RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2343
(396 letters)
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 253 bits (647), Expect = 1e-81
Identities = 67/351 (19%), Positives = 121/351 (34%), Gaps = 39/351 (11%)
Query: 2 ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
E+ GG W + SLHL SP + +P +PMP + YP + +L YL Y +K
Sbjct: 35 EASPGGAWQ------HAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQK 88
Query: 62 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FS 119
+ + V + + + V +G++ + G A P Y G F+
Sbjct: 89 YALPVL--RPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFA 146
Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
G LHS Y +P RV ++G GNSG I + S +E + + DG
Sbjct: 147 GIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDV-DG 205
Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
+ + + + G + P +M +L
Sbjct: 206 RVLFERATER----------------------WKAQQEGREPDLPPGGFGDIVMVPPVLD 243
Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLG-IP 298
G + + + + D T D +I+ TG+ + L G +
Sbjct: 244 ARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVE 303
Query: 299 DLFIHIAPRNLDNIFFFGFVN----AAAGLGDGLRLQGQFIRSYIQAFIRK 345
+ + +++ G+ + A+A L G+ + + A+
Sbjct: 304 VDGSGLRALAVPSVWLLGYGDWNGMASATLI-GVTRYAREAVRQVTAYCAD 353
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 158 bits (402), Expect = 1e-44
Identities = 46/313 (14%), Positives = 95/313 (30%), Gaps = 71/313 (22%)
Query: 18 VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINL 77
+Y L +P D +P+ + +Y R YA+ + T+V+++
Sbjct: 84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDI 141
Query: 78 EQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYSG------YFSGEILHS 125
E+ + W V K +D +++CNG V PN G G +LHS
Sbjct: 142 EKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHS 201
Query: 126 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 185
++ P+ + VLVVG +S D+ + ++ + + G +
Sbjct: 202 SLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ--------NES 253
Query: 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGD 245
+ Q + I + + + +++Y G+
Sbjct: 254 LQQ-----------VPEITKFD----------PTTREIYLKGGKVLSNIDRVIYCTGYLY 292
Query: 246 ILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA 305
+P F ++ + + +++ HI
Sbjct: 293 SVP-------------FPSLAKLKSPETKLIDDGSH---------------VHNVYQHIF 324
Query: 306 PRNLDNIFFFGFV 318
+ F G
Sbjct: 325 YIPDPTLAFVGLA 337
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 141 bits (356), Expect = 8e-38
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 3 SDLGGVWN----------SQASCGRVYPSLHLISPKFNTQVPDYPMPDNY----PVYPNH 48
+D GG WN + +Y L PK + DY +++ YP
Sbjct: 41 ADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPR 100
Query: 49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKK-----YDFIAV 101
++ DY++ +K V + FNT V ++E ED + V + + +D++
Sbjct: 101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC 160
Query: 102 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI +
Sbjct: 161 CTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYG 220
Query: 160 EKVYHSTRRGYHYYPKFID 178
K S R K+ +
Sbjct: 221 AKKLISCYRTAPMGYKWPE 239
Score = 51.1 bits (122), Expect = 3e-07
Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE 269
+ + D G + + + + + + + ++ ++ +F D + +
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEK 264
Query: 270 VDTIIYATGYNRHFPFIDKEKLEW---KLGIPDLFIHIAPRNLDNIFFFGFV 318
VD II TGY HFPF++ + +L +L+ + + F+ G
Sbjct: 265 VDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQ 316
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 117 bits (294), Expect = 8e-30
Identities = 50/354 (14%), Positives = 94/354 (26%), Gaps = 71/354 (20%)
Query: 2 ESDLGGVWNSQASCGRVYP-SLHLISPKFNTQVP-----------DYPMPDNYPVYPNHS 49
+ +G + + +P S I+P F + P + +
Sbjct: 36 KGTVGHSF-------KHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGE 88
Query: 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
+YL+ A +++ + NT V N+ + + + + D+I V G
Sbjct: 89 TYAEYLQVVANHYEL--NIFENTVVTNISADDAYYTIATTTETYH-ADYIFVATGDYNFP 145
Query: 110 RYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169
+ P G +H + + D + +V+G SG D A + + + T
Sbjct: 146 KKPFKYG------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT 199
Query: 170 YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAA 229
P + Q + G + +
Sbjct: 200 GLNDPDADPSVRLSPYTRQRLGNV---------------------IKQGARIEMNVHYTV 238
Query: 230 HPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 289
I + YHI + I ATG++ I ++
Sbjct: 239 KDIDFNNGQYHISFDS------------------GQSVHTPHEPILATGFDATKNPIVQQ 280
Query: 290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFV----NAAAGLGDGLRLQGQFIRSYI 339
L H NIF G NA R + + +
Sbjct: 281 LFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLL 334
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 93.6 bits (232), Expect = 5e-21
Identities = 58/327 (17%), Positives = 105/327 (32%), Gaps = 46/327 (14%)
Query: 36 YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL------- 88
+ YP DYLR A F S + EV+ +E +VE
Sbjct: 114 VDFINLGTFYPCRMEFNDYLRWVASHFQ--EQSRYGEEVLRIEPMLSAGQVEALRVISRN 171
Query: 89 SNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDY------KSPDQIRNKRVL 140
++G++ A+ R P G + H Y + + ++
Sbjct: 172 ADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIA 231
Query: 141 VVGAGNSGCDIAVD--ASHHSEKVYHSTRRGYHYYP----KFIDGKPTPQWMLQLGNKFS 194
++G G S + +D S+ S + R P F++ P++ + +S
Sbjct: 232 IIGGGQSAAEAFIDLNDSYPSVQADMILRA-SALKPADDSPFVNEVFAPKFTDLI---YS 287
Query: 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKN 254
+ + + + + VD L ++ + + Q + I ++
Sbjct: 288 REHAERERLLREYHNTNYSVVDTDL------IERIYGVFYRQKVSGIPRHAFRCMTTVER 341
Query: 255 L----NGNIVHFVD-----DTHIEVDTIIYATGYNRHFP--FID--KEKLEWKLGIPDLF 301
G + D + D +I ATGY R ++ E L D
Sbjct: 342 ATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYR 401
Query: 302 IHIAPRNLDNIFFFGFVNAAAGLGDGL 328
+ R I+ GF A+ GL D L
Sbjct: 402 LQTDERCKVAIYAQGFSQASHGLSDTL 428
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 70.7 bits (174), Expect = 2e-13
Identities = 58/223 (26%), Positives = 75/223 (33%), Gaps = 58/223 (26%)
Query: 3 SDLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM---------M 51
D+GG W N YP +T+ Y + P M
Sbjct: 42 EDVGGTWYWNR-------YPGCR-----LDTESYAYGYFALKGIIPEWEWSENFASQPEM 89
Query: 52 LDYLRSYAKKFDVYNHSIFNTEVINLEQYED---IWEVELSNGKKKKYDFIAVCNGAQRV 108
L Y+ A DV H FNT V Y + +WEV L N + F+ G
Sbjct: 90 LRYVNRAADAMDVRKHYRFNTRVTAAR-YVENDRLWEVTLDNEEVVTCRFLISATGPLSA 148
Query: 109 ARYPNYSGY--FSGEILHS----MDYKSPDQ---IRNKRVLVVGAGNSG----CDIAVDA 155
+R P+ G F GE HS D + + KRV V+G G +G A A
Sbjct: 149 SRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETA 208
Query: 156 SHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
+Y R TP W LGN SKE+
Sbjct: 209 KE----LYVFQR--------------TPNWCTPLGNSPMSKEK 233
Score = 33.7 bits (78), Expect = 0.10
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 263 VDDTHIEVDTIIYATGYN------RHFPFI--DKEKL--EWKLGIPDLFIHIAPRNLDNI 312
D ++D IIYATG++ D +L W G P ++ + R N
Sbjct: 373 TADAAYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWAEG-PSTYLGLQARGFPNF 431
Query: 313 FFFGFVNAAAGLGDGLRL---QGQFIRSYIQ 340
F + + + Q +++ I
Sbjct: 432 FTLVGPHNGSTFCNVGVCGGLQAEWVLRMIS 462
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 69.9 bits (172), Expect = 3e-13
Identities = 49/221 (22%), Positives = 74/221 (33%), Gaps = 52/221 (23%)
Query: 3 SDLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDY-----PMPDNYPV----YPNHSMM 51
S +GGVW N YP + + DY P + Y +
Sbjct: 54 SGVGGVWYWNR-------YPGAR-----CDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101
Query: 52 LDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
L YL A +FD+ F+T V + + W V G + F+ V G A
Sbjct: 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNA 161
Query: 110 RYPNYSGY--FSGEILHSM--DYKSPDQIRNKRVLVVGAGNSGC----DIAVDASHHSEK 161
P + G F+G+I+H+ + D KRV V+G G+SG IA A
Sbjct: 162 NTPAFDGLDRFTGDIVHTARWPHDGVD-FTGKRVGVIGTGSSGIQSIPIIAEQAEQ---- 216
Query: 162 VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202
++ R + + + GN
Sbjct: 217 LFVFQR--------------SANYSIPAGNVPLDDATRAEQ 243
Score = 35.6 bits (83), Expect = 0.028
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 263 VDDTHIEVDTIIYATGY 279
H ++D I+ ATG+
Sbjct: 378 TTGAHYDLDMIVLATGF 394
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 69.9 bits (172), Expect = 4e-13
Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 48/215 (22%)
Query: 3 SDLGGVW--NSQASCGRVYPSL------HLISPKFNTQVPDYPMPDNYP-VYPNHSMMLD 53
D+GGVW N YP F+ + N+ Y + +L
Sbjct: 49 GDVGGVWYWNR-------YPGARCDIESIEYCYSFS---EEVLQEWNWTERYASQPEILR 98
Query: 54 YLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111
Y+ A KFD+ + F+T V + + W V+ ++G + + ++ + +G V +
Sbjct: 99 YINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQL 158
Query: 112 PNYSGY--FSGEILHSM--DYKSPDQIRNKRVLVVGAGNSG----CDIAVDASHHSEKVY 163
PN+ G F+G + H+ ++ D +RV V+G G+SG IA A+ ++
Sbjct: 159 PNFPGLKDFAGNLYHTGNWPHEPVD-FSGQRVGVIGTGSSGIQVSPQIAKQAAE----LF 213
Query: 164 HSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
R TP + + N E
Sbjct: 214 VFQR--------------TPHFAVPARNAPLDPEF 234
Score = 34.5 bits (80), Expect = 0.053
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 263 VDDTHIEVDTIIYATGYN 280
+ E+D+++ ATG++
Sbjct: 373 TSEREYELDSLVLATGFD 390
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 69.1 bits (170), Expect = 5e-13
Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 51/216 (23%)
Query: 3 SDLGGVW--NSQASCGRVYPSL------HLISPKF---NTQVPDYPMPDNYPVYPNHSMM 51
GG W N YP HL F Q + Y +
Sbjct: 42 DGPGGTWYWNR-------YPGALSDTESHLYRFSFDRDLLQESTWKT-----TYITQPEI 89
Query: 52 LDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
L+YL +FD+ H F TEV + E++WEV +G+ + ++ G
Sbjct: 90 LEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAI 149
Query: 110 RYPNYSGY--FSGEILHSMDY-KSPDQIRNKRVLVVGAGNSG----CDIAVDASHHSEKV 162
+PN G F GE +H+ + + + +RV V+G G++G +A + H +
Sbjct: 150 NFPNLPGLDTFEGETIHTAAWPEGKS-LAGRRVGVIGTGSTGQQVITSLAPEVEH----L 204
Query: 163 YHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
R TPQ+ + +GN+ + E+
Sbjct: 205 TVFVR--------------TPQYSVPVGNRPVNPEQ 226
Score = 34.1 bits (79), Expect = 0.084
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 260 VHFVDDTHIEVDTIIYATGY 279
V D E+D +++ATG+
Sbjct: 363 VVTEDGVLHELDVLVFATGF 382
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 53.8 bits (130), Expect = 3e-08
Identities = 41/275 (14%), Positives = 93/275 (33%), Gaps = 71/275 (25%)
Query: 59 AKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYS 115
A++++ N V + +D +E + G + IA GA + P
Sbjct: 84 AERYNPDVV--LNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLG 141
Query: 116 G--YFSGEILHSMDY--KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171
+ +G ++ Y KS + + KRV++VG G+S D V ++ V R
Sbjct: 142 NIDHLTGSSVY---YAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG--- 195
Query: 172 YYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHP 231
++F +T +V + +D
Sbjct: 196 -------------------HEFQGHGKT---AHEVERARANGTIDV-------------- 219
Query: 232 IMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL 291
+ +++ +L + +++ +G+ +E D ++ G+ + +
Sbjct: 220 YLETEVASIEESNGVLTRVHLRSSDGSK------WTVEADRLLILIGFKSNLGPL----A 269
Query: 292 EWKLGIPDLFIHIAPR---NLDNIFFFGFVNAAAG 323
W L + + + + ++D ++ AAG
Sbjct: 270 RWDLELYENALVVDSHMKTSVDGLY-------AAG 297
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 50.3 bits (121), Expect = 4e-07
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK--KKYDFIAVCNGA--QRVARYPNY 114
F+ LE+ D+++V S G K IA GA R P
Sbjct: 75 VAPFNPVYS--LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGE 132
Query: 115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
+ + +++ KS + + KRVL+VG G+S D A++ + ++ H RR
Sbjct: 133 REFEGRGVYYAV--KSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIH--RR 184
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 46.8 bits (112), Expect = 6e-06
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK--KYDFIAVCNGAQRVARYPNYSG 116
KFD V ++E+ D ++N + K I NGA R
Sbjct: 77 MAKFDQTIC--LEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGA-FKPRKLELEN 133
Query: 117 Y--FSGEILHSMDY--KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
+ G+ LH Y + +RV ++G G+S D A+ +++V H RR
Sbjct: 134 AEQYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIH--RR 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 48/396 (12%), Positives = 107/396 (27%), Gaps = 107/396 (27%)
Query: 45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYD-FIAVCN 103
Y ++ + ++ FD + +++ E+ + I + + F + +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLS 73
Query: 104 -GAQRVARY------PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 156
+ V ++ NY F + + + + P +
Sbjct: 74 KQEEMVQKFVEEVLRINYK--FLMSPIKT-EQRQPSMMT--------------------- 109
Query: 157 HHSEKVYHSTR-RGYHYYPKFIDGK-PTPQWMLQLGNKFSSKEETMAYI---------KQ 205
++Y R R Y+ F Q L+L + + K
Sbjct: 110 ----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKT 164
Query: 206 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY-HIGHGDILPKDDIKNLNGNIVHFVD 264
+A + Y ++ M+ +I + ++ + + P+ ++ L +++ +D
Sbjct: 165 W--VALDVCLSYKVQC----------KMDFKIFWLNLKNCNS-PETVLEMLQ-KLLYQID 210
Query: 265 DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN----LDNI-------- 312
H + + L N L N+
Sbjct: 211 PNWTSRSDHSSNIKLRIH---------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 313 FFFG----FVNAAAGLGDGLRLQGQFIRSYIQAFI----RKSKGYL-KFLNAKKNDNPDL 363
F + D L S + + K L K+L+ + D P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 364 GQDY----------FIDSHRHLWEVDFWKFIKCARM 389
I W D WK + C ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKL 355
Score = 34.4 bits (78), Expect = 0.079
Identities = 62/384 (16%), Positives = 109/384 (28%), Gaps = 128/384 (33%)
Query: 21 SLHLISPKFNTQVPDYP--MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE 78
L+ + + D P + P S++ + +R +D + H +N +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKH-------VNCD 353
Query: 79 QYEDIWEVELSNGK----KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL----HSMDYKS 130
+ I E L+ + +K +D ++V +P S + +L +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV---------FPP-SAHIPTILLSLIWFDVIKSD 403
Query: 131 PDQIRN---KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 187
+ N K LV EK + +
Sbjct: 404 VMVVVNKLHKYSLV------------------EKQPKESTISIP--------------SI 431
Query: 188 QLGNKFSSKEETMAYIKQVFKLAGFDGVD-YGLKKPDHPLDAAHPIMNSQILYHIGHGDI 246
L + K E + + VD Y + K D P ++ HIGH
Sbjct: 432 YL--ELKVKLENEYALHRSI-------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--- 479
Query: 247 LPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP--FIDKEKLEWKLGIPDLFIHI 304
H + H E T+ F F+D LE K+ D
Sbjct: 480 --------------HLKNIEHPERMTL---------FRMVFLDFRFLEQKI-RHDSTAWN 515
Query: 305 APRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFL-----NAKKND 359
A ++ N L L+ +I + R L FL N +
Sbjct: 516 ASGSILNT-----------LQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 360 NPDLGQ--------DYFIDSHRHL 375
DL + F ++H+ +
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQV 587
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 43.2 bits (103), Expect = 8e-05
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 41/146 (28%)
Query: 40 DNYPVYPNHS---MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVELSNGKKKK 95
+NY P + L+ + ++DV S +++I + ++E ++G K
Sbjct: 45 ENYISVPKTEGQKLAGA-LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLK 103
Query: 96 YDFIAVCNGAQRVARYPN------YSG------------YFSGEILHSMDYKSPDQIRNK 137
I V GA+ R N Y F + K
Sbjct: 104 ARSIIVATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF----------------KGK 145
Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVY 163
RV V+G GNSG + A+D + E V
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEHVT 171
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 43.1 bits (102), Expect = 1e-04
Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 37/233 (15%)
Query: 51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 110
L Y R + V N V + + + +D + +G V R
Sbjct: 427 TLRYYRRMIEVTGVTLK--LNHTV----TADQL----------QAFDETILASGI--VPR 468
Query: 111 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
P G ++L +D +V ++G G G D A+ S E +
Sbjct: 469 TPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI---- 524
Query: 171 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH 230
F + + Q G + +Q+ L KP L
Sbjct: 525 ---AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS------KPGQGLGKTT 575
Query: 231 PIMNSQILYHIGHG-DILPKDDIKNLNGNIVHFVDDTH---IEVDTIIYATGY 279
++ L G ++P + ++ + +H V + + VD ++ G
Sbjct: 576 GWIHRTTLLS--RGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 626
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 42.3 bits (100), Expect = 2e-04
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 32 QVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVEL 88
QV D +NY P + L+++ +DV S ++++ + ++E
Sbjct: 248 QVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIET 307
Query: 89 SNGKKKKYDFIAVCNGAQRVARYPN------YSGY------------FSGEILHSMDYKS 130
++G K I + GA+ R N Y F
Sbjct: 308 ASGAVLKARSIIIATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF------------ 353
Query: 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
+ KRV V+G GNSG + A+D + E V
Sbjct: 354 ----KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 387
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 40.2 bits (95), Expect = 7e-04
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
+N+P +P + + D R +++F T + E + +V+ S+
Sbjct: 58 ENFPGFPEGILGVELTDKFRKQSERF--------GTTIF----TETVTKVDFSSKPFKLF 105
Query: 91 GKKKKY--DFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS------------PDQIRN 136
K D + + GA A+ + F G + + RN
Sbjct: 106 TDSKAILADAVILAIGAV--AKRLS----FVGSGEVLGGFWNRGISACAVCDGAAPIFRN 159
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
K + V+G G+S + A + + KVY RR
Sbjct: 160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 191
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 39.4 bits (93), Expect = 0.001
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 61/159 (38%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
+N+P PN +++ + +A KF TE+I ++ I +V+L N
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEHATKF--------ETEII----FDHINKVDLQNRPFRLN 97
Query: 91 GKKKKY--DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYKSP 131
G +Y D + + GA ARY P+ + G F Y
Sbjct: 98 GDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATSDGFF---------Y--- 143
Query: 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
RN++V V+G GN+ + A+ S+ + +V+ H RR
Sbjct: 144 ---RNQKVAVIGGGNTAVEEALYLSNIASEVHLIH--RR 177
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 39.1 bits (92), Expect = 0.002
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 58/158 (36%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
+NYP + N ++D +R A +F ++ ED+ V L
Sbjct: 59 ENYPGFRNGITGPELMDEMREQALRF--------GADLR----MEDVESVSLHGPLKSVV 106
Query: 91 -GKKKKY--DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYKS 130
+ + + + GA ARY P G F +
Sbjct: 107 TADGQTHRARAVILAMGAA--ARYLQVPGEQELLGRGVSSCATCDGFF---------F-- 153
Query: 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
R++ + V+G G+S + A + + V RR
Sbjct: 154 ----RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRR 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 40/251 (15%), Positives = 70/251 (27%), Gaps = 51/251 (20%)
Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197
R L + G+ + V + + +++ +F P P ++ ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASF----FIASQL----QEQFNKILPEPTEGFAADDEPTTPA 58
Query: 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG 257
E + K G+ V + ++N L L +DI L
Sbjct: 59 ELVG------KFLGY--VSS--LVEPSKVGQFDQVLNL-CLTEF-ENCYLEGNDIHALAA 106
Query: 258 NIVHFVDDTHIEVDTII--YATGY---NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNI 312
++ D T ++ +I Y T R F K LF +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFD---------KKSNSALFRA-VGEGNAQL 156
Query: 313 F-FFGFVNAAAGLG------DGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQ 365
FG G G + LR Q + I+ S L L D +
Sbjct: 157 VAIFG------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 366 DYFIDSHRHLW 376
+ W
Sbjct: 211 QGL-NILE--W 218
Score = 37.3 bits (86), Expect = 0.008
Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 51/154 (33%)
Query: 226 LDAAHPIMNSQILYHIG--------HGDILP---KDDIKNLNGN---IVHFVDDTHIEVD 271
+ + +L+ IG + + P +D ++N G ++ + T +V
Sbjct: 293 FVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 272 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA----PRNLDNIFFF---GFVNAAAGL 324
+ T N H P + I+ +N G + GL
Sbjct: 351 DYVNKT--NSHLP-------------AGKQVEISLVNGAKN------LVVSGPPQSLYGL 389
Query: 325 GDGLRLQGQFIRSYI-QAFI----RKSKGYLKFL 353
L L+ S + Q+ I RK K +FL
Sbjct: 390 N--LTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 37.5 bits (88), Expect = 0.005
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 67/164 (40%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 96
+N+P +P + + A+KF +V +++ V+ Y
Sbjct: 53 ENFPGFPEPIAGMELAQRMHQQAEKF--------GAKVE----MDEVQGVQHD-ATSHPY 99
Query: 97 DFIAVCN-------------GAQRVARY---PN---YSGY-----------FSGEILHSM 126
F GA R P + G F
Sbjct: 100 PFTVRGYNGEYRAKAVILATGAD--PRKLGIPGEDNFWGKGVSTCATCDGFF-------- 149
Query: 127 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
Y + K+V+V+G G++ + + + +++V H RR
Sbjct: 150 -Y------KGKKVVVIGGGDAAVEEGMFLTKFADEVTVIH--RR 184
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 37.1 bits (87), Expect = 0.007
Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 57/160 (35%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
+N+P +P+ ++D +R + KF TE+I E + +V+LS+
Sbjct: 72 ENFPGFPDGLTGSELMDRMREQSTKF--------GTEII----TETVSKVDLSSKPFKLW 119
Query: 91 ----GKKKKY--DFIAVCNGAQRVARY---PN---YSGY----------FSGEILHSMDY 128
+ D I + GA A+ P Y
Sbjct: 120 TEFNEDAEPVTTDAIILATGAS--AKRMHLPGEETYWQKGISACAVCDGAV--------- 168
Query: 129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
RNK + V+G G+S C+ A + + KV+ R+
Sbjct: 169 ---PIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRK 205
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 36.7 bits (86), Expect = 0.011
Identities = 23/160 (14%), Positives = 43/160 (26%), Gaps = 62/160 (38%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK-- 94
+NYP + + +F + + V +
Sbjct: 47 ENYPGVKEVVSGLDFMQPWQEQCFRF--------GLKHE----MTAVQRVSKKDSHFVIL 94
Query: 95 -----KY--DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYKS 130
+ + + G + Y G F Y
Sbjct: 95 AEDGKTFEAKSVIIATGGS--PKRTGIKGESEYWGKGVSTCATCDGFF---------Y-- 141
Query: 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
+NK V V+G G++ + A+ ++ +KVY H RR
Sbjct: 142 ----KNKEVAVLGGGDTAVEEAIYLANICKKVYLIH--RR 175
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 35.6 bits (83), Expect = 0.021
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 44/145 (30%)
Query: 40 DNYPVYPNHS---MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 96
+NY + + + +A + EV ++++ + +++E ++
Sbjct: 61 ENYLGFKSIVGSELA-KLFADHAANYAK---IREGVEVRSIKKTQGGFDIETNDDTYHAK 116
Query: 97 DFIAVCNGAQRVARYPN------YSG------------YFSGEILHSMDYKSPDQIRNKR 138
I + G ++ Y G F + KR
Sbjct: 117 YVI-ITTGTT--HKHLGVKGESEYFGKGTSYCSTCDGYLF----------------KGKR 157
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVY 163
V+ +G GNSG A+ S + + V
Sbjct: 158 VVTIGGGNSGAIAAISMSEYVKNVT 182
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 35.6 bits (83), Expect = 0.021
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 47/152 (30%)
Query: 40 DNYPVYPNHS---MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 96
D+Y M+ + +K++V + V +E D + V+ + K
Sbjct: 59 DDYLGLIEIQASDMI-KVFNKHIEKYEV---PVLLDIVEKIENRGDEFVVKTKRKGEFKA 114
Query: 97 DFIAVCNGAQRVARYPN------YSGY------------FSGEILHSMDYKSPDQIRNKR 138
D + + G + R ++G F +N+
Sbjct: 115 DSVILGIGVK--RRKLGVPGEQEFAGRGISYCSVADAPLF----------------KNRV 156
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
V V+G G+S + A S +S KVY H RR
Sbjct: 157 VAVIGGGDSALEGAEILSSYSTKVYLIH--RR 186
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 34.8 bits (81), Expect = 0.022
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 21/137 (15%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 96
NYP + +L L ++A+++ + V + ++EVE G
Sbjct: 44 PNYPGLLDEPSGEELLRRLEAHARRYGA---EVRPGVVKGVRDMGGVFEVETEEGV---E 97
Query: 97 DFIAV--CNGAQRVARYPNYSGYFSGEILHSMDYKSPDQ---IRNKRVLVVGAGNSGCDI 151
+ C P+ G + Y D+ RV G
Sbjct: 98 KAERLLLCTHKD--PTLPSLLG-LTRR----GAYIDTDEGGRTSYPRVYAAGVARGKVPG 150
Query: 152 AVDASHHSEKVYHSTRR 168
S
Sbjct: 151 HAIISAGDGAYVAVHLV 167
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB:
3k20_A
Length = 191
Score = 33.8 bits (77), Expect = 0.053
Identities = 9/105 (8%), Positives = 24/105 (22%), Gaps = 11/105 (10%)
Query: 50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
+ D + + I L + +L + + ++
Sbjct: 29 QIADSISEAVTAAVSARGEALSVSTIELSELI----PDLMTAMTTRVHTTKLEEITSALS 84
Query: 110 R-------YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNS 147
P + ++G D D + ++ S
Sbjct: 85 ASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATAGS 129
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 34.5 bits (80), Expect = 0.053
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 253 KNLNGNI-VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
N +G+ V F ++VD ++ A G R P + +L +G+
Sbjct: 263 LNTDGSKHVTFESGKTLDVDVVMMAIG--RI-PRTNDLQLG-NVGV 304
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 34.4 bits (80), Expect = 0.057
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 253 KNLNGNI-VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
KN +G++ + D VD +I+A G R P D LE G+
Sbjct: 236 KNTDGSLTLELEDGRSETVDCLIWAIG--RE-PANDNINLE-AAGV 277
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 34.4 bits (80), Expect = 0.068
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 253 KNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
N V + I D ++ ATG R P LE + G+
Sbjct: 260 STENCYNVVLTNGQTICADRVMLATG--RV-PNTTGLGLE-RAGV 300
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 34.1 bits (79), Expect = 0.082
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 253 KNLNGNI-VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
KN +G V F + D ++ A G R P +LE K G+
Sbjct: 259 KNADGTRHVVFESGAEADYDVVMLAIG--RV-PRSQTLQLE-KAGV 300
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 33.6 bits (78), Expect = 0.089
Identities = 22/161 (13%), Positives = 44/161 (27%), Gaps = 63/161 (39%)
Query: 40 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 96
+NYP + +F + + ++ ++
Sbjct: 50 ENYPGVAQVMDGISFMAPWSEQCMRF--------GLKHE----MVGVEQILKNSDGSFTI 97
Query: 97 ----------DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYK 129
+ VC G+ + + G F Y
Sbjct: 98 KLEGGKTELAKAVIVCTGSA--PKKAGFKGEDEFFGKGVSTCATCDGFF---------Y- 145
Query: 130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
+NK V V+G G++ + A+ ++ K+Y H RR
Sbjct: 146 -----KNKEVAVLGGGDTALEEALYLANICSKIYLIH--RR 179
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 32.6 bits (74), Expect = 0.19
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 88 LSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNS 147
+ + + + A + G I+ ++ + I V V+G G
Sbjct: 113 MKKTNRTLVKLMERDDIAIYNSIPT-----AEGTIMMAIQ-HTDFTIHGANVAVLGLGRV 166
Query: 148 GCDIAVDASHHSEKVYHSTRRGYH 171
G +A + KV R
Sbjct: 167 GMSVARKFAALGAKVKVGARESDL 190
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 32.2 bits (74), Expect = 0.27
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 129 KSPDQIRNKRVLVVGAGNSG 148
K+ NK+VLV+G SG
Sbjct: 2 KTITTFENKKVLVLGLARSG 21
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 32.2 bits (74), Expect = 0.29
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 19/84 (22%)
Query: 117 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH--------STRR 168
Y+ ++ + D + K V + G GN V A ++K+ S
Sbjct: 215 YYVEAVMKHEN----DTLVGKTVALAGFGN------V-AWGAAKKLAELGAKAVTLSGPD 263
Query: 169 GYHYYPKFIDGKPTPQWMLQLGNK 192
GY Y P+ I + +ML++
Sbjct: 264 GYIYDPEGITTEEKINYMLEMRAS 287
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 32.1 bits (74), Expect = 0.33
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 253 KNLNGN-IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
+ +G + + I D ++ A G R P + LE G+
Sbjct: 239 ADADGRRVATTMKHGEIVADQVMLALG--RM-PNTNGLGLE-AAGV 280
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 32.0 bits (73), Expect = 0.36
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 48 HSMMLDYLRSYAKKFDVYNHSI-FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106
+++L+ L N ++ ++ +++ LE + W + N + D + + NG
Sbjct: 131 RAILLNSLE---------NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGM 181
Query: 107 -RVARY-----PNYSGY 117
+V ++ +G
Sbjct: 182 SKVRKFVTDTEVEETGT 198
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 31.0 bits (71), Expect = 0.54
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
++ V+ A A+ E + +
Sbjct: 140 DQGKIGVIAASPMAIHHALMLPDWGETTFFTNGI 173
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 30.8 bits (69), Expect = 0.67
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 133 QIRNKRVLVVGAGN-----------SGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 181
Q+++KR+L++G G +GC + + + + + + + +
Sbjct: 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYRED 69
Query: 182 TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD 216
+++ + +K E YI+ FK D +
Sbjct: 70 AKRFINPNWDP--TKNEIYEYIRSDFKDEYLDLEN 102
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 30.9 bits (69), Expect = 0.75
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 132 DQIRNKRVLVVGAGNSGCDIA 152
+ + RVLVVGAG GC++
Sbjct: 13 EAVAGGRVLVVGAGGIGCELL 33
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 30.8 bits (70), Expect = 0.85
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 132 DQIRNKRVLVVGAGNSGCDIA 152
D I+N +VL++GAG GC ++
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVS 50
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 30.6 bits (70), Expect = 0.96
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPD--QIR----- 135
++ L++G +Y + + GA+ R + ++ L ++D + +R
Sbjct: 88 KLLLASGTAIEYGHLVLATGAR--NRMLDVPNASLPDVLYLRTLD----ESEVLRQRMPD 141
Query: 136 NKRVLVVGAGNSGCDIA 152
K V+V+GAG G + A
Sbjct: 142 KKHVVVIGAGFIGLEFA 158
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 30.5 bits (69), Expect = 0.98
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHST---RRGYHYYPKFIDGKPTPQWMLQLGNK 192
+ V+++GAG G A + + T Y + P +G
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF--------VPSN-PWVGVG 54
Query: 193 FSSKEETMAYIKQVFKLAGFD 213
+ +++ I+ + G
Sbjct: 55 WKERDDIAFPIRHYVERKGIH 75
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading
bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Length = 197
Score = 29.9 bits (67), Expect = 1.0
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 112 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAG 145
P Y ++G + +D + K L + G
Sbjct: 78 PIYKASYTGLLKAFLDILPQFALAGKAALPLATG 111
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHST---RRGYHYYPKFIDGKPTPQWMLQLGNKF 193
K V+V+G G G A + + + T R Y + TP +
Sbjct: 3 KHVVVIGGGVGGIATAYNLRNLMPDL-KITLISDRPYFGF--------TPAFPHLAMGWR 53
Query: 194 SSKEETMAYIKQVFKLAGFD 213
E+ + + +
Sbjct: 54 -KFEDISVPLAPLLPKFNIE 72
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 30.2 bits (69), Expect = 1.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 253 KNLNGNIVHFVDD-THIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
++ G + D D++I+A G R P LE GI
Sbjct: 235 RDAQGTTLVAQDGTRLEGFDSVIWAVG--RA-PNTRDLGLE-AAGI 276
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 30.1 bits (68), Expect = 1.2
Identities = 9/80 (11%), Positives = 17/80 (21%), Gaps = 12/80 (15%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHST---RRGYHYYPKFIDGKPTPQWMLQLGNKF 193
+VLV+G A + + Y+ P
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF--------RPALPHVAIGVR 53
Query: 194 SSKEETMAYIKQVFKLAGFD 213
+E + + G
Sbjct: 54 -DVDELKVDLSEALPEKGIQ 72
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 30.2 bits (69), Expect = 1.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 139 VLVVGAGNSGCDIAVDAS 156
++V+G G +G IA DA+
Sbjct: 6 LIVIGGGINGAGIAADAA 23
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 29.8 bits (68), Expect = 1.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPD--QIRN---- 136
+ L +G D I + G++ AR G + L + D +R+
Sbjct: 89 TISLDDGTTLSADAIVIATGSR--ARTMALPGSQLPGVVTLRTYG----DVQVLRDSWTS 142
Query: 137 -KRVLVVGAGNSGCDIA 152
R+L+VG G GC++A
Sbjct: 143 ATRLLIVGGGLIGCEVA 159
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 29.9 bits (67), Expect = 1.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152
SG F+ + +VLV+GAG GC++
Sbjct: 19 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELL 56
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 28.6 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 12/43 (27%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK-FID 178
K+VL+ GAG++G ++ + R+G ++P FID
Sbjct: 5 KKVLIYGAGSAG-----------LQLANMLRQGKEFHPIAFID 36
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 139 VLVVGAGNSGCDIAVDAS 156
+LV+G G +G IA+DA
Sbjct: 21 LLVIGGGITGAGIALDAQ 38
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 29.6 bits (66), Expect = 1.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKV 162
I +K V+G GN G A + + V
Sbjct: 2 IESKTYAVLGLGNGGHAFAAYLALKGQSV 30
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 29.6 bits (67), Expect = 1.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 139 VLVVGAGNSGCDIAVDAS 156
+L++G G +G +AV A+
Sbjct: 35 LLIIGGGITGAGVAVQAA 52
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.4 bits (66), Expect = 1.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
++ +L+VGAG G A H RRGY
Sbjct: 5 KSSSLLIVGAGTWGTSTA----------LHLARRGY 30
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 29.8 bits (67), Expect = 1.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 132 DQIRNKRVLVVGAGNSGCDIA 152
D I+N +VL++GAG GC ++
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVS 343
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.5 bits (67), Expect = 2.0
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPD--QIR----- 135
V LS+G+ Y + + GA R + + L +++ D +I+
Sbjct: 91 TVALSDGRTLPYGTLVLATGAA--PRALPTLQGATMPVHTLRTLE----DARRIQAGLRP 144
Query: 136 NKRVLVVGAGNSGCDIA 152
R+L+VG G G ++A
Sbjct: 145 QSRLLIVGGGVIGLELA 161
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 29.4 bits (67), Expect = 2.1
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 135 RNKRVLVVGAGNSG 148
+ K V+++G G +G
Sbjct: 4 QGKNVVIIGLGLTG 17
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 29.2 bits (66), Expect = 2.2
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 134 IRNKRVLVVGAGNSGC 149
IR V +VG G G
Sbjct: 34 IRTFAVAIVGVGGVGS 49
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; rossmann fold, oxidase, methyl
transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli}
PDB: 3awi_A*
Length = 676
Score = 29.5 bits (65), Expect = 2.2
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 69 IFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 106
+ ++ N + +D W + + ++ + + + NG Q
Sbjct: 435 YYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.5 bits (67), Expect = 2.3
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI-----LHSMDYKSPD--QIRN- 136
+V LS+G+ YD + + G + R + G+ L +++ D IR
Sbjct: 92 QVILSDGRALDYDRLVLATGGR--PRPLPVASGAVGKANNFRYLRTLE----DAECIRRQ 145
Query: 137 ----KRVLVVGAGNSGCDIA 152
R++V+G G G ++A
Sbjct: 146 LIADNRLVVIGGGYIGLEVA 165
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.4 bits (66), Expect = 2.5
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 26/83 (31%)
Query: 92 KKKKYD--FIAVCNGAQRVARYPNYSGYFSGE--ILHSMDY---------------KSPD 132
K++ Y FI + G + + + + S D+ SP
Sbjct: 272 KEEGYKAAFIGI--GLPE-PKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPL 328
Query: 133 QIRNKRVLVVGAGNSGCDIAVDA 155
V+V+GAG+ A D
Sbjct: 329 PSIRGAVIVLGAGD----TAFDC 347
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 28.4 bits (64), Expect = 3.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 133 QIRNKRVLVVGAGN 146
++ + VLVVG G
Sbjct: 28 DLKGRSVLVVGGGT 41
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 85 EVELSNGKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSM----DYKSPDQIR---- 135
V+L++G + Y+ + G R + +G D+ +
Sbjct: 122 MVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDF---RSLEKISR 178
Query: 136 -NKRVLVVGAGNSGCDIA 152
K + ++G G G ++A
Sbjct: 179 EVKSITIIGGGFLGSELA 196
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 28.7 bits (65), Expect = 3.8
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 117 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH--------STRR 168
YF+ +L ++ D + NK+ LV G+GN V A + EK+ S
Sbjct: 224 YFAENVLKDLN----DNLENKKCLVSGSGN------V-AQYLVEKLIEKGAIVLTMSDSN 272
Query: 169 GYHYYPKFID 178
GY P
Sbjct: 273 GYILEPNGFT 282
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 28.3 bits (62), Expect = 4.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
V+V+G G + C ++ S +KV H ++ +
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH 45
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 28.4 bits (63), Expect = 4.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
+L+VG G C A +A ++K +
Sbjct: 25 LLMVGGGMGNCGAAFEAVRWADKYAPEAK 53
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 28.3 bits (62), Expect = 4.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
V+V+G G + C ++ S + +KV H R Y
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPY 40
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.5 bits (64), Expect = 5.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169
R++++GAG G ++A RG
Sbjct: 6 RIVIIGAGIVGTNLA----------DELVTRG 27
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 28.3 bits (62), Expect = 5.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 132 DQIRNKRVLVVGAGNSGCDIA 152
+++ VL++G G +IA
Sbjct: 23 LKMQTSNVLILGLKGLGVEIA 43
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 28.0 bits (63), Expect = 5.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 127 DYKSPDQIRNKRVLVVGAGNSGCDIA 152
++ + +L++G G+ G IA
Sbjct: 131 QSHPYQGLKGRTLLILGTGSIGQHIA 156
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.0 bits (63), Expect = 5.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 127 DYKSPDQIRNKRVLVVGAGNSGCDIA 152
V ++GAG G +A
Sbjct: 130 KPLPEYTREEFSVGIMGAGVLGAKVA 155
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR;
2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 27.6 bits (62), Expect = 5.5
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 69 IFNTEVINLEQYEDIWEVELSNGKKKKYDFI 99
+ + + +E + +E SNG ++ Y+ +
Sbjct: 18 VARSRLFTVESVD----LEFSNGVRRVYERM 44
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 28.1 bits (63), Expect = 5.6
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152
+ + D+++N +V+++G G G ++
Sbjct: 103 QSYGANPVLVQDKLKNAKVVILGCGGIGNHVS 134
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 28.2 bits (62), Expect = 5.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 127 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
Y+ N + LVVGAG G AV+ + +V +R
Sbjct: 83 VYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKR 124
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid
biosynthesis, cholesterol biosynthesis, mitochondrion,
phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB:
2wya_A*
Length = 460
Score = 28.3 bits (62), Expect = 5.7
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 36 YPMPDNYPVYPNHSMML--DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK 93
+ P V + + ++ D+L + + + + LE +++ + K
Sbjct: 252 FHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKA 311
Query: 94 KKYDFIA-VCNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGC 149
+ F N Y+ G + + + S ++ R+ G SG
Sbjct: 312 SQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYG-SGL 368
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 28.0 bits (62), Expect = 6.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 123 LHSMDYKSPDQIRNKRVLVVGAGNSG 148
H + + V VVG G SG
Sbjct: 3 HHHHHHHHMPRTTGMNVAVVGGGISG 28
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 27.7 bits (61), Expect = 6.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKV 162
KRV+V+G+G G A+ + V
Sbjct: 7 KRVVVLGSGVIGLSSALILARKGYSV 32
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 27.9 bits (62), Expect = 6.9
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 121 EILHSMDYKSPDQIRNKRVLVVGAGNSG 148
E L K V++VGAG +G
Sbjct: 18 EFLEIARNGLKATSNPKHVVIVGAGMAG 45
>3h43_A Proteasome-activating nucleotidase; regulatory particle,
nucleosidase, ATP-binding, cytoplasm,
nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus
jannaschii}
Length = 85
Score = 25.9 bits (57), Expect = 7.1
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 249 KDDIKNLN------GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLE 292
+ ++ + G +V V + + V + + F++ + L
Sbjct: 8 RRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLA 57
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 27.8 bits (62), Expect = 7.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 137 KRVLVVGAGNSGCDIA 152
++V+VVG G G A
Sbjct: 3 RKVVVVGGGTGGATAA 18
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 27.7 bits (62), Expect = 7.3
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 132 DQIRNKRVLVVGAGNS 147
+ R LV+G S
Sbjct: 31 SVVSQSRFLVLGGAGS 46
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 27.9 bits (62), Expect = 7.5
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 93 KKKYDFIAVCNGAQRVARYPNYSG------YFSGEIL------HSMDYKSPDQIRNKRVL 140
++YD + GAQ R N G + + + + SPD + R +
Sbjct: 94 SERYDAVIYAVGAQS-DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPD-LSGARAV 151
Query: 141 VVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 200
V+G GN D+A + + T H ++ +
Sbjct: 152 VIGNGNVALDVARILLTDPDVLAR-TDIADHALESLRPRGIQEVVIV----GRRGPLQAA 206
Query: 201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAA 229
++ +LA DGVD + +
Sbjct: 207 FTTLELRELADLDGVDVVIDPAELDGITD 235
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 27.6 bits (60), Expect = 7.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKV 162
K VL++G+G + KV
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKV 29
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 27.5 bits (62), Expect = 7.7
Identities = 2/35 (5%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 135 RNKRVLVVGAGNSGC-DIAVDASHHSEKVYHSTRR 168
+++ ++++ + + S + +T
Sbjct: 145 KDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNG 179
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 27.1 bits (61), Expect = 8.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152
+L + ++ + +VL++G G G A
Sbjct: 14 LLDDIALDGQQKLLDSQVLIIGLGGLGTPAA 44
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 27.6 bits (62), Expect = 8.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 253 KNLNGNI-VHFVD-DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
K + N+ +H D + D +IY G R P + KLE KL +
Sbjct: 245 KVSDKNLSIHLSDGRIYEHFDHVIYCVG--RS-PDTENLKLE-KLNV 287
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 27.6 bits (62), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Query: 133 QIRNKRVLVVGAGNSGCDIA 152
Q+R++ L+VG G D+A
Sbjct: 9 QLRDRDCLIVGGG----DVA 24
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2;
1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A*
2hj9_A*
Length = 342
Score = 27.5 bits (61), Expect = 8.9
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 270 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDN---IFFFGFVNAAAGLGD 326
D +I+ RH F++ + I R D + GF +A
Sbjct: 105 SDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGS--- 161
Query: 327 GLRLQGQFI 335
R
Sbjct: 162 --RELATEF 168
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 27.5 bits (62), Expect = 9.1
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 253 KNLNGNI-VHFVD-----DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
K +G + V + + ++ DT+++A G R +D L G+
Sbjct: 255 KQDDGKLLVKYKNVETGEESEDVYDTVLWAIG--RK-GLVDDLNLP-NAGV 301
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 27.1 bits (61), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGC 149
IL D+ + +++ RVL+VG G GC
Sbjct: 17 ILRGFDFDGQEALKDSRVLIVGLGGLGC 44
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 26.7 bits (60), Expect = 9.2
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 11/32 (34%)
Query: 133 QIRNKRVLVVGAG-----------NSGCDIAV 153
+ ++L+VG G + V
Sbjct: 18 KNGGNKILLVGNGMLASEIAPYFSYPQYKVTV 49
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 27.6 bits (62), Expect = 9.3
Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 31/132 (23%)
Query: 51 MLDYLRSYAKKF---DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 107
+ +Y + + ++Y + + +DI + ++ + GA
Sbjct: 445 VKEYREAVLAELPNVEIY----RESPM----TGDDI--------VEFGFEHVITATGA-- 486
Query: 108 VARYPNYSGYFSGEI--------LHSMDYKSPDQIRNKRVLVVGAGNS--GCDIAVDASH 157
R + + + + L D + K+V+V + G +A +
Sbjct: 487 TWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQ 546
Query: 158 HSEKVYHSTRRG 169
+V T
Sbjct: 547 KGYEVSIVTPGA 558
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 27.2 bits (61), Expect = 9.6
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 69 IFNTEVINLEQYEDIWEVELSNG 91
+ N E + + + + WEV G
Sbjct: 172 LCNHEALEIRRVDGAWEVRCDAG 194
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 27.5 bits (62), Expect = 9.9
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 253 KNLNGNI-VHFVDDT-----HIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 297
K + V + D DT+++A G R P LE K GI
Sbjct: 253 KLPTNQLQVTWEDHASGKEDTGTFDTVLWAIG--RV-PETRTLNLE-KAGI 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,709,754
Number of extensions: 426338
Number of successful extensions: 1612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 134
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)