDETILASGI--VPRTPPIDGIDHPKVLSYL 484 (671)
T ss_dssp HHHHHHHHHHHHHHHTCE--EEESCCCCS---------------SSSCCSSEEEECCCE--EECCCCCBTTTSTTEEEHH
T ss_pred HHHHHHHHHHHHHHcCCE--EEeCcEecH---------------HHhhcCCEEEEccCC--CcCCCCCCCCCCCcEeeHH
Confidence 356777888888888886 778875421 113 79999999999 8999999983224577777
Q ss_pred cCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc--CceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343 127 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR--GYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 204 (396)
Q Consensus 127 ~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~--~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 204 (396)
++.......+|+|+|||+|.+|+|+|..|++.+.+|++.... ..|-......... .+....|....
T Consensus 485 ~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~---------- 552 (671)
T 1ps9_A 485 DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAG--GLSPQGMQIPR---------- 552 (671)
T ss_dssp HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGG--GBCTTCCCCCC----------
T ss_pred HHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccc--cccccccccCC----------
Confidence 666655667999999999999999999999887666542100 0000000000000 00000000000
Q ss_pred HHHHHhcCCCCCCCCCCCCCC-CCc-ccCccCchhhhcccCCCeEec--CCcceEeCCeEEe-cCC--cEecCcEEEEcc
Q psy2343 205 QVFKLAGFDGVDYGLKKPDHP-LDA-AHPIMNSQILYHIGHGDILPK--DDIKNLNGNIVHF-VDD--THIEVDTIIYAT 277 (396)
Q Consensus 205 ~~~~~~~~~~~~~~~~~p~~~-~~~-~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~v~~-~dG--~~~~~D~VI~aT 277 (396)
.....-+..+... +.. ..+.....+.+.+....|++. ..+++++++++.+ .|| +++++|.||+||
T Consensus 553 --------~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~ 624 (671)
T 1ps9_A 553 --------SPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICA 624 (671)
T ss_dssp --------CSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECC
T ss_pred --------CCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECC
Confidence 0000000000000 000 001111122344444556654 4577888888888 688 469999999999
Q ss_pred CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHH
Q psy2343 278 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYI 339 (396)
Q Consensus 278 G~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l 339 (396)
|++++..+++. +. ...+++|++||+..... ....|..||+.+|..|
T Consensus 625 G~~p~~~l~~~--l~--------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 625 GQEPNRALAQP--LI--------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp CEEECCTTHHH--HH--------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred CccccHHHHHH--HH--------------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 99998766542 11 12368999999975432 4678999999998764
No 90
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.66 E-value=5.9e-16 Score=148.99 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=138.5
Q ss_pred cCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccc-cceeecccCCCC-------
Q psy2343 62 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS-GEILHSMDYKSP------- 131 (396)
Q Consensus 62 ~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~-g~~~hs~~~~~~------- 131 (396)
.+++ + ...+|+.|+++.+ +|++.+|.++.||+||||||+ .++.|.++| ... ....|+....+.
T Consensus 68 ~gv~--~-i~~~v~~id~~~~--~v~~~~g~~i~yd~LviAtG~--~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~ 140 (401)
T 3vrd_B 68 HGIQ--V-VHDSALGIDPDKK--LVKTAGGAEFAYDRCVVAPGI--DLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQ 140 (401)
T ss_dssp TTCE--E-ECSCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHH
T ss_pred CCCE--E-EEeEEEEEEccCc--EEEecccceeecceeeeccCC--ccccCCccCchhhcccCccceeccHHHHHHHHHH
Confidence 4553 3 4668999987654 677888988999999999999 888888888 222 122333211110
Q ss_pred -CCCCCCeEEEEcCCCc-------HHHHHHHHh----cC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343 132 -DQIRNKRVLVVGAGNS-------GCDIAVDAS----HH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197 (396)
Q Consensus 132 -~~~~~k~VvVVG~G~s-------a~d~a~~l~----~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 197 (396)
..+.....+|+|+|.. +.|++.+++ +. ..+|+++.+.+..... +
T Consensus 141 l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~------~---------------- 198 (401)
T 3vrd_B 141 LESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQ------A---------------- 198 (401)
T ss_dssp HHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTH------H----------------
T ss_pred HHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEccccccccc------c----------------
Confidence 1223344455544433 334444443 32 4678888876521100 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe----CCeEEecCCcEecCc
Q psy2343 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN----GNIVHFVDDTHIEVD 271 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~----~~~v~~~dG~~~~~D 271 (396)
.+.+.+.+... ..++...|++ ...+..++ ...|.+.||+++++|
T Consensus 199 ---~~~~~~~~~~~---------------------------~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D 248 (401)
T 3vrd_B 199 ---QFTKGWERLYG---------------------------FGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAA 248 (401)
T ss_dssp ---HHHHHHHHHSC---------------------------TTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECS
T ss_pred ---cccHHHHHHHH---------------------------HHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEee
Confidence 11121111111 1122223443 33455553 246889999999999
Q ss_pred EEEEccCCCCCCCCCCcccccccCCccccccc-cccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhccc
Q psy2343 272 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH-IAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 272 ~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~ 343 (396)
.|++++|.+++ +++....+..+.+++.+.++ +.++++||||++||+... ..+...|..||+.+|++|...+
T Consensus 249 ~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 249 VINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp EEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999876 56665566556677888877 457899999999998643 2456788999999999887554
No 91
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.66 E-value=6.4e-17 Score=172.54 Aligned_cols=243 Identities=17% Similarity=0.159 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCC-CC-Ccccceeec
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY-SG-YFSGEILHS 125 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~-~g-~~~g~~~hs 125 (396)
..++.++..++++++++. +++++.|.. ..|+++++.++.||+||||||+. .|+.+++ +| .....++++
T Consensus 237 ~~~~~~~~~~~~~~~gv~--~~~~~~v~~-------~~v~~~~~~~~~~d~vvlAtGa~-~p~~l~~~~G~~~~~gv~~a 306 (1025)
T 1gte_A 237 PYDVVNFEIELMKDLGVK--IICGKSLSE-------NEITLNTLKEEGYKAAFIGIGLP-EPKTDDIFQGLTQDQGFYTS 306 (1025)
T ss_dssp CHHHHHHHHHHHHTTTCE--EEESCCBST-------TSBCHHHHHHTTCCEEEECCCCC-EECCCGGGTTCCTTTTEEEH
T ss_pred CHHHHHHHHHHHHHCCcE--EEcccEecc-------ceEEhhhcCccCCCEEEEecCCC-CCCCCCCCCCCCCCCCEEEh
Confidence 356778888888888887 778876521 13444444446799999999983 3665543 34 211224443
Q ss_pred ccCC--------------C-CCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343 126 MDYK--------------S-PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 189 (396)
Q Consensus 126 ~~~~--------------~-~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~ 189 (396)
.++. + .....+++|+|||||.+|+|+|..+++.+ ++|+++.|++...+|.. +
T Consensus 307 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~----~-------- 374 (1025)
T 1gte_A 307 KDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAV----P-------- 374 (1025)
T ss_dssp HHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSC----H--------
T ss_pred HHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCC----H--------
Confidence 3221 1 11234679999999999999999999986 58999999864333321 0
Q ss_pred CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeE-ecCCcceEeCCe--EEecCC
Q psy2343 190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDIL-PKDDIKNLNGNI--VHFVDD 265 (396)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~-~~~~i~~i~~~~--v~~~dG 265 (396)
..... ++. .|+. ...+....+.. ..|+++ +.-.-.+.++++ +.. +|
T Consensus 375 -----------~e~~~-~~~-------~Gv~----------~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~-~g 424 (1025)
T 1gte_A 375 -----------EEVEL-AKE-------EKCE----------FLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNED-ED 424 (1025)
T ss_dssp -----------HHHHH-HHH-------TTCE----------EECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEE-EE
T ss_pred -----------HHHHH-HHH-------cCCE----------EEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccC-CC
Confidence 00000 000 0100 00000000000 011111 000000001111 111 23
Q ss_pred --cEecCcEEEEccCCCCC-CCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHh
Q psy2343 266 --THIEVDTIIYATGYNRH-FPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 340 (396)
Q Consensus 266 --~~~~~D~VI~aTG~~~~-~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~ 340 (396)
..+++|.||+|+|++++ ..++.. ..+..+ .+.+.+....+.|+.|+||++||+.........|..||+.+|..+.
T Consensus 425 ~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~ 504 (1025)
T 1gte_A 425 QIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIH 504 (1025)
T ss_dssp EEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 25899999999999864 334433 234444 3556666545678999999999998766677889999999999887
Q ss_pred cc
Q psy2343 341 AF 342 (396)
Q Consensus 341 ~~ 342 (396)
+.
T Consensus 505 ~~ 506 (1025)
T 1gte_A 505 KY 506 (1025)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 92
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.59 E-value=2e-15 Score=149.17 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=129.7
Q ss_pred eEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCC----CCCCCCCeE
Q psy2343 68 SIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKS----PDQIRNKRV 139 (396)
Q Consensus 68 i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~----~~~~~~k~V 139 (396)
++++++|.+|.++++.|.+.. ++++ .+.||+||+|||+ .|..|.++| ...| +++..++.. .....+++|
T Consensus 177 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa--~~~~~~~~g~~~~g-v~~~~~~~~~~~~~~~~~~~~v 253 (493)
T 1y56_A 177 IYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA--IDSTMLFENNDMPG-VFRRDFALEVMNVWEVAPGRKV 253 (493)
T ss_dssp EETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCE--EECCCCCTTTTSTT-EEEHHHHHHHHHTSCBCSCSEE
T ss_pred EEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCC--CccCCCCCCCCCCC-EEEcHHHHHHHHhcccCCCCEE
Confidence 678999999988777776655 3443 5889999999999 788888998 5544 444332211 123467999
Q ss_pred EEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCC
Q psy2343 140 LVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGL 219 (396)
Q Consensus 140 vVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (396)
+|||+|.+|+| ..+.+.+ |.+.
T Consensus 254 vViGgG~~gle--~~l~~~G--V~v~------------------------------------------------------ 275 (493)
T 1y56_A 254 AVTGSKADEVI--QELERWG--IDYV------------------------------------------------------ 275 (493)
T ss_dssp EEESTTHHHHH--HHHHHHT--CEEE------------------------------------------------------
T ss_pred EEECCCHHHHH--HHHHhCC--cEEE------------------------------------------------------
Confidence 99999999998 2222222 1111
Q ss_pred CCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC----CeEEecCCcEecCcEEEEccCCCCCCCCCCcccccc--
Q psy2343 220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEW-- 293 (396)
Q Consensus 220 ~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~----~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~-- 293 (396)
....|.++++ ..|.+.||+++++|.||+|+|++|+..++....++.
T Consensus 276 ----------------------------~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~ 327 (493)
T 1y56_A 276 ----------------------------HIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRF 327 (493)
T ss_dssp ----------------------------ECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEE
T ss_pred ----------------------------eCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccc
Confidence 1122333332 236678899999999999999999987776554432
Q ss_pred c-CCccc-cccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCC
Q psy2343 294 K-LGIPD-LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSK 347 (396)
Q Consensus 294 ~-~~~~~-l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~ 347 (396)
+ .+.+. +.+.+ . +.|+||++||+... ..+..+..||+.+|..+.+.+....
T Consensus 328 ~~~g~i~~vd~~~-~-s~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~~lg~~~ 380 (493)
T 1y56_A 328 RRGYYSPVLDEYH-R-IKDGIYVAGSAVSI-KPHYANYLEGKLVGAYILKEFGYDA 380 (493)
T ss_dssp ETTEEEECCCTTS-E-EETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCceeecccccc-C-cCCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 2 33344 34433 4 78999999999754 4567889999999999988765543
No 93
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.57 E-value=2.8e-16 Score=152.61 Aligned_cols=229 Identities=16% Similarity=0.164 Sum_probs=132.3
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCC-
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSP- 131 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~- 131 (396)
.++.++++.+++ + ...+|++|+++.+ +|++++|+++.||+||||||+ .+. +++|| .-. ....+...+.
T Consensus 61 ~~~~~~~~~gv~--~-i~~~v~~Id~~~~--~V~~~~g~~i~YD~LViAtG~--~~~-~~i~G~~e~--~~~~~~~~~a~ 130 (430)
T 3hyw_A 61 PLAPLLPKFNIE--F-INEKAESIDPDAN--TVTTQSGKKIEYDYLVIATGP--KLV-FGAEGQEEN--STSICTAEHAL 130 (430)
T ss_dssp ESTTTGGGGTEE--E-ECSCEEEEETTTT--EEEETTCCEEECSEEEECCCC--EEE-CCSBTHHHH--SCCCSSHHHHH
T ss_pred cHHHHHHHCCcE--E-EEeEEEEEECCCC--EEEECCCCEEECCEEEEeCCC--Ccc-CCccCcccC--cCCcccHHHHH
Confidence 344445555643 3 3568999987655 688899988999999999998 444 45777 210 0111111110
Q ss_pred ------CC-CCCCeEEEEcCCCcHH-------HHHHHHh----cC----CCcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343 132 ------DQ-IRNKRVLVVGAGNSGC-------DIAVDAS----HH----SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 189 (396)
Q Consensus 132 ------~~-~~~k~VvVVG~G~sa~-------d~a~~l~----~~----~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~ 189 (396)
.+ ..++.++|+|++ .|+ |+|..+. +. ..+|+++...+. ++.....
T Consensus 131 ~~~~~l~~~~~~~~~vv~gg~-~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~--l~~~~~~---------- 197 (430)
T 3hyw_A 131 ETQKKLQELYANPGPVVIGAI-PGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPY--LGHFGVG---------- 197 (430)
T ss_dssp HHHHHHHHHHHSCCCEEEEEC-TTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSS--TTCTTTT----------
T ss_pred HHHHHHHhhccCCceEEEeCC-CcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccch--hhhccch----------
Confidence 01 134556666655 333 3333332 22 125666665431 1100000
Q ss_pred CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecC--C
Q psy2343 190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVD--D 265 (396)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~d--G 265 (396)
... .. ...+.+.+++..|++ ...|++++++.+.+++ |
T Consensus 198 ---~~~-----~~-------------------------------~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g 238 (430)
T 3hyw_A 198 ---GIG-----AS-------------------------------KRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNG 238 (430)
T ss_dssp ---CST-----TH-------------------------------HHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTS
T ss_pred ---hhH-----HH-------------------------------HHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCC
Confidence 000 00 011112222224444 4568899988888865 3
Q ss_pred --cEecCcEEEEccCCCCCCCCCCccc--ccccC-CccccccccccCCCCcEEEEecccCc------------CchhhHH
Q psy2343 266 --THIEVDTIIYATGYNRHFPFIDKEK--LEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAA------------AGLGDGL 328 (396)
Q Consensus 266 --~~~~~D~VI~aTG~~~~~~~l~~~~--~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~------------~~~~~~a 328 (396)
.++++|.||+|+|.+++ +++.... +..+. +.+.+.+.+..+++||||++||+... ..+.+.|
T Consensus 239 ~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A 317 (430)
T 3hyw_A 239 NTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMI 317 (430)
T ss_dssp CEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHH
T ss_pred CceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHH
Confidence 35899999999999986 4443332 22233 34556666667999999999999742 1245579
Q ss_pred HHHHHHHHHHHhccccC
Q psy2343 329 RLQGQFIRSYIQAFIRK 345 (396)
Q Consensus 329 e~qa~~~a~~l~~~~~l 345 (396)
..||+.+|++|...++.
T Consensus 318 ~~qg~~~A~Ni~~~l~g 334 (430)
T 3hyw_A 318 EQMAMAVAHNIVNDIRN 334 (430)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999876653
No 94
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.46 E-value=7.4e-14 Score=118.84 Aligned_cols=160 Identities=15% Similarity=0.090 Sum_probs=100.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCC--CCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKF--IDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 215 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (396)
+|+|||+|.+|+++|..|++.+.+|+++.+.+... ++. ....| .+|..+.. . .+
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~~~~~~~~~------~~~~~~~~-~---~~------------- 58 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KGVSRVPNYP------GLLDEPSG-E---EL------------- 58 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TTCSCCCCST------TCTTCCCH-H---HH-------------
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cCchhhhccC------CCcCCCCH-H---HH-------------
Confidence 79999999999999999999999999999876321 110 00000 00000000 0 11
Q ss_pred CCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCCCcc
Q psy2343 216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 289 (396)
Q Consensus 216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~ 289 (396)
...+.+.+.+..++ .. .+++++. + .|.+.+| ++++|.||+|||.+++. +...
T Consensus 59 ------------------~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~ 116 (180)
T 2ywl_A 59 ------------------LRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL--PSLL 116 (180)
T ss_dssp ------------------HHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH--HHHH
T ss_pred ------------------HHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc--cccC
Confidence 11111112111233 33 5666653 2 3667788 89999999999999742 2222
Q ss_pred cccccCCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHHhcccc
Q psy2343 290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYIQAFIR 344 (396)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l~~~~~ 344 (396)
.++.+.+.+.+.. .+.++.|+||++||+..... .+..|..||+.+|..+.+.++
T Consensus 117 g~~~~~g~i~vd~-~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 171 (180)
T 2ywl_A 117 GLTRRGAYIDTDE-GGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDLR 171 (180)
T ss_dssp TCCEETTEECCCT-TCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCceEEeCC-CCCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHhh
Confidence 3344434444444 45778999999999987644 778899999999999987654
No 95
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.07 E-value=2.3e-10 Score=101.32 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=97.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCcee-ecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY-YPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 215 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~-~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (396)
.+|+|||+|.+|+++|..|++.+.+|+++.+..... ++.. | .++..... .+.+. .. +
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~----~------~~~~~~~~-----~~~~~----~~-d-- 61 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL----P------PKPPFPPG-----SLLER----AY-D-- 61 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS----C------CCSCCCTT-----CHHHH----HC-C--
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccC----c------cccccchh-----hHHhh----hc-c--
Confidence 479999999999999999999999999999863110 0000 0 00000000 00000 00 0
Q ss_pred CCCCCCCCCCCCcccCccCchhhhcccC-CCeEe-cCCcceEe--CC---eEEecCCcEecCcEEEEccCCCCCCCCC--
Q psy2343 216 DYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILP-KDDIKNLN--GN---IVHFVDDTHIEVDTIIYATGYNRHFPFI-- 286 (396)
Q Consensus 216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~-~~~i~~i~--~~---~v~~~dG~~~~~D~VI~aTG~~~~~~~l-- 286 (396)
..+ | .+..+...+.+.+.+ +.+++ ...++++. ++ .|.+.+|+++.+|.||+|||.......+
T Consensus 62 ~~g---~------~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G 132 (232)
T 2cul_A 62 PKD---E------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG 132 (232)
T ss_dssp TTC---C------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred CCC---C------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecC
Confidence 000 0 011122223333333 24554 34566664 22 4677889889999999999995432100
Q ss_pred -----------------Cc----cccccc---------CCccc-------cc------cccccCCCCcEEEEecccCcCc
Q psy2343 287 -----------------DK----EKLEWK---------LGIPD-------LF------IHIAPRNLDNIFFFGFVNAAAG 323 (396)
Q Consensus 287 -----------------~~----~~~~~~---------~~~~~-------l~------~~~~~~~~p~l~~iG~~~~~~~ 323 (396)
.+ ..+... .+.++ +. ..+..+++|+||++||+. ...
T Consensus 133 ~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g 211 (232)
T 2cul_A 133 GVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG 211 (232)
T ss_dssp TEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC
T ss_pred CccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc
Confidence 00 000000 00000 00 011225899999999999 666
Q ss_pred hhhHHHHHHHHHHHHHhccc
Q psy2343 324 LGDGLRLQGQFIRSYIQAFI 343 (396)
Q Consensus 324 ~~~~ae~qa~~~a~~l~~~~ 343 (396)
++..+..|++.+|..|...+
T Consensus 212 ~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 212 DYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999987654
No 96
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=98.45 E-value=1.9e-07 Score=89.41 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe----CCeEEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNGKKKKYDFIAVCNGAQRVAR 110 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~ 110 (396)
+..++.++|...+++.++. ++++++|+++..+ ++.|.|++.++ ++.+|+||+|||..+.|.
T Consensus 107 ~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p~ 171 (401)
T 2gqf_A 107 GAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSMPG 171 (401)
T ss_dssp CTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSCGG
T ss_pred CHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccCCC
Confidence 6789999999999999987 9999999999976 56799988777 689999999999976553
No 97
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.14 E-value=1.9e-06 Score=83.23 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=67.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
|+|||||+|..|+.+|..|.+.. .+|+++.+++.+... | .+.. ...+..
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~------p-------------------~l~~----v~~g~~ 53 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT------P-------------------AFPH----LAMGWR 53 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG------G-------------------GHHH----HHHTCS
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccC------c-------------------cHHH----HhcCCC
Confidence 78999999999999999998754 579999998754321 1 0000 000100
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCC
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFP 284 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~ 284 (396)
.+.. +...+.+.+...+|++ ...+++|+ .+.|++.||+++++|.+|+|||.++.++
T Consensus 54 ------~~~~--------i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~~~ 112 (430)
T 3hyw_A 54 ------KFED--------ISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp ------CGGG--------SEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECC
T ss_pred ------CHHH--------hhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCccCC
Confidence 0000 0011112223335664 45678886 4679999999999999999999875543
No 98
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.13 E-value=3.7e-07 Score=89.32 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEE--ccCcEEEcCEEEEcccCCCCCCCCCCCC---Cccc
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL--SNGKKKKYDFIAVCNGAQRVARYPNYSG---YFSG 120 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~--~~g~~~~~d~vvvAtG~~~~p~~P~~~g---~~~g 120 (396)
++.++.+.|.+.+++.++. ++++++| ++..+++.. -|.. .++ ++.+|+||+|||.+ +..+.+.. ...|
T Consensus 117 ~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~--~~~~~~~~~~~~~tG 190 (472)
T 2e5v_A 117 TGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGY--SYLYEYSSTQSTNIG 190 (472)
T ss_dssp HHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCC--GGGSSSBSSCTTCSC
T ss_pred CHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCC--cccCccccCCCCCch
Confidence 3568888888888888887 9999999 998766543 2333 234 36799999999994 33333321 2233
Q ss_pred ceeecc-----cCCCCCCCCCC-eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecC
Q psy2343 121 EILHSM-----DYKSPDQIRNK-RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK 175 (396)
Q Consensus 121 ~~~hs~-----~~~~~~~~~~k-~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~ 175 (396)
.-+... ...+.+.+... .++++|+| +++++..+...+..+ +..+.. .++++
T Consensus 191 dgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~-rf~~~ 247 (472)
T 2e5v_A 191 DGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGE-RFLFN 247 (472)
T ss_dssp HHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCC-CGGGG
T ss_pred HHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCC-CCCcc
Confidence 221111 12222222222 34566776 888887777766655 444433 34444
No 99
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=97.97 E-value=1.4e-05 Score=72.58 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+.+|..|++. +.+|+++.+.+
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~ 73 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 4799999999999999999997 88999999875
No 100
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=97.93 E-value=1.6e-05 Score=75.89 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 212 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (396)
+||||+|||+|..|+-+|..|.+.. .+|+++.+++.+..... . . .+ . .+
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----~-~-----------------~v----~---~g 51 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYM----S-N-----------------EV----I---GG 51 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTT----H-H-----------------HH----H---HT
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccC----H-H-----------------HH----h---cC
Confidence 4899999999999999999998754 47999998775432110 0 0 00 0 00
Q ss_pred CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
.. .+. .. ...+..... ..|++ ...++.|+. +.|.+.+|.++.+|.+|+|||.++..+-+
T Consensus 52 ~~------~~~------~~--~~~~~~~~~-~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i 113 (401)
T 3vrd_B 52 DR------ELA------SL--RVGYDGLRA-HGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKI 113 (401)
T ss_dssp SS------CGG------GG--EECSHHHHH-TTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred CC------CHH------HH--hhCHHHHHH-CCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccCCc
Confidence 00 000 00 000111111 23553 456777864 56889999999999999999998765433
No 101
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=97.90 E-value=9e-06 Score=78.62 Aligned_cols=108 Identities=18% Similarity=0.329 Sum_probs=67.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
++|+|||||..|+.+|..|++ .+.+|+++.+++.+... |.-.. +......
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~------~~~~~---~~~g~~~------------------ 57 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFV------PSNPW---VGVGWKE------------------ 57 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECG------GGHHH---HHHTSSC------------------
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCccc------CCccc---cccCccC------------------
Confidence 689999999999999999998 67899999998743221 10000 0000000
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFID 287 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~ 287 (396)
...+...+.+.+....|++ ...++.++. +.|.+.+|+++.+|.||+|||.++..+-++
T Consensus 58 ----------------~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ip 118 (437)
T 3sx6_A 58 ----------------RDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVP 118 (437)
T ss_dssp ----------------HHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred ----------------HHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCC
Confidence 0000011112222223443 346677764 478899999999999999999988755443
No 102
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=97.86 E-value=2.8e-05 Score=74.40 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=31.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccCce
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRGYH 171 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~~~ 171 (396)
++|+|||||.+|+.+|..|++ .+.+|+++.+++.+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~ 39 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS 39 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence 589999999999999999999 77899999998743
No 103
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=97.84 E-value=2.5e-05 Score=70.83 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999754
No 104
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=97.79 E-value=2.4e-05 Score=75.44 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=66.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhc--CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~--~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
++|+|||+|..|+.+|..|++ .+.+|+++.+++.+... |. +.. .. .+..
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~------~~-------------------~~~-~~---~g~~ 53 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT------PA-------------------FPH-LA---MGWR 53 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG------GG-------------------HHH-HH---HTCS
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC------CC-------------------cch-hc---cCcc
Confidence 689999999999999999999 67799999998743211 10 000 00 0000
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
.. ..+...+.+.+..-.|++ ...++.++. ..|.+.+|+.+.+|.+|+|||.++.+|-+
T Consensus 54 ~~--------------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~v~~~~g~~i~~d~liiAtG~~~~~pg~ 114 (430)
T 3h28_A 54 KF--------------EDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAE 114 (430)
T ss_dssp CG--------------GGSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECCSB
T ss_pred CH--------------HHHHHHHHHHHHhcCCEEEEEEEEEEECCCCEEEECCCcEEECCEEEEcCCcccccCCC
Confidence 00 000111112222224443 345666764 46888999999999999999999876633
No 105
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=97.75 E-value=2.6e-05 Score=71.55 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=30.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 47 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGET 47 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 58999999999999999999999999999986
No 106
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=97.74 E-value=0.00011 Score=69.61 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 215 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (396)
.-+|+|||+|..|+.+|..|.....+|+++.+.+..... .| .+.. .+ .+...
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~-----~~-------------------~l~~-~l---~g~~~ 60 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY-----RP-------------------RLNE-II---AKNKS 60 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC-----GG-------------------GHHH-HH---HSCCC
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc-----cC-------------------hhhH-HH---cCCCC
Confidence 347999999999999999997778899999987642100 00 0111 00 00000
Q ss_pred CCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
...+ .....++. .+-+|++ ...|++++ ...|.+.+|+++.+|.+|+|||.++..|-+
T Consensus 61 ~~~l-----------~~~~~~~~---~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i 121 (385)
T 3klj_A 61 IDDI-----------LIKKNDWY---EKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKV 121 (385)
T ss_dssp GGGT-----------BSSCHHHH---HHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred HHHc-----------cCCCHHHH---HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCC
Confidence 0000 00011111 1224554 34677776 457999999999999999999998765543
No 107
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=97.70 E-value=8.9e-05 Score=68.27 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+.+|..|++.+.+|+++.+++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 40 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLP 40 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 589999999999999999999989999999875
No 108
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=97.69 E-value=7.3e-05 Score=69.13 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 38 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP 38 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 579999999999999999999889999999875
No 109
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=97.68 E-value=8.4e-05 Score=70.94 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~ 169 (396)
+|+|+|||+|..|+-+|..|++.+. +|+++.+.+
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~ 36 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK 36 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4789999999999999999999876 899999876
No 110
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=97.60 E-value=0.00011 Score=70.32 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=64.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCc--EEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEK--VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~--V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
++|+|||+|..|+-+|..|.+.+.+ |+++.+.+..... .| .+...++.. ....
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~-----~~-------------------~l~~~~~~g-~~~~ 57 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD-----RP-------------------SLSKAVLDG-SLER 57 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC-----SG-------------------GGGTHHHHT-SSSS
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC-----Cc-------------------cccHHHhCC-CCCH
Confidence 5899999999999999999998766 9999987642110 00 000000000 0000
Q ss_pred CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCC
Q psy2343 215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFP 284 (396)
Q Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~ 284 (396)
... + ....+. ..-.|++ ...+..++. ..|.+.+|+.+.+|.+|+|||.++..+
T Consensus 58 ~~~-~-------------~~~~~~---~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 58 PPI-L-------------AEADWY---GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTM 114 (410)
T ss_dssp CCB-S-------------SCTTHH---HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCC
T ss_pred HHh-c-------------CCHHHH---HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCC
Confidence 000 0 001111 1123443 346777764 478889999999999999999886654
No 111
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=97.52 E-value=8.8e-05 Score=68.96 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+.+|..|++.+.+|+++.+++
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 36 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA 36 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999999999999875
No 112
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=97.51 E-value=0.00099 Score=66.13 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 54 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS 54 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999888999999865
No 113
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.48 E-value=0.00021 Score=68.83 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
.++|+|||+|..|+.+|..|++.+. +|+++.+.+.. |.. .+. ++..+.. +.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~--~~~---~~~------l~~~~~~----------------~~ 56 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI--PHH---LPP------LSKAYLA----------------GK 56 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC--CBC---SGG------GGTTTTT----------------TC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC--CCc---CCC------CcHHHhC----------------CC
Confidence 3689999999999999999999876 79999987531 100 000 0000000 00
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
..+ .. +.....+.+...+|++. ..|..++. ..|.+.+|+.+.+|.||+|||.++..+-+
T Consensus 57 ------~~~------~~--~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i 119 (431)
T 1q1r_A 57 ------ATA------ES--LYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPV 119 (431)
T ss_dssp ------SCS------GG--GBSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred ------CCh------HH--hcccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCC
Confidence 000 00 00000112222345543 35677763 57888899999999999999998776544
No 114
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=97.46 E-value=0.00042 Score=64.79 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 47 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMP 47 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3589999999999999999999888999999875
No 115
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=97.46 E-value=0.00028 Score=67.52 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCc--EEEEeccCceeecCCCCCCChhHHHHhhCc-cccChHHHHHHHHHHHHHhcC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEK--VYHSTRRGYHYYPKFIDGKPTPQWMLQLGN-KFSSKEETMAYIKQVFKLAGF 212 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~--V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~ 212 (396)
.++|+|||+|..|+-+|..|++.+.+ |+++.+.+.....+. + ++. .+..
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~----~-------l~~~~~~~----------------- 60 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP----P-------LSKEYLAR----------------- 60 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG----G-------GGTTTTTT-----------------
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc----c-------CCHHHHcC-----------------
Confidence 46899999999999999999998766 999998764211000 0 000 0000
Q ss_pred CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
.. .+ ..+.....+.+....|++ ...+..++. ..|.+.+|+.+.+|.+|+|||.++..+-+
T Consensus 61 ~~------~~--------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i 124 (415)
T 3lxd_A 61 EK------TF--------ERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC 124 (415)
T ss_dssp SS------CS--------GGGBSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBT
T ss_pred CC------CH--------HHhccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCC
Confidence 00 00 000000011112224554 236777764 46888999999999999999988765533
No 116
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.46 E-value=0.00031 Score=69.03 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~ 171 (396)
++|||||+|..|+.+|..|.+...+|+++.+++.+
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~ 77 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF 77 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc
Confidence 58999999999999999998877899999998754
No 117
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=97.46 E-value=0.00014 Score=70.88 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~ 170 (396)
.++|+|||+|.+|+-+|..|++. +.+|+++.+++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~ 39 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence 36899999999999999999987 789999999864
No 118
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.44 E-value=0.00012 Score=67.68 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~ 55 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM 55 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4689999999999999999999999999999854
No 119
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.43 E-value=0.00022 Score=67.07 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.|.+|+|||+|..|+.+|..|++.+ +|+++.+.+.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~ 41 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV 41 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence 4789999999999999999999888 9999998763
No 120
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.0001 Score=71.33 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+.+|..|++. ..+|+++.+.+
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~ 38 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE 38 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 46899999999999999999987 67899999876
No 121
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=97.40 E-value=0.00024 Score=65.37 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=30.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 40 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG 40 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence 57999999999999999999998999999986
No 122
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.38 E-value=0.00043 Score=66.12 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 213 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
.++|+|||+|..|+.+|..|++.+. +|+++.+.+.. |. ..+ .+.. .+.. ...
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~--~~---~~~----------~~~~-----~~~~----~~~-- 60 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER--PY---DRP----------PLSK-----DFMA----HGD-- 60 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC--CB---CSG----------GGGT-----HHHH----HCC--
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC--cc---cCC----------CCCH-----HHhC----CCc--
Confidence 4679999999999999999998765 59999987632 10 000 0000 0100 000
Q ss_pred CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343 214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI 286 (396)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l 286 (396)
.... .+. .+.+.++++ ...+..++. ..|.+.+|+.+.+|.+|+|||.++..|-+
T Consensus 61 ~~~~--------------~~~-----~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i 118 (408)
T 2gqw_A 61 AEKI--------------RLD-----CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118 (408)
T ss_dssp GGGS--------------BCC-----CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred hhhh--------------hHH-----HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCc
Confidence 0000 000 122234443 234677763 57888899999999999999998765533
No 123
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=97.37 E-value=1.9e-06 Score=79.91 Aligned_cols=74 Identities=7% Similarity=-0.048 Sum_probs=56.4
Q ss_pred EEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 94 KKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 94 ~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+.+++++|. .+..+.++| .+.+.....+..++...+.+++++|||+|.+++|.|..+...+.++++..+..
T Consensus 141 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viggg~~av~~a~~~~~~~~~v~i~~~~~ 216 (326)
T 3fpz_A 141 VVKHAALFISTV--LSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCAMDPNVIELAGY 216 (326)
T ss_dssp EESCHHHHHHHH--HHHHHTSTTEEEETTEEEEEEEEESSCSSSSCEEEEEEEEEHHHHTCTTSSSCCCCEEEEESCB
T ss_pred ecceeEEEEcch--hhhccccccceeecccccceeeccCCcccCCCEEEEEccCceeeehhhhhhhccCcEEEEeecc
Confidence 445556666776 666677888 55565555555566667789999999999999999999998888998887654
No 124
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=97.37 E-value=0.00046 Score=62.94 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=29.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|..|+-+|..+++.+.+|+++.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~ 39 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNT 39 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999999998753
No 125
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=97.35 E-value=0.00037 Score=58.19 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
....++.+++.+.+++++++ ++++ +|++++.+++.|.|++++| ++.+|.||+|+|. .|+++
T Consensus 53 ~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~--~~~~~ 113 (180)
T 2ywl_A 53 PSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHK--DPTLP 113 (180)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTT--CCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCC--CCCcc
Confidence 45789999999999999987 8899 9999998777799998888 7899999999999 56544
No 126
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=97.35 E-value=0.00042 Score=66.34 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~ 111 (396)
...++.++|.+.+++.++. ++++++|++|..+++.|.|++.+| ++.+|+||+|||.++.|..
T Consensus 130 ~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~p~~ 191 (417)
T 3v76_A 130 SAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSIPKM 191 (417)
T ss_dssp CHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSCGGG
T ss_pred CHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccCCCC
Confidence 4679999999999999987 999999999999888899999888 6899999999999775543
No 127
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=97.33 E-value=0.00027 Score=64.52 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=28.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+|+|||+|.+|+.+|..|++.+.+|+++.++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~ 33 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6999999999999999999998899998653
No 128
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=97.31 E-value=0.00054 Score=62.46 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCC-cEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSE-KVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~ 168 (396)
+|+|||+|..|+-+|..|++.+. +|+++.+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~ 34 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG 34 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 79999999999999999999888 99999885
No 129
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=97.23 E-value=0.00041 Score=65.87 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
..+|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45899999999999999999999999999998764
No 130
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=97.22 E-value=0.00063 Score=68.23 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceee
Q psy2343 47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILH 124 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~h 124 (396)
.+..+.+++...+++ .++. + ++++|+.+..+++. +.|.+.+|.++.+|+||+|||. .+..+.++|...
T Consensus 122 Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt--~s~~~~i~G~~~----- 191 (651)
T 3ces_A 122 DRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGT--FLDGKIHIGLDN----- 191 (651)
T ss_dssp CHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCST--TTCCEEECC--------
T ss_pred CHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCC--CccCccccCccc-----
Confidence 356889999999988 5775 5 68899999876554 5788888888999999999999 444444555110
Q ss_pred cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
+.+.+ +| |.+|+++|..|.+.+.+|+.+..
T Consensus 192 ---------~~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 192 ---------YSGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp -----------------------CCHHHHHHHTTTCCEEEECC
T ss_pred ---------CCCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 11223 56 88999999999999999988853
No 131
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=97.22 E-value=0.002 Score=63.85 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=30.2
Q ss_pred CeEEEEcCCCcHHHHHHHHh-cCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~-~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|+ +.+.+|+++.+.+
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~ 42 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD 42 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 47999999999999999999 8888999999864
No 132
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=97.20 E-value=0.00021 Score=65.22 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=29.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEE-Eecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYH-STRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l-~~r~ 168 (396)
++|+|||+|..|+.+|..|++.+.+|++ +.+.
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~ 37 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG 37 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 5899999999999999999998889999 8873
No 133
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=97.20 E-value=0.00042 Score=60.00 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||+|.+|.-.+..|.+.+.+|+++.+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 568999999999999999999999998999999764
No 134
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=97.20 E-value=0.0011 Score=62.39 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
...+|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 356899999999999999999999999999998753
No 135
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=97.19 E-value=0.00022 Score=70.07 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=49.6
Q ss_pred EcCEEEEcccCCCCCCCCCCCC-Ccccceeeccc----------------CCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343 95 KYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD----------------YKSPDQIRNKRVLVVGAGNSGCDIAVDASH 157 (396)
Q Consensus 95 ~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~----------------~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~ 157 (396)
.||.+++++|. .|..|.+.+ ...+ ++.... +.....-..++|+|||||.+|+.+|..|++
T Consensus 37 ~~~~l~~~~g~--~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~ 113 (497)
T 2bry_A 37 SFQGLCRALGV--ESGGGLSQYHKIKA-QLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL 113 (497)
T ss_dssp HHHHHHHHHTC--CTTCHHHHHHHHHH-TCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCCCCcEeehhhHH-HHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence 36779999998 576665544 1111 000000 111112246799999999999999999999
Q ss_pred CCCcEEEEeccCc
Q psy2343 158 HSEKVYHSTRRGY 170 (396)
Q Consensus 158 ~~~~V~l~~r~~~ 170 (396)
.+.+|+++.+.+.
T Consensus 114 ~G~~V~liEk~~~ 126 (497)
T 2bry_A 114 LGARVVLVEKRIK 126 (497)
T ss_dssp TTCEEEEEESCSS
T ss_pred CCCeEEEEEeccc
Confidence 9999999998763
No 136
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=97.13 E-value=0.0023 Score=60.63 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+.+|+++.|.+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999875
No 137
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=97.11 E-value=0.00062 Score=64.60 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=31.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+++.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4799999999999999999999999999998753
No 138
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=97.11 E-value=0.0023 Score=63.49 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|.+.+.+|+++.+.+
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~ 42 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE 42 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999888999999875
No 139
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=97.08 E-value=0.0025 Score=58.06 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=29.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|+.+|..|++.+.+|+++.+.
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~ 38 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERG 38 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 6999999999999999999999999999875
No 140
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=97.08 E-value=0.00083 Score=61.25 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=29.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|..|+.+|..+++.+.+|+++.+..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~ 37 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM 37 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 69999999999999999999999999998753
No 141
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=97.03 E-value=0.00088 Score=66.75 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~ 170 (396)
++|+|||+|..|+-+|..|++. ..+|+++.+.+.
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~ 37 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY 37 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 5899999999999999999987 678999998864
No 142
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.02 E-value=0.001 Score=64.60 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=30.0
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|..|+-+|..|++.+.+|+++.+++
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~ 37 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG 37 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence 79999999999999999999999999999765
No 143
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=97.00 E-value=0.002 Score=62.12 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+. +|+++.+++
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~ 41 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 41 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence 4689999999999999999999988 999999874
No 144
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=96.98 E-value=0.00097 Score=65.79 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
..+|+|||||..|+.+|..|++.+.+|+++.++
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~ 244 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER 244 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence 457999999999999999999998899998753
No 145
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=96.97 E-value=0.0017 Score=62.66 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p 109 (396)
....+.+.|.+.+++.++. |+++++|+++..+++. |.|++.+|+++.+|.||+|||.++.|
T Consensus 132 ~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~~ 193 (447)
T 2i0z_A 132 KAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVP 193 (447)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSG
T ss_pred CHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcCC
Confidence 4688999999999998987 9999999999987666 89999888778999999999997644
No 146
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=96.97 E-value=0.0013 Score=60.48 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=29.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
.+|+|||+|..|+-+|..|++.+.+|+++.+
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~ 39 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEG 39 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 5799999999999999999999889999987
No 147
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=96.97 E-value=0.0022 Score=62.24 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhc---CCCc---EEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH---HSEK---VYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~---~~~~---V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++ .+.+ |+++.+++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~ 41 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQA 41 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSS
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC
Confidence 689999999999999999998 8888 99999875
No 148
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=96.95 E-value=0.0018 Score=62.12 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCc---EEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNT---EVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t---~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
....+.+.|.+.+++.|+. |++++ +|++|..+++++. |++.+|+++.+|.||+|||.++.
T Consensus 159 ~~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 159 HARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred cHHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 3468999999999999987 99999 9999999888888 99998977999999999999753
No 149
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=96.92 E-value=0.0024 Score=58.94 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.++|+|||+|..|+-+|..|++.+.+|+++.+.
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 46 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT 46 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 468999999999999999999998899999864
No 150
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=96.92 E-value=0.0022 Score=65.36 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++.|+. |+++++|+++..++++|.|++.+|.++.+|.||+|||.++
T Consensus 415 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 415 CPAELTRNVLELAQQQGLQ--IYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence 4578899999999999987 9999999999999888999998877899999999999964
No 151
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=96.89 E-value=0.0017 Score=60.75 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
...+.+.|.+.+++.++. ++++++|++|+.+++.|.|++.+|+ +.+|.||+|+|.++....+.
T Consensus 148 ~~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~~~ 210 (372)
T 2uzz_A 148 SELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWVKDLLPE 210 (372)
T ss_dssp HHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGGGGTSTT
T ss_pred HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccHHhhccc
Confidence 458889999999998887 8899999999988777999888775 89999999999976443333
No 152
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=96.87 E-value=0.0055 Score=57.10 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+|+|||+|.+|+.+|..|++.+. +|+++.+++
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~ 38 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 479999999999999999999887 899999875
No 153
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=96.86 E-value=0.00094 Score=64.77 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+|+|||+|..|+.+|..+++.+.+|+++.+.
T Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 37 (458)
T 1lvl_A 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (458)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence 57999999999999999999988999999983
No 154
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=96.84 E-value=0.0018 Score=64.74 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceee
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILH 124 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~h 124 (396)
.+..+.++|.+.++.+ ++. + ++++|+.+..+++. +.|.+.+|.++.+|+||+|||. .++.+.++|. ...
T Consensus 121 Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~--~s~~~~~~G~----~~~ 191 (637)
T 2zxi_A 121 DKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGT--FLNGVIYIGD----KMI 191 (637)
T ss_dssp CHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTT--CBTCEEEETT----EEE
T ss_pred CHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCC--CccCceeccc----eec
Confidence 4578999999999884 775 5 68899999876554 4588888888999999999999 4554555551 111
Q ss_pred cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
. +.+ +| +.+|.+++..|.+.+.++..+.+
T Consensus 192 ~----------~Gr---~G-~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 192 P----------GGR---LG-EPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp E----------CSB---TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred C----------CCC---CC-chhHHHHHHHHHhcCCceEEecC
Confidence 1 122 34 67889999999999888776654
No 155
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=96.81 E-value=0.0067 Score=55.68 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~ 35 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence 479999999999999999999999999999875
No 156
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=96.79 E-value=0.001 Score=63.29 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+..+|+|||+|.+|+-+|..|++.+.+|+++.|.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 44589999999999999999999999999999976
No 157
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=96.77 E-value=0.00028 Score=68.39 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.+++|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~ 155 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD 155 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 357899999999999999999999888999999875
No 158
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=96.77 E-value=0.0083 Score=59.40 Aligned_cols=33 Identities=33% Similarity=0.273 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 49 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 49 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999988999999875
No 159
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=96.77 E-value=0.0013 Score=61.55 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++.|+. |+++++|++|..++++|.|++.+| ++.+|+||+|+|.++
T Consensus 152 ~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 152 DTDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred CHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence 4578889999999999987 899999999999888899998877 689999999999864
No 160
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=96.76 E-value=0.00055 Score=65.54 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~ 60 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999875
No 161
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=96.74 E-value=0.002 Score=64.55 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~ 170 (396)
..++|+|||+|..|+-+|..|++. +.+|+++.+++.
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~ 72 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 457999999999999999999987 789999999864
No 162
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=96.74 E-value=0.0011 Score=65.56 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 4689999999999999999999999999999875
No 163
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=96.72 E-value=0.0042 Score=56.75 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=29.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 48 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKA 48 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 57999999999999999999998999999984
No 164
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=96.70 E-value=0.0016 Score=59.45 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=29.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
++|+|||+|..|+-+|..|++.+.+|+++.+.
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 37 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGM 37 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence 57999999999999999999998899999853
No 165
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=96.68 E-value=0.00088 Score=64.93 Aligned_cols=34 Identities=18% Similarity=0.030 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhc-C------CCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASH-H------SEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~-~------~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+.+|..|++ . ..+|+++.+.+
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~ 43 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 43 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCC
Confidence 4689999999999999999998 6 78899999875
No 166
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=96.67 E-value=0.0027 Score=59.07 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccC--cEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g--~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++.|+. ++++++|+++..++++ |.|++.+| .++.+|.||+|+|.++
T Consensus 148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred CHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence 4578899999999999987 9999999999987554 99998887 3689999999999965
No 167
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=96.67 E-value=0.0023 Score=60.59 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeE--EEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW--EVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~--~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.+.|.+.+++. ++. ++++++|++++.++++| .|++.+|+++.+|.||.|+|.++
T Consensus 104 ~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 104 MPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS 166 (399)
T ss_dssp CCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred ccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence 57889999999999887 776 89999999999987788 89998888899999999999965
No 168
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=96.63 E-value=0.0017 Score=63.32 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|..|+-+|..|++.+.+|+++.+..
T Consensus 21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~ 53 (478)
T 3dk9_A 21 YDYLVIGGGSGGLASARRAAELGARAAVVESHK 53 (478)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 579999999999999999999999999999753
No 169
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=96.62 E-value=0.0031 Score=64.46 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++.|+. |+++++|+++..++++|.|++.+|. ++.+|.||+|||.++
T Consensus 410 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 410 CPSDLTHALMMLAQQNGMT--CHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence 4578889999999999987 9999999999998778999998876 689999999999974
No 170
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=96.59 E-value=0.0042 Score=54.13 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+.++.++|.+.++++ ++. ++ +++|++|..+++. +.|.+.+|+++.+|.||+|||.++
T Consensus 66 ~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s 125 (232)
T 2cul_A 66 RVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 125 (232)
T ss_dssp CHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred CHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 5778999999999987 765 55 6799999887655 568888887799999999999954
No 171
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=96.53 E-value=0.0034 Score=59.36 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=30.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
+|+|||+|.+|+=+|..|++.+-+|+++.|.+.
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 799999999999999999999999999998753
No 172
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=96.51 E-value=0.0037 Score=60.15 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=28.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~ 169 (396)
||+|||+|..|..+|..|++.+ .+|+++.+.+
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~ 35 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR 35 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 6999999999999999998865 4699999875
No 173
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=96.49 E-value=0.0018 Score=60.04 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
|.....+..+++.++++.+.. |+++++|++|++++++|+|++.+|+++.||+||+|+..
T Consensus 105 ~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 105 FVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV 163 (342)
T ss_dssp EECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred eecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence 333445566777777777765 99999999999988889999988877899999999986
No 174
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=96.49 E-value=0.0059 Score=59.05 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=54.1
Q ss_pred cCCCCceEeCcEEEEEEEeCCeEEEEEc---cCcE--EEcCEEEEcccCCCCCC--CCCCCC--CcccceeecccCCCCC
Q psy2343 62 FDVYNHSIFNTEVINLEQYEDIWEVELS---NGKK--KKYDFIAVCNGAQRVAR--YPNYSG--YFSGEILHSMDYKSPD 132 (396)
Q Consensus 62 ~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~--~~~d~vvvAtG~~~~p~--~P~~~g--~~~g~~~hs~~~~~~~ 132 (396)
.++. ++++++|++|+.+++.|.|++. +|+. +.+|.||+|||. .|+ .+-+.+ ...|.+....+++-..
T Consensus 329 ~~v~--i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~--~p~~~~~~l~~l~~~~g~i~v~~~~~~~~ 404 (463)
T 3s5w_A 329 PRHA--FRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGY--ERQLHRQLLEPLAEYLGDHEIGRDYRLQT 404 (463)
T ss_dssp CCSE--EETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCE--ECCC-CTTTGGGGGGBC--CCCTTSBCCB
T ss_pred CCeE--EEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCC--CCCCccchhHHHHHHhCCcccCccccccc
Confidence 3554 8899999999998889999987 5653 889999999999 666 333343 1115555555554332
Q ss_pred -CCCCCeEEEEcCCC
Q psy2343 133 -QIRNKRVLVVGAGN 146 (396)
Q Consensus 133 -~~~~k~VvVVG~G~ 146 (396)
.-...+|-++|...
T Consensus 405 ~~~~~~~Ifa~G~~~ 419 (463)
T 3s5w_A 405 DERCKVAIYAQGFSQ 419 (463)
T ss_dssp CTTBCSEEEESSCCH
T ss_pred CCCCCCeEEEcCCCc
Confidence 11245788888633
No 175
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0053 Score=57.61 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.....+.+.|.+.+++.|+. ++++++|+++..+++.|. |++.+| ++.+|.||+|+|.++
T Consensus 146 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 146 ADPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred ECHHHHHHHHHHHHHHCCCE--EECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 34678899999999999987 899999999998878888 888777 689999999999864
No 176
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=96.39 E-value=0.00053 Score=73.24 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+++|+|||+|..|+.+|..|++.+. +|+++.+.+
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~ 221 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE 221 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 37899999999999999999999987 799999864
No 177
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=96.38 E-value=0.006 Score=57.90 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++..+.++|.+.+.. . .|+++++|++++.++++|+|++.+|+++.+|.||.|+|.++
T Consensus 124 i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 181 (407)
T 3rp8_A 124 VSRAELQREMLDYWGR--D--SVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS 181 (407)
T ss_dssp EEHHHHHHHHHHHHCG--G--GEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred EEHHHHHHHHHHhCCc--C--EEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence 4678999999999876 3 39999999999999889999999998899999999999965
No 178
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=96.36 E-value=0.0083 Score=59.25 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC----eEEEEEccC---cEEEcCEEEEcccCCC
Q psy2343 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELSNG---KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~----~~~V~~~~g---~~~~~d~vvvAtG~~~ 107 (396)
..++..+.++|.+.+++.++. |+++++|++++.+++ +++|++.++ .++.+|+||.|+|.++
T Consensus 116 ~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 116 MLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp CCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred ccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence 356889999999999998877 999999999999877 899988776 5689999999999976
No 179
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=96.34 E-value=0.00098 Score=64.65 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+.+|..|++.+ .+|+++.+.+
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~ 41 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL 41 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 468999999999999999999876 7899999875
No 180
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=96.34 E-value=0.0092 Score=58.43 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc---EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~---~~~~d~vvvAtG~~~ 107 (396)
.++.++.+.|.+.+...++. |+++++|++++.+++.++|++.++. ++.+|+||.|.|.++
T Consensus 103 i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 103 VPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred cCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 35789999999999998876 9999999999998888999887764 689999999999976
No 181
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=96.34 E-value=0.0037 Score=62.70 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||||..|+.+|..+++.+.+|.++.+.+
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 61 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI 61 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence 479999999999999999999999999999863
No 182
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=96.31 E-value=0.0073 Score=59.67 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..++.+.|.+.++..++. |+++++|++|..+++ .+.|++.+|+++.+|.||+|+|..+
T Consensus 219 ~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 219 LVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred HHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 367889999999999987 999999999998755 4668888898899999999999954
No 183
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=96.30 E-value=0.004 Score=58.42 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....++.+.|.+.+++.|+. ++++++|++|..+++.|.|++.+| ++.+|.||+|+|.++
T Consensus 161 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 161 VEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS 219 (382)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence 45688999999999998886 899999999998877888888777 689999999999964
No 184
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=96.30 E-value=0.00072 Score=64.39 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..+++.+.+|+++.+.+
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~ 37 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 369999999999999999999999999999875
No 185
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=96.23 E-value=0.0077 Score=55.64 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=29.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++ .+.+|+++.+++
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 379999999999999999999 788999999864
No 186
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=96.23 E-value=0.0085 Score=56.44 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~ 111 (396)
..++.+++.+.+++.++. ++++++|++|+.+++.+.|++.+|+++.+|.||+|+|. .|+.
T Consensus 186 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~--~p~~ 245 (384)
T 2v3a_A 186 HPAAAKAVQAGLEGLGVR--FHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGL--RPRT 245 (384)
T ss_dssp CHHHHHHHHHHHHTTTCE--EEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EECC
T ss_pred CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCC--CcCH
Confidence 467889999999998987 99999999999887788898888888999999999998 6664
No 187
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=96.20 E-value=0.0059 Score=57.78 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
.++.++.++|.+.+.. . .|+++++|++|+.++++|+|++.+|+++.+|.||.|+|.++.
T Consensus 125 i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 125 INRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp ECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred ECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 4677888888876643 3 489999999999987889999998888999999999999663
No 188
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=96.19 E-value=0.01 Score=58.10 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc---EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~---~~~~d~vvvAtG~~~ 107 (396)
.++..+.+.|.+.+.+.++. |+++++|++++.+++.++|++.++. ++.+|+||.|.|.++
T Consensus 104 i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 104 VPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred cCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 35789999999999998876 9999999999998888999887764 689999999999976
No 189
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=96.18 E-value=0.0089 Score=57.71 Aligned_cols=62 Identities=16% Similarity=0.000 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+.+++.+++ ++++++|++|+.+++.+.|++++++++.+|.||+|+|. .|+.+.
T Consensus 207 ~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~--~p~~~~ 268 (455)
T 2yqu_A 207 DLEVSRAAERVFKKQGLT--IRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGR--RPYTEG 268 (455)
T ss_dssp CHHHHHHHHHHHHHHTCE--EECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EECCTT
T ss_pred CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCC--CcCCCC
Confidence 367888888888888987 99999999999887778888878888999999999999 676643
No 190
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=96.16 E-value=0.011 Score=55.80 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
...+.+.|.+.+++.++. ++++++|+++..+++.|.|++.++ ++.+|.||+|+|.+
T Consensus 152 ~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 152 VRGTLAALFTLAQAAGAT--LRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHHTTCE--EEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCE--EECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence 457788888888888887 999999999998878898887666 58999999999986
No 191
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=96.15 E-value=0.0085 Score=56.26 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.++|.+.+...++. ++++++|++++. ++ .|++.+|+++.+|.||.|+|.++
T Consensus 104 ~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 104 MTRSHLHDALVNRARALGVD--ISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp EEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTC
T ss_pred ECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccH
Confidence 46789999999999998877 999999999987 44 88888888899999999999954
No 192
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=96.13 E-value=0.0087 Score=56.16 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++.|+. ++++++|++++.++++|.|++.++ ++.+|.||+|+|.++
T Consensus 148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 205 (389)
T 2gf3_A 148 FSENCIRAYRELAEARGAK--VLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN 205 (389)
T ss_dssp EHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred eHHHHHHHHHHHHHHCCCE--EEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence 3478889999999999987 899999999998877798888766 589999999999854
No 193
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=96.11 E-value=0.013 Score=55.30 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~ 108 (396)
.+...+.++|.+.+ -++. |+++++|++|+.++++|+|++.+|+++.+|.||.|+|.++.
T Consensus 96 ~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 96 TSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred cCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 45677888887775 2554 99999999999988889999999988999999999999663
No 194
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=96.09 E-value=0.0082 Score=60.12 Aligned_cols=99 Identities=9% Similarity=0.026 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceee
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILH 124 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~h 124 (396)
.+..+.+++.+.++++ ++. + ++++|+.+..+++... |.+.+|.++.+|+||+|||.+ ++.+.+.| ....
T Consensus 115 Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~--s~~~i~~G----~~~~ 185 (641)
T 3cp8_A 115 DKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF--LNGLIHIG----MDHF 185 (641)
T ss_dssp CHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC--BTCEEEET----TEEE
T ss_pred CHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC--CCccceee----eeee
Confidence 4568899999999885 765 5 5679999888777665 888888889999999999994 33222222 1100
Q ss_pred cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
.+.++ +| +.+|++++..|.+.+.+|..+..
T Consensus 186 ----------~~g~~--vG-~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 186 ----------PGGRS--TA-EPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp ----------ECSSS--TT-SCCBCSHHHHHHHTTCCEEEEEE
T ss_pred ----------ccccc--cC-CchhhhhHHHHHhCCceEEeecC
Confidence 11122 14 67889999999988888866543
No 195
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=96.08 E-value=0.0078 Score=58.00 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999989999999875
No 196
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=96.08 E-value=0.0034 Score=64.10 Aligned_cols=35 Identities=34% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~ 424 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR 424 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34789999999999999999999999999999875
No 197
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=96.07 E-value=0.012 Score=55.40 Aligned_cols=60 Identities=7% Similarity=0.039 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc---cCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS---NGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~---~g~~~~~d~vvvAtG~~~ 107 (396)
..+..+.++|.+.+++.|+. ++++++|+++..+++.+. |++. ++.++.+|.||.|+|.++
T Consensus 99 ~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 99 LERDKFDKHLAALAAKAGAD--VWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp ECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred EeHHHHHHHHHHHHHhCCCE--EEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 46789999999999998987 999999999999888887 7773 455789999999999865
No 198
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=96.03 E-value=0.016 Score=55.00 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE--EEccCc--EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV--ELSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V--~~~~g~--~~~~d~vvvAtG~~~ 107 (396)
..+..+.+.|.+.+++.|+. |+++++|++|+.+++.+.+ .+.+|+ ++.+|.||.|+|.++
T Consensus 103 ~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 103 VPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp CCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 56889999999999998987 9999999999988776654 446777 689999999999854
No 199
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=96.02 E-value=0.012 Score=57.78 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||+|..|.-+|..|++.+.+|+++.+.+
T Consensus 33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~ 65 (519)
T 3qfa_A 33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT 65 (519)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 489999999999999999999999999999753
No 200
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=96.01 E-value=0.0089 Score=59.53 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE--ccC-cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG-KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~--~~g-~~~~~d~vvvAtG~~~ 107 (396)
.+...+.+.|.+.++..++. |+++++|++++.+++.++|++ .+| +++.+|+||.|.|.++
T Consensus 145 i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 145 VPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp CCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred eCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 57889999999999988876 899999999999888888888 567 6799999999999976
No 201
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=95.97 E-value=0.012 Score=55.35 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 35 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999999999876
No 202
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=95.96 E-value=0.0055 Score=58.55 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 56 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 56 ~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
+..++..+ .|+++++|++|+.++++++|++.+|+++++|+||+|+|.
T Consensus 211 ~~~~~~~g---~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~ 257 (431)
T 3k7m_X 211 DAMSQEIP---EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM 257 (431)
T ss_dssp HHHHTTCS---CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred HHHHhhCC---ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence 33344444 499999999999887789999988887999999999994
No 203
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=95.91 E-value=0.01 Score=57.88 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 49 SMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.+-|.+.+...+ +. |+++++|++|+..++++.|++.+|+++.+|+||+|+|...
T Consensus 255 ~~l~~~l~~~l~~~g~~~--i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLG--YVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHHHHHHHHHTTTCEE--EESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred HHHHHHHHHHhhhcCceE--EEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence 345555555555444 44 8999999999988778999998887899999999999843
No 204
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=95.90 E-value=0.0066 Score=60.86 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
..+|+|||+|..|+-+|..|++.+.+|+++.+
T Consensus 107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~ 138 (598)
T 2x8g_A 107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY 138 (598)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred cccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence 45899999999999999999999999999986
No 205
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=95.89 E-value=0.0045 Score=63.03 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|..|+.+|..|++.+.+|+++.+++
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 406 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 406 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4789999999999999999999999999999875
No 206
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=95.88 E-value=0.0032 Score=64.71 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~ 422 (729)
T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 422 (729)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35789999999999999999999999999999875
No 207
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=95.82 E-value=0.014 Score=56.91 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+.+++.|+. ++++++|++|+.+++++.|++.+|+++.+|.||+|+|. .|+...
T Consensus 231 ~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~--~p~~~~ 292 (484)
T 3o0h_A 231 DYDLRQLLNDAMVAKGIS--IIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR--VPNTTG 292 (484)
T ss_dssp CHHHHHHHHHHHHHHTCE--EESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE--EECCTT
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC--CcCCCC
Confidence 357888888889888987 99999999999887778899989988999999999998 676553
No 208
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=95.79 E-value=0.019 Score=55.53 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.++. ++++++|++|+.++++..|++.+|+ ++.+|.||+|+|. .|+..
T Consensus 206 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~--~p~~~ 267 (463)
T 2r9z_A 206 DPLLSATLAENMHAQGIE--THLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR--APNTR 267 (463)
T ss_dssp CHHHHHHHHHHHHHTTCE--EESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE--EESCT
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC--CcCCC
Confidence 357888888999999987 9999999999987666888888888 7999999999999 77764
No 209
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=95.79 E-value=0.015 Score=56.91 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.|++ ++++++|++|+.++++..|++.+|+++.+|.||+|+|. .|+..
T Consensus 222 d~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~--~p~~~ 282 (499)
T 1xdi_A 222 DADAALVLEESFAERGVR--LFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS--VPNTS 282 (499)
T ss_dssp SHHHHHHHHHHHHHTTCE--EETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE--EECCS
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC--CcCCC
Confidence 357888999999999988 99999999999876667888878888999999999999 77754
No 210
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=95.76 E-value=0.021 Score=55.27 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-c--Cc--EEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-N--GK--KKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~--g~--~~~~d~vvvAtG~~~~p~~P~ 113 (396)
.+++.+++.+.+++.++. ++++++|++|+.+++.+.|++. + |+ ++.+|.||+|+|. .|+.+.
T Consensus 209 ~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~--~p~~~~ 275 (464)
T 2eq6_A 209 DPETAALLRRALEKEGIR--VRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR--KPRTEG 275 (464)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE--EESCTT
T ss_pred CHHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc--ccCCCC
Confidence 467889999999999988 9999999999987777778775 5 76 7899999999998 777654
No 211
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=95.76 E-value=0.021 Score=53.72 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEE-ccCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVEL-SNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~ 108 (396)
++.++.+.|.+.+...++. |+++++|++++.+ ++.+.|++ .+|+ ++.+|.||.|+|.++.
T Consensus 101 ~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 101 GQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI 164 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred chHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 5678888898888888876 9999999999886 45688887 6776 6899999999999764
No 212
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=95.72 E-value=0.016 Score=57.01 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe----EEEEEccCc-EEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI----WEVELSNGK-KKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~----~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.|+. ++++++|++|+.++++ +.|++++|+ ++.+|.||+|+|. .|+..
T Consensus 254 ~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~--~p~~~ 319 (523)
T 1mo9_A 254 DNETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE--QPRSA 319 (523)
T ss_dssp SHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC--EECCH
T ss_pred cHHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC--ccCCc
Confidence 468889999999999988 9999999999986444 788888887 7899999999999 67653
No 213
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=95.71 E-value=0.0084 Score=58.66 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEE--c-cC--cEEEcCEEEEcccCCCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVEL--S-NG--KKKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~--~-~g--~~~~~d~vvvAtG~~~~p 109 (396)
.+..++.++|.+.+++.++. ++++++|+++..+ ++.|.|++ . +| .++.+|+||+|+|..+.+
T Consensus 163 ~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 163 ISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp EEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred CCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 34689999999999998887 9999999999874 35788887 3 55 358999999999995533
No 214
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=95.70 E-value=0.0093 Score=54.73 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEE-EcCEEEEcccCCC
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK-KYDFIAVCNGAQR 107 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~-~~d~vvvAtG~~~ 107 (396)
.+...++.+++ ++. |+++++|++|++++++|+|++.+|+.. .+|+||+|+|..+
T Consensus 108 ~~~~l~~~l~~--g~~--i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~ 162 (336)
T 1yvv_A 108 GMSAITRAMRG--DMP--VSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQ 162 (336)
T ss_dssp CTHHHHHHHHT--TCC--EECSCCEEEEEECSSCEEEEETTSCEEEEESEEEECSCHHH
T ss_pred cHHHHHHHHHc--cCc--EEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEEcCCHHH
Confidence 34444444444 665 999999999999888899999888765 4999999999854
No 215
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=95.68 E-value=0.031 Score=53.81 Aligned_cols=60 Identities=12% Similarity=-0.042 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc---cCc--EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS---NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~---~g~--~~~~d~vvvAtG~~~ 107 (396)
.++.++.+.|.+.+.+.++. ++++++|+++..+++.+. |++. +|+ ++.+|.||.|+|.++
T Consensus 97 i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 97 LNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred EcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 46789999999999988887 999999999998776654 5553 565 689999999999965
No 216
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=95.65 E-value=0.022 Score=55.50 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~ 106 (396)
..+.+-|.+.++..|.+ |+++++|++|..++++++ |++++|+++.+|+||++++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~--I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGE--VVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCc--eeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 57888899999999987 999999999999988877 888999999999999998873
No 217
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=95.64 E-value=0.026 Score=54.32 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+.+++.|+. ++++++|++|+..+++..|+++++ ++.+|.||+|+|. .|+..-
T Consensus 188 d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~--~p~~~~ 248 (452)
T 3oc4_A 188 DKEMVAEVQKSLEKQAVI--FHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL--HPQLAY 248 (452)
T ss_dssp CHHHHHHHHHHHHTTTEE--EEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC--BCCCSS
T ss_pred CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC--CCChHH
Confidence 368889999999999987 899999999997766677888777 7899999999998 777653
No 218
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=95.62 E-value=0.019 Score=54.08 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.....+.+.|.+.+++.++. ++++++|+++..+++ .|.|++.+| ++.+|.||+|+|.++
T Consensus 171 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 171 AKHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 34568999999999998887 999999999998744 478888877 589999999999854
No 219
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=95.57 E-value=0.022 Score=54.87 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+.+++.+++ ++++++|++|+.++ +.+.|++.+|+++.+|.||+|+|. .|+..
T Consensus 208 ~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~--~p~~~ 268 (450)
T 1ges_A 208 PMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR--EPAND 268 (450)
T ss_dssp HHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EESCT
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC--CcCCC
Confidence 57888999999999987 99999999999864 347888888888999999999999 77765
No 220
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=95.55 E-value=0.029 Score=55.56 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+.++.++|.+.++.. |+. ++++ +|++|..++++ +.|++.+|+++.+|.||+|+|..+
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S 252 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG 252 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence 46789999999999998 987 8899 99999886443 667788888899999999999854
No 221
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=95.54 E-value=0.034 Score=54.51 Aligned_cols=60 Identities=17% Similarity=0.101 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe---EEEEEccCc--EEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELSNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~---~~V~~~~g~--~~~~d~vvvAtG~~~ 107 (396)
.++..+.++|.+.+.+.++. |+++++|++|..+++. +++...+|+ ++.+|.||.|+|.++
T Consensus 108 v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 108 VERARFDDMLLRNSERKGVD--VRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred ecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence 56889999999999998887 9999999999988664 344445574 689999999999965
No 222
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=95.54 E-value=0.029 Score=53.24 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+.+-|.+.+++.|.+ |+++++|++|..++++|+ |+++ |+++.+|.||+|+|...
T Consensus 196 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~ 252 (425)
T 3ka7_A 196 KGIIDALETVISANGGK--IHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAA 252 (425)
T ss_dssp HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHH
T ss_pred HHHHHHHHHHHHHcCCE--EEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHH
Confidence 45777778888888877 999999999999888887 6664 77799999999999853
No 223
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=95.50 E-value=0.025 Score=55.23 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+.+++.|+. ++++++|++|+.+++...|++.+|+++.+|.||+|+|. .|+..
T Consensus 226 ~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~--~pn~~ 285 (493)
T 1m6i_A 226 EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL--EPNVE 285 (493)
T ss_dssp HHHHHHHHHHHHTTTCE--EECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE--EECCT
T ss_pred HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC--CccHH
Confidence 57888889999999987 99999999998777777888888988999999999999 67653
No 224
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=95.47 E-value=0.035 Score=54.32 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+..+.+.|.+.+...|+. ++++ +|++|..++++ +.|++.+|+++.+|.||.|+|.++
T Consensus 170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence 46789999999999998886 8899 99999986443 678888887899999999999965
No 225
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=95.46 E-value=0.016 Score=55.96 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||+|.+|.-.+..|.+.+.+|+++...
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 467999999999999999999999999999999764
No 226
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=95.42 E-value=0.032 Score=52.91 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHH-cC-CCCceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEcCEEEEcccCCCC
Q psy2343 46 PNHSMMLDYLRSYAKK-FD-VYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQRV 108 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~-~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~ 108 (396)
.++.++.++|.+.+.. .+ +. |+++++|++++. +++++|++.+ | .++.+|.||.|+|.++.
T Consensus 104 i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~ 170 (410)
T 3c96_A 104 IHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSA 170 (410)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred eeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccch
Confidence 4678999999998876 45 34 999999999998 6778888765 7 46899999999999763
No 227
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=95.38 E-value=0.031 Score=55.30 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g--~~~~~d~vvvAtG~~~ 107 (396)
.++..+.++|.+.+++. |+++++|++++.++++++|++.+ | .++.+|+||.|+|.++
T Consensus 135 i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 135 CPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASS 196 (549)
T ss_dssp CCHHHHHHHHHHHHGGG-----EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred cCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence 46788999999998875 89999999999988888888765 6 3589999999999976
No 228
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=95.37 E-value=0.027 Score=54.94 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+.+++.|+. ++++++|++|+.++ +.+.|++.+|+++.+|.||+|+|. .|+..
T Consensus 231 ~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~--~p~~~ 291 (490)
T 1fec_A 231 SELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR--VPRSQ 291 (490)
T ss_dssp HHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EESCT
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC--CcCcc
Confidence 57888899999999987 99999999999864 458888888888999999999999 77764
No 229
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=95.30 E-value=0.038 Score=54.54 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC--eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~--~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.++.++.++|.+.++..|+. ++++ +|++|..+++ .+.|++.+|+++.+|.||.|+|.++
T Consensus 162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s 222 (538)
T 2aqj_A 162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG 222 (538)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence 35689999999999998886 8888 8999988643 3678888887799999999999965
No 230
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=95.28 E-value=0.041 Score=54.64 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeE-EEEE--ccCc--EEEcCEEEEcccCCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVEL--SNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~-~V~~--~~g~--~~~~d~vvvAtG~~~~ 108 (396)
++.++.+.|.+.+++.++. |+++++|+++..++ ++. -|.+ .+|+ ++.+|.||+|||.++.
T Consensus 248 ~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 248 SGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp HHHHHHHHHHHHHHHTTCC--EECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 4788999999999999987 99999999998875 542 2444 3665 5789999999999653
No 231
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=95.27 E-value=0.034 Score=53.58 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.|+. ++++++|++|+.+++...|++. +++++.+|.||+|+|. .|+.+
T Consensus 210 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 273 (455)
T 1ebd_A 210 EKQMAAIIKKRLKKKGVE--VVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR--RPNTD 273 (455)
T ss_dssp CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE--EESCS
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC--CcccC
Confidence 467888999999999987 9999999999987766777664 4556899999999999 77754
No 232
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=95.25 E-value=0.032 Score=54.47 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.++.+++.+.+++.|+. ++++++|++|+.++ +...|++.+|+++.+|.||+|+|. .|+..
T Consensus 235 ~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~--~p~~~ 295 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIE--IMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR--IPRTN 295 (495)
T ss_dssp HHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EECCG
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC--ccccc
Confidence 57888899999999988 99999999998864 457888888888999999999998 77754
No 233
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=95.18 E-value=0.05 Score=53.16 Aligned_cols=61 Identities=16% Similarity=0.361 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcE-EEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKK-KKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~-~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+..++.|++ ++++++|++|+.++ +...|++++|++ +.+|.||+|+|. .|+..
T Consensus 216 d~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~--~p~~~ 278 (500)
T 1onf_A 216 DESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR--SPDTE 278 (500)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB--CCTTT
T ss_pred chhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC--CcCCC
Confidence 367888999999999988 99999999999863 457888888887 899999999999 77764
No 234
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=95.14 E-value=0.021 Score=56.04 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+..++..+.. |+++++|++|+.++++|+|++.+|+++.||+||+|++...
T Consensus 217 l~~~l~~~lg~~--i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 268 (520)
T 1s3e_A 217 VSERIMDLLGDR--VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268 (520)
T ss_dssp HHHHHHHHHGGG--EESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred HHHHHHHHcCCc--EEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence 344455555654 9999999999988888999998998899999999999854
No 235
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=95.13 E-value=0.027 Score=53.51 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+.+-|.+.++..|.. |+++++|++|..++++| | +.+|+++.+|+||+|+|...
T Consensus 189 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~ 243 (421)
T 3nrn_A 189 KAVIDELERIIMENKGK--ILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRE 243 (421)
T ss_dssp HHHHHHHHHHHHTTTCE--EESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHH
T ss_pred HHHHHHHHHHHHHCCCE--EEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHH
Confidence 46677777777888876 99999999999888888 6 45677799999999999843
No 236
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=95.12 E-value=0.052 Score=53.96 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeE-EEEEc--cCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVELS--NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~-~V~~~--~g~--~~~~d~vvvAtG~~~ 107 (396)
.+.++.+.|.+.+++.++. |+++++|+++..++ ++. -|.+. +|+ ++.+|.||+|||.++
T Consensus 253 ~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 253 VGAHVVQVLYDNAVKRNID--LRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HHHHHHHHHHHHHHHTTCE--EESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 4578999999999999987 99999999998865 532 24443 565 578999999999965
No 237
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=95.10 E-value=0.039 Score=53.39 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHH-HHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYA-KKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~-~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~p~~P 112 (396)
.+++.+++.+.+ ++.+++ ++++++|++|+.+++.+.|++. +| +++.+|.||+|+|. .|+..
T Consensus 214 d~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~--~p~~~ 279 (468)
T 2qae_A 214 DEDVTNALVGALAKNEKMK--FMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR--RPFTG 279 (468)
T ss_dssp CHHHHHHHHHHHHHHTCCE--EECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE--EECCT
T ss_pred CHHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc--ccCCC
Confidence 367888899988 888987 9999999999987666777765 56 56899999999999 77754
No 238
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=95.10 E-value=0.032 Score=53.50 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE---------------eCCe-EEEEEccCcEE--EcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ---------------YEDI-WEVELSNGKKK--KYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~---------------~~~~-~~V~~~~g~~~--~~d~vvvAtG~~~ 107 (396)
....++.+.|.+.+++.|+. ++++++|++|.. ++++ |.|.+.+| ++ .+|.||+|+|.++
T Consensus 178 ~~~~~l~~~L~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 178 LDAEKVVDYYYRRASGAGVE--FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred EcHHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 35678999999999999987 899999999987 4443 67888777 47 9999999999864
No 239
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.035 Score=53.88 Aligned_cols=59 Identities=7% Similarity=0.090 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccC-cEEEcCEEEEcccCCCCCCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNG-KKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g-~~~~~d~vvvAtG~~~~p~~ 111 (396)
+++.+.+.+.+++.|+. ++++++|++|+.++++ ..|++++| +++.+|.||+|+|. .|+.
T Consensus 226 ~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~--~p~~ 287 (479)
T 2hqm_A 226 ECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR--KSHL 287 (479)
T ss_dssp HHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC--CCcc
Confidence 67888899999999988 9999999999876443 67888888 77999999999998 7776
No 240
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=95.03 E-value=0.013 Score=51.30 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 59999999999999999999999999999865
No 241
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=95.00 E-value=0.045 Score=54.68 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEc-cC--cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS-NG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~-~g--~~~~~d~vvvAtG~~~ 107 (396)
..+..+.++|.+.++..|+. ++++++|++|..+ ++.+.|++. +| .++.+|.||.|+|..+
T Consensus 125 v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 125 VKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred EcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 46789999999999998887 8999999999986 667889887 56 4689999999999965
No 242
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=94.99 E-value=0.039 Score=53.50 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE--eCCeEEEEEc-----cCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ--YEDIWEVELS-----NGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~--~~~~~~V~~~-----~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.+++ ++++++|++|+. +++.+.|++. +++++.+|.||+|+|. .|+..
T Consensus 223 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 290 (478)
T 1v59_A 223 DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR--RPYIA 290 (478)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE--EECCT
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC--CcCCC
Confidence 367889999999999988 999999999998 5566777765 3456899999999999 77764
No 243
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=94.96 E-value=0.032 Score=55.54 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 4799999999999999999999999999998763
No 244
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=94.92 E-value=0.011 Score=56.09 Aligned_cols=58 Identities=16% Similarity=0.004 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEE---------EEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVI---------NLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~---------~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.++..++. ++++++|+ ++..+++.|.|++.++ ++.+|.||+|+|.++
T Consensus 170 ~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 170 RPGSLALLAAQQAIGQGAG--LLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp CHHHHHHHHHHHHHTTTCE--EECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHCCCE--EEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence 4567899999999888876 88999999 8877666777777666 689999999999864
No 245
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=94.88 E-value=0.022 Score=46.05 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=33.0
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|.+....+....+++|+|+|+|..|.-+|..|...+.+|+++.|++
T Consensus 7 ~~~~~~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 7 HHHHHHMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp ----------CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred hhhhhhhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3333444556678999999999999999999999888999998865
No 246
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=94.87 E-value=0.059 Score=52.97 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
..+..+.++|.+.++. .|+. ++++ +|++|+.++++ ..|++.+|.++.+|.||.|+|.++
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S 233 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS 233 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence 4678999999999998 8886 8889 69999886443 367777777799999999999965
No 247
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=94.86 E-value=0.065 Score=52.33 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~--~~~~d~vvvAtG~~~ 107 (396)
....+...|...+.+.|+. ++++++|+++.++++.|.|++. +|+ ++.+|.||+|+|.++
T Consensus 147 ~~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGGE--VLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 4577888888888888987 8899999999988888988884 464 589999999999964
No 248
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=94.85 E-value=0.052 Score=52.18 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.|+. ++++++|++|+.++++......+|+++.+|.||+|+|. .|+..
T Consensus 190 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~--~p~~~ 250 (452)
T 2cdu_A 190 DKEFTDILAKDYEAHGVN--LVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF--RPNTE 250 (452)
T ss_dssp CHHHHHHHHHHHHHTTCE--EEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE--EECCG
T ss_pred hhhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC--CCCHH
Confidence 367889999999999998 99999999998766655423336778999999999999 77754
No 249
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=94.78 E-value=0.054 Score=52.30 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cC--cEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NG--KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g--~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+++.+..++.|++ ++++++|++|+.+++...|++. +| +++.+|.||+|+|. .|+...
T Consensus 211 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~--~p~~~~ 275 (464)
T 2a8x_A 211 DADVSKEIEKQFKKLGVT--ILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF--APNVEG 275 (464)
T ss_dssp CHHHHHHHHHHHHHHTCE--EECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE--EECCSS
T ss_pred CHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC--CccCCC
Confidence 367888999999999988 9999999999987656667665 56 56899999999999 777643
No 250
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=94.78 E-value=0.048 Score=52.78 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEE-----ccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVEL-----SNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~-----~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
.+++.+++.+.+++.|+. ++++++|++|+.+++. ..|+. .+++++.+|.||+|+|. .|+..
T Consensus 219 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~--~p~~~ 285 (474)
T 1zmd_A 219 DMEISKNFQRILQKQGFK--FKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR--RPFTK 285 (474)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE--EECCT
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC--CcCCC
Confidence 467889999999999988 9999999999987554 77764 34567899999999999 77754
No 251
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=94.75 E-value=0.057 Score=52.26 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+.+.+..++.++. ++++++|++++.+++...|+..++ +++.+|.||+|+|. .|+..
T Consensus 220 ~~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~--~p~~~ 283 (476)
T 3lad_A 220 DEQVAKEAQKILTKQGLK--ILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR--RPVTT 283 (476)
T ss_dssp CHHHHHHHHHHHHHTTEE--EEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE--EECCT
T ss_pred CHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC--cccCC
Confidence 467888888888888987 899999999998777777777654 56899999999998 77764
No 252
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.73 E-value=0.019 Score=51.14 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+++||+|+|||+|.+|.-.+..|.+.+.+|+++...
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 467999999999999999999999999999999865
No 253
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=94.73 E-value=0.045 Score=52.62 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
...+..++...- ..|+++++|++|+.++++|.|++.+|+++.||+||+|+...
T Consensus 236 ~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~ 288 (470)
T 3i6d_A 236 TLVEEIEKQLKL-TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHK 288 (470)
T ss_dssp HHHHHHHHTCCS-EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHH
T ss_pred HHHHHHHHhcCC-CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHH
Confidence 444555555431 35999999999999878899999999889999999999874
No 254
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=94.70 E-value=0.043 Score=53.00 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEE-EccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVE-LSNGKKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~-~~~g~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+.+++.|++ ++++++|++|+.++ +...|+ +++|+ +.+|.||+|+|. .|+...
T Consensus 210 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~--~p~~~~ 272 (463)
T 4dna_A 210 DQDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR--MPNTNG 272 (463)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE--EESCTT
T ss_pred CHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc--ccCCCC
Confidence 367888999999999988 99999999999873 447788 88887 999999999998 777653
No 255
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=94.69 E-value=0.073 Score=51.76 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+.+++.++. ++++++|++|+.+++...|++.+ | +++.+|.||+|+|. .|+...
T Consensus 238 d~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~~~ 304 (491)
T 3urh_A 238 DGEVAKQLQRMLTKQGID--FKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR--KPSTDG 304 (491)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC--EECCTT
T ss_pred CHHHHHHHHHHHHhCCCE--EEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC--ccCCCc
Confidence 467888888889998987 89999999999887777777763 4 46899999999998 777653
No 256
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=94.67 E-value=0.06 Score=52.00 Aligned_cols=60 Identities=7% Similarity=0.074 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+.+.+.+++.|+. ++++++|++|+.+++.+.|+++ +.++.+|.||+|+|. .|+..
T Consensus 215 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~--~p~~~ 274 (467)
T 1zk7_A 215 DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGR--TPNTR 274 (467)
T ss_dssp CHHHHHHHHHHHHHTTCE--EETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCE--EESCT
T ss_pred CHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCC--CcCCC
Confidence 457889999999999987 9999999999987777888876 446899999999999 67653
No 257
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=94.59 E-value=0.032 Score=54.22 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc----CcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN----GKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~----g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+..++.++. ++++++|.+|+.+++...|++.+ |+++.+|.||+|+|. .|+..
T Consensus 225 ~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~--~p~~~ 289 (482)
T 1ojt_A 225 DRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR--APNGK 289 (482)
T ss_dssp CHHHHHHHHHHHGGGEEE--EECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE--EECGG
T ss_pred CHHHHHHHHHHHHhcCCE--EEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC--CcCCC
Confidence 467888888888888887 89999999999877777787766 667889999999999 77653
No 258
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=94.57 E-value=0.094 Score=52.13 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-Ce-EEEEEc--cCc--EEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DI-WEVELS--NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~-~~V~~~--~g~--~~~~d~vvvAtG~~~ 107 (396)
.+.++.+.|.+.+++.+++ |+++++|+++..++ ++ +-|.+. +|+ ++.+|.||+|||.++
T Consensus 253 ~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 253 VGAHVAQVLWDNAVKRGTD--IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp HHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CHHHHHHHHHHHHHHcCCe--EEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence 3678999999999999987 99999999997764 43 334443 564 478999999999954
No 259
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=94.57 E-value=0.015 Score=56.76 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|+|+|||+|.+|.-+|..|++.+.+|+++.+++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 789999999999999999999999999999875
No 260
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=94.55 E-value=0.055 Score=52.31 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cC--cEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NG--KKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g--~~~~~d~vvvAtG~~~~p~~P 112 (396)
.+++.+++.+.+++.++. ++++++|.+|+.+++...|++. +| +++.+|.||+|+|. .|+..
T Consensus 217 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 282 (470)
T 1dxl_A 217 DAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR--TPFTS 282 (470)
T ss_dssp CHHHHHHHHHHHHHSSCC--EECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCE--EECCT
T ss_pred cHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCC--CcCCC
Confidence 468889999999999998 9999999999986655667664 44 56899999999999 77654
No 261
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=94.42 E-value=0.081 Score=52.17 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
-+++.+.++...++.++. ++++++|.+++..++...|.+.++.++.+|.|++|+|. +|+.-
T Consensus 262 D~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR--~Pnt~ 322 (542)
T 4b1b_A 262 DQQCAVKVKLYMEEQGVM--FKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR--KGDID 322 (542)
T ss_dssp CHHHHHHHHHHHHHTTCE--EEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EESCG
T ss_pred chhHHHHHHHHHHhhcce--eecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc--cCCcc
Confidence 468899999999999987 89999999999998888899988888899999999998 88765
No 262
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=94.38 E-value=0.06 Score=51.12 Aligned_cols=53 Identities=4% Similarity=0.097 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
+.++.+..++.++. .|+++++|++|+.+++++.|++.+|+ +.||+||+|++..
T Consensus 205 ~~~l~~~l~~~l~~--~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~ 257 (424)
T 2b9w_A 205 TQAMFEHLNATLEH--PAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE 257 (424)
T ss_dssp HHHHHHHHHHHSSS--CCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred HHHHHHHHHHhhcc--eEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence 45556666666654 48999999999988778999888876 8999999999984
No 263
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=94.31 E-value=0.048 Score=52.69 Aligned_cols=54 Identities=6% Similarity=0.203 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
+..+.+..++...- ..|+++++|++|++++++|+|++.+| ++.||+||+|++..
T Consensus 235 ~~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~ 288 (475)
T 3lov_A 235 LESLIERLEEVLER-SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHP 288 (475)
T ss_dssp HHHHHHHHHHHCSS-CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHH
T ss_pred HHHHHHHHHhhccC-CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHH
Confidence 44456666666542 35999999999999888999999888 68999999999984
No 264
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=94.20 E-value=0.042 Score=52.75 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 114 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~ 114 (396)
..++.+++.+.+++.|+. ++++++|++|+.+++.+.|.+ ++.++.+|.||+|+|. .|+.+-+
T Consensus 190 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~--~p~~~~~ 251 (447)
T 1nhp_A 190 DKEFTDVLTEEMEANNIT--IATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGV--RPNTAWL 251 (447)
T ss_dssp CHHHHHHHHHHHHTTTEE--EEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCE--EESCGGG
T ss_pred CHHHHHHHHHHHHhCCCE--EEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCC--CCChHHH
Confidence 468889999999999987 899999999987533345666 4567899999999998 7776533
No 265
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=94.17 E-value=0.11 Score=47.33 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=29.4
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|.+.......+..++|+|||+|..|.=+|..|++.+.+|+++ +++
T Consensus 7 ~~~~~~~~~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 7 HHHHHHENLYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp -------------CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred cccccchhhhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 333344445667789999999999999999999988899998 654
No 266
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=94.12 E-value=0.095 Score=54.62 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
....+.+.|.+.+++.|+. |+++++|++|+.+++++ .|.+.+| ++.+|.||+|+|.++
T Consensus 149 ~p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCE--EECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 4568889999999998987 88999999999876664 5777777 589999999999964
No 267
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=94.09 E-value=0.12 Score=52.12 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC----eEEEEEc------cC--cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELS------NG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~----~~~V~~~------~g--~~~~~d~vvvAtG~~~ 107 (396)
.++..+.++|.+.+.+++..-.|+++++|++++.+++ .+.|+++ +| .++.+|+||.|+|.++
T Consensus 138 i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 138 LNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred eCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 4678999999999999876223999999999998642 5888765 35 4589999999999976
No 268
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=94.01 E-value=0.048 Score=52.64 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
..+.+.|.+.+...|.. |+++++|++|++++++ |.|++. +.++.||+||+|++..
T Consensus 234 ~~l~~~l~~~l~~~g~~--i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 234 EMLPQALETHLTSRGVS--VLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPAS 289 (477)
T ss_dssp THHHHHHHHHHHHTTCE--EECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCE--EEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHH
Confidence 36777888888777876 9999999999987555 999774 4468999999999874
No 269
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=93.95 E-value=0.061 Score=52.02 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=36.5
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 67 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 67 ~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.|+++++|++|+..+++++|++.+|+++.+|+||+|++..
T Consensus 230 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~ 269 (472)
T 1b37_A 230 RLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG 269 (472)
T ss_dssp TEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred EEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence 5999999999999888899999999889999999999973
No 270
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=93.93 E-value=0.097 Score=50.73 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQ 106 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~ 106 (396)
..+..++..+- ..|+++++|++|++.+++|+|++.+| +++.||+||+|+...
T Consensus 241 l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~ 295 (489)
T 2jae_A 241 IYYAFQDRIGT-DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH 295 (489)
T ss_dssp HHHHHHHHHCG-GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred HHHHHHHhcCC-CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence 34444444431 34999999999999888999998876 568999999999873
No 271
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=93.92 E-value=0.14 Score=50.95 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeE-EEEEc------cC---------cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVELS------NG---------KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~-~V~~~------~g---------~~~~~d~vvvAtG~~~ 107 (396)
.++.++.++|.+.++..++. |+++++|+++..++ +.. .|++. +| .++.+|.||+|+|.++
T Consensus 141 v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 141 VRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred EeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence 46789999999999999887 99999999998874 433 36665 23 5689999999999965
No 272
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=93.91 E-value=0.029 Score=53.66 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3689999999999999999999999999999875
No 273
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=93.85 E-value=0.052 Score=52.46 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE---ccCcEEEcCEEEEcccCC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~---~~g~~~~~d~vvvAtG~~ 106 (396)
..+..++..+. .|+++++|++|+.++++|.|++ .+|+++.||+||+|++..
T Consensus 240 l~~~l~~~lg~--~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~ 293 (478)
T 2ivd_A 240 LIDALAASLGD--AAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH 293 (478)
T ss_dssp HHHHHHHHHGG--GEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred HHHHHHHHhhh--hEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence 33444444443 4999999999998877799998 677779999999999984
No 274
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=93.83 E-value=0.13 Score=49.85 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCc-----EEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGK-----KKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~-----~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.++. ++++++|.+|+.+ ++...|++.++. ++.+|.||+|+|. .|+..
T Consensus 226 d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~--~p~~~ 292 (483)
T 3dgh_A 226 DQQMAELVAASMEERGIP--FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR--KGLVD 292 (483)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE--EECCG
T ss_pred CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc--ccCcC
Confidence 467888999999999998 9999999999986 445677776543 6899999999998 77654
No 275
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=93.71 E-value=0.066 Score=51.32 Aligned_cols=50 Identities=8% Similarity=-0.054 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343 55 LRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
.+..++..+. .|+++++|++|+.++++ |.|++ ++.++.+|+||+|++...
T Consensus 218 ~~~l~~~lg~--~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~ 268 (453)
T 2yg5_A 218 SIRMAEALGD--DVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNL 268 (453)
T ss_dssp HHHHHHHHGG--GEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGG
T ss_pred HHHHHHhcCC--cEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHH
Confidence 3344555554 49999999999988777 88876 666789999999999853
No 276
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=93.59 E-value=0.15 Score=49.74 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeE-EEEEc-cCc--EEEcC-EEEEcccCCC
Q psy2343 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIW-EVELS-NGK--KKKYD-FIAVCNGAQR 107 (396)
Q Consensus 50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~-~V~~~-~g~--~~~~d-~vvvAtG~~~ 107 (396)
.+.+.|.+.+++.+++ |+++++|+++..+ +++. -|.+. +++ ++.+| .||+|||.++
T Consensus 203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 8999999999999987 9999999999887 4443 24443 333 47895 9999999975
No 277
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=93.58 E-value=0.11 Score=46.20 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||.|. .|.-+|..|+..+..|++++|+.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t 194 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT 194 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 57899999999776 69999999999888899998753
No 278
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=93.54 E-value=0.1 Score=50.62 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.|+. ++++++|++|+.+++.+.|.++ +.++.+|.||+|+|. .|+.+
T Consensus 226 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~--~p~~~ 285 (480)
T 3cgb_A 226 DGDMAEYIYKEADKHHIE--ILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGV--KPNTD 285 (480)
T ss_dssp CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCE--EESCG
T ss_pred CHHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCC--CcChH
Confidence 467888999999999987 8999999999875444556664 446899999999998 66654
No 279
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=93.48 E-value=0.14 Score=49.81 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+.+.+..+.. +. ++++++|++|+.++++..|+.. +| .++.+|.||+|+|. .|+...
T Consensus 214 d~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~--~p~~~~ 278 (492)
T 3ic9_A 214 DEEMKRYAEKTFNEE-FY--FDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR--KANVDK 278 (492)
T ss_dssp CHHHHHHHHHHHHTT-SE--EETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC--EESCSS
T ss_pred CHHHHHHHHHHHhhC-cE--EEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC--ccCCCC
Confidence 357888888887765 66 8899999999987777777775 56 56899999999999 777654
No 280
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=93.43 E-value=0.11 Score=49.63 Aligned_cols=56 Identities=7% Similarity=-0.054 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.++.+-|.+.++..|.. |+++++|++|..+++++.+...+|+++.+|+||+|+|..
T Consensus 234 ~~l~~~l~~~~~~~G~~--i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~ 289 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGT--YMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYV 289 (433)
T ss_dssp THHHHHHHHHHHHHTCC--CBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCE--EECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCC
Confidence 57888888888888877 999999999998877766444577789999999999984
No 281
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=93.42 E-value=0.15 Score=45.72 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||.|. .|.-+|..|...+..|++++|+.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T 199 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT 199 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999776 79999999999888999998753
No 282
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=93.32 E-value=0.17 Score=50.12 Aligned_cols=59 Identities=7% Similarity=-0.100 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEcc---C--cEEEcCEEEEcccCCC
Q psy2343 47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSN---G--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~---g--~~~~~d~vvvAtG~~~ 107 (396)
....+...|...+...|.. |+++++|+++.+++++ |.|++.+ | .++.+|.||+|+|.++
T Consensus 168 d~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 168 DDARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 4567888888888889987 9999999999998665 5677754 3 3588999999999864
No 283
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=93.16 E-value=0.11 Score=50.58 Aligned_cols=60 Identities=8% Similarity=0.126 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P 112 (396)
..++.+++.+.+++.|+. ++++++|++|+.+++...|.+ +++++.+|.||+|+|. .|+.+
T Consensus 235 ~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~--~p~~~ 294 (490)
T 2bc0_A 235 DRDLTDLMAKNMEEHGIQ--LAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGF--RPNTT 294 (490)
T ss_dssp CHHHHHHHHHHHHTTTCE--EEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCE--EECCG
T ss_pred HHHHHHHHHHHHHhCCeE--EEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCC--CcChH
Confidence 367888999999999988 999999999986332223555 6677999999999998 77754
No 284
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=93.11 E-value=0.072 Score=50.01 Aligned_cols=34 Identities=32% Similarity=0.243 Sum_probs=31.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
++|+|||+|..|++.|..+++.+.+|.++.+++.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 4799999999999999999999999999998763
No 285
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=92.99 E-value=0.059 Score=50.23 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=30.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999998763
No 286
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=92.88 E-value=0.21 Score=48.29 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEE-eCC-eEEEEEccCcEEEcCEEEEcccCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YED-IWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~-~~~-~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.++.+-|.+.++..|.. |+++++|++|.. +++ .+.|++.+|+++.+|+||+|.|..
T Consensus 256 ~~L~~aL~r~~~~~Gg~--i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGT--FMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--C--EESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCE--EEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 57888999999999987 999999999998 444 477888888889999999999973
No 287
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=92.78 E-value=0.38 Score=42.93 Aligned_cols=57 Identities=9% Similarity=-0.033 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeE-EEEEc---------cC-----cEEEcCEEEEcccC
Q psy2343 47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELS---------NG-----KKKKYDFIAVCNGA 105 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~-~V~~~---------~g-----~~~~~d~vvvAtG~ 105 (396)
+..++...|.+.+.+ .++. ++++++|+++..++++. -|.+. ++ .++.+|.||+|||.
T Consensus 117 ~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~ 189 (284)
T 1rp0_A 117 HAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH 189 (284)
T ss_dssp CHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred CHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCC
Confidence 466777777777755 5776 89999999999876543 34432 22 46899999999998
No 288
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=92.75 E-value=0.066 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999864
No 289
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=92.45 E-value=0.072 Score=50.52 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence 479999999999999999999999999999864
No 290
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=92.44 E-value=0.069 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999999864
No 291
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=92.32 E-value=0.088 Score=49.43 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=30.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 79999999999999999999999999999875
No 292
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=92.15 E-value=0.09 Score=48.52 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999999874
No 293
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=92.12 E-value=0.074 Score=49.35 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=30.1
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 79999999999999999999999999999864
No 294
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=92.11 E-value=0.13 Score=41.23 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++|+|+|+|..|..++..|.+.+.+|+++.+.+
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 35789999999999999999999888999999863
No 295
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=91.98 E-value=0.092 Score=50.65 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~ 169 (396)
++|+|||||.+|+=+|..|++.+. +|+++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 589999999999999999999988 999999864
No 296
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=91.94 E-value=0.096 Score=48.88 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999999864
No 297
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=91.89 E-value=0.1 Score=49.30 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
No 298
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=91.77 E-value=0.085 Score=51.30 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+.+|..|++.+.+|+++.+++
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~ 66 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5789999999999999999999899999998864
No 299
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=91.77 E-value=0.34 Score=46.99 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEcCEEEEcccCCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQRVARYPN 113 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g~--~~~~d~vvvAtG~~~~p~~P~ 113 (396)
..++.+++.+..++.++. ++++++|.+|+.. ++...|+..+ |+ ++.+|.||+|+|. .|+...
T Consensus 224 d~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~--~p~~~~ 291 (488)
T 3dgz_A 224 DQQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR--VPETRT 291 (488)
T ss_dssp CHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE--EESCGG
T ss_pred CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC--CcccCc
Confidence 467889999999999988 9999999999885 5556676654 54 3689999999998 777643
No 300
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=91.68 E-value=0.087 Score=49.31 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~ 170 (396)
++|+|||||.+|+-+|..|++. +.+|+++.+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 4799999999999999999998 899999998753
No 301
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=91.68 E-value=0.24 Score=48.39 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
+..-++..++.+. ...|++|++|++|+.. ++.+.|++.+|+++.||+||+|++..
T Consensus 201 ~~~l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~ 256 (516)
T 1rsg_A 201 YDSVVQRIAQSFP-QNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQS 256 (516)
T ss_dssp HHHHHHHHHTTSC-GGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHH
T ss_pred HHHHHHHHHHhCC-CCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHH
Confidence 3344444444442 1359999999999986 67799999999889999999999873
No 302
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=91.67 E-value=0.13 Score=47.66 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.+..
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 589999999999999999999999999999863
No 303
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=91.60 E-value=0.11 Score=49.12 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~ 40 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD 40 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 468999999999999999999998 8999999864
No 304
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=91.59 E-value=0.091 Score=39.65 Aligned_cols=35 Identities=29% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+++|+|+|+|..|..++..|.+.+ .+|+++.|++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 3579999999999999999999887 7899998864
No 305
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=91.57 E-value=0.097 Score=48.81 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999998999999864
No 306
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=91.41 E-value=0.11 Score=48.19 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|+ .+.+|+++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 468999999999999999999 488999999874
No 307
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=91.40 E-value=0.35 Score=48.01 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS---NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~---~g~--~~~~d~vvvAtG~~~ 107 (396)
...+...+...+.+.|.. |+++++|+++.+++++ |.|++. +++ ++.+|.||+|||.++
T Consensus 187 ~~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred hHHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 455666677778888887 8999999999987654 667653 233 589999999999964
No 308
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=91.37 E-value=0.12 Score=48.29 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=30.5
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus 6 dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~ 37 (397)
T 3cgv_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 79999999999999999999999999999976
No 309
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=91.36 E-value=0.14 Score=43.68 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=31.1
Q ss_pred ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
|.+......+...++|.|||+|..|.-+|..|++.+.+|+++.|++.
T Consensus 7 ~~~~~~~~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 7 HHHHHHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -------------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred cccccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 33334444566788999999999999999999998889999988753
No 310
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=91.28 E-value=0.13 Score=48.49 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=31.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~ 170 (396)
.+|+|||+|.+|+-+|..|++.+.+ |+++.|++.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4899999999999999999999989 999999763
No 311
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=91.27 E-value=0.31 Score=45.57 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~ 107 (396)
+.++.+-|.+ .+...|+|+++|++++.. ++..+|++++|+++++|.||-|-|.+|
T Consensus 111 R~~L~~~L~~-----~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 166 (412)
T 4hb9_A 111 RTELKEILNK-----GLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS 166 (412)
T ss_dssp HHHHHHHHHT-----TCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred HHHHHHHHHh-----hccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence 4455544432 234569999999999886 567899999999999999999999976
No 312
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=91.27 E-value=0.12 Score=48.27 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
+.++|+|||+|.+|+-+|..|.+.+.+|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4679999999999999999999999999999987
No 313
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=91.23 E-value=0.12 Score=49.84 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~ 49 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 49 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 35689999999999999999999989999999875
No 314
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=91.18 E-value=0.14 Score=49.66 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~ 44 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 35689999999999999999999888999998764
No 315
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=91.17 E-value=0.24 Score=51.06 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=36.8
Q ss_pred CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 63 DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 63 ~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
++. |+++++|++|+.++++++|++.+|+++.+|+||+|+..
T Consensus 543 gl~--I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 543 GLD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TSC--EESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred CCc--EEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence 554 99999999999988889999999988999999999965
No 316
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=91.16 E-value=0.14 Score=40.13 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++++|+|+|+|..|..++..|.+.+.+|+++.|.+
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456789999999999999999999888899988764
No 317
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=91.14 E-value=0.14 Score=39.91 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.+|+|+|+|..|..+|..|.+.+.+|+++.|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999888899998764
No 318
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=91.12 E-value=0.11 Score=48.77 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhc-CC-CcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH-HS-EKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~-~~-~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++ .+ .+|+++.+..
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 88 8999999865
No 319
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=91.03 E-value=0.13 Score=48.92 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=29.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~ 34 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 69999999999999999999999999999854
No 320
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=90.92 E-value=0.1 Score=48.10 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=29.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCC------CcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~------~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++.+ .+|+++.+..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 37999999999999999999986 7899999864
No 321
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=90.67 E-value=0.33 Score=47.00 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=34.7
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCc----EEEcCEEEEcccCC
Q psy2343 67 HSIFNTEVINLEQYEDIWEVELSNGK----KKKYDFIAVCNGAQ 106 (396)
Q Consensus 67 ~i~~~t~V~~v~~~~~~~~V~~~~g~----~~~~d~vvvAtG~~ 106 (396)
.|+++++|++|+.++++|.|++.+++ ++.+|+||+|++..
T Consensus 254 ~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~ 297 (498)
T 2iid_A 254 KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR 297 (498)
T ss_dssp GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence 59999999999998888999887654 47999999999974
No 322
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=90.66 E-value=0.13 Score=49.32 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=30.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus 8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~ 39 (453)
T 3atr_A 8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39 (453)
T ss_dssp SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 69999999999999999999999999999875
No 323
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=90.64 E-value=0.14 Score=49.81 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
-.|+|||||.+|+-+|..|++. +.+|+++.+++
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~ 44 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 4799999999999999999874 88999999875
No 324
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.60 E-value=0.17 Score=39.83 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++|+|+|+|..|..+|..|.+.+.+|+++.+.+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 35789999999999999999999989999998864
No 325
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=90.40 E-value=0.093 Score=50.22 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEec
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTR 167 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r 167 (396)
..+|+|||+|.+|+-+|..|++.+ .+|+++.+
T Consensus 23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 357999999999999999999988 89999998
No 326
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=90.39 E-value=0.19 Score=47.13 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~ 36 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 489999999999999999999889999999864
No 327
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=90.38 E-value=0.17 Score=48.25 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+. +|+++.+.+
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999988 999999875
No 328
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=90.27 E-value=0.15 Score=49.64 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus 4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 369999999999999999999999999999864
No 329
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=90.23 E-value=0.36 Score=42.96 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||.|. .|.-+|..|...+..|++++++.
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 193 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT 193 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 57899999999997 59999999999999999998764
No 330
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=90.19 E-value=0.69 Score=45.99 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe-EEEEE---ccCc--EEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVEL---SNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~-~~V~~---~~g~--~~~~d~vvvAtG~~~ 107 (396)
+.++.+.|.+.+.+.++. |+++++|+++..+ +++ +-|.. .+|+ ++.+++||+|||.++
T Consensus 142 g~~l~~~L~~~~~~~gv~--i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 142 GHALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHHhCCCE--EEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 468889999999888887 9999999999875 443 33443 3554 478999999999965
No 331
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=90.16 E-value=0.42 Score=45.82 Aligned_cols=55 Identities=5% Similarity=-0.066 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCeE-EEEEccCcEEEcCEEEEcccCC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIW-EVELSNGKKKKYDFIAVCNGAQ 106 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~~-~V~~~~g~~~~~d~vvvAtG~~ 106 (396)
.++.+-|.+.++..|.. |+++++|++|..+ ++++ .|.+ +|+++.+|+||+|+|.+
T Consensus 242 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGT--YMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF 299 (453)
T ss_dssp THHHHHHHHHHHHTTCE--EECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCE--EECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence 47888888888888876 9999999999987 6664 4555 57779999999999984
No 332
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=90.13 E-value=0.52 Score=47.02 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCe-EEEE---EccCc--EEEcCEEEEcccCCCCC
Q psy2343 48 HSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDI-WEVE---LSNGK--KKKYDFIAVCNGAQRVA 109 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~-~~V~---~~~g~--~~~~d~vvvAtG~~~~p 109 (396)
+.++...|.+.+.+.+ +. ++++++|+++..+++. .-|. +.+|+ ++.+++||+|||.++..
T Consensus 133 g~~l~~~L~~~~~~~gnv~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 133 GFHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 199 (602)
T ss_dssp HHHHHHHHHHHHTTCTTEE--EEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred HHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence 5688888888888777 66 8899999999877553 2222 24565 58899999999997543
No 333
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=90.00 E-value=0.089 Score=50.50 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCC------CcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~------~~V~l~~r~~ 169 (396)
++|+|||||.+|+=+|..|++.+ .+|+++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~ 44 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence 58999999999999999999988 8999999864
No 334
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=89.96 E-value=0.15 Score=49.76 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ 42 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD 42 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 458999999999999999999998 8999999865
No 335
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=89.93 E-value=0.23 Score=50.39 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
..+|+|||||.+|+-+|..|++.+.+|+++.+.
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~ 304 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD 304 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 368999999999999999999999999999985
No 336
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=89.92 E-value=0.16 Score=48.02 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=30.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++. +.+|+++.+..
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4799999999999999999998 89999999864
No 337
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=89.87 E-value=0.28 Score=49.83 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
..+|+|||||.+|+=+|..|++.+.+|+++.+.
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~ 296 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCAD 296 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 368999999999999999999999999999985
No 338
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=89.86 E-value=0.23 Score=42.76 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 568999999997 9999999999999999999999975
No 339
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=89.84 E-value=0.17 Score=50.20 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus 33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999864
No 340
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=89.79 E-value=0.23 Score=49.22 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.|+|||||.+|+-+|.+|++.+.+|.++.+.+
T Consensus 19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 379999999999999999999999999999863
No 341
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=89.78 E-value=0.17 Score=49.42 Aligned_cols=33 Identities=30% Similarity=0.232 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 37 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 37 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 579999999999999999999999999999864
No 342
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=89.74 E-value=0.24 Score=49.43 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 45799999999999999999999999999999874
No 343
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=89.74 E-value=0.38 Score=42.63 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCc-HHHHHHHHhcC--CCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNS-GCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
++.||+|+|||.|.+ |.-+|..|... +..|++++|+.
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t 194 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT 194 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 678999999999975 99999999998 78999998764
No 344
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=89.73 E-value=0.19 Score=48.26 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~ 44 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 44 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999875
No 345
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=89.64 E-value=0.22 Score=48.96 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~ 169 (396)
..+|+|||||.+|+-+|..|++ .+.+|+++.+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 3589999999999999999999 888999999864
No 346
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=89.61 E-value=0.21 Score=49.93 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.6
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||||..|+.+|..+++.+.+|.++.+.+
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 54 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL 54 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 489999999999999999999999999999863
No 347
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=89.56 E-value=0.23 Score=48.16 Aligned_cols=34 Identities=38% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~ 46 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 46 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 4689999999999999999999999999998875
No 348
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=89.56 E-value=0.2 Score=50.08 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||||..|+.+|..+++.+.+|.++.+.+
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~ 60 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA 60 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence 479999999999999999999999999999863
No 349
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=89.53 E-value=0.22 Score=46.92 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~ 62 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP 62 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence 3589999999999999999999989999999864
No 350
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.51 E-value=0.2 Score=41.35 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
...+++|+|+|.|..|..+|..|.+. +.+|+++.+++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 34577999999999999999999988 88999998864
No 351
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=89.49 E-value=0.41 Score=45.90 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=34.3
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++++|+|+|||.|.||+-+|..|.+.+.+|+.+.++.
T Consensus 5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 35689999999999999999999999999999998854
No 352
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=89.46 E-value=0.23 Score=48.78 Aligned_cols=34 Identities=35% Similarity=0.361 Sum_probs=31.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.|.+.
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~ 39 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG 39 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999998763
No 353
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=89.34 E-value=0.24 Score=48.42 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 479999999999999999999999999999875
No 354
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=89.24 E-value=1 Score=45.44 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEE---ccCc--EEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVEL---SNGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~---~~g~--~~~~d~vvvAtG~~~ 107 (396)
+..+...|.+.+.+.++. |+++++|+++..++++ .-|.. .+|+ .+.+++||+|||.++
T Consensus 157 G~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHHhCCCE--EEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 568999999999888987 9999999999876553 22322 4565 478999999999965
No 355
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=89.19 E-value=0.21 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~ 159 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 159 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999875
No 356
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=89.07 E-value=0.45 Score=43.18 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCCc-HHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||+|.+ |.-+|..|...+..|+++.|+.
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~ 211 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN 211 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence 678999999999975 9999999998888899998864
No 357
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=89.02 E-value=0.26 Score=47.95 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
..+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~ 46 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ 46 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34799999999999999999999999999998753
No 358
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=89.01 E-value=0.44 Score=42.67 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||+|. .|.-+|..|...+..|++++++.
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 199 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT 199 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc
Confidence 57899999999996 69999999999988999998653
No 359
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=88.96 E-value=0.26 Score=38.83 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|+|.|..|..+|..|.+.+.+|+++.+.+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3579999999999999999999999999999875
No 360
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=88.89 E-value=1.1 Score=44.81 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEE---ccCc--EEEcCEEEEcccCCCC
Q psy2343 48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL---SNGK--KKKYDFIAVCNGAQRV 108 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~---~~g~--~~~~d~vvvAtG~~~~ 108 (396)
+.++...|...+.+.++. |+++++|+++..++++. -|.. .+|+ .+.+++||+|||.++.
T Consensus 154 G~~l~~~L~~~~~~~gv~--i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 154 GHSLLHTLYGRSLRYDTS--YFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp HHHHHHHHHHHHTTSCCE--EEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHHhCCCE--EEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 568888998888888887 99999999998765532 2333 3564 5789999999999764
No 361
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=88.83 E-value=0.27 Score=45.76 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=29.4
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~ 34 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999888999998764
No 362
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=88.78 E-value=0.25 Score=48.72 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~ 60 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG 60 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3799999999999999999999999999998763
No 363
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=88.72 E-value=0.3 Score=48.18 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~ 169 (396)
.++|+|||||..|.=+|..|++ .+.+|+++.+.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999 788999999864
No 364
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=88.57 E-value=0.5 Score=42.01 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.||+|+|||.|. .|.-+|..|...+..|++++|+.
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 195 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT 195 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 57899999999876 69999999999888999998763
No 365
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=88.54 E-value=0.28 Score=46.88 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~ 38 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARD 38 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 579999999999999999999988999998864
No 366
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=88.49 E-value=0.27 Score=47.90 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=31.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
.+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~ 45 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE 45 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999998763
No 367
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=88.26 E-value=0.54 Score=41.81 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++||+|+|||.|. .|.-+|..|+..+..|++++++.
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T 195 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT 195 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999765 79999999999888999998754
No 368
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=88.26 E-value=0.26 Score=46.48 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++. +.+|+++.+++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~ 41 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35799999999999999999998 88999998764
No 369
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=88.22 E-value=0.23 Score=47.83 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~ 39 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 358999999999999999999988 8999999854
No 370
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=88.22 E-value=0.38 Score=42.73 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|+|+|..|.-+|..|++.+.+|+++.|+.
T Consensus 116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4578999999999999999999999888999998864
No 371
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=88.18 E-value=0.3 Score=49.42 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-.+++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~ 140 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 357899999999999999999999999999999764
No 372
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=88.11 E-value=0.58 Score=41.77 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
..++|+|+|+|+|..|.-++..|.+.+ ++|+++.|+.
T Consensus 119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 467999999999999999999998875 4899999874
No 373
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=88.04 E-value=0.21 Score=48.69 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=29.1
Q ss_pred CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~ 169 (396)
.+|+|||||.+|+=+|..|++ .+.+|+++.+..
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 479999999999999999999 888999999864
No 374
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=88.02 E-value=0.28 Score=47.47 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~ 72 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARD 72 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3589999999999999999999989999999864
No 375
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=88.02 E-value=0.24 Score=45.24 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=29.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+-+|..|++. +.+|+++.+.+
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~ 100 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence 799999999999999999987 88999999865
No 376
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=88.01 E-value=0.43 Score=46.34 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=41.0
Q ss_pred HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343 57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111 (396)
Q Consensus 57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~ 111 (396)
+.+++.|++ ++++++|++|+.+++...|.+.+|+++.+|.||+|+|. .|+.
T Consensus 265 ~~l~~~GV~--v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~--~p~~ 315 (493)
T 1y56_A 265 QELERWGID--YVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGR--RPDI 315 (493)
T ss_dssp HHHHHHTCE--EEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCE--EECC
T ss_pred HHHHhCCcE--EEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCc--CcCc
Confidence 455667887 88999999998765555677778888999999999999 6664
No 377
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=88.00 E-value=0.26 Score=45.32 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~ 169 (396)
-+|+|||+|.+|+-+|..|++. +.+|.++.+.+
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~ 114 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4799999999999999999996 78999999875
No 378
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=87.95 E-value=0.3 Score=46.72 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++++|+|+|||.|.+|+..|..|++.+.+|+.+..+.
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 38 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence 3578999999999999999999999999999998765
No 379
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=87.85 E-value=0.26 Score=48.79 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~ 154 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 154 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 379999999999999999999888999999875
No 380
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=87.76 E-value=0.35 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~ 311 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 57899999999999999999999999999999764
No 381
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=87.55 E-value=0.38 Score=42.72 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|+|+|..|.-+|..|++.+.+|+++.|+.
T Consensus 116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678999999999999999999999888999999874
No 382
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=87.50 E-value=0.35 Score=47.22 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+-.|..|++.+.+|.++.+.+
T Consensus 43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~ 74 (510)
T 4at0_A 43 DVVVAGYGIAGVAASIEAARAGADVLVLERTS 74 (510)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 69999999999999999999998999999875
No 383
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=87.45 E-value=0.4 Score=46.45 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~ 43 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 468999999999999999999987 7999999875
No 384
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=87.32 E-value=0.64 Score=41.11 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.||+|+|||.|. .|.-+|..|...+..|++++++.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t 184 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT 184 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 7899999999875 79999999999888999998753
No 385
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=87.28 E-value=0.24 Score=45.18 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhc--CCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~--~~~~V~l~~r~~ 169 (396)
....|+|||+|..|+-+|..|++ .+.+|+++.+.+
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~ 100 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 45679999999999999999974 478999999864
No 386
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=87.27 E-value=0.46 Score=42.24 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+++|+++|+|+|..|.-++..|++.+ ++|+++.|+.
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 467999999999999999999999886 6899998874
No 387
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=87.26 E-value=0.55 Score=41.94 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+++|+++|+|+|..|.-++..|++.+ ++|+++.|+.
T Consensus 123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 567999999999999999999999887 6899999874
No 388
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=87.19 E-value=0.44 Score=42.21 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|+|+|+|..|.-++..|++.+.+|+++.|+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 8999999999999999999999888999999875
No 389
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=87.11 E-value=0.37 Score=48.53 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcHHHHHHHHhc-CCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASH-HSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~-~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++ .+.+|.++.+++
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~ 66 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE 66 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 379999999999999999999 899999999875
No 390
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=86.98 E-value=0.64 Score=46.97 Aligned_cols=39 Identities=21% Similarity=-0.014 Sum_probs=34.4
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEcc------CcEEEcCEEEEcccC
Q psy2343 67 HSIFNTEVINLEQYEDIWEVELSN------GKKKKYDFIAVCNGA 105 (396)
Q Consensus 67 ~i~~~t~V~~v~~~~~~~~V~~~~------g~~~~~d~vvvAtG~ 105 (396)
.|++|++|++|+..+++++|++.+ +.+++||+||+|+..
T Consensus 412 ~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~ 456 (662)
T 2z3y_A 412 DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL 456 (662)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCH
T ss_pred ceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCH
Confidence 399999999999998889999876 567999999999986
No 391
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=86.91 E-value=0.37 Score=47.17 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHhc------------CCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASH------------HSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~------------~~~~V~l~~r~~ 169 (396)
.++|+|||||.+|.=+|..|++ .+.+|+++.+..
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 4689999999999999999999 778999999864
No 392
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=86.77 E-value=0.25 Score=39.07 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++|+|||+|..|.-++..|...+.+|+++.|++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 8899999999999999998887766688888864
No 393
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=86.72 E-value=0.55 Score=42.65 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
..+++|+++|+|+|-.|.-++..|++.+. +|+++.|++
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~ 188 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD 188 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence 35689999999999988899999988764 899999973
No 394
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=86.64 E-value=0.43 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
-+|+|||+|.+|+-+|..|++.+.+|.++.+++
T Consensus 21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~ 53 (475)
T 3p1w_A 21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNP 53 (475)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccC
Confidence 379999999999999999999999999999875
No 395
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=86.60 E-value=0.57 Score=42.03 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|+|||.|..|..+|..+...+.+|+++.|++
T Consensus 151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35789999999999999999999998887899888764
No 396
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=86.33 E-value=0.77 Score=44.43 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCceEeCcEEEEEEEeCCe------EEEEEc--cC---cEEEcCEEEEcccC
Q psy2343 54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDI------WEVELS--NG---KKKKYDFIAVCNGA 105 (396)
Q Consensus 54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~------~~V~~~--~g---~~~~~d~vvvAtG~ 105 (396)
-.+..+++.+ ...|+++++|++|+..+++ |.|++. +| +++.||+||+|+..
T Consensus 245 l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~ 306 (504)
T 1sez_A 245 LTDAICKDLR-EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPL 306 (504)
T ss_dssp HHHHHHTTSC-TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCH
T ss_pred HHHHHHhhcc-cceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCH
Confidence 3444445544 1359999999999988665 888875 35 46789999999987
No 397
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=86.31 E-value=0.71 Score=41.95 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=35.0
Q ss_pred CCCCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 130 SPDQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 130 ~~~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+..+++++|+|.|+ |..|..++..|++.+.+|+++.|+.
T Consensus 14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~ 54 (330)
T 2pzm_A 14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA 54 (330)
T ss_dssp CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 345788999999997 9999999999999888999999854
No 398
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=86.19 E-value=0.43 Score=49.65 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+. +|+++.+..
T Consensus 5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~ 38 (830)
T 1pj5_A 5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 38 (830)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 479999999999999999999987 899999865
No 399
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=86.13 E-value=0.61 Score=41.99 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.|++|+|||.|..|..+|..+...+.+|+++.|++
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46789999999999999999999998888899988764
No 400
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=86.11 E-value=0.58 Score=41.50 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
++++|+|.|+|..|..++..|++.+.+|+.+.|+..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 357899999999999999999999899999999753
No 401
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=86.04 E-value=0.57 Score=41.93 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|+|+|..|..+|..|++.+ +|+++.|+.
T Consensus 125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~ 160 (287)
T 1nvt_A 125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 160 (287)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence 467899999999999999999999999 999988864
No 402
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=85.92 E-value=0.4 Score=42.71 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+++|+++|+|+|..|.-++..|++.+. +|+++.|+.
T Consensus 114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 151 (277)
T 3don_A 114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM 151 (277)
T ss_dssp TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4678999999999999999999998864 899999875
No 403
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=85.84 E-value=0.65 Score=41.79 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+++|+|+|+|+|..|.-+|..|++.+. +|+++.|+.
T Consensus 138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4678999999999999999999998864 899998874
No 404
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=85.83 E-value=0.51 Score=46.95 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.9
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+=+|..+++.+.+|.++.+.+
T Consensus 9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~ 40 (588)
T 2wdq_A 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 69999999999999999999888999999864
No 405
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=85.67 E-value=0.68 Score=41.95 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
..+++|+++|+|+|-.|.-++..|++.+ ++|+++.|++
T Consensus 144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~ 182 (312)
T 3t4e_A 144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD 182 (312)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 3567999999999999999999998875 5899999973
No 406
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=85.66 E-value=0.6 Score=45.90 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEE-eCC------e-EEEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343 48 HSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQ-YED------I-WEVELS---NGK--KKKYDFIAVCNGAQR 107 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~-~~~------~-~~V~~~---~g~--~~~~d~vvvAtG~~~ 107 (396)
+.++.+.|.+.+.+ .++. |+++++|+++.. +++ + +-|.+. +|+ ++.+++||+|||.++
T Consensus 137 g~~l~~~L~~~~~~~~gv~--i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 208 (540)
T 1chu_A 137 GREVETTLVSKALNHPNIR--VLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS 208 (540)
T ss_dssp -----CCCHHHHHHCTTEE--EECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHHcCCCCE--EEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 45677777788877 6776 899999999987 433 3 334443 464 588999999999965
No 407
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=85.55 E-value=0.44 Score=49.06 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|||+|.+|+-.|..|++.+.+|+++.+++
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~ 369 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKD 369 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46799999999999999999999999999999754
No 408
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=85.50 E-value=0.66 Score=43.03 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.+.||+|+|+|.|+.|.-+|..|.+.+.+|+++.+.
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~ 205 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN 205 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 688999999999999999999999998888877653
No 409
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=85.36 E-value=1.6 Score=43.97 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHHcC---CCCceEeCcEEEEEEEeC--------CeEEEEEc-------------------------
Q psy2343 46 PNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQYE--------DIWEVELS------------------------- 89 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~---l~~~i~~~t~V~~v~~~~--------~~~~V~~~------------------------- 89 (396)
.++..+.++|.+.+..++ +. |+++++|++++.++ ...+|++.
T Consensus 116 l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (665)
T 1pn0_A 116 LHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNL 193 (665)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHH
T ss_pred eeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccc
Confidence 467899999999999887 55 99999999998864 35666553
Q ss_pred -----------------cC--cEEEcCEEEEcccCCC
Q psy2343 90 -----------------NG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 90 -----------------~g--~~~~~d~vvvAtG~~~ 107 (396)
+| +++++|+||-|.|.++
T Consensus 194 ~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S 230 (665)
T 1pn0_A 194 QTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS 230 (665)
T ss_dssp HHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTC
T ss_pred cccccccccccccccCCCCceEEEEeCEEEeccCCCC
Confidence 34 4589999999999976
No 410
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=85.32 E-value=1 Score=39.46 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcC-C-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-G-NSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-G-~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|.|+ | -.|..+|..|++.+.+|.++.|+.
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~ 57 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE 57 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence 478999999999 6 499999999999999999998864
No 411
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=85.30 E-value=0.67 Score=41.41 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
.+++|+|+|+|+|..|.-++..|++.+. +|+++.|+.
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 4679999999999999999999988764 799998874
No 412
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=85.17 E-value=1.9 Score=39.64 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEE-E-ccC--cEEEcCEEEEcccCCC
Q psy2343 46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVE-L-SNG--KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~-~-~~g--~~~~~d~vvvAtG~~~ 107 (396)
..+..+.+.|.+.+...|.. ++++++|+.+..+++..... . .++ .++++|.||.|.|.++
T Consensus 99 i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 99 LERDKFDKHLAALAAKAGAD--VWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp ECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred EEHHHHHHHHHHHHHhcCcE--EeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 36889999999999999987 89999999998876654332 2 223 2478999999999965
No 413
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=85.17 E-value=0.75 Score=38.22 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 478999997 9999999999999888999999975
No 414
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=85.16 E-value=0.57 Score=40.77 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+.+++|.|||.|..|.-+|..|++.+.+|++..|++
T Consensus 15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35678999999999999999999999888999998875
No 415
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=84.87 E-value=0.57 Score=46.42 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+|+|||+|..|+-+|..|++.+.+|+++.+.+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~ 159 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 159 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999989999999875
No 416
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=84.53 E-value=0.45 Score=47.32 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.2
Q ss_pred CeEEEEcCCCcHHHHHHHHhcC------CCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHH------SEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~------~~~V~l~~r~~ 169 (396)
-+|+|||+|.+|+-+|..|++. +.+|.++.+.+
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~ 74 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 74 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence 3699999999999999999998 88999999875
No 417
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=84.46 E-value=0.54 Score=45.35 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~ 168 (396)
.|+|||+|..|+-+|..|++.+.+|.++.+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4899999999999999999888899999886
No 418
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=84.44 E-value=1 Score=46.77 Aligned_cols=38 Identities=21% Similarity=-0.018 Sum_probs=33.8
Q ss_pred eEeCcEEEEEEEeCCeEEEEEcc------CcEEEcCEEEEcccC
Q psy2343 68 SIFNTEVINLEQYEDIWEVELSN------GKKKKYDFIAVCNGA 105 (396)
Q Consensus 68 i~~~t~V~~v~~~~~~~~V~~~~------g~~~~~d~vvvAtG~ 105 (396)
|++|++|++|+..+++++|++.+ +.++.+|+||+|+-.
T Consensus 584 I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl 627 (852)
T 2xag_A 584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL 627 (852)
T ss_dssp EECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCH
T ss_pred EEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCH
Confidence 99999999999998889998865 567999999999875
No 419
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=84.39 E-value=0.6 Score=47.21 Aligned_cols=32 Identities=38% Similarity=0.364 Sum_probs=30.2
Q ss_pred eEEEEcCCCcHHHHHHHHhc-----CCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASH-----HSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~-----~~~~V~l~~r~~ 169 (396)
+|+|||+|.+|+=+|..|++ .+-+|.++.+++
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~ 46 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence 69999999999999999999 889999999875
No 420
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=84.25 E-value=0.87 Score=39.11 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcC-----------------CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-----------------GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-----------------G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+.||+|+|-|| |..|..+|..+++.+.+|+++.|..
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~ 58 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV 58 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 468999999999 6789999999999999999998754
No 421
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=84.16 E-value=0.68 Score=46.36 Aligned_cols=32 Identities=28% Similarity=0.244 Sum_probs=29.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~ 51 (621)
T 2h88_A 20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51 (621)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 79999999999999999999888999999864
No 422
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=84.05 E-value=0.97 Score=41.32 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.|++|.|||.|..|..+|..+...+.+|+.+.|+.
T Consensus 151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~ 188 (330)
T 2gcg_A 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 188 (330)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 46789999999999999999999998888899888764
No 423
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=83.95 E-value=0.57 Score=46.08 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=29.2
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+=+|..+++ +.+|.++.+.+
T Consensus 10 DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp SEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 69999999999999999999 88999999875
No 424
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=83.91 E-value=0.63 Score=46.98 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=29.8
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus 7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~ 38 (660)
T 2bs2_A 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (660)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 69999999999999999999888999999864
No 425
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=83.89 E-value=0.69 Score=42.23 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...++|+|+|.|+ |..|..++..|++.+.+|+.+.|++
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~ 53 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP 53 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3567899999997 9999999999999989999999875
No 426
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=83.55 E-value=0.35 Score=42.38 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
+++++|+|||+|..|..+|..|++.+ .+++++.+..
T Consensus 29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 46789999999999999999999875 5899988764
No 427
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=83.47 E-value=0.94 Score=40.97 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=29.8
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|..|.=+|..|++.+.+|+++.|+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 479999999999999999999888999999864
No 428
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=83.43 E-value=0.82 Score=40.40 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=31.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|+|.|+|..|..++..|.+.+.+|+.+.|++
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 689999999999999999999999999999975
No 429
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=83.42 E-value=3.8 Score=41.13 Aligned_cols=63 Identities=11% Similarity=-0.041 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHc-CC-CCceEeCcEEEEEEEeCC---eE-EEEE---ccCc--EEEcCEEEEcccCCCCCCCC
Q psy2343 48 HSMMLDYLRSYAKKF-DV-YNHSIFNTEVINLEQYED---IW-EVEL---SNGK--KKKYDFIAVCNGAQRVARYP 112 (396)
Q Consensus 48 ~~~~~~Yl~~~~~~~-~l-~~~i~~~t~V~~v~~~~~---~~-~V~~---~~g~--~~~~d~vvvAtG~~~~p~~P 112 (396)
+..+...|...+++. ++ . |+++++|+++..+++ +. -|.. .+|+ .+.+++||+|||.++.-..|
T Consensus 150 g~~~~~~l~~~~~~~~gv~~--i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~ 223 (643)
T 1jnr_A 150 GESYKPIIAEAAKMAVGEEN--IYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRP 223 (643)
T ss_dssp ETTHHHHHHHHHHHHHCGGG--EECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred cHHHHHHHHHHHHhcCCCcE--EEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccC
Confidence 345677778888777 87 6 899999999987644 32 2322 4554 47899999999997753333
No 430
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=83.39 E-value=0.7 Score=44.00 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~ 39 (433)
T 1d5t_A 7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP 39 (433)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 579999999999999999999999999999864
No 431
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=83.33 E-value=1 Score=39.13 Aligned_cols=41 Identities=29% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCCCCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 129 KSPDQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 129 ~~~~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.....+++|+|+|.|+ |..|..+|..|++.+.+|+++.|+.
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~ 53 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 53 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3445788999999985 6789999999999988999998863
No 432
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=83.29 E-value=1.3 Score=41.18 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+|+|+|+|+|..|..++..+.+.+-+|.++.+.+
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~ 45 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE 45 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4568999999999999999999999998998887654
No 433
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=83.16 E-value=0.99 Score=41.31 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus 160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~ 197 (333)
T 3ba1_A 160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK 197 (333)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 46789999999999999999999999888899888765
No 434
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=83.13 E-value=0.98 Score=41.36 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.|++|.|||.|..|..+|..+...+.+|+.+.|++
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~ 179 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR 179 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 46889999999999999999999998888898888765
No 435
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=83.04 E-value=1.1 Score=40.59 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus 135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~ 172 (315)
T 3pp8_A 135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR 172 (315)
T ss_dssp CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 46789999999999999999999999988999988865
No 436
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=82.99 E-value=0.97 Score=41.39 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.|++|.|||.|..|..+|..++..+.+|+.+.|++
T Consensus 146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~ 183 (334)
T 2dbq_A 146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR 183 (334)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence 46789999999999999999999999888898888764
No 437
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=82.91 E-value=2.1 Score=38.30 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=31.1
Q ss_pred CCCCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++||+++||| +...|.=+|..|.+....||+++.+.
T Consensus 176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T 213 (303)
T 4b4u_A 176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT 213 (303)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC
Confidence 56899999999 55668889999998888999988654
No 438
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=82.83 E-value=0.82 Score=40.73 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|.|||+|..|.-+|..++..+.+|+++.|++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999998864
No 439
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=82.68 E-value=1.1 Score=39.97 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=32.6
Q ss_pred CCCCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+++|+| +|-.|..++..|++.+.+|+++.|+.
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 46789999999 89999999999999887899998864
No 440
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=82.61 E-value=0.75 Score=46.08 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..|+|||+|..|+-+|..|++.+.+|+++.+.+
T Consensus 47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~ 79 (623)
T 3pl8_A 47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE 79 (623)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence 379999999999999999999999999999865
No 441
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=82.52 E-value=0.74 Score=44.23 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~ 169 (396)
..+|+|||+|.+|+-+|..|++.+. +|+++.+++
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~ 38 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 38 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 3579999999999999999999886 899998763
No 442
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=82.46 E-value=1.6 Score=38.50 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCCeEEEEcC---CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGA---GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~---G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++|+|+|.|+ |-.|..+|..|++.+.+|+++.|+.
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~ 42 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 42 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999997 5899999999999999999998875
No 443
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=82.29 E-value=1.1 Score=41.29 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r 167 (396)
+++||+|+|+|.|+.|..+|..+...+.+|.++.+
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~ 206 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT 206 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeC
Confidence 68999999999999999999999999888886654
No 444
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=82.22 E-value=0.93 Score=41.17 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+|+|||+|..|.=+|..|++.+.+|+++.|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 589999999999999999999888999999864
No 445
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=82.18 E-value=1.4 Score=40.23 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++.||+|.|||.|..|..+|..+...+-+|+.+.|++
T Consensus 132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 170 (324)
T 3evt_A 132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTG 170 (324)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCc
Confidence 346789999999999999999999999888999888865
No 446
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=82.13 E-value=0.9 Score=43.11 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+.||+|+|||.|..|..+|..+...+.+|++..+.+
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp 280 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP 280 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36789999999999999999999998888898887654
No 447
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=82.11 E-value=1.4 Score=38.49 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCCCCCeEEEEcC---CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 131 PDQIRNKRVLVVGA---GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 131 ~~~~~~k~VvVVG~---G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+++|+|+|.|+ |-.|..+|..|++.+.+|.++.|+.
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~ 50 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD 50 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence 34678999999996 4789999999999999999998864
No 448
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=82.05 E-value=0.89 Score=43.72 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+.||+|+|+|+|..|.-+|..|+..+.+|+++.+.+
T Consensus 262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4789999999999999999999999988998887754
No 449
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=81.82 E-value=1.1 Score=43.25 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
.+++++|+|+|+|..|.-++..|++. +.+|+++.|+.
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~ 57 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL 57 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 56789999999999999999999987 56899998864
No 450
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=81.77 E-value=1.5 Score=39.62 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++.|++|.|||.|..|..+|..+...+-+|+...|++
T Consensus 121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~ 157 (303)
T 1qp8_A 121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 157 (303)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 6789999999999999999999998888898888765
No 451
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=81.73 E-value=1.2 Score=40.29 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.|++|.|||.|..|..+|..+...+.+|+.+.|++
T Consensus 138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~ 175 (307)
T 1wwk_A 138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175 (307)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 46789999999999999999999998888898888764
No 452
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=81.65 E-value=1.3 Score=40.58 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeC-----------------CeEEE---EE------cc--------C
Q psy2343 47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-----------------DIWEV---EL------SN--------G 91 (396)
Q Consensus 47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~-----------------~~~~V---~~------~~--------g 91 (396)
+..++.+.|...+..+ ++. ++++++|+++..++ +..+| .+ .+ .
T Consensus 158 ~~~d~~~~L~~~a~~~~gV~--i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~ 235 (344)
T 3jsk_A 158 HAALFTSTVLSKVLQRPNVK--LFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDP 235 (344)
T ss_dssp CHHHHHHHHHHHHHTCTTEE--EEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBC
T ss_pred cHHHHHHHHHHHHHhCCCCE--EEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCc
Confidence 3567777777777764 766 88999999987653 21222 11 11 2
Q ss_pred cEEEcCEEEEcccCCC
Q psy2343 92 KKKKYDFIAVCNGAQR 107 (396)
Q Consensus 92 ~~~~~d~vvvAtG~~~ 107 (396)
.++.+++||+|||+.+
T Consensus 236 ~~i~Ak~VV~ATG~~s 251 (344)
T 3jsk_A 236 NTINAPVIISTTGHDG 251 (344)
T ss_dssp EEEECSEEEECCCSSS
T ss_pred eEEEcCEEEECCCCCc
Confidence 3589999999999943
No 453
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=81.56 E-value=1.5 Score=38.86 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcC-CC--cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-GN--SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-G~--sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|.|+|.|+ |. .|..+|..|++.+.+|.++.|+.
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 62 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ 62 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence 567999999996 44 89999999999988999998864
No 454
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=81.56 E-value=1.2 Score=40.35 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+..|++|.|||.|..|..+|..+...+.+|+.+.|++
T Consensus 138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~ 175 (313)
T 2ekl_A 138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175 (313)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 46789999999999999999999998888898887764
No 455
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=81.50 E-value=0.98 Score=42.67 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+.||+|+|+|.|..|..+|..+...+.+|++..+.+
T Consensus 216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp 253 (435)
T 3gvp_A 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP 253 (435)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35789999999999999999999998888898887754
No 456
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=81.45 E-value=0.98 Score=42.74 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+.||+|+|||.|..|..+|..|...+.+|+++.+.+
T Consensus 207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p 244 (436)
T 3h9u_A 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP 244 (436)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 46789999999999999999999999988898887754
No 457
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=81.43 E-value=0.76 Score=45.86 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=29.4
Q ss_pred eEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~ 169 (396)
.|+|||+|.+|+-+|..|++.+ .+|.++.+.+
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 6999999999999999999987 8999999864
No 458
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=81.40 E-value=1.6 Score=38.14 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCC-C--cHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAG-N--SGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G-~--sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++||+|+|.|++ . .|..+|..|++.+.+|.++.|+.
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 4679999999974 4 79999999999999999988764
No 459
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=81.33 E-value=1.6 Score=39.00 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++||+|+|.|++ -.|..+|..|++.+.+|.++.|+.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~ 66 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE 66 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence 45789999999986 789999999999999999998864
No 460
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=81.28 E-value=1.3 Score=40.21 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.|++|.|||.|..|..+|..+...+-+|+...|++
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~ 177 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP 177 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence 36789999999999999999999998888898888765
No 461
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=81.21 E-value=1.1 Score=40.74 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.2
Q ss_pred CCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence 5789999997 9999999999999888999999875
No 462
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=81.17 E-value=1.3 Score=41.41 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+.+++|+|+|+|..|.-+|..+...+.+|+.+.|++
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4789999999999999999999988877899988764
No 463
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=81.14 E-value=1.3 Score=39.26 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~ 169 (396)
+.++|+++|+|+|-+|-=++..|++. .++|+++.|+.
T Consensus 122 ~~~~~~~lilGaGGaarai~~aL~~~g~~~i~i~nRt~ 159 (269)
T 3tum_A 122 EPAGKRALVIGCGGVGSAIAYALAEAGIASITLCDPST 159 (269)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred CcccCeEEEEecHHHHHHHHHHHHHhCCCeEEEeCCCH
Confidence 45789999999999999999999876 47899998864
No 464
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=81.13 E-value=0.92 Score=41.21 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++|+|||+|..|..+|..++..+-+|++....+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999998754
No 465
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=81.08 E-value=5 Score=38.03 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.|.+..|||.|..|.=+|..|++.+.+|+.+.+.+
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~ 44 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ 44 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999999999999999999999999998875
No 466
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=81.06 E-value=1.7 Score=38.85 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCCCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 129 KSPDQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 129 ~~~~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.....+++|+|+|.|+ |..|..+|..|++.+.+|+++.|+.
T Consensus 11 ~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~ 52 (303)
T 1yxm_A 11 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL 52 (303)
T ss_dssp BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3344678999999984 6778999999999988999998864
No 467
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=81.02 E-value=1.1 Score=39.28 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEecc
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRR 168 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~ 168 (396)
+++++|+|||.|..|.++|..|+..+ .+++++.+.
T Consensus 26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999874 578888664
No 468
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=80.96 E-value=1 Score=40.41 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
++|.|||+|..|.-+|..+++.+.+|+++.|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999888999998864
No 469
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=80.89 E-value=1.4 Score=39.25 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=30.6
Q ss_pred CCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 136 NKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 578999996 9999999999999888999999875
No 470
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=80.88 E-value=1.8 Score=37.83 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++||.++|-|++ -.|..+|..|++.+.+|.+..|+.
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~ 42 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE 42 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999964 478899999999999999999875
No 471
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=80.87 E-value=1 Score=42.44 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+.+++|+|+|+|..|.-++..+...+.+|+++.|++
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 568999999999999999999888877899998875
No 472
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=80.78 E-value=1.2 Score=39.90 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343 134 IRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRGY 170 (396)
Q Consensus 134 ~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~~ 170 (396)
..+++|+|.|+ |..|..++..|++.+.+|+.+.|++.
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 35789999998 99999999999999899999999763
No 473
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=80.73 E-value=1.4 Score=40.33 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus 167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~ 204 (340)
T 4dgs_A 167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRST 204 (340)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 46789999999999999999999999888898888765
No 474
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=80.71 E-value=1.3 Score=41.20 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++++|+|+|+|..|..+|..+...+.+|+++.|++
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4678999999999999999999998888999998864
No 475
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=80.62 E-value=0.96 Score=42.09 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+++|+|||+|..|.-+|..+...+.+|+++.|++
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999999999999999988888999998875
No 476
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=80.62 E-value=1.6 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+++|+|+|+|..|--++..|+..+ ++|+++.|+.
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~ 153 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 153 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4689999999999999999998875 5899999874
No 477
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=80.61 E-value=0.8 Score=40.66 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++++|+|||+|..|.-+|..|.+.+.+|+++.|++
T Consensus 126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~ 162 (275)
T 2hk9_A 126 EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK 162 (275)
T ss_dssp TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4678999999999999999999988766888888764
No 478
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=80.52 E-value=1 Score=45.39 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=29.0
Q ss_pred eEEEEcCCCcHHHHHHHHh---c-CCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDAS---H-HSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~---~-~~~~V~l~~r~~ 169 (396)
.|+|||+|.+|+=+|..++ + .+.+|.++.+.+
T Consensus 24 DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~ 59 (643)
T 1jnr_A 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59 (643)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence 6999999999999999999 5 778999999865
No 479
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=80.50 E-value=1.4 Score=40.13 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus 136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~ 173 (324)
T 3hg7_A 136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG 173 (324)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence 46789999999999999999999999988999888765
No 480
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=80.35 E-value=1.1 Score=41.65 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~ 169 (396)
.+.+.+|+|+|+|..|.-+|..|...+ ++|+++.|++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G 226 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG 226 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 457789999999999999999988865 5899999975
No 481
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=80.33 E-value=1.4 Score=41.24 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
...+|+|+|+|+|.+|..++..+.+.+-+|.++...+
T Consensus 11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~ 47 (389)
T 3q2o_A 11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK 47 (389)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3578999999999999999999999998888887653
No 482
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=80.31 E-value=1.3 Score=37.68 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++|+|||+|..|.-+|..|++.+.+|+++.|++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999998888899988864
No 483
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=80.29 E-value=0.79 Score=38.95 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=29.6
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+|+|+|+|..|..+|..|.+.+.+|+++.+.+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999989999999865
No 484
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=80.15 E-value=1.3 Score=40.95 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=29.9
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
|+|+|+|||..|.+++..+.+.+-+|+++...+
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~ 34 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP 34 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 799999999999999999999999999987654
No 485
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=80.10 E-value=1.2 Score=42.96 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..+.||+|+|||.|..|..+|..+...+.+|+...|.+
T Consensus 273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~ 310 (494)
T 3d64_A 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDP 310 (494)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35789999999999999999999999988999988764
No 486
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=79.85 E-value=1.2 Score=39.77 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+.+.|++
T Consensus 118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~ 155 (290)
T 3gvx_A 118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSS 155 (290)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSC
T ss_pred eeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccc
Confidence 35789999999999999999999999888999988865
No 487
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=79.69 E-value=1.6 Score=39.61 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec-cC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR-RG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r-~~ 169 (396)
.++.|++|.|||.|..|..+|..+...+.+|+.+.| ++
T Consensus 142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~ 180 (320)
T 1gdh_A 142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180 (320)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 367899999999999999999999988888988887 54
No 488
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=79.66 E-value=1.6 Score=40.13 Aligned_cols=39 Identities=21% Similarity=0.081 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEEcCCCcHHHHHHHHh-cCCCcEEEEeccC
Q psy2343 131 PDQIRNKRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRG 169 (396)
Q Consensus 131 ~~~~~~k~VvVVG~G~sa~d~a~~l~-~~~~~V~l~~r~~ 169 (396)
..++.|++|.|||.|..|..+|..+. ..+-+|+.+.|++
T Consensus 158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~ 197 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP 197 (348)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 34688999999999999999999998 8888888887764
No 489
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=79.61 E-value=1.3 Score=41.05 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
+-++++|+|+|+|..|.-+|..|++. .+|++..|+.
T Consensus 13 ~~~~~~v~IiGaG~iG~~ia~~L~~~-~~V~V~~R~~ 48 (365)
T 2z2v_A 13 EGRHMKVLILGAGNIGRAIAWDLKDE-FDVYIGDVNN 48 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTTT-SEEEEEESCH
T ss_pred cCCCCeEEEEcCCHHHHHHHHHHHcC-CeEEEEECCH
Confidence 34689999999999999999999988 7899998864
No 490
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=79.60 E-value=1.7 Score=37.33 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|.|+ |..|..+|..|++.+.+|+++.|++
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~ 41 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 41 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999996 7889999999999988999998864
No 491
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=79.55 E-value=0.56 Score=47.59 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHhcCC--------CcEEEEeccC
Q psy2343 136 NKRVLVVGAGNSGCDIAVDASHHS--------EKVYHSTRRG 169 (396)
Q Consensus 136 ~k~VvVVG~G~sa~d~a~~l~~~~--------~~V~l~~r~~ 169 (396)
.++|+|||+|.+|+-+|..|.+.+ .+|+++.+++
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~ 97 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP 97 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence 468999999999999999998876 7899998776
No 492
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=79.39 E-value=1.7 Score=38.00 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcC---CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA---GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~---G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|.|+ |-.|..+|..|++.+.+|+++.|+.
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 44 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 357899999997 5899999999999888999998864
No 493
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=79.31 E-value=1.7 Score=37.27 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.+++|+|+|.|+ |..|..+|..|++.+.+|+++.|+.
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~ 41 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999996 7899999999999988999988864
No 494
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=79.13 E-value=1.6 Score=39.93 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+.+.|++
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~ 178 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA 178 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSC
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 46789999999999999999999998888898888764
No 495
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=79.04 E-value=1.8 Score=39.84 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||-|..|..+|..+...+-+|....|++
T Consensus 169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~ 206 (345)
T 4g2n_A 169 MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206 (345)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCC
Confidence 46789999999999999999999999888898888764
No 496
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=79.00 E-value=3.8 Score=39.25 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCC
Q psy2343 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD 216 (396)
Q Consensus 137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (396)
|+|+|+|||..|.-+|..|.+. .+|.++.+.. .-.+.+...
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~~-~~v~iIE~d~-------------------------------~r~~~la~~------- 276 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQT-YSVKLIERNL-------------------------------QRAEKLSEE------- 276 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT-SEEEEEESCH-------------------------------HHHHHHHHH-------
T ss_pred cEEEEEcchHHHHHHHHHhhhc-CceEEEecCH-------------------------------HHHHHHHHH-------
Q ss_pred CCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCc---------EecCcEEEEccC
Q psy2343 217 YGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDT---------HIEVDTIIYATG 278 (396)
Q Consensus 217 ~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~---------~~~~D~VI~aTG 278 (396)
++...|.-.||+ ..++|++|.+||
T Consensus 277 --------------------------------------l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~ 309 (461)
T 4g65_A 277 --------------------------------------LENTIVFCGDAADQELLTEENIDQVDVFIALTN 309 (461)
T ss_dssp --------------------------------------CTTSEEEESCTTCHHHHHHTTGGGCSEEEECCS
T ss_pred --------------------------------------CCCceEEeccccchhhHhhcCchhhcEEEEccc
No 497
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=78.96 E-value=0.87 Score=44.04 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
..+.+-|.+.+.+.++. |+++++|++|..+++ .|++.+|+++.||+||.++-.
T Consensus 222 ~~l~~~l~~~l~~~g~~--i~~~~~V~~I~~~~~--~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTR--FGEKGKVTKVNANNK--TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEE--ESGGGCEEEEETTTT--EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCee--eecceEEEEEEccCC--EEEEcCCCEEECCEEEECCCH
Confidence 34555555555555555 889999999997655 466789999999999987654
No 498
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=78.78 E-value=1.8 Score=39.57 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
.++.||+|.|||.|..|..+|..+...+-+|+.+.|+.
T Consensus 161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 198 (335)
T 2g76_A 161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198 (335)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCc
Confidence 46789999999999999999999998888888887754
No 499
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=78.74 E-value=2.8 Score=40.44 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCCceEeCc--EEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343 51 MLDYLRSYAKKFDVYNHSIFNT--EVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 105 (396)
Q Consensus 51 ~~~Yl~~~~~~~~l~~~i~~~t--~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~ 105 (396)
+....+..++..+- ..|++++ +|++|++++++|+ +.+|+++.||+||+|+..
T Consensus 215 ~~~l~~~la~~l~~-~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~ 268 (484)
T 4dsg_A 215 TGIIYQAIKEKLPS-EKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPF 268 (484)
T ss_dssp THHHHHHHHHHSCG-GGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCH
T ss_pred HHHHHHHHHhhhhh-CeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCH
Confidence 44455566666532 1599994 6999998777654 577888999999999976
No 500
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=78.71 E-value=1.8 Score=37.25 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343 132 DQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 169 (396)
Q Consensus 132 ~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~ 169 (396)
..++||.|+|.|+ |-.|..+|..|++.+.+|.++.|+.
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence 4578999999996 6778999999999988999998864
Done!